AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1243270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1243270 MtrunA17_Chr2g0287651 51.934 181 79 3 34 207 46 225 4.70e-56 191
Msa1243270 MtrunA17_Chr1g0203051 29.268 205 121 4 10 207 42 229 2.20e-29 115
Msa1243270 MtrunA17_Chr1g0171741 30.964 197 103 6 12 187 78 262 7.39e-22 90.9
Msa1243270 MtrunA17_Chr5g0448761 33.803 142 89 2 70 206 70 211 2.00e-16 78.2
Msa1243270 MtrunA17_Chr2g0276841 34.286 140 84 3 72 204 82 220 3.05e-16 77.4
Msa1243270 MtrunA17_Chr1g0203721 33.728 169 103 5 46 209 51 215 8.38e-15 73.6
Msa1243270 MtrunA17_Chr6g0458391 40.141 142 71 6 54 184 214 352 4.01e-14 71.2
Msa1243270 MtrunA17_Chr6g0458391 30.769 130 81 3 65 188 93 219 1.78e-12 66.6
Msa1243270 MtrunA17_Chr2g0329361 31.677 161 93 7 11 160 10 164 5.67e-14 69.3
Msa1243270 MtrunA17_Chr3g0082121 31.818 154 90 4 65 208 45 193 3.87e-13 68.6
Msa1243270 MtrunA17_Chr8g0389811 28.758 153 85 5 36 168 47 195 5.39e-13 65.9
Msa1243270 MtrunA17_Chr8g0363841 30.070 143 93 3 70 208 27 166 8.12e-13 67.4
Msa1243270 MtrunA17_Chr1g0202341 30.128 156 103 3 69 221 60 212 1.11e-12 67.0
Msa1243270 MtrunA17_Chr2g0329421 36.082 97 56 2 71 164 38 131 1.93e-12 64.3
Msa1243270 MtrunA17_Chr1g0198761 30.519 154 93 4 70 211 57 208 2.31e-12 66.2
Msa1243270 MtrunA17_Chr5g0431001 28.986 138 85 4 72 197 73 209 5.78e-12 64.7
Msa1243270 MtrunA17_Chr4g0033611 33.333 120 73 3 72 187 88 204 3.02e-11 61.6
Msa1243270 MtrunA17_Chr2g0290391 28.472 144 91 4 70 205 61 200 5.71e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1243270 AT1G10240.2 34.483 145 87 3 67 204 55 198 8.45e-18 82.4
Msa1243270 AT1G10240.1 34.483 145 87 3 67 204 55 198 8.45e-18 82.4
Msa1243270 AT4G38180.1 29.817 218 126 6 14 206 8 223 1.74e-16 78.6
Msa1243270 AT3G59470.2 30.247 162 103 4 10 164 28 186 5.92e-12 64.3
Msa1243270 AT3G59470.3 30.247 162 103 4 10 164 16 174 6.16e-12 63.9
Msa1243270 AT3G59470.1 30.247 162 103 4 10 164 16 174 6.16e-12 63.9
Msa1243270 AT5G28530.3 26.761 142 96 3 70 205 65 204 4.65e-11 62.8
Msa1243270 AT5G28530.2 26.761 142 96 3 70 205 65 204 4.65e-11 62.8
Msa1243270 AT5G28530.1 26.761 142 96 3 70 205 65 204 4.65e-11 62.8
Msa1243270 AT5G28530.4 27.465 142 95 3 70 205 65 204 6.69e-11 62.0
Msa1243270 AT5G28530.5 27.465 142 95 3 70 205 65 204 7.32e-11 62.0

Find 46 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTGATTACAATGAGAATT+TGG 0.226630 8_2:+28813779 Msa1243270:CDS
GATATTATGAATCTTGATTT+TGG 0.243439 8_2:+28813855 Msa1243270:CDS
TATCAAAACATGTCATATAA+TGG 0.255086 8_2:+28814259 Msa1243270:CDS
TACATTTATTTCCTGCATAT+CGG 0.267468 8_2:+28814186 Msa1243270:CDS
TTTGATGAGGATGGAGATAA+TGG 0.283559 8_2:+28813699 Msa1243270:CDS
AAAGCACCGGTTTCGTTGTT+AGG 0.291848 8_2:+28813919 Msa1243270:CDS
ATCAAAACATGTCATATAAT+GGG 0.301079 8_2:+28814260 Msa1243270:CDS
ACATTTATTTCCTGCATATC+GGG 0.352320 8_2:+28814187 Msa1243270:CDS
GGCGAGCTGGACAATTATTC+CGG 0.353940 8_2:-28814073 None:intergenic
TTGGATTCTTGTGTAATAGA+TGG 0.384545 8_2:+28813798 Msa1243270:CDS
TCTGATCCGGTGTTGATAAC+TGG 0.398541 8_2:+28815178 Msa1243270:CDS
AACACTTGACTAGGGTCAAT+AGG 0.418818 8_2:+28814027 Msa1243270:CDS
ATCTTTCCTAACAACGAAAC+CGG 0.440915 8_2:-28813925 None:intergenic
AAAGTGTACCGCAGCAAAGT+TGG 0.448110 8_2:+28813948 Msa1243270:CDS
GGGGTACATGGTGGCAAACA+AGG 0.461825 8_2:+28814280 Msa1243270:CDS
AAGTGTACCGCAGCAAAGTT+GGG 0.465894 8_2:+28813949 Msa1243270:CDS
TCCGGTGTTGATAACTGGTC+TGG 0.467260 8_2:+28815183 Msa1243270:CDS
GCGAGCTGGACAATTATTCC+GGG 0.478461 8_2:-28814072 None:intergenic
TCCTGCATATCGGGGATTGA+CGG 0.482534 8_2:+28814196 Msa1243270:CDS
TCCGTCAATCCCCGATATGC+AGG 0.483985 8_2:-28814197 None:intergenic
TAAGAGTAATACCTCTGATC+CGG 0.486946 8_2:+28815165 Msa1243270:intron
TCTAGAGACCACGATGTCTC+TGG 0.494750 8_2:+28813759 Msa1243270:CDS
TTGATGAGGATGGAGATAAT+GGG 0.498718 8_2:+28813700 Msa1243270:CDS
TAACGTATACGAAGGCGAGC+TGG 0.516616 8_2:-28814086 None:intergenic
CTGGACAATTATTCCGGGTG+AGG 0.532213 8_2:-28814067 None:intergenic
ATTCTTGTGTAATAGATGGT+AGG 0.533148 8_2:+28813802 Msa1243270:CDS
CATAATATCATCCGCCGTCA+TGG 0.536322 8_2:-28813841 None:intergenic
ATGTCATATAATGGGGTACA+TGG 0.556484 8_2:+28814268 Msa1243270:CDS
TGGACAATTATTCCGGGTGA+GGG 0.565731 8_2:-28814066 None:intergenic
GAGAACATAGACCCCTCACC+CGG 0.567472 8_2:+28814054 Msa1243270:CDS
CATTTATTTCCTGCATATCG+GGG 0.582815 8_2:+28814188 Msa1243270:CDS
GGGTACATGGTGGCAAACAA+GGG 0.589509 8_2:+28814281 Msa1243270:CDS
TGTTAAGATTAATACCATGA+CGG 0.594275 8_2:+28813827 Msa1243270:CDS
GTTGACAGTATGCAATCGTA+CGG 0.607441 8_2:+28814236 Msa1243270:CDS
TACATGGTGGCAAACAAGGG+TGG 0.611316 8_2:+28814284 Msa1243270:CDS
AGTTATCAACACCGGATCAG+AGG 0.615238 8_2:-28815176 None:intergenic
CTGGATTATAACGTATACGA+AGG 0.628678 8_2:-28814094 None:intergenic
TCCAGACCAGTTATCAACAC+CGG 0.632781 8_2:-28815184 None:intergenic
ATAATCCAGAAAGCTTGAGA+TGG 0.638128 8_2:+28814108 Msa1243270:intron
AGAAAGCTTGAGATGGAGAG+TGG 0.639417 8_2:+28814115 Msa1243270:intron
GGACAATTATTCCGGGTGAG+GGG 0.643647 8_2:-28814065 None:intergenic
TCAAAACATGTCATATAATG+GGG 0.649125 8_2:+28814261 Msa1243270:CDS
TCATATAATGGGGTACATGG+TGG 0.662255 8_2:+28814271 Msa1243270:CDS
TTTGTTTCCCAACTTTGCTG+CGG 0.666357 8_2:-28813956 None:intergenic
TGTAATCACCAGAGACATCG+TGG 0.695321 8_2:-28813767 None:intergenic
TAAGATTAATACCATGACGG+CGG 0.698475 8_2:+28813830 Msa1243270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAATGTATATATTTTGAT+GGG - chr8_2:28814175-28814194 None:intergenic 10.0%
!!! AATAAATGTATATATTTTGA+TGG - chr8_2:28814176-28814195 None:intergenic 10.0%
!!! ATAAATGTATATATTTTGAT+GGG - chr8_2:28814175-28814194 None:intergenic 10.0%
!!! AATAAATGTATATATTTTGA+TGG - chr8_2:28814176-28814195 None:intergenic 10.0%
!!! TAAATGTATATATTTTGATG+GGG - chr8_2:28814174-28814193 None:intergenic 15.0%
!!! AAAGATTTGTATAACTATTT+TGG + chr8_2:28814332-28814351 Msa1243270:intron 15.0%
!!! TCATATTTTACATATAACAT+AGG - chr8_2:28814437-28814456 None:intergenic 15.0%
!! TTATATGTAAAATATGAGAA+GGG + chr8_2:28814440-28814459 Msa1243270:intron 15.0%
!!! AAAATTGAAAAGATTGTTTT+GGG + chr8_2:28814472-28814491 Msa1243270:intron 15.0%
!!! TAAATGTATATATTTTGATG+GGG - chr8_2:28814174-28814193 None:intergenic 15.0%
!!! AAAGATTTGTATAACTATTT+TGG + chr8_2:28814332-28814351 Msa1243270:intron 15.0%
!!! TCATATTTTACATATAACAT+AGG - chr8_2:28814437-28814456 None:intergenic 15.0%
!! TTATATGTAAAATATGAGAA+GGG + chr8_2:28814440-28814459 Msa1243270:intron 15.0%
!!! AAAATTGAAAAGATTGTTTT+GGG + chr8_2:28814472-28814491 Msa1243270:intron 15.0%
!!! TTCTGATTTTAATTTTGATG+AGG + chr8_2:28813686-28813705 Msa1243270:CDS 20.0%
!!! GATATTATGAATCTTGATTT+TGG + chr8_2:28813855-28813874 Msa1243270:CDS 20.0%
!!! TTTTGCATACTTTTGATAAA+AGG - chr8_2:28813901-28813920 None:intergenic 20.0%
!! TATCAAAACATGTCATATAA+TGG + chr8_2:28814259-28814278 Msa1243270:CDS 20.0%
!! ATCAAAACATGTCATATAAT+GGG + chr8_2:28814260-28814279 Msa1243270:CDS 20.0%
!! GTTATATGTAAAATATGAGA+AGG + chr8_2:28814439-28814458 Msa1243270:intron 20.0%
!!! GAAAATTGAAAAGATTGTTT+TGG + chr8_2:28814471-28814490 Msa1243270:intron 20.0%
!!! GTATTTATTTTTCTTGTATG+TGG - chr8_2:28814555-28814574 None:intergenic 20.0%
!! AAATAAATACAATCTTCCTT+TGG + chr8_2:28814565-28814584 Msa1243270:intron 20.0%
!!! ATTCACAAACGATTATTTTT+GGG + chr8_2:28814612-28814631 Msa1243270:intron 20.0%
!!! TTCTGATTTTAATTTTGATG+AGG + chr8_2:28813686-28813705 Msa1243270:CDS 20.0%
!!! GATATTATGAATCTTGATTT+TGG + chr8_2:28813855-28813874 Msa1243270:CDS 20.0%
!!! TTTTGCATACTTTTGATAAA+AGG - chr8_2:28813901-28813920 None:intergenic 20.0%
!! TATCAAAACATGTCATATAA+TGG + chr8_2:28814259-28814278 Msa1243270:CDS 20.0%
!! ATCAAAACATGTCATATAAT+GGG + chr8_2:28814260-28814279 Msa1243270:CDS 20.0%
!! GTTATATGTAAAATATGAGA+AGG + chr8_2:28814439-28814458 Msa1243270:intron 20.0%
!!! GAAAATTGAAAAGATTGTTT+TGG + chr8_2:28814471-28814490 Msa1243270:intron 20.0%
!!! GTATTTATTTTTCTTGTATG+TGG - chr8_2:28814555-28814574 None:intergenic 20.0%
!! AAATAAATACAATCTTCCTT+TGG + chr8_2:28814565-28814584 Msa1243270:intron 20.0%
!!! ATTCACAAACGATTATTTTT+GGG + chr8_2:28814612-28814631 Msa1243270:intron 20.0%
!!! GATTTTAATTTTGATGAGGA+TGG + chr8_2:28813690-28813709 Msa1243270:CDS 25.0%
! TGTTAAGATTAATACCATGA+CGG + chr8_2:28813827-28813846 Msa1243270:CDS 25.0%
! TACATTTATTTCCTGCATAT+CGG + chr8_2:28814186-28814205 Msa1243270:CDS 25.0%
! TCAAAACATGTCATATAATG+GGG + chr8_2:28814261-28814280 Msa1243270:CDS 25.0%
!!! TAACTATTTTGGCAAGAAAA+TGG + chr8_2:28814343-28814362 Msa1243270:intron 25.0%
!!! AACTATTTTGGCAAGAAAAT+GGG + chr8_2:28814344-28814363 Msa1243270:intron 25.0%
!!! ATGGGTATTGATATTAAAGA+TGG + chr8_2:28814362-28814381 Msa1243270:intron 25.0%
!! CAATCTTTTCAATTTTCCAT+TGG - chr8_2:28814468-28814487 None:intergenic 25.0%
!!! CGAAATGATTTTTTGTGTTA+TGG + chr8_2:28814509-28814528 Msa1243270:intron 25.0%
! CAAAAATAATCGTTTGTGAA+TGG - chr8_2:28814613-28814632 None:intergenic 25.0%
!! CATTCACAAACGATTATTTT+TGG + chr8_2:28814611-28814630 Msa1243270:intron 25.0%
!!! TTCACAAACGATTATTTTTG+GGG + chr8_2:28814613-28814632 Msa1243270:intron 25.0%
! AAACAATAGAGACATATACA+TGG + chr8_2:28814654-28814673 Msa1243270:intron 25.0%
! AACAATAGAGACATATACAT+GGG + chr8_2:28814655-28814674 Msa1243270:intron 25.0%
!! AATTCATTTCTAGAAGCAAT+GGG + chr8_2:28814683-28814702 Msa1243270:intron 25.0%
! ATACGAGAACAAGAAATTAT+GGG + chr8_2:28814967-28814986 Msa1243270:intron 25.0%
!!! TACTTTCGAGATAAGTTTTT+TGG + chr8_2:28814998-28815017 Msa1243270:intron 25.0%
!!! GATTTTAATTTTGATGAGGA+TGG + chr8_2:28813690-28813709 Msa1243270:CDS 25.0%
! TGTTAAGATTAATACCATGA+CGG + chr8_2:28813827-28813846 Msa1243270:CDS 25.0%
! TACATTTATTTCCTGCATAT+CGG + chr8_2:28814186-28814205 Msa1243270:CDS 25.0%
! TCAAAACATGTCATATAATG+GGG + chr8_2:28814261-28814280 Msa1243270:CDS 25.0%
!!! TAACTATTTTGGCAAGAAAA+TGG + chr8_2:28814343-28814362 Msa1243270:intron 25.0%
!!! AACTATTTTGGCAAGAAAAT+GGG + chr8_2:28814344-28814363 Msa1243270:intron 25.0%
!!! ATGGGTATTGATATTAAAGA+TGG + chr8_2:28814362-28814381 Msa1243270:intron 25.0%
!! CAATCTTTTCAATTTTCCAT+TGG - chr8_2:28814468-28814487 None:intergenic 25.0%
!!! CGAAATGATTTTTTGTGTTA+TGG + chr8_2:28814509-28814528 Msa1243270:intron 25.0%
! CAAAAATAATCGTTTGTGAA+TGG - chr8_2:28814613-28814632 None:intergenic 25.0%
!! CATTCACAAACGATTATTTT+TGG + chr8_2:28814611-28814630 Msa1243270:intron 25.0%
!!! TTCACAAACGATTATTTTTG+GGG + chr8_2:28814613-28814632 Msa1243270:intron 25.0%
! AAACAATAGAGACATATACA+TGG + chr8_2:28814654-28814673 Msa1243270:intron 25.0%
! AACAATAGAGACATATACAT+GGG + chr8_2:28814655-28814674 Msa1243270:intron 25.0%
!! AATTCATTTCTAGAAGCAAT+GGG + chr8_2:28814683-28814702 Msa1243270:intron 25.0%
! ATACGAGAACAAGAAATTAT+GGG + chr8_2:28814967-28814986 Msa1243270:intron 25.0%
!!! TACTTTCGAGATAAGTTTTT+TGG + chr8_2:28814998-28815017 Msa1243270:intron 25.0%
TGGTGATTACAATGAGAATT+TGG + chr8_2:28813779-28813798 Msa1243270:CDS 30.0%
TTGGATTCTTGTGTAATAGA+TGG + chr8_2:28813798-28813817 Msa1243270:CDS 30.0%
ATTCTTGTGTAATAGATGGT+AGG + chr8_2:28813802-28813821 Msa1243270:CDS 30.0%
CAGTTTGTGTGCAATAAAAA+TGG + chr8_2:28813990-28814009 Msa1243270:CDS 30.0%
AAGCAAAAAACACTTGACTA+GGG + chr8_2:28814019-28814038 Msa1243270:CDS 30.0%
ACATTTATTTCCTGCATATC+GGG + chr8_2:28814187-28814206 Msa1243270:CDS 30.0%
! GAATTCATTTCTAGAAGCAA+TGG + chr8_2:28814682-28814701 Msa1243270:intron 30.0%
TTTCAAGAAAGCAATGTACT+CGG + chr8_2:28814859-28814878 Msa1243270:intron 30.0%
AAAACTCTTCAAATTCCTCT+GGG - chr8_2:28814892-28814911 None:intergenic 30.0%
! AGAGGAATTTGAAGAGTTTT+GGG + chr8_2:28814892-28814911 Msa1243270:intron 30.0%
! TTTCTTGTTCTCGTATGTTT+TGG - chr8_2:28814963-28814982 None:intergenic 30.0%
CATACGAGAACAAGAAATTA+TGG + chr8_2:28814966-28814985 Msa1243270:intron 30.0%
! AAACTTATCTCGAAAGTATG+CGG - chr8_2:28814996-28815015 None:intergenic 30.0%
!!! ATAAGTTTTTTGGTCGCATA+CGG + chr8_2:28815008-28815027 Msa1243270:intron 30.0%
TGGTGATTACAATGAGAATT+TGG + chr8_2:28813779-28813798 Msa1243270:CDS 30.0%
TTGGATTCTTGTGTAATAGA+TGG + chr8_2:28813798-28813817 Msa1243270:CDS 30.0%
ATTCTTGTGTAATAGATGGT+AGG + chr8_2:28813802-28813821 Msa1243270:CDS 30.0%
CAGTTTGTGTGCAATAAAAA+TGG + chr8_2:28813990-28814009 Msa1243270:CDS 30.0%
AAGCAAAAAACACTTGACTA+GGG + chr8_2:28814019-28814038 Msa1243270:CDS 30.0%
ACATTTATTTCCTGCATATC+GGG + chr8_2:28814187-28814206 Msa1243270:CDS 30.0%
! GAATTCATTTCTAGAAGCAA+TGG + chr8_2:28814682-28814701 Msa1243270:intron 30.0%
TTTCAAGAAAGCAATGTACT+CGG + chr8_2:28814859-28814878 Msa1243270:intron 30.0%
AAAACTCTTCAAATTCCTCT+GGG - chr8_2:28814892-28814911 None:intergenic 30.0%
! AGAGGAATTTGAAGAGTTTT+GGG + chr8_2:28814892-28814911 Msa1243270:intron 30.0%
! TTTCTTGTTCTCGTATGTTT+TGG - chr8_2:28814963-28814982 None:intergenic 30.0%
CATACGAGAACAAGAAATTA+TGG + chr8_2:28814966-28814985 Msa1243270:intron 30.0%
! AAACTTATCTCGAAAGTATG+CGG - chr8_2:28814996-28815015 None:intergenic 30.0%
!!! ATAAGTTTTTTGGTCGCATA+CGG + chr8_2:28815008-28815027 Msa1243270:intron 30.0%
TTTGATGAGGATGGAGATAA+TGG + chr8_2:28813699-28813718 Msa1243270:CDS 35.0%
TTGATGAGGATGGAGATAAT+GGG + chr8_2:28813700-28813719 Msa1243270:CDS 35.0%
TAAGATTAATACCATGACGG+CGG + chr8_2:28813830-28813849 Msa1243270:CDS 35.0%
! CAAAAGTATGCAAAAAGCAC+CGG + chr8_2:28813906-28813925 Msa1243270:CDS 35.0%
ATCTTTCCTAACAACGAAAC+CGG - chr8_2:28813928-28813947 None:intergenic 35.0%
GAAGCAAAAAACACTTGACT+AGG + chr8_2:28814018-28814037 Msa1243270:CDS 35.0%
CTGGATTATAACGTATACGA+AGG - chr8_2:28814097-28814116 None:intergenic 35.0%
ATAATCCAGAAAGCTTGAGA+TGG + chr8_2:28814108-28814127 Msa1243270:intron 35.0%
! TGGAGAGTGGTAATTTTTGA+AGG + chr8_2:28814128-28814147 Msa1243270:CDS 35.0%
! GGAGAGTGGTAATTTTTGAA+GGG + chr8_2:28814129-28814148 Msa1243270:CDS 35.0%
!!! ATTTTGATGGGGTTAGTTCA+TGG - chr8_2:28814163-28814182 None:intergenic 35.0%
CATTTATTTCCTGCATATCG+GGG + chr8_2:28814188-28814207 Msa1243270:CDS 35.0%
! ATGTCATATAATGGGGTACA+TGG + chr8_2:28814268-28814287 Msa1243270:CDS 35.0%
TTGCTTCTCTAAGCTATCTT+CGG + chr8_2:28814393-28814412 Msa1243270:intron 35.0%
!! AAATATGAGAAGGGTACCAA+TGG + chr8_2:28814449-28814468 Msa1243270:intron 35.0%
!!! AAAAGATTGTTTTGGGCAGA+TGG + chr8_2:28814479-28814498 Msa1243270:intron 35.0%
! CTTCCTTTGGTAATATTCTC+TGG + chr8_2:28814578-28814597 Msa1243270:intron 35.0%
AAACTCTTCAAATTCCTCTG+GGG - chr8_2:28814891-28814910 None:intergenic 35.0%
CAAAACTCTTCAAATTCCTC+TGG - chr8_2:28814893-28814912 None:intergenic 35.0%
! CAGAGGAATTTGAAGAGTTT+TGG + chr8_2:28814891-28814910 Msa1243270:intron 35.0%
TGAGCTACAAGGTAACAATT+GGG + chr8_2:28814934-28814953 Msa1243270:intron 35.0%
TTCTATACTCTCTCAATGTG+TGG - chr8_2:28815123-28815142 None:intergenic 35.0%
TAAGAGTAATACCTCTGATC+CGG + chr8_2:28815165-28815184 Msa1243270:intron 35.0%
TTTGATGAGGATGGAGATAA+TGG + chr8_2:28813699-28813718 Msa1243270:CDS 35.0%
TTGATGAGGATGGAGATAAT+GGG + chr8_2:28813700-28813719 Msa1243270:CDS 35.0%
TAAGATTAATACCATGACGG+CGG + chr8_2:28813830-28813849 Msa1243270:CDS 35.0%
! CAAAAGTATGCAAAAAGCAC+CGG + chr8_2:28813906-28813925 Msa1243270:CDS 35.0%
ATCTTTCCTAACAACGAAAC+CGG - chr8_2:28813928-28813947 None:intergenic 35.0%
GAAGCAAAAAACACTTGACT+AGG + chr8_2:28814018-28814037 Msa1243270:CDS 35.0%
CTGGATTATAACGTATACGA+AGG - chr8_2:28814097-28814116 None:intergenic 35.0%
ATAATCCAGAAAGCTTGAGA+TGG + chr8_2:28814108-28814127 Msa1243270:intron 35.0%
! TGGAGAGTGGTAATTTTTGA+AGG + chr8_2:28814128-28814147 Msa1243270:CDS 35.0%
! GGAGAGTGGTAATTTTTGAA+GGG + chr8_2:28814129-28814148 Msa1243270:CDS 35.0%
!!! ATTTTGATGGGGTTAGTTCA+TGG - chr8_2:28814163-28814182 None:intergenic 35.0%
CATTTATTTCCTGCATATCG+GGG + chr8_2:28814188-28814207 Msa1243270:CDS 35.0%
! ATGTCATATAATGGGGTACA+TGG + chr8_2:28814268-28814287 Msa1243270:CDS 35.0%
TTGCTTCTCTAAGCTATCTT+CGG + chr8_2:28814393-28814412 Msa1243270:intron 35.0%
!! AAATATGAGAAGGGTACCAA+TGG + chr8_2:28814449-28814468 Msa1243270:intron 35.0%
!!! AAAAGATTGTTTTGGGCAGA+TGG + chr8_2:28814479-28814498 Msa1243270:intron 35.0%
! CTTCCTTTGGTAATATTCTC+TGG + chr8_2:28814578-28814597 Msa1243270:intron 35.0%
AAACTCTTCAAATTCCTCTG+GGG - chr8_2:28814891-28814910 None:intergenic 35.0%
CAAAACTCTTCAAATTCCTC+TGG - chr8_2:28814893-28814912 None:intergenic 35.0%
! CAGAGGAATTTGAAGAGTTT+TGG + chr8_2:28814891-28814910 Msa1243270:intron 35.0%
TGAGCTACAAGGTAACAATT+GGG + chr8_2:28814934-28814953 Msa1243270:intron 35.0%
TTCTATACTCTCTCAATGTG+TGG - chr8_2:28815123-28815142 None:intergenic 35.0%
TAAGAGTAATACCTCTGATC+CGG + chr8_2:28815165-28815184 Msa1243270:intron 35.0%
TTTGTTTCCCAACTTTGCTG+CGG - chr8_2:28813959-28813978 None:intergenic 40.0%
AACACTTGACTAGGGTCAAT+AGG + chr8_2:28814027-28814046 Msa1243270:CDS 40.0%
GTTGACAGTATGCAATCGTA+CGG + chr8_2:28814236-28814255 Msa1243270:CDS 40.0%
! TCATATAATGGGGTACATGG+TGG + chr8_2:28814271-28814290 Msa1243270:CDS 40.0%
TGCTTCTCTAAGCTATCTTC+GGG + chr8_2:28814394-28814413 Msa1243270:intron 40.0%
CAGCCAGAGAATATTACCAA+AGG - chr8_2:28814584-28814603 None:intergenic 40.0%
!!! GATTATTTTTGGGGCTGCTT+TGG + chr8_2:28814622-28814641 Msa1243270:intron 40.0%
ACAACCAAAAGCAGTAGTGA+CGG + chr8_2:28814712-28814731 Msa1243270:intron 40.0%
ACACAGTCTGTGAAATGCTT+CGG - chr8_2:28814780-28814799 None:intergenic 40.0%
GTGAGCTACAAGGTAACAAT+TGG + chr8_2:28814933-28814952 Msa1243270:intron 40.0%
ATTGATTGCTTCACACTGAG+AGG - chr8_2:28815038-28815057 None:intergenic 40.0%
ATGTGTGGTCAAAGTTATGC+AGG - chr8_2:28815108-28815127 None:intergenic 40.0%
TTTGTTTCCCAACTTTGCTG+CGG - chr8_2:28813959-28813978 None:intergenic 40.0%
AACACTTGACTAGGGTCAAT+AGG + chr8_2:28814027-28814046 Msa1243270:CDS 40.0%
GTTGACAGTATGCAATCGTA+CGG + chr8_2:28814236-28814255 Msa1243270:CDS 40.0%
! TCATATAATGGGGTACATGG+TGG + chr8_2:28814271-28814290 Msa1243270:CDS 40.0%
TGCTTCTCTAAGCTATCTTC+GGG + chr8_2:28814394-28814413 Msa1243270:intron 40.0%
CAGCCAGAGAATATTACCAA+AGG - chr8_2:28814584-28814603 None:intergenic 40.0%
!!! GATTATTTTTGGGGCTGCTT+TGG + chr8_2:28814622-28814641 Msa1243270:intron 40.0%
ACAACCAAAAGCAGTAGTGA+CGG + chr8_2:28814712-28814731 Msa1243270:intron 40.0%
ACACAGTCTGTGAAATGCTT+CGG - chr8_2:28814780-28814799 None:intergenic 40.0%
GTGAGCTACAAGGTAACAAT+TGG + chr8_2:28814933-28814952 Msa1243270:intron 40.0%
ATTGATTGCTTCACACTGAG+AGG - chr8_2:28815038-28815057 None:intergenic 40.0%
ATGTGTGGTCAAAGTTATGC+AGG - chr8_2:28815108-28815127 None:intergenic 40.0%
TGTAATCACCAGAGACATCG+TGG - chr8_2:28813770-28813789 None:intergenic 45.0%
CATAATATCATCCGCCGTCA+TGG - chr8_2:28813844-28813863 None:intergenic 45.0%
!! AAAGCACCGGTTTCGTTGTT+AGG + chr8_2:28813919-28813938 Msa1243270:CDS 45.0%
AAAGTGTACCGCAGCAAAGT+TGG + chr8_2:28813948-28813967 Msa1243270:CDS 45.0%
AAGTGTACCGCAGCAAAGTT+GGG + chr8_2:28813949-28813968 Msa1243270:CDS 45.0%
TGGACAATTATTCCGGGTGA+GGG - chr8_2:28814069-28814088 None:intergenic 45.0%
ACTCTCCATCTCAAGCTTTC+TGG - chr8_2:28814116-28814135 None:intergenic 45.0%
AGAAAGCTTGAGATGGAGAG+TGG + chr8_2:28814115-28814134 Msa1243270:intron 45.0%
AAGGGTGGATATGATGCTGT+TGG + chr8_2:28814299-28814318 Msa1243270:intron 45.0%
GCTTCTCTAAGCTATCTTCG+GGG + chr8_2:28814395-28814414 Msa1243270:intron 45.0%
CTTCTCTAAGCTATCTTCGG+GGG + chr8_2:28814396-28814415 Msa1243270:intron 45.0%
!!! GATTGTTTTGGGCAGATGGA+TGG + chr8_2:28814483-28814502 Msa1243270:intron 45.0%
GGATGGTGACATGTCTATGA+GGG + chr8_2:28814733-28814752 Msa1243270:intron 45.0%
CACAGTCTGTGAAATGCTTC+GGG - chr8_2:28814779-28814798 None:intergenic 45.0%
AGCATTCTTGTGCAAATGCC+AGG - chr8_2:28814804-28814823 None:intergenic 45.0%
GTTGAGATGAGTGAGCTACA+AGG + chr8_2:28814923-28814942 Msa1243270:intron 45.0%
AGTTATCAACACCGGATCAG+AGG - chr8_2:28815179-28815198 None:intergenic 45.0%
!! TCTGATCCGGTGTTGATAAC+TGG + chr8_2:28815178-28815197 Msa1243270:CDS 45.0%
TCCAGACCAGTTATCAACAC+CGG - chr8_2:28815187-28815206 None:intergenic 45.0%
TGTAATCACCAGAGACATCG+TGG - chr8_2:28813770-28813789 None:intergenic 45.0%
CATAATATCATCCGCCGTCA+TGG - chr8_2:28813844-28813863 None:intergenic 45.0%
!! AAAGCACCGGTTTCGTTGTT+AGG + chr8_2:28813919-28813938 Msa1243270:CDS 45.0%
AAAGTGTACCGCAGCAAAGT+TGG + chr8_2:28813948-28813967 Msa1243270:CDS 45.0%
AAGTGTACCGCAGCAAAGTT+GGG + chr8_2:28813949-28813968 Msa1243270:CDS 45.0%
TGGACAATTATTCCGGGTGA+GGG - chr8_2:28814069-28814088 None:intergenic 45.0%
ACTCTCCATCTCAAGCTTTC+TGG - chr8_2:28814116-28814135 None:intergenic 45.0%
AGAAAGCTTGAGATGGAGAG+TGG + chr8_2:28814115-28814134 Msa1243270:intron 45.0%
AAGGGTGGATATGATGCTGT+TGG + chr8_2:28814299-28814318 Msa1243270:intron 45.0%
GCTTCTCTAAGCTATCTTCG+GGG + chr8_2:28814395-28814414 Msa1243270:intron 45.0%
CTTCTCTAAGCTATCTTCGG+GGG + chr8_2:28814396-28814415 Msa1243270:intron 45.0%
!!! GATTGTTTTGGGCAGATGGA+TGG + chr8_2:28814483-28814502 Msa1243270:intron 45.0%
GGATGGTGACATGTCTATGA+GGG + chr8_2:28814733-28814752 Msa1243270:intron 45.0%
CACAGTCTGTGAAATGCTTC+GGG - chr8_2:28814779-28814798 None:intergenic 45.0%
AGCATTCTTGTGCAAATGCC+AGG - chr8_2:28814804-28814823 None:intergenic 45.0%
GTTGAGATGAGTGAGCTACA+AGG + chr8_2:28814923-28814942 Msa1243270:intron 45.0%
AGTTATCAACACCGGATCAG+AGG - chr8_2:28815179-28815198 None:intergenic 45.0%
!! TCTGATCCGGTGTTGATAAC+TGG + chr8_2:28815178-28815197 Msa1243270:CDS 45.0%
TCCAGACCAGTTATCAACAC+CGG - chr8_2:28815187-28815206 None:intergenic 45.0%
TCTAGAGACCACGATGTCTC+TGG + chr8_2:28813759-28813778 Msa1243270:CDS 50.0%
GGACAATTATTCCGGGTGAG+GGG - chr8_2:28814068-28814087 None:intergenic 50.0%
CTGGACAATTATTCCGGGTG+AGG - chr8_2:28814070-28814089 None:intergenic 50.0%
GCGAGCTGGACAATTATTCC+GGG - chr8_2:28814075-28814094 None:intergenic 50.0%
GGCGAGCTGGACAATTATTC+CGG - chr8_2:28814076-28814095 None:intergenic 50.0%
TAACGTATACGAAGGCGAGC+TGG - chr8_2:28814089-28814108 None:intergenic 50.0%
TCCTGCATATCGGGGATTGA+CGG + chr8_2:28814196-28814215 Msa1243270:CDS 50.0%
GGGTACATGGTGGCAAACAA+GGG + chr8_2:28814281-28814300 Msa1243270:CDS 50.0%
TACATGGTGGCAAACAAGGG+TGG + chr8_2:28814284-28814303 Msa1243270:CDS 50.0%
TCTAAGCTATCTTCGGGGGA+AGG + chr8_2:28814400-28814419 Msa1243270:intron 50.0%
! CCATCCGTCACTACTGCTTT+TGG - chr8_2:28814719-28814738 None:intergenic 50.0%
! CCAAAAGCAGTAGTGACGGA+TGG + chr8_2:28814716-28814735 Msa1243270:intron 50.0%
CGGATGGTGACATGTCTATG+AGG + chr8_2:28814732-28814751 Msa1243270:intron 50.0%
CATTTCACAGACTGTGTGCC+TGG + chr8_2:28814783-28814802 Msa1243270:intron 50.0%
!! TCCGGTGTTGATAACTGGTC+TGG + chr8_2:28815183-28815202 Msa1243270:CDS 50.0%
TCTAGAGACCACGATGTCTC+TGG + chr8_2:28813759-28813778 Msa1243270:CDS 50.0%
GGACAATTATTCCGGGTGAG+GGG - chr8_2:28814068-28814087 None:intergenic 50.0%
CTGGACAATTATTCCGGGTG+AGG - chr8_2:28814070-28814089 None:intergenic 50.0%
GCGAGCTGGACAATTATTCC+GGG - chr8_2:28814075-28814094 None:intergenic 50.0%
GGCGAGCTGGACAATTATTC+CGG - chr8_2:28814076-28814095 None:intergenic 50.0%
TAACGTATACGAAGGCGAGC+TGG - chr8_2:28814089-28814108 None:intergenic 50.0%
TCCTGCATATCGGGGATTGA+CGG + chr8_2:28814196-28814215 Msa1243270:CDS 50.0%
GGGTACATGGTGGCAAACAA+GGG + chr8_2:28814281-28814300 Msa1243270:CDS 50.0%
TACATGGTGGCAAACAAGGG+TGG + chr8_2:28814284-28814303 Msa1243270:CDS 50.0%
TCTAAGCTATCTTCGGGGGA+AGG + chr8_2:28814400-28814419 Msa1243270:intron 50.0%
! CCATCCGTCACTACTGCTTT+TGG - chr8_2:28814719-28814738 None:intergenic 50.0%
! CCAAAAGCAGTAGTGACGGA+TGG + chr8_2:28814716-28814735 Msa1243270:intron 50.0%
CGGATGGTGACATGTCTATG+AGG + chr8_2:28814732-28814751 Msa1243270:intron 50.0%
CATTTCACAGACTGTGTGCC+TGG + chr8_2:28814783-28814802 Msa1243270:intron 50.0%
!! TCCGGTGTTGATAACTGGTC+TGG + chr8_2:28815183-28815202 Msa1243270:CDS 50.0%
GAGAACATAGACCCCTCACC+CGG + chr8_2:28814054-28814073 Msa1243270:CDS 55.0%
TCCGTCAATCCCCGATATGC+AGG - chr8_2:28814200-28814219 None:intergenic 55.0%
GGGGTACATGGTGGCAAACA+AGG + chr8_2:28814280-28814299 Msa1243270:CDS 55.0%
GTACTCGGATTTCACCCCAG+AGG + chr8_2:28814874-28814893 Msa1243270:intron 55.0%
GAGAACATAGACCCCTCACC+CGG + chr8_2:28814054-28814073 Msa1243270:CDS 55.0%
TCCGTCAATCCCCGATATGC+AGG - chr8_2:28814200-28814219 None:intergenic 55.0%
GGGGTACATGGTGGCAAACA+AGG + chr8_2:28814280-28814299 Msa1243270:CDS 55.0%
GTACTCGGATTTCACCCCAG+AGG + chr8_2:28814874-28814893 Msa1243270:intron 55.0%
AGCTATCTTCGGGGGAAGGC+AGG + chr8_2:28814404-28814423 Msa1243270:intron 60.0%
AGCTATCTTCGGGGGAAGGC+AGG + chr8_2:28814404-28814423 Msa1243270:intron 60.0%
TCTTCGGGGGAAGGCAGGCT+TGG + chr8_2:28814409-28814428 Msa1243270:intron 65.0%
TCTTCGGGGGAAGGCAGGCT+TGG + chr8_2:28814409-28814428 Msa1243270:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 28813669 28815258 28813669 ID=Msa1243270;Name=Msa1243270
chr8_2 mRNA 28813669 28815258 28813669 ID=Msa1243270-mRNA-1;Parent=Msa1243270;Name=Msa1243270-mRNA-1;_AED=0.22;_eAED=0.27;_QI=0|0|0|1|0|0|4|0|239
chr8_2 exon 28813669 28813876 28813669 ID=Msa1243270-mRNA-1:exon:9986;Parent=Msa1243270-mRNA-1
chr8_2 exon 28813886 28814104 28813886 ID=Msa1243270-mRNA-1:exon:9987;Parent=Msa1243270-mRNA-1
chr8_2 exon 28814117 28814316 28814117 ID=Msa1243270-mRNA-1:exon:9988;Parent=Msa1243270-mRNA-1
chr8_2 exon 28815169 28815258 28815169 ID=Msa1243270-mRNA-1:exon:9989;Parent=Msa1243270-mRNA-1
chr8_2 CDS 28813669 28813876 28813669 ID=Msa1243270-mRNA-1:cds;Parent=Msa1243270-mRNA-1
chr8_2 CDS 28813886 28814104 28813886 ID=Msa1243270-mRNA-1:cds;Parent=Msa1243270-mRNA-1
chr8_2 CDS 28814117 28814316 28814117 ID=Msa1243270-mRNA-1:cds;Parent=Msa1243270-mRNA-1
chr8_2 CDS 28815169 28815258 28815169 ID=Msa1243270-mRNA-1:cds;Parent=Msa1243270-mRNA-1
Gene Sequence

>Msa1243270

ATGGATAGCTCTGATGATTCTGATTTTAATTTTGATGAGGATGGAGATAATGGGTATTCTACTTCTAGTGAAGACGATGAAAGTATAGAGTCTAGAGACCACGATGTCTCTGGTGATTACAATGAGAATTTGGATTCTTGTGTAATAGATGGTAGGTTTGTTAAGATTAATACCATGACGGCGGATGATATTATGAATCTTGATTTTGAAGAAGCTTATGCCTTTTATCAAAAGTATGCAAAAAGCACCGGTTTCGTTGTTAGGAAAGATAAAGTGTACCGCAGCAAAGTTGGGAAACAAATTGTAATGCGACAGTTTGTGTGCAATAAAAATGGATTAAGAAGCAAAAAACACTTGACTAGGGTCAATAGGAAAAGAGAACATAGACCCCTCACCCGGAATAATTGTCCAGCTCGCCTTCGTATACAAAGCTTGAGATGGAGAGTGGTAATTTTTGAAGGGTGTCATAACCATGAACTAACCCCATCAAAATATATACATTTATTTCCTGCATATCGGGGATTGACGGACGCTGATAAAGCTCAAGTTGACAGTATGCAATCGTACGGTATCAAAACATGTCATATAATGGGGTACATGGTGGCAAACAAGGGTGGATATGATGCTAGTAATACCTCTGATCCGGTGTTGATAACTGGTCTGGATAATATTGAGAAAGATGCTGCAAAGATTTATACATCCGAGATATTCAAAAAA

Protein sequence

>Msa1243270

MDSSDDSDFNFDEDGDNGYSTSSEDDESIESRDHDVSGDYNENLDSCVIDGRFVKINTMTADDIMNLDFEEAYAFYQKYAKSTGFVVRKDKVYRSKVGKQIVMRQFVCNKNGLRSKKHLTRVNRKREHRPLTRNNCPARLRIQSLRWRVVIFEGCHNHELTPSKYIHLFPAYRGLTDADKAQVDSMQSYGIKTCHIMGYMVANKGGYDASNTSDPVLITGLDNIEKDAAKIYTSEIFKK