Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1242560 | XP_013445290.2 | 84.293 | 382 | 43 | 3 | 1 | 366 | 60 | 440 | 0.0 | 655 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1242560 | sp|Q94JM3|ARFB_ARATH | 42.740 | 365 | 167 | 9 | 1 | 334 | 101 | 454 | 1.53e-88 | 287 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa1242560 | TF | B3-ARF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1242560 | MtrunA17_Chr8g0356211 | 83.121 | 314 | 36 | 3 | 69 | 366 | 1 | 313 | 0.0 | 530 |
| Msa1242560 | MtrunA17_Chr8g0385791 | 43.207 | 368 | 175 | 9 | 3 | 342 | 101 | 462 | 2.35e-86 | 278 |
| Msa1242560 | MtrunA17_Chr2g0276781 | 44.966 | 298 | 147 | 5 | 2 | 285 | 64 | 358 | 2.45e-79 | 256 |
| Msa1242560 | MtrunA17_Chr8g0346711 | 44.186 | 301 | 150 | 8 | 2 | 288 | 70 | 366 | 2.41e-74 | 243 |
| Msa1242560 | MtrunA17_Chr4g0009751 | 43.098 | 297 | 151 | 6 | 3 | 285 | 61 | 353 | 2.97e-71 | 233 |
| Msa1242560 | MtrunA17_Chr4g0029671 | 39.755 | 327 | 165 | 8 | 1 | 299 | 93 | 415 | 8.16e-71 | 236 |
| Msa1242560 | MtrunA17_Chr7g0239061 | 39.275 | 331 | 180 | 8 | 3 | 316 | 56 | 382 | 2.35e-70 | 232 |
| Msa1242560 | MtrunA17_Chr4g0046371 | 37.535 | 357 | 189 | 8 | 7 | 332 | 78 | 431 | 3.73e-69 | 229 |
| Msa1242560 | MtrunA17_Chr2g0282961 | 40.924 | 303 | 152 | 6 | 7 | 285 | 92 | 391 | 8.55e-66 | 219 |
| Msa1242560 | MtrunA17_Chr2g0326281 | 38.154 | 325 | 157 | 8 | 1 | 285 | 95 | 415 | 3.48e-64 | 218 |
| Msa1242560 | MtrunA17_Chr1g0156321 | 42.809 | 299 | 146 | 10 | 2 | 281 | 84 | 376 | 6.21e-60 | 207 |
| Msa1242560 | MtrunA17_Chr8g0376771 | 39.319 | 323 | 174 | 9 | 3 | 307 | 65 | 383 | 2.68e-59 | 206 |
| Msa1242560 | MtrunA17_Chr2g0285461 | 39.881 | 336 | 177 | 11 | 3 | 317 | 65 | 396 | 2.97e-59 | 206 |
| Msa1242560 | MtrunA17_Chr5g0433301 | 41.000 | 300 | 155 | 9 | 2 | 283 | 65 | 360 | 4.01e-59 | 204 |
| Msa1242560 | MtrunA17_Chr2g0301251 | 40.066 | 302 | 158 | 8 | 3 | 286 | 64 | 360 | 1.91e-57 | 201 |
| Msa1242560 | MtrunA17_Chr3g0109391 | 39.799 | 299 | 160 | 8 | 2 | 283 | 67 | 362 | 7.24e-57 | 198 |
| Msa1242560 | MtrunA17_Chr4g0070181 | 38.689 | 305 | 158 | 8 | 3 | 286 | 64 | 360 | 1.42e-56 | 199 |
| Msa1242560 | MtrunA17_Chr8g0389081 | 38.487 | 304 | 157 | 9 | 1 | 282 | 72 | 367 | 5.35e-54 | 191 |
| Msa1242560 | MtrunA17_Chr2g0326761 | 31.768 | 362 | 179 | 8 | 5 | 305 | 50 | 404 | 5.55e-50 | 178 |
| Msa1242560 | MtrunA17_Chr4g0028971 | 32.303 | 356 | 173 | 7 | 12 | 299 | 56 | 411 | 3.19e-49 | 176 |
| Msa1242560 | MtrunA17_Chr1g0181211 | 30.541 | 370 | 187 | 10 | 8 | 307 | 69 | 438 | 7.05e-46 | 166 |
| Msa1242560 | MtrunA17_Chr1g0199681 | 32.615 | 325 | 166 | 7 | 8 | 281 | 135 | 457 | 7.46e-45 | 164 |
| Msa1242560 | MtrunA17_Chr7g0264171 | 30.790 | 367 | 181 | 14 | 8 | 305 | 73 | 435 | 6.75e-42 | 154 |
| Msa1242560 | MtrunA17_Chr7g0264161 | 30.576 | 278 | 162 | 7 | 8 | 264 | 34 | 301 | 4.36e-37 | 135 |
| Msa1242560 | MtrunA17_Chr5g0417281 | 29.603 | 277 | 183 | 5 | 12 | 281 | 60 | 331 | 2.90e-36 | 138 |
| Msa1242560 | MtrunA17_Chr3g0115271 | 29.674 | 337 | 177 | 11 | 12 | 299 | 66 | 391 | 9.91e-33 | 129 |
| Msa1242560 | MtrunA17_Chr5g0424931 | 26.582 | 316 | 195 | 5 | 14 | 299 | 70 | 378 | 7.15e-32 | 125 |
| Msa1242560 | MtrunA17_Chr1g0178011 | 27.692 | 325 | 213 | 9 | 1 | 311 | 51 | 367 | 1.01e-29 | 119 |
| Msa1242560 | MtrunA17_Chr2g0289221 | 28.405 | 257 | 171 | 7 | 14 | 264 | 72 | 321 | 9.09e-27 | 109 |
| Msa1242560 | MtrunA17_Chr5g0436761 | 27.046 | 281 | 189 | 6 | 12 | 281 | 61 | 336 | 1.43e-26 | 110 |
| Msa1242560 | MtrunA17_Chr5g0417211 | 26.923 | 260 | 179 | 4 | 12 | 265 | 61 | 315 | 3.76e-24 | 102 |
| Msa1242560 | MtrunA17_Chr2g0277461 | 28.374 | 289 | 170 | 8 | 13 | 281 | 65 | 336 | 1.60e-23 | 101 |
| Msa1242560 | MtrunA17_Chr5g0425661 | 29.730 | 148 | 100 | 1 | 9 | 152 | 80 | 227 | 2.38e-19 | 86.3 |
| Msa1242560 | MtrunA17_Chr5g0424741 | 23.620 | 326 | 193 | 14 | 9 | 286 | 58 | 375 | 3.52e-17 | 82.8 |
| Msa1242560 | MtrunA17_Chr5g0424801 | 25.166 | 302 | 177 | 13 | 10 | 284 | 59 | 338 | 4.84e-17 | 81.6 |
| Msa1242560 | MtrunA17_Chr2g0277531 | 25.455 | 275 | 154 | 9 | 13 | 264 | 72 | 318 | 7.88e-16 | 77.4 |
| Msa1242560 | MtrunA17_Chr5g0425261 | 24.671 | 304 | 180 | 13 | 10 | 286 | 59 | 340 | 3.44e-15 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1242560 | AT5G62000.2 | 42.740 | 365 | 167 | 9 | 1 | 334 | 101 | 454 | 1.55e-89 | 287 |
| Msa1242560 | AT5G62000.5 | 42.740 | 365 | 167 | 9 | 1 | 334 | 101 | 454 | 1.55e-89 | 287 |
| Msa1242560 | AT5G62000.3 | 42.740 | 365 | 167 | 9 | 1 | 334 | 101 | 454 | 1.55e-89 | 287 |
| Msa1242560 | AT5G62000.1 | 42.740 | 365 | 167 | 9 | 1 | 334 | 101 | 454 | 1.55e-89 | 287 |
| Msa1242560 | AT5G62000.4 | 42.740 | 365 | 167 | 9 | 1 | 334 | 101 | 454 | 2.38e-89 | 286 |
| Msa1242560 | AT3G61830.2 | 43.390 | 295 | 149 | 7 | 2 | 283 | 16 | 305 | 3.00e-75 | 243 |
| Msa1242560 | AT3G61830.1 | 43.390 | 295 | 149 | 7 | 2 | 283 | 67 | 356 | 1.18e-74 | 242 |
| Msa1242560 | AT1G59750.4 | 41.946 | 298 | 154 | 6 | 1 | 283 | 62 | 355 | 1.29e-74 | 244 |
| Msa1242560 | AT1G59750.1 | 41.946 | 298 | 154 | 6 | 1 | 283 | 62 | 355 | 1.30e-74 | 244 |
| Msa1242560 | AT1G59750.3 | 41.946 | 298 | 154 | 6 | 1 | 283 | 62 | 355 | 1.30e-74 | 244 |
| Msa1242560 | AT1G59750.2 | 41.946 | 298 | 154 | 6 | 1 | 283 | 62 | 355 | 1.69e-74 | 243 |
| Msa1242560 | AT2G46530.1 | 42.034 | 295 | 155 | 6 | 2 | 284 | 63 | 353 | 6.44e-73 | 238 |
| Msa1242560 | AT2G46530.3 | 42.034 | 295 | 155 | 6 | 2 | 284 | 84 | 374 | 9.74e-73 | 238 |
| Msa1242560 | AT4G23980.2 | 42.517 | 294 | 150 | 8 | 4 | 283 | 56 | 344 | 7.30e-70 | 231 |
| Msa1242560 | AT4G23980.1 | 42.517 | 294 | 150 | 8 | 4 | 283 | 56 | 344 | 8.51e-70 | 230 |
| Msa1242560 | AT5G60450.2 | 39.692 | 325 | 166 | 8 | 1 | 299 | 80 | 400 | 8.56e-68 | 228 |
| Msa1242560 | AT5G60450.1 | 39.692 | 325 | 166 | 8 | 1 | 299 | 104 | 424 | 1.35e-67 | 227 |
| Msa1242560 | AT2G33860.1 | 37.829 | 304 | 162 | 5 | 6 | 285 | 92 | 392 | 2.97e-64 | 215 |
| Msa1242560 | AT2G46530.2 | 43.038 | 237 | 120 | 5 | 59 | 284 | 34 | 266 | 2.76e-61 | 205 |
| Msa1242560 | AT1G19220.1 | 41.391 | 302 | 154 | 9 | 3 | 286 | 64 | 360 | 1.45e-60 | 211 |
| Msa1242560 | AT1G19850.2 | 41.667 | 300 | 149 | 11 | 2 | 281 | 84 | 377 | 1.04e-59 | 207 |
| Msa1242560 | AT1G19850.1 | 41.667 | 300 | 149 | 11 | 2 | 281 | 95 | 388 | 1.11e-59 | 207 |
| Msa1242560 | AT5G37020.2 | 40.940 | 298 | 156 | 8 | 3 | 283 | 64 | 358 | 3.27e-59 | 204 |
| Msa1242560 | AT5G37020.1 | 40.940 | 298 | 156 | 8 | 3 | 283 | 64 | 358 | 6.96e-59 | 204 |
| Msa1242560 | AT5G20730.2 | 40.066 | 302 | 158 | 9 | 3 | 286 | 65 | 361 | 2.85e-57 | 201 |
| Msa1242560 | AT5G20730.3 | 39.934 | 303 | 158 | 9 | 3 | 286 | 65 | 362 | 3.68e-57 | 201 |
| Msa1242560 | AT5G20730.1 | 39.934 | 303 | 158 | 9 | 3 | 286 | 65 | 362 | 3.96e-57 | 201 |
| Msa1242560 | AT1G34310.1 | 35.986 | 289 | 168 | 6 | 4 | 281 | 70 | 352 | 3.05e-56 | 193 |
| Msa1242560 | AT2G33860.2 | 40.928 | 237 | 124 | 4 | 62 | 285 | 2 | 235 | 5.73e-56 | 189 |
| Msa1242560 | AT1G34170.1 | 38.144 | 291 | 161 | 8 | 4 | 281 | 68 | 352 | 1.09e-55 | 190 |
| Msa1242560 | AT1G35540.1 | 36.332 | 289 | 167 | 6 | 4 | 281 | 70 | 352 | 1.21e-55 | 192 |
| Msa1242560 | AT1G35240.1 | 36.678 | 289 | 166 | 7 | 4 | 281 | 70 | 352 | 2.13e-55 | 191 |
| Msa1242560 | AT1G30330.3 | 38.323 | 334 | 183 | 10 | 3 | 316 | 67 | 397 | 5.42e-55 | 194 |
| Msa1242560 | AT1G30330.2 | 38.323 | 334 | 183 | 10 | 3 | 316 | 67 | 397 | 5.42e-55 | 194 |
| Msa1242560 | AT1G30330.1 | 38.323 | 334 | 183 | 10 | 3 | 316 | 65 | 395 | 6.11e-55 | 194 |
| Msa1242560 | AT1G34410.1 | 34.395 | 314 | 180 | 8 | 4 | 306 | 70 | 368 | 2.04e-53 | 186 |
| Msa1242560 | AT1G34390.1 | 36.678 | 289 | 164 | 8 | 4 | 281 | 70 | 350 | 1.25e-51 | 181 |
| Msa1242560 | AT1G35520.1 | 34.256 | 289 | 173 | 6 | 4 | 281 | 70 | 352 | 4.91e-51 | 179 |
| Msa1242560 | AT1G34170.2 | 38.112 | 286 | 142 | 9 | 4 | 281 | 68 | 326 | 6.65e-51 | 177 |
| Msa1242560 | AT5G37020.3 | 43.644 | 236 | 116 | 6 | 62 | 283 | 31 | 263 | 9.14e-51 | 181 |
| Msa1242560 | AT1G34170.3 | 38.028 | 284 | 145 | 8 | 4 | 281 | 68 | 326 | 2.52e-50 | 177 |
| Msa1242560 | AT2G28350.1 | 32.059 | 340 | 167 | 8 | 4 | 281 | 44 | 381 | 7.21e-49 | 175 |
| Msa1242560 | AT2G28350.2 | 32.059 | 340 | 167 | 8 | 4 | 281 | 44 | 381 | 8.26e-49 | 174 |
| Msa1242560 | AT4G30080.1 | 31.250 | 368 | 190 | 12 | 1 | 309 | 53 | 416 | 5.55e-47 | 169 |
| Msa1242560 | AT1G77850.1 | 30.247 | 324 | 167 | 8 | 10 | 281 | 61 | 377 | 1.21e-39 | 148 |
| Msa1242560 | AT1G77850.2 | 30.247 | 324 | 167 | 8 | 10 | 281 | 61 | 377 | 1.22e-39 | 148 |
| Msa1242560 | AT1G43950.1 | 39.873 | 158 | 90 | 2 | 4 | 161 | 70 | 222 | 4.26e-33 | 123 |
| Msa1242560 | AT1G01030.2 | 36.458 | 96 | 60 | 1 | 56 | 151 | 50 | 144 | 9.80e-11 | 62.8 |
Find 79 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGACAAACCCTCTCAATATT+TGG | 0.276281 | 8_2:-26873652 | None:intergenic |
| AGTTGTGGGTGTTCAATTAA+AGG | 0.278442 | 8_2:+26870172 | Msa1242560:CDS |
| TGACATTAAGATCACCTTCT+TGG | 0.290335 | 8_2:-26873142 | None:intergenic |
| ATATCTACTTTGTGATATTC+AGG | 0.290568 | 8_2:-26873919 | None:intergenic |
| TTAGAAGGCAAATGATAGTT+AGG | 0.299166 | 8_2:-26870137 | None:intergenic |
| AGGGGAGAGAATGGTGAAAT+TGG | 0.305389 | 8_2:+26872725 | Msa1242560:intron |
| GTTGTCCATGCTGTTTCTAT+TGG | 0.311077 | 8_2:+26872848 | Msa1242560:CDS |
| CTAAAAGAGTAGATTTCATT+AGG | 0.340943 | 8_2:-26870702 | None:intergenic |
| GAGAATGGTGAAATTGGTAT+TGG | 0.352900 | 8_2:+26872731 | Msa1242560:CDS |
| CATCTATCTGCATGTTGCTT+TGG | 0.355107 | 8_2:-26870774 | None:intergenic |
| CCATGGTGGATTGAGCCCTT+TGG | 0.362112 | 8_2:+26873673 | Msa1242560:CDS |
| TTCTGAACCAGGCCACCTAA+TGG | 0.364231 | 8_2:-26873484 | None:intergenic |
| TTATTTGGTAAACGGAGAAT+TGG | 0.376233 | 8_2:-26873724 | None:intergenic |
| AGAGCACACTTTCTTACTAA+TGG | 0.376281 | 8_2:+26872462 | Msa1242560:CDS |
| GCAACAAGAATATGCATTAG+AGG | 0.392171 | 8_2:+26870659 | Msa1242560:intron |
| CATCTTCTCTTAGGTGCAAT+GGG | 0.393483 | 8_2:+26873621 | Msa1242560:intron |
| AGAATGGTGAAATTGGTATT+GGG | 0.394064 | 8_2:+26872732 | Msa1242560:CDS |
| TAGTGAGTTGCTCACTTCAA+TGG | 0.399903 | 8_2:+26870722 | Msa1242560:CDS |
| TGAATATCACAAAGTAGATA+TGG | 0.401352 | 8_2:+26873921 | Msa1242560:CDS |
| TATAGGTATGGTACAATAGT+TGG | 0.409092 | 8_2:+26873444 | Msa1242560:intron |
| AATGCCCTTCAGCATAATCT+TGG | 0.414690 | 8_2:-26873701 | None:intergenic |
| GAGGACAATCATGCACTTCA+TGG | 0.415546 | 8_2:+26870678 | Msa1242560:CDS |
| GATCTTGCATTGGTGGTTGA+AGG | 0.416950 | 8_2:-26871448 | None:intergenic |
| GCCACTAGATCTTGCATTGG+TGG | 0.421362 | 8_2:-26871455 | None:intergenic |
| TCTGAACCAGGCCACCTAAT+GGG | 0.429682 | 8_2:-26873483 | None:intergenic |
| TAACCCTCGTTAACAAAGTT+AGG | 0.433279 | 8_2:-26873757 | None:intergenic |
| CACACTTTCTTACTAATGGT+TGG | 0.440725 | 8_2:+26872466 | Msa1242560:CDS |
| CAGAGGAATCATAAATTCAA+AGG | 0.441039 | 8_2:-26873041 | None:intergenic |
| AACTGAGTAGTCTTTCTCAA+TGG | 0.461873 | 8_2:-26873080 | None:intergenic |
| ACATCTTCTCTTAGGTGCAA+TGG | 0.470200 | 8_2:+26873620 | Msa1242560:intron |
| ATTGATCCCATTAGGTGGCC+TGG | 0.478400 | 8_2:+26873477 | Msa1242560:CDS |
| TGTTATTGTAGGGGAGAGAA+TGG | 0.481096 | 8_2:+26872716 | Msa1242560:intron |
| ATGAAGATATTGATCCCATT+AGG | 0.481523 | 8_2:+26873469 | Msa1242560:CDS |
| AGAGGAATCATAAATTCAAA+GGG | 0.491970 | 8_2:-26873040 | None:intergenic |
| AAACATTCAACTTGGAGCAT+TGG | 0.497605 | 8_2:+26872820 | Msa1242560:CDS |
| CATTGAAATAATTATAGAAG+AGG | 0.502315 | 8_2:-26874054 | None:intergenic |
| ATGCCCTTCAGCATAATCTT+GGG | 0.510709 | 8_2:-26873700 | None:intergenic |
| TTATTGATATCAGATATAGC+TGG | 0.516270 | 8_2:+26873883 | Msa1242560:intron |
| TGCATGAATCTCCAGGAAGA+AGG | 0.528511 | 8_2:-26872512 | None:intergenic |
| AGGACATGCATGGAATTGAA+TGG | 0.531700 | 8_2:+26871480 | Msa1242560:CDS |
| GAAGGTCAACAATACAATGC+TGG | 0.537226 | 8_2:+26873949 | Msa1242560:CDS |
| ATCTTGCATTGGTGGTTGAA+GGG | 0.538894 | 8_2:-26871447 | None:intergenic |
| TCACAAAGTAGATATGGACT+TGG | 0.552268 | 8_2:+26873927 | Msa1242560:CDS |
| CATAATCTTGGGAGATCCAA+AGG | 0.553083 | 8_2:-26873689 | None:intergenic |
| TCAAGTCAAAACATTCAACT+TGG | 0.553845 | 8_2:+26872812 | Msa1242560:CDS |
| ATTGAGAAAGACTACTCAGT+TGG | 0.556162 | 8_2:+26873082 | Msa1242560:CDS |
| ATCTCCCAAGATTATGCTGA+AGG | 0.559989 | 8_2:+26873696 | Msa1242560:CDS |
| TAAACTAAAACAAACCAGAT+GGG | 0.561509 | 8_2:-26870802 | None:intergenic |
| TTCGCCACTAGATCTTGCAT+TGG | 0.562318 | 8_2:-26871458 | None:intergenic |
| ATACATCTCCATTCTGAACC+AGG | 0.563789 | 8_2:-26873495 | None:intergenic |
| TTCAGAATGGAGATGTATCA+AGG | 0.571681 | 8_2:+26873500 | Msa1242560:CDS |
| TACATTATTTCCATTGCTCG+AGG | 0.574951 | 8_2:+26870326 | Msa1242560:CDS |
| AAATAACTAACCTCGAGCAA+TGG | 0.576524 | 8_2:-26870336 | None:intergenic |
| ATATTGAGAGGGTTTGTCCA+TGG | 0.576814 | 8_2:+26873656 | Msa1242560:CDS |
| TTTCATACCAAATATTGAGA+GGG | 0.580552 | 8_2:+26873645 | Msa1242560:CDS |
| TATTGATATCAGATATAGCT+GGG | 0.580751 | 8_2:+26873884 | Msa1242560:intron |
| TTAGGTGGCCTGGTTCAGAA+TGG | 0.591720 | 8_2:+26873487 | Msa1242560:CDS |
| ATTTCATACCAAATATTGAG+AGG | 0.595944 | 8_2:+26873644 | Msa1242560:CDS |
| AGACTACTCAGTTGGAAGGA+GGG | 0.596500 | 8_2:+26873090 | Msa1242560:CDS |
| AAACTAAAACAAACCAGATG+GGG | 0.600446 | 8_2:-26870801 | None:intergenic |
| AAGACTACTCAGTTGGAAGG+AGG | 0.602756 | 8_2:+26873089 | Msa1242560:CDS |
| TTGAGAGGGTTTGTCCATGG+TGG | 0.604041 | 8_2:+26873659 | Msa1242560:CDS |
| AGAAAGACTACTCAGTTGGA+AGG | 0.604367 | 8_2:+26873086 | Msa1242560:CDS |
| ATAATCTTGGGAGATCCAAA+GGG | 0.609525 | 8_2:-26873688 | None:intergenic |
| AATGCAAGATCTAGTGGCGA+AGG | 0.612003 | 8_2:+26871460 | Msa1242560:CDS |
| AACTTCCAATAGAAACAGCA+TGG | 0.614686 | 8_2:-26872853 | None:intergenic |
| ACCACCAATGCAAGATCTAG+TGG | 0.615505 | 8_2:+26871454 | Msa1242560:CDS |
| AAAGTAGATATGGACTTGGA+AGG | 0.619940 | 8_2:+26873931 | Msa1242560:CDS |
| GTACCTAACTTTGTTAACGA+GGG | 0.622794 | 8_2:+26873754 | Msa1242560:CDS |
| AAGTTGAAGGATGTCCAAGA+AGG | 0.624899 | 8_2:+26873128 | Msa1242560:CDS |
| TGTACCTAACTTTGTTAACG+AGG | 0.642706 | 8_2:+26873753 | Msa1242560:CDS |
| TCTCCCAAGATTATGCTGAA+GGG | 0.644859 | 8_2:+26873697 | Msa1242560:CDS |
| AAGATATTGATCCCATTAGG+TGG | 0.658591 | 8_2:+26873472 | Msa1242560:CDS |
| AACTAAAACAAACCAGATGG+GGG | 0.662728 | 8_2:-26870800 | None:intergenic |
| CCAAAGGGCTCAATCCACCA+TGG | 0.672491 | 8_2:-26873673 | None:intergenic |
| TCAATGGAAACAAGTACACA+TGG | 0.685853 | 8_2:+26870738 | Msa1242560:CDS |
| CAGATGTTGTCTGAAGTTGA+AGG | 0.687407 | 8_2:+26873115 | Msa1242560:CDS |
| CTAGTGGCGAAGGACATGCA+TGG | 0.702589 | 8_2:+26871470 | Msa1242560:CDS |
| ATGGAAACAAGTACACATGG+TGG | 0.710626 | 8_2:+26870741 | Msa1242560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATATATATATATATTTT+TGG | + | chr8_2:26872079-26872098 | Msa1242560:intron | 0.0% |
| !!! | ATATATATATATATATTTTT+GGG | + | chr8_2:26872080-26872099 | Msa1242560:intron | 0.0% |
| !!! | ATATATTTTATAAAAACATG+TGG | - | chr8_2:26870495-26870514 | None:intergenic | 10.0% |
| !! | CAAAAAAATTTAATTCTATA+GGG | - | chr8_2:26870967-26870986 | None:intergenic | 10.0% |
| !! | ACAAAAAAATTTAATTCTAT+AGG | - | chr8_2:26870968-26870987 | None:intergenic | 10.0% |
| !!! | AAAAATAAACGAATTTTTTT+TGG | - | chr8_2:26871275-26871294 | None:intergenic | 10.0% |
| !! | AAAAAAACGAAAATAAAATA+TGG | - | chr8_2:26871940-26871959 | None:intergenic | 10.0% |
| !! | GTTATAATTAAATAACTTAA+AGG | + | chr8_2:26872232-26872251 | Msa1242560:intron | 10.0% |
| !! | AAAATGAATAATAATGTTAT+TGG | - | chr8_2:26872650-26872669 | None:intergenic | 10.0% |
| !!! | ATCGTTTTTATAAAAAAGTA+TGG | - | chr8_2:26870442-26870461 | None:intergenic | 15.0% |
| !!! | AATTTATGGTTTTTGATATT+TGG | - | chr8_2:26871168-26871187 | None:intergenic | 15.0% |
| !! | TTTGTTTCATATAAATAGAA+AGG | + | chr8_2:26871628-26871647 | Msa1242560:intron | 15.0% |
| !! | TTGTTTCATATAAATAGAAA+GGG | + | chr8_2:26871629-26871648 | Msa1242560:intron | 15.0% |
| !! | AGAGAAAAATAAATAAAACT+TGG | - | chr8_2:26872344-26872363 | None:intergenic | 15.0% |
| !!! | AAATAAAACAGTTGTATTTT+GGG | - | chr8_2:26872367-26872386 | None:intergenic | 15.0% |
| !! | ATAATTCTTATGTTATTGTA+GGG | + | chr8_2:26872706-26872725 | Msa1242560:intron | 15.0% |
| !! | ATTTCAAATTGTAAAATCAT+TGG | - | chr8_2:26872912-26872931 | None:intergenic | 15.0% |
| !! | GTATTTACTAAAATTCATAT+GGG | - | chr8_2:26873276-26873295 | None:intergenic | 15.0% |
| !! | TGTATTTACTAAAATTCATA+TGG | - | chr8_2:26873277-26873296 | None:intergenic | 15.0% |
| !!! | ACATTTTTGTTTTACTTTAT+AGG | + | chr8_2:26873427-26873446 | Msa1242560:intron | 15.0% |
| !! | TGTATTAAATAAAACATCAT+GGG | - | chr8_2:26873562-26873581 | None:intergenic | 15.0% |
| !! | ATGTATTAAATAAAACATCA+TGG | - | chr8_2:26873563-26873582 | None:intergenic | 15.0% |
| !!! | TCTTTCATTTCTTAAATTTT+AGG | + | chr8_2:26873788-26873807 | Msa1242560:intron | 15.0% |
| !! | ATATACTTATTTGGTATTGT+AGG | + | chr8_2:26870269-26870288 | Msa1242560:intron | 20.0% |
| !! | AATATAATTTCGGTTATTAC+TGG | + | chr8_2:26870627-26870646 | Msa1242560:intron | 20.0% |
| !! | ATACACAATAACATTATCAA+AGG | - | chr8_2:26870847-26870866 | None:intergenic | 20.0% |
| !! | TATATGTGTGTATATATACA+AGG | + | chr8_2:26870924-26870943 | Msa1242560:intron | 20.0% |
| !! | TAAATTCATAAAAATATGCG+AGG | - | chr8_2:26871023-26871042 | None:intergenic | 20.0% |
| !! | CAAAAACCATAAATTCTATA+CGG | + | chr8_2:26871173-26871192 | Msa1242560:intron | 20.0% |
| !!! | TGTTTTTGTTACTTTGTTAT+AGG | + | chr8_2:26871418-26871437 | Msa1242560:intron | 20.0% |
| !! | TGTTTCATATAAATAGAAAG+GGG | + | chr8_2:26871630-26871649 | Msa1242560:intron | 20.0% |
| !! | AAAACTTAAAACGACTTAAT+TGG | + | chr8_2:26871727-26871746 | Msa1242560:intron | 20.0% |
| !! | AAATATGGAAAACAAAAGTT+AGG | - | chr8_2:26871925-26871944 | None:intergenic | 20.0% |
| !! | AAGGAAAAATATGTATAAGA+GGG | - | chr8_2:26871990-26872009 | None:intergenic | 20.0% |
| !! | AAAGGAAAAATATGTATAAG+AGG | - | chr8_2:26871991-26872010 | None:intergenic | 20.0% |
| !!! | TTTTCTCTGAAGAAATTTAA+CGG | - | chr8_2:26872276-26872295 | None:intergenic | 20.0% |
| !! | ATAAATAAAACTTGGAGAAT+GGG | - | chr8_2:26872336-26872355 | None:intergenic | 20.0% |
| !! | AATAAATAAAACTTGGAGAA+TGG | - | chr8_2:26872337-26872356 | None:intergenic | 20.0% |
| !!! | GAAATAAAACAGTTGTATTT+TGG | - | chr8_2:26872368-26872387 | None:intergenic | 20.0% |
| !!! | TTTTATTTCATTGTATTCCA+TGG | + | chr8_2:26872566-26872585 | Msa1242560:intron | 20.0% |
| !! | TTTATTTCATTGTATTCCAT+GGG | + | chr8_2:26872567-26872586 | Msa1242560:intron | 20.0% |
| !! | GATAATTCTTATGTTATTGT+AGG | + | chr8_2:26872705-26872724 | Msa1242560:intron | 20.0% |
| !! | TAATTCTTATGTTATTGTAG+GGG | + | chr8_2:26872707-26872726 | Msa1242560:intron | 20.0% |
| !! | ATCTTAATGTCAAATTACTA+TGG | + | chr8_2:26873153-26873172 | Msa1242560:intron | 20.0% |
| !! | ATGATACTTATAGTCTATAA+AGG | + | chr8_2:26873376-26873395 | Msa1242560:intron | 20.0% |
| !!! | TTTGTTTTACTTTATAGGTA+TGG | + | chr8_2:26873432-26873451 | Msa1242560:intron | 20.0% |
| !! | ATTTAATTACATCTTCTCTT+AGG | + | chr8_2:26873612-26873631 | Msa1242560:intron | 20.0% |
| !! | ACTACGCATAAAATTTTAGA+AGG | - | chr8_2:26870155-26870174 | None:intergenic | 25.0% |
| !! | TAAAATTTTATGCGTAGTTG+TGG | + | chr8_2:26870157-26870176 | Msa1242560:CDS | 25.0% |
| !! | AAAATTTTATGCGTAGTTGT+GGG | + | chr8_2:26870158-26870177 | Msa1242560:CDS | 25.0% |
| !! | GAGGTTAGTTATTTCAAATT+TGG | + | chr8_2:26870345-26870364 | Msa1242560:intron | 25.0% |
| !!! | TAATTTTAATCTCTCTCAGT+AGG | + | chr8_2:26870462-26870481 | Msa1242560:intron | 25.0% |
| ! | CTAAAAGAGTAGATTTCATT+AGG | - | chr8_2:26870705-26870724 | None:intergenic | 25.0% |
| ! | TAAACTAAAACAAACCAGAT+GGG | - | chr8_2:26870805-26870824 | None:intergenic | 25.0% |
| ! | ATAAACTAAAACAAACCAGA+TGG | - | chr8_2:26870806-26870825 | None:intergenic | 25.0% |
| ! | AGTCCTTATAAAGCAAAATA+AGG | + | chr8_2:26871113-26871132 | Msa1242560:intron | 25.0% |
| !!! | CATCCTTATTTTGCTTTATA+AGG | - | chr8_2:26871119-26871138 | None:intergenic | 25.0% |
| ! | TAGATAGATACATACATTCA+TGG | - | chr8_2:26871233-26871252 | None:intergenic | 25.0% |
| !! | AATTTTCGACATATTTATCG+TGG | + | chr8_2:26871503-26871522 | Msa1242560:CDS | 25.0% |
| !! | TGTCAATCATAAACTCTTTT+AGG | - | chr8_2:26871577-26871596 | None:intergenic | 25.0% |
| ! | GTTTCATATAAATAGAAAGG+GGG | + | chr8_2:26871631-26871650 | Msa1242560:intron | 25.0% |
| ! | TTAAAACGACTTAATTGGTA+TGG | + | chr8_2:26871732-26871751 | Msa1242560:intron | 25.0% |
| ! | AATTAACTTAAAGACCTAAG+TGG | + | chr8_2:26871786-26871805 | Msa1242560:intron | 25.0% |
| !!! | TAAGTTTTTTTGTACCACTT+AGG | - | chr8_2:26871803-26871822 | None:intergenic | 25.0% |
| ! | TAAGTGGTACAAAAAAACTT+AGG | + | chr8_2:26871802-26871821 | Msa1242560:intron | 25.0% |
| ! | AAGTGGTACAAAAAAACTTA+GGG | + | chr8_2:26871803-26871822 | Msa1242560:intron | 25.0% |
| !!! | TCGTTTTTTTTTTCCTTTTG+AGG | + | chr8_2:26871950-26871969 | Msa1242560:intron | 25.0% |
| !!! | CGTTTTTTTTTTCCTTTTGA+GGG | + | chr8_2:26871951-26871970 | Msa1242560:intron | 25.0% |
| ! | AGGAAAAATATGTATAAGAG+GGG | - | chr8_2:26871989-26872008 | None:intergenic | 25.0% |
| !!! | TATATATATTTTTGGGTGAG+CGG | + | chr8_2:26872087-26872106 | Msa1242560:intron | 25.0% |
| !!! | CAACTGTTTTATTTCAAGAA+TGG | + | chr8_2:26872373-26872392 | Msa1242560:intron | 25.0% |
| !! | AAATGAATTTTTGAATCCCA+TGG | - | chr8_2:26872586-26872605 | None:intergenic | 25.0% |
| ! | TTATGTCATAGAAATTTACG+TGG | + | chr8_2:26872683-26872702 | Msa1242560:intron | 25.0% |
| !! | ACTAATACACATCTTTTGTA+GGG | + | chr8_2:26873012-26873031 | Msa1242560:intron | 25.0% |
| ! | AGAGGAATCATAAATTCAAA+GGG | - | chr8_2:26873043-26873062 | None:intergenic | 25.0% |
| ! | ATTTCATACCAAATATTGAG+AGG | + | chr8_2:26873644-26873663 | Msa1242560:CDS | 25.0% |
| ! | TTTCATACCAAATATTGAGA+GGG | + | chr8_2:26873645-26873664 | Msa1242560:CDS | 25.0% |
| !!! | CATCTGTTTTATTTGGTAAA+CGG | - | chr8_2:26873735-26873754 | None:intergenic | 25.0% |
| !!! | TTAGGTACATCTGTTTTATT+TGG | - | chr8_2:26873742-26873761 | None:intergenic | 25.0% |
| ! | TTATTGATATCAGATATAGC+TGG | + | chr8_2:26873883-26873902 | Msa1242560:intron | 25.0% |
| ! | TATTGATATCAGATATAGCT+GGG | + | chr8_2:26873884-26873903 | Msa1242560:intron | 25.0% |
| ! | ATATCTACTTTGTGATATTC+AGG | - | chr8_2:26873922-26873941 | None:intergenic | 25.0% |
| ! | TGAATATCACAAAGTAGATA+TGG | + | chr8_2:26873921-26873940 | Msa1242560:CDS | 25.0% |
| TTAGAAGGCAAATGATAGTT+AGG | - | chr8_2:26870140-26870159 | None:intergenic | 30.0% | |
| AAACTAAAACAAACCAGATG+GGG | - | chr8_2:26870804-26870823 | None:intergenic | 30.0% | |
| TATACACACATATACGATGA+AGG | - | chr8_2:26870918-26870937 | None:intergenic | 30.0% | |
| AGATGTCCGTATAGAATTTA+TGG | - | chr8_2:26871182-26871201 | None:intergenic | 30.0% | |
| !!! | CTCTTTTAGGTTAACAATGA+AGG | - | chr8_2:26871564-26871583 | None:intergenic | 30.0% |
| ! | TTTTAAACTCTCGTAGACAT+TGG | - | chr8_2:26871711-26871730 | None:intergenic | 30.0% |
| ! | AACGTATGCATGATTTTGTT+CGG | + | chr8_2:26871869-26871888 | Msa1242560:intron | 30.0% |
| !!! | TTTTTTTCCTTTTGAGGGTT+CGG | + | chr8_2:26871956-26871975 | Msa1242560:intron | 30.0% |
| GAAAAATATGTATAAGAGGG+GGG | - | chr8_2:26871987-26872006 | None:intergenic | 30.0% | |
| GGAAAAATATGTATAAGAGG+GGG | - | chr8_2:26871988-26872007 | None:intergenic | 30.0% | |
| TAACGGCTAAATTACATCAA+AGG | - | chr8_2:26872259-26872278 | None:intergenic | 30.0% | |
| AGAATGGTGAAATTGGTATT+GGG | + | chr8_2:26872732-26872751 | Msa1242560:CDS | 30.0% | |
| !!! | TTTTGACTTGATGATAGTTG+AGG | - | chr8_2:26872803-26872822 | None:intergenic | 30.0% |
| TCAAGTCAAAACATTCAACT+TGG | + | chr8_2:26872812-26872831 | Msa1242560:CDS | 30.0% | |
| ! | CACTAATACACATCTTTTGT+AGG | + | chr8_2:26873011-26873030 | Msa1242560:intron | 30.0% |
| CAGAGGAATCATAAATTCAA+AGG | - | chr8_2:26873044-26873063 | None:intergenic | 30.0% | |
| TATAGGTATGGTACAATAGT+TGG | + | chr8_2:26873444-26873463 | Msa1242560:intron | 30.0% | |
| ATGAAGATATTGATCCCATT+AGG | + | chr8_2:26873469-26873488 | Msa1242560:CDS | 30.0% | |
| TTATTTGGTAAACGGAGAAT+TGG | - | chr8_2:26873727-26873746 | None:intergenic | 30.0% | |
| AGTTGTGGGTGTTCAATTAA+AGG | + | chr8_2:26870172-26870191 | Msa1242560:CDS | 35.0% | |
| TACATTATTTCCATTGCTCG+AGG | + | chr8_2:26870326-26870345 | Msa1242560:CDS | 35.0% | |
| AAATAACTAACCTCGAGCAA+TGG | - | chr8_2:26870339-26870358 | None:intergenic | 35.0% | |
| GCAACAAGAATATGCATTAG+AGG | + | chr8_2:26870659-26870678 | Msa1242560:intron | 35.0% | |
| TCAATGGAAACAAGTACACA+TGG | + | chr8_2:26870738-26870757 | Msa1242560:CDS | 35.0% | |
| AACTAAAACAAACCAGATGG+GGG | - | chr8_2:26870803-26870822 | None:intergenic | 35.0% | |
| ! | AAATAGAAAGGGGGATGTTT+TGG | + | chr8_2:26871640-26871659 | Msa1242560:intron | 35.0% |
| ! | AATAGAAAGGGGGATGTTTT+GGG | + | chr8_2:26871641-26871660 | Msa1242560:intron | 35.0% |
| TTCTTCACACTGTTTAGACA+CGG | + | chr8_2:26871837-26871856 | Msa1242560:intron | 35.0% | |
| ! | ACGTATGCATGATTTTGTTC+GGG | + | chr8_2:26871870-26871889 | Msa1242560:intron | 35.0% |
| !!! | GGTTTTTTTAGGGACAGTTA+TGG | + | chr8_2:26871895-26871914 | Msa1242560:intron | 35.0% |
| !!! | TTTTTTCTGAATCAAGAGCG+AGG | - | chr8_2:26872178-26872197 | None:intergenic | 35.0% |
| AGAGCACACTTTCTTACTAA+TGG | + | chr8_2:26872462-26872481 | Msa1242560:CDS | 35.0% | |
| CACACTTTCTTACTAATGGT+TGG | + | chr8_2:26872466-26872485 | Msa1242560:CDS | 35.0% | |
| ! | AACTCTAAAAACCTTCTTCC+TGG | + | chr8_2:26872501-26872520 | Msa1242560:CDS | 35.0% |
| ACAAAAATGCATGAATCTCC+AGG | - | chr8_2:26872522-26872541 | None:intergenic | 35.0% | |
| ! | GAGATTCATGCATTTTTGTC+AGG | + | chr8_2:26872523-26872542 | Msa1242560:CDS | 35.0% |
| GAGAATGGTGAAATTGGTAT+TGG | + | chr8_2:26872731-26872750 | Msa1242560:CDS | 35.0% | |
| ! | GAGGCAATTTTGTGCATATA+TGG | - | chr8_2:26872784-26872803 | None:intergenic | 35.0% |
| AAACATTCAACTTGGAGCAT+TGG | + | chr8_2:26872820-26872839 | Msa1242560:CDS | 35.0% | |
| AACTTCCAATAGAAACAGCA+TGG | - | chr8_2:26872856-26872875 | None:intergenic | 35.0% | |
| AATCATTGGTATCTCACCAA+GGG | - | chr8_2:26872898-26872917 | None:intergenic | 35.0% | |
| AAATCATTGGTATCTCACCA+AGG | - | chr8_2:26872899-26872918 | None:intergenic | 35.0% | |
| AACTGAGTAGTCTTTCTCAA+TGG | - | chr8_2:26873083-26873102 | None:intergenic | 35.0% | |
| ATTGAGAAAGACTACTCAGT+TGG | + | chr8_2:26873082-26873101 | Msa1242560:CDS | 35.0% | |
| TGACATTAAGATCACCTTCT+TGG | - | chr8_2:26873145-26873164 | None:intergenic | 35.0% | |
| AAGATATTGATCCCATTAGG+TGG | + | chr8_2:26873472-26873491 | Msa1242560:CDS | 35.0% | |
| TTCAGAATGGAGATGTATCA+AGG | + | chr8_2:26873500-26873519 | Msa1242560:CDS | 35.0% | |
| ATAATCTTGGGAGATCCAAA+GGG | - | chr8_2:26873691-26873710 | None:intergenic | 35.0% | |
| TGTACCTAACTTTGTTAACG+AGG | + | chr8_2:26873753-26873772 | Msa1242560:CDS | 35.0% | |
| GTACCTAACTTTGTTAACGA+GGG | + | chr8_2:26873754-26873773 | Msa1242560:CDS | 35.0% | |
| TAACCCTCGTTAACAAAGTT+AGG | - | chr8_2:26873760-26873779 | None:intergenic | 35.0% | |
| TCACAAAGTAGATATGGACT+TGG | + | chr8_2:26873927-26873946 | Msa1242560:CDS | 35.0% | |
| AAAGTAGATATGGACTTGGA+AGG | + | chr8_2:26873931-26873950 | Msa1242560:CDS | 35.0% | |
| TAGTGAGTTGCTCACTTCAA+TGG | + | chr8_2:26870722-26870741 | Msa1242560:CDS | 40.0% | |
| ATGGAAACAAGTACACATGG+TGG | + | chr8_2:26870741-26870760 | Msa1242560:CDS | 40.0% | |
| ! | CATCTATCTGCATGTTGCTT+TGG | - | chr8_2:26870777-26870796 | None:intergenic | 40.0% |
| ACATCTTGAACTCATCTGCA+GGG | + | chr8_2:26871196-26871215 | Msa1242560:intron | 40.0% | |
| ! | ATCTTGCATTGGTGGTTGAA+GGG | - | chr8_2:26871450-26871469 | None:intergenic | 40.0% |
| AGGACATGCATGGAATTGAA+TGG | + | chr8_2:26871480-26871499 | Msa1242560:CDS | 40.0% | |
| ! | ATAGAAAGGGGGATGTTTTG+GGG | + | chr8_2:26871642-26871661 | Msa1242560:intron | 40.0% |
| !! | TTGGGGTTGATGGTATTGTT+TGG | + | chr8_2:26871659-26871678 | Msa1242560:intron | 40.0% |
| GGTACAAAAAAACTTAGGGC+TGG | + | chr8_2:26871807-26871826 | Msa1242560:intron | 40.0% | |
| GTGTCTAAACAGTGTGAAGA+AGG | - | chr8_2:26871838-26871857 | None:intergenic | 40.0% | |
| ! | CGTATGCATGATTTTGTTCG+GGG | + | chr8_2:26871871-26871890 | Msa1242560:intron | 40.0% |
| ! | GTATGCATGATTTTGTTCGG+GGG | + | chr8_2:26871872-26871891 | Msa1242560:intron | 40.0% |
| ! | TATGCATGATTTTGTTCGGG+GGG | + | chr8_2:26871873-26871892 | Msa1242560:intron | 40.0% |
| TGTTATTGTAGGGGAGAGAA+TGG | + | chr8_2:26872716-26872735 | Msa1242560:intron | 40.0% | |
| !! | GTTGTCCATGCTGTTTCTAT+TGG | + | chr8_2:26872848-26872867 | Msa1242560:CDS | 40.0% |
| ! | GACTCAGCATAAGTTTTCAG+AGG | - | chr8_2:26873061-26873080 | None:intergenic | 40.0% |
| AGAAAGACTACTCAGTTGGA+AGG | + | chr8_2:26873086-26873105 | Msa1242560:CDS | 40.0% | |
| ! | CAGATGTTGTCTGAAGTTGA+AGG | + | chr8_2:26873115-26873134 | Msa1242560:CDS | 40.0% |
| AAGTTGAAGGATGTCCAAGA+AGG | + | chr8_2:26873128-26873147 | Msa1242560:CDS | 40.0% | |
| ATACATCTCCATTCTGAACC+AGG | - | chr8_2:26873498-26873517 | None:intergenic | 40.0% | |
| ACATCTTCTCTTAGGTGCAA+TGG | + | chr8_2:26873620-26873639 | Msa1242560:intron | 40.0% | |
| CATCTTCTCTTAGGTGCAAT+GGG | + | chr8_2:26873621-26873640 | Msa1242560:intron | 40.0% | |
| GGACAAACCCTCTCAATATT+TGG | - | chr8_2:26873655-26873674 | None:intergenic | 40.0% | |
| ATATTGAGAGGGTTTGTCCA+TGG | + | chr8_2:26873656-26873675 | Msa1242560:CDS | 40.0% | |
| CATAATCTTGGGAGATCCAA+AGG | - | chr8_2:26873692-26873711 | None:intergenic | 40.0% | |
| ATCTCCCAAGATTATGCTGA+AGG | + | chr8_2:26873696-26873715 | Msa1242560:CDS | 40.0% | |
| TCTCCCAAGATTATGCTGAA+GGG | + | chr8_2:26873697-26873716 | Msa1242560:CDS | 40.0% | |
| ATGCCCTTCAGCATAATCTT+GGG | - | chr8_2:26873703-26873722 | None:intergenic | 40.0% | |
| AATGCCCTTCAGCATAATCT+TGG | - | chr8_2:26873704-26873723 | None:intergenic | 40.0% | |
| GAAGGTCAACAATACAATGC+TGG | + | chr8_2:26873949-26873968 | Msa1242560:CDS | 40.0% | |
| GAGGACAATCATGCACTTCA+TGG | + | chr8_2:26870678-26870697 | Msa1242560:CDS | 45.0% | |
| GACATCTTGAACTCATCTGC+AGG | + | chr8_2:26871195-26871214 | Msa1242560:intron | 45.0% | |
| ! | GATCTTGCATTGGTGGTTGA+AGG | - | chr8_2:26871451-26871470 | None:intergenic | 45.0% |
| ACCACCAATGCAAGATCTAG+TGG | + | chr8_2:26871454-26871473 | Msa1242560:CDS | 45.0% | |
| TTCGCCACTAGATCTTGCAT+TGG | - | chr8_2:26871461-26871480 | None:intergenic | 45.0% | |
| AATGCAAGATCTAGTGGCGA+AGG | + | chr8_2:26871460-26871479 | Msa1242560:CDS | 45.0% | |
| CACACTGTTTAGACACGGTT+TGG | + | chr8_2:26871842-26871861 | Msa1242560:intron | 45.0% | |
| !! | CTGTTTAGACACGGTTTGGT+AGG | + | chr8_2:26871846-26871865 | Msa1242560:intron | 45.0% |
| ! | ATGCATGATTTTGTTCGGGG+GGG | + | chr8_2:26871874-26871893 | Msa1242560:intron | 45.0% |
| !!! | TTGTTCGGGGGGGTTTTTTT+AGG | + | chr8_2:26871884-26871903 | Msa1242560:intron | 45.0% |
| !!! | TGTTCGGGGGGGTTTTTTTA+GGG | + | chr8_2:26871885-26871904 | Msa1242560:intron | 45.0% |
| !! | TTCCTTTTGAGGGTTCGGTT+TGG | + | chr8_2:26871961-26871980 | Msa1242560:intron | 45.0% |
| TGCATGAATCTCCAGGAAGA+AGG | - | chr8_2:26872515-26872534 | None:intergenic | 45.0% | |
| AGGGGAGAGAATGGTGAAAT+TGG | + | chr8_2:26872725-26872744 | Msa1242560:intron | 45.0% | |
| TATCTCACCAAGGGTGGTAT+TGG | - | chr8_2:26872889-26872908 | None:intergenic | 45.0% | |
| AAGACTACTCAGTTGGAAGG+AGG | + | chr8_2:26873089-26873108 | Msa1242560:CDS | 45.0% | |
| AGACTACTCAGTTGGAAGGA+GGG | + | chr8_2:26873090-26873109 | Msa1242560:CDS | 45.0% | |
| !! | AATATAATAATATACTTATT+TGG | + | chr8_2:26870260-26870279 | Msa1242560:intron | 5.0% |
| !!! | TTTTAATTTAAATAAAGTTA+TGG | - | chr8_2:26870557-26870576 | None:intergenic | 5.0% |
| !! | AAAAAAAATGAATATAATTT+CGG | + | chr8_2:26870617-26870636 | Msa1242560:intron | 5.0% |
| !! | TATATATATAGAATAAAAAA+AGG | - | chr8_2:26872009-26872028 | None:intergenic | 5.0% |
| AGATAGATGCTTCCCCCATC+TGG | + | chr8_2:26870788-26870807 | Msa1242560:CDS | 50.0% | |
| GCCACTAGATCTTGCATTGG+TGG | - | chr8_2:26871458-26871477 | None:intergenic | 50.0% | |
| !!! | TATTTTTGGGTGAGCGGCAG+AGG | + | chr8_2:26872093-26872112 | Msa1242560:intron | 50.0% |
| ! | AGAGGATTTGAGTTCCCTGG+AGG | + | chr8_2:26872111-26872130 | Msa1242560:intron | 50.0% |
| GGAAGACATCAAAGAGCCGT+TGG | - | chr8_2:26872157-26872176 | None:intergenic | 50.0% | |
| TCCATGTCCAATACCACCCT+TGG | + | chr8_2:26872879-26872898 | Msa1242560:intron | 50.0% | |
| ! | ACCAAGGGTGGTATTGGACA+TGG | - | chr8_2:26872883-26872902 | None:intergenic | 50.0% |
| CATTGGTATCTCACCAAGGG+TGG | - | chr8_2:26872895-26872914 | None:intergenic | 50.0% | |
| ATTGATCCCATTAGGTGGCC+TGG | + | chr8_2:26873477-26873496 | Msa1242560:CDS | 50.0% | |
| TCTGAACCAGGCCACCTAAT+GGG | - | chr8_2:26873486-26873505 | None:intergenic | 50.0% | |
| TTCTGAACCAGGCCACCTAA+TGG | - | chr8_2:26873487-26873506 | None:intergenic | 50.0% | |
| TTAGGTGGCCTGGTTCAGAA+TGG | + | chr8_2:26873487-26873506 | Msa1242560:CDS | 50.0% | |
| TTGAGAGGGTTTGTCCATGG+TGG | + | chr8_2:26873659-26873678 | Msa1242560:CDS | 50.0% | |
| CTAGTGGCGAAGGACATGCA+TGG | + | chr8_2:26871470-26871489 | Msa1242560:CDS | 55.0% | |
| !!! | GGGGGATGTTTTGGGGTTGA+TGG | + | chr8_2:26871649-26871668 | Msa1242560:intron | 55.0% |
| GGCCAAACCGAACCCTCAAA+AGG | - | chr8_2:26871966-26871985 | None:intergenic | 55.0% | |
| ! | GGCAGAGGATTTGAGTTCCC+TGG | + | chr8_2:26872108-26872127 | Msa1242560:intron | 55.0% |
| GTTGGACATCCCGACTAGGT+CGG | - | chr8_2:26872139-26872158 | None:intergenic | 55.0% | |
| GACCTAGTCGGGATGTCCAA+CGG | + | chr8_2:26872138-26872157 | Msa1242560:intron | 55.0% | |
| CCAAAGGGCTCAATCCACCA+TGG | - | chr8_2:26873676-26873695 | None:intergenic | 55.0% | |
| !! | CCATGGTGGATTGAGCCCTT+TGG | + | chr8_2:26873673-26873692 | Msa1242560:CDS | 55.0% |
| AGCCGTTGGACATCCCGACT+AGG | - | chr8_2:26872143-26872162 | None:intergenic | 60.0% | |
| CGACTAGGTCGGCACCTCCA+GGG | - | chr8_2:26872128-26872147 | None:intergenic | 65.0% | |
| !! | CCTGGAGGTGCCGACCTAGT+CGG | + | chr8_2:26872126-26872145 | Msa1242560:intron | 65.0% |
| !! | CTGGAGGTGCCGACCTAGTC+GGG | + | chr8_2:26872127-26872146 | Msa1242560:intron | 65.0% |
| CCGACTAGGTCGGCACCTCC+AGG | - | chr8_2:26872129-26872148 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 26870128 | 26874065 | 26870128 | ID=Msa1242560;Name=Msa1242560 |
| chr8_2 | mRNA | 26870128 | 26874065 | 26870128 | ID=Msa1242560-mRNA-1;Parent=Msa1242560;Name=Msa1242560-mRNA-1;_AED=0.12;_eAED=0.13;_QI=0|0|0|1|0.88|0.9|10|0|366 |
| chr8_2 | exon | 26870128 | 26870193 | 26870128 | ID=Msa1242560-mRNA-1:exon:9416;Parent=Msa1242560-mRNA-1 |
| chr8_2 | exon | 26870291 | 26870347 | 26870291 | ID=Msa1242560-mRNA-1:exon:9417;Parent=Msa1242560-mRNA-1 |
| chr8_2 | exon | 26870660 | 26870809 | 26870660 | ID=Msa1242560-mRNA-1:exon:9418;Parent=Msa1242560-mRNA-1 |
| chr8_2 | exon | 26871440 | 26871524 | 26871440 | ID=Msa1242560-mRNA-1:exon:9419;Parent=Msa1242560-mRNA-1 |
| chr8_2 | exon | 26872454 | 26872544 | 26872454 | ID=Msa1242560-mRNA-1:exon:9420;Parent=Msa1242560-mRNA-1 |
| chr8_2 | exon | 26872727 | 26872876 | 26872727 | ID=Msa1242560-mRNA-1:exon:9421;Parent=Msa1242560-mRNA-1 |
| chr8_2 | exon | 26873033 | 26873149 | 26873033 | ID=Msa1242560-mRNA-1:exon:9422;Parent=Msa1242560-mRNA-1 |
| chr8_2 | exon | 26873449 | 26873521 | 26873449 | ID=Msa1242560-mRNA-1:exon:9423;Parent=Msa1242560-mRNA-1 |
| chr8_2 | exon | 26873634 | 26873775 | 26873634 | ID=Msa1242560-mRNA-1:exon:9424;Parent=Msa1242560-mRNA-1 |
| chr8_2 | exon | 26873896 | 26874065 | 26873896 | ID=Msa1242560-mRNA-1:exon:9425;Parent=Msa1242560-mRNA-1 |
| chr8_2 | CDS | 26870128 | 26870193 | 26870128 | ID=Msa1242560-mRNA-1:cds;Parent=Msa1242560-mRNA-1 |
| chr8_2 | CDS | 26870291 | 26870347 | 26870291 | ID=Msa1242560-mRNA-1:cds;Parent=Msa1242560-mRNA-1 |
| chr8_2 | CDS | 26870660 | 26870809 | 26870660 | ID=Msa1242560-mRNA-1:cds;Parent=Msa1242560-mRNA-1 |
| chr8_2 | CDS | 26871440 | 26871524 | 26871440 | ID=Msa1242560-mRNA-1:cds;Parent=Msa1242560-mRNA-1 |
| chr8_2 | CDS | 26872454 | 26872544 | 26872454 | ID=Msa1242560-mRNA-1:cds;Parent=Msa1242560-mRNA-1 |
| chr8_2 | CDS | 26872727 | 26872876 | 26872727 | ID=Msa1242560-mRNA-1:cds;Parent=Msa1242560-mRNA-1 |
| chr8_2 | CDS | 26873033 | 26873149 | 26873033 | ID=Msa1242560-mRNA-1:cds;Parent=Msa1242560-mRNA-1 |
| chr8_2 | CDS | 26873449 | 26873521 | 26873449 | ID=Msa1242560-mRNA-1:cds;Parent=Msa1242560-mRNA-1 |
| chr8_2 | CDS | 26873634 | 26873775 | 26873634 | ID=Msa1242560-mRNA-1:cds;Parent=Msa1242560-mRNA-1 |
| chr8_2 | CDS | 26873896 | 26874065 | 26873896 | ID=Msa1242560-mRNA-1:cds;Parent=Msa1242560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
