Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1243270 | XP_029126074.1 | 58.605 | 215 | 80 | 5 | 1 | 207 | 1 | 214 | 1.68e-67 | 234 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1243270 | sp|Q9SY66|FRS11_ARATH | 34.483 | 145 | 87 | 3 | 67 | 204 | 55 | 198 | 8.31e-17 | 82.4 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|---|---|
Msa1243270 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1243270 | MtrunA17_Chr2g0287651 | 51.934 | 181 | 79 | 3 | 34 | 207 | 46 | 225 | 4.70e-56 | 191 |
Msa1243270 | MtrunA17_Chr1g0203051 | 29.268 | 205 | 121 | 4 | 10 | 207 | 42 | 229 | 2.20e-29 | 115 |
Msa1243270 | MtrunA17_Chr1g0171741 | 30.964 | 197 | 103 | 6 | 12 | 187 | 78 | 262 | 7.39e-22 | 90.9 |
Msa1243270 | MtrunA17_Chr5g0448761 | 33.803 | 142 | 89 | 2 | 70 | 206 | 70 | 211 | 2.00e-16 | 78.2 |
Msa1243270 | MtrunA17_Chr2g0276841 | 34.286 | 140 | 84 | 3 | 72 | 204 | 82 | 220 | 3.05e-16 | 77.4 |
Msa1243270 | MtrunA17_Chr1g0203721 | 33.728 | 169 | 103 | 5 | 46 | 209 | 51 | 215 | 8.38e-15 | 73.6 |
Msa1243270 | MtrunA17_Chr6g0458391 | 40.141 | 142 | 71 | 6 | 54 | 184 | 214 | 352 | 4.01e-14 | 71.2 |
Msa1243270 | MtrunA17_Chr6g0458391 | 30.769 | 130 | 81 | 3 | 65 | 188 | 93 | 219 | 1.78e-12 | 66.6 |
Msa1243270 | MtrunA17_Chr2g0329361 | 31.677 | 161 | 93 | 7 | 11 | 160 | 10 | 164 | 5.67e-14 | 69.3 |
Msa1243270 | MtrunA17_Chr3g0082121 | 31.818 | 154 | 90 | 4 | 65 | 208 | 45 | 193 | 3.87e-13 | 68.6 |
Msa1243270 | MtrunA17_Chr8g0389811 | 28.758 | 153 | 85 | 5 | 36 | 168 | 47 | 195 | 5.39e-13 | 65.9 |
Msa1243270 | MtrunA17_Chr8g0363841 | 30.070 | 143 | 93 | 3 | 70 | 208 | 27 | 166 | 8.12e-13 | 67.4 |
Msa1243270 | MtrunA17_Chr1g0202341 | 30.128 | 156 | 103 | 3 | 69 | 221 | 60 | 212 | 1.11e-12 | 67.0 |
Msa1243270 | MtrunA17_Chr2g0329421 | 36.082 | 97 | 56 | 2 | 71 | 164 | 38 | 131 | 1.93e-12 | 64.3 |
Msa1243270 | MtrunA17_Chr1g0198761 | 30.519 | 154 | 93 | 4 | 70 | 211 | 57 | 208 | 2.31e-12 | 66.2 |
Msa1243270 | MtrunA17_Chr5g0431001 | 28.986 | 138 | 85 | 4 | 72 | 197 | 73 | 209 | 5.78e-12 | 64.7 |
Msa1243270 | MtrunA17_Chr4g0033611 | 33.333 | 120 | 73 | 3 | 72 | 187 | 88 | 204 | 3.02e-11 | 61.6 |
Msa1243270 | MtrunA17_Chr2g0290391 | 28.472 | 144 | 91 | 4 | 70 | 205 | 61 | 200 | 5.71e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1243270 | AT1G10240.2 | 34.483 | 145 | 87 | 3 | 67 | 204 | 55 | 198 | 8.45e-18 | 82.4 |
Msa1243270 | AT1G10240.1 | 34.483 | 145 | 87 | 3 | 67 | 204 | 55 | 198 | 8.45e-18 | 82.4 |
Msa1243270 | AT4G38180.1 | 29.817 | 218 | 126 | 6 | 14 | 206 | 8 | 223 | 1.74e-16 | 78.6 |
Msa1243270 | AT3G59470.2 | 30.247 | 162 | 103 | 4 | 10 | 164 | 28 | 186 | 5.92e-12 | 64.3 |
Msa1243270 | AT3G59470.3 | 30.247 | 162 | 103 | 4 | 10 | 164 | 16 | 174 | 6.16e-12 | 63.9 |
Msa1243270 | AT3G59470.1 | 30.247 | 162 | 103 | 4 | 10 | 164 | 16 | 174 | 6.16e-12 | 63.9 |
Msa1243270 | AT5G28530.3 | 26.761 | 142 | 96 | 3 | 70 | 205 | 65 | 204 | 4.65e-11 | 62.8 |
Msa1243270 | AT5G28530.2 | 26.761 | 142 | 96 | 3 | 70 | 205 | 65 | 204 | 4.65e-11 | 62.8 |
Msa1243270 | AT5G28530.1 | 26.761 | 142 | 96 | 3 | 70 | 205 | 65 | 204 | 4.65e-11 | 62.8 |
Msa1243270 | AT5G28530.4 | 27.465 | 142 | 95 | 3 | 70 | 205 | 65 | 204 | 6.69e-11 | 62.0 |
Msa1243270 | AT5G28530.5 | 27.465 | 142 | 95 | 3 | 70 | 205 | 65 | 204 | 7.32e-11 | 62.0 |
Find 46 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGTGATTACAATGAGAATT+TGG | 0.226630 | 8_2:+28813779 | Msa1243270:CDS |
GATATTATGAATCTTGATTT+TGG | 0.243439 | 8_2:+28813855 | Msa1243270:CDS |
TATCAAAACATGTCATATAA+TGG | 0.255086 | 8_2:+28814259 | Msa1243270:CDS |
TACATTTATTTCCTGCATAT+CGG | 0.267468 | 8_2:+28814186 | Msa1243270:CDS |
TTTGATGAGGATGGAGATAA+TGG | 0.283559 | 8_2:+28813699 | Msa1243270:CDS |
AAAGCACCGGTTTCGTTGTT+AGG | 0.291848 | 8_2:+28813919 | Msa1243270:CDS |
ATCAAAACATGTCATATAAT+GGG | 0.301079 | 8_2:+28814260 | Msa1243270:CDS |
ACATTTATTTCCTGCATATC+GGG | 0.352320 | 8_2:+28814187 | Msa1243270:CDS |
GGCGAGCTGGACAATTATTC+CGG | 0.353940 | 8_2:-28814073 | None:intergenic |
TTGGATTCTTGTGTAATAGA+TGG | 0.384545 | 8_2:+28813798 | Msa1243270:CDS |
TCTGATCCGGTGTTGATAAC+TGG | 0.398541 | 8_2:+28815178 | Msa1243270:CDS |
AACACTTGACTAGGGTCAAT+AGG | 0.418818 | 8_2:+28814027 | Msa1243270:CDS |
ATCTTTCCTAACAACGAAAC+CGG | 0.440915 | 8_2:-28813925 | None:intergenic |
AAAGTGTACCGCAGCAAAGT+TGG | 0.448110 | 8_2:+28813948 | Msa1243270:CDS |
GGGGTACATGGTGGCAAACA+AGG | 0.461825 | 8_2:+28814280 | Msa1243270:CDS |
AAGTGTACCGCAGCAAAGTT+GGG | 0.465894 | 8_2:+28813949 | Msa1243270:CDS |
TCCGGTGTTGATAACTGGTC+TGG | 0.467260 | 8_2:+28815183 | Msa1243270:CDS |
GCGAGCTGGACAATTATTCC+GGG | 0.478461 | 8_2:-28814072 | None:intergenic |
TCCTGCATATCGGGGATTGA+CGG | 0.482534 | 8_2:+28814196 | Msa1243270:CDS |
TCCGTCAATCCCCGATATGC+AGG | 0.483985 | 8_2:-28814197 | None:intergenic |
TAAGAGTAATACCTCTGATC+CGG | 0.486946 | 8_2:+28815165 | Msa1243270:intron |
TCTAGAGACCACGATGTCTC+TGG | 0.494750 | 8_2:+28813759 | Msa1243270:CDS |
TTGATGAGGATGGAGATAAT+GGG | 0.498718 | 8_2:+28813700 | Msa1243270:CDS |
TAACGTATACGAAGGCGAGC+TGG | 0.516616 | 8_2:-28814086 | None:intergenic |
CTGGACAATTATTCCGGGTG+AGG | 0.532213 | 8_2:-28814067 | None:intergenic |
ATTCTTGTGTAATAGATGGT+AGG | 0.533148 | 8_2:+28813802 | Msa1243270:CDS |
CATAATATCATCCGCCGTCA+TGG | 0.536322 | 8_2:-28813841 | None:intergenic |
ATGTCATATAATGGGGTACA+TGG | 0.556484 | 8_2:+28814268 | Msa1243270:CDS |
TGGACAATTATTCCGGGTGA+GGG | 0.565731 | 8_2:-28814066 | None:intergenic |
GAGAACATAGACCCCTCACC+CGG | 0.567472 | 8_2:+28814054 | Msa1243270:CDS |
CATTTATTTCCTGCATATCG+GGG | 0.582815 | 8_2:+28814188 | Msa1243270:CDS |
GGGTACATGGTGGCAAACAA+GGG | 0.589509 | 8_2:+28814281 | Msa1243270:CDS |
TGTTAAGATTAATACCATGA+CGG | 0.594275 | 8_2:+28813827 | Msa1243270:CDS |
GTTGACAGTATGCAATCGTA+CGG | 0.607441 | 8_2:+28814236 | Msa1243270:CDS |
TACATGGTGGCAAACAAGGG+TGG | 0.611316 | 8_2:+28814284 | Msa1243270:CDS |
AGTTATCAACACCGGATCAG+AGG | 0.615238 | 8_2:-28815176 | None:intergenic |
CTGGATTATAACGTATACGA+AGG | 0.628678 | 8_2:-28814094 | None:intergenic |
TCCAGACCAGTTATCAACAC+CGG | 0.632781 | 8_2:-28815184 | None:intergenic |
ATAATCCAGAAAGCTTGAGA+TGG | 0.638128 | 8_2:+28814108 | Msa1243270:intron |
AGAAAGCTTGAGATGGAGAG+TGG | 0.639417 | 8_2:+28814115 | Msa1243270:intron |
GGACAATTATTCCGGGTGAG+GGG | 0.643647 | 8_2:-28814065 | None:intergenic |
TCAAAACATGTCATATAATG+GGG | 0.649125 | 8_2:+28814261 | Msa1243270:CDS |
TCATATAATGGGGTACATGG+TGG | 0.662255 | 8_2:+28814271 | Msa1243270:CDS |
TTTGTTTCCCAACTTTGCTG+CGG | 0.666357 | 8_2:-28813956 | None:intergenic |
TGTAATCACCAGAGACATCG+TGG | 0.695321 | 8_2:-28813767 | None:intergenic |
TAAGATTAATACCATGACGG+CGG | 0.698475 | 8_2:+28813830 | Msa1243270:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATAAATGTATATATTTTGAT+GGG | - | chr8_2:28814175-28814194 | None:intergenic | 10.0% |
!!! | AATAAATGTATATATTTTGA+TGG | - | chr8_2:28814176-28814195 | None:intergenic | 10.0% |
!!! | ATAAATGTATATATTTTGAT+GGG | - | chr8_2:28814175-28814194 | None:intergenic | 10.0% |
!!! | AATAAATGTATATATTTTGA+TGG | - | chr8_2:28814176-28814195 | None:intergenic | 10.0% |
!!! | TAAATGTATATATTTTGATG+GGG | - | chr8_2:28814174-28814193 | None:intergenic | 15.0% |
!!! | AAAGATTTGTATAACTATTT+TGG | + | chr8_2:28814332-28814351 | Msa1243270:intron | 15.0% |
!!! | TCATATTTTACATATAACAT+AGG | - | chr8_2:28814437-28814456 | None:intergenic | 15.0% |
!! | TTATATGTAAAATATGAGAA+GGG | + | chr8_2:28814440-28814459 | Msa1243270:intron | 15.0% |
!!! | AAAATTGAAAAGATTGTTTT+GGG | + | chr8_2:28814472-28814491 | Msa1243270:intron | 15.0% |
!!! | TAAATGTATATATTTTGATG+GGG | - | chr8_2:28814174-28814193 | None:intergenic | 15.0% |
!!! | AAAGATTTGTATAACTATTT+TGG | + | chr8_2:28814332-28814351 | Msa1243270:intron | 15.0% |
!!! | TCATATTTTACATATAACAT+AGG | - | chr8_2:28814437-28814456 | None:intergenic | 15.0% |
!! | TTATATGTAAAATATGAGAA+GGG | + | chr8_2:28814440-28814459 | Msa1243270:intron | 15.0% |
!!! | AAAATTGAAAAGATTGTTTT+GGG | + | chr8_2:28814472-28814491 | Msa1243270:intron | 15.0% |
!!! | TTCTGATTTTAATTTTGATG+AGG | + | chr8_2:28813686-28813705 | Msa1243270:CDS | 20.0% |
!!! | GATATTATGAATCTTGATTT+TGG | + | chr8_2:28813855-28813874 | Msa1243270:CDS | 20.0% |
!!! | TTTTGCATACTTTTGATAAA+AGG | - | chr8_2:28813901-28813920 | None:intergenic | 20.0% |
!! | TATCAAAACATGTCATATAA+TGG | + | chr8_2:28814259-28814278 | Msa1243270:CDS | 20.0% |
!! | ATCAAAACATGTCATATAAT+GGG | + | chr8_2:28814260-28814279 | Msa1243270:CDS | 20.0% |
!! | GTTATATGTAAAATATGAGA+AGG | + | chr8_2:28814439-28814458 | Msa1243270:intron | 20.0% |
!!! | GAAAATTGAAAAGATTGTTT+TGG | + | chr8_2:28814471-28814490 | Msa1243270:intron | 20.0% |
!!! | GTATTTATTTTTCTTGTATG+TGG | - | chr8_2:28814555-28814574 | None:intergenic | 20.0% |
!! | AAATAAATACAATCTTCCTT+TGG | + | chr8_2:28814565-28814584 | Msa1243270:intron | 20.0% |
!!! | ATTCACAAACGATTATTTTT+GGG | + | chr8_2:28814612-28814631 | Msa1243270:intron | 20.0% |
!!! | TTCTGATTTTAATTTTGATG+AGG | + | chr8_2:28813686-28813705 | Msa1243270:CDS | 20.0% |
!!! | GATATTATGAATCTTGATTT+TGG | + | chr8_2:28813855-28813874 | Msa1243270:CDS | 20.0% |
!!! | TTTTGCATACTTTTGATAAA+AGG | - | chr8_2:28813901-28813920 | None:intergenic | 20.0% |
!! | TATCAAAACATGTCATATAA+TGG | + | chr8_2:28814259-28814278 | Msa1243270:CDS | 20.0% |
!! | ATCAAAACATGTCATATAAT+GGG | + | chr8_2:28814260-28814279 | Msa1243270:CDS | 20.0% |
!! | GTTATATGTAAAATATGAGA+AGG | + | chr8_2:28814439-28814458 | Msa1243270:intron | 20.0% |
!!! | GAAAATTGAAAAGATTGTTT+TGG | + | chr8_2:28814471-28814490 | Msa1243270:intron | 20.0% |
!!! | GTATTTATTTTTCTTGTATG+TGG | - | chr8_2:28814555-28814574 | None:intergenic | 20.0% |
!! | AAATAAATACAATCTTCCTT+TGG | + | chr8_2:28814565-28814584 | Msa1243270:intron | 20.0% |
!!! | ATTCACAAACGATTATTTTT+GGG | + | chr8_2:28814612-28814631 | Msa1243270:intron | 20.0% |
!!! | GATTTTAATTTTGATGAGGA+TGG | + | chr8_2:28813690-28813709 | Msa1243270:CDS | 25.0% |
! | TGTTAAGATTAATACCATGA+CGG | + | chr8_2:28813827-28813846 | Msa1243270:CDS | 25.0% |
! | TACATTTATTTCCTGCATAT+CGG | + | chr8_2:28814186-28814205 | Msa1243270:CDS | 25.0% |
! | TCAAAACATGTCATATAATG+GGG | + | chr8_2:28814261-28814280 | Msa1243270:CDS | 25.0% |
!!! | TAACTATTTTGGCAAGAAAA+TGG | + | chr8_2:28814343-28814362 | Msa1243270:intron | 25.0% |
!!! | AACTATTTTGGCAAGAAAAT+GGG | + | chr8_2:28814344-28814363 | Msa1243270:intron | 25.0% |
!!! | ATGGGTATTGATATTAAAGA+TGG | + | chr8_2:28814362-28814381 | Msa1243270:intron | 25.0% |
!! | CAATCTTTTCAATTTTCCAT+TGG | - | chr8_2:28814468-28814487 | None:intergenic | 25.0% |
!!! | CGAAATGATTTTTTGTGTTA+TGG | + | chr8_2:28814509-28814528 | Msa1243270:intron | 25.0% |
! | CAAAAATAATCGTTTGTGAA+TGG | - | chr8_2:28814613-28814632 | None:intergenic | 25.0% |
!! | CATTCACAAACGATTATTTT+TGG | + | chr8_2:28814611-28814630 | Msa1243270:intron | 25.0% |
!!! | TTCACAAACGATTATTTTTG+GGG | + | chr8_2:28814613-28814632 | Msa1243270:intron | 25.0% |
! | AAACAATAGAGACATATACA+TGG | + | chr8_2:28814654-28814673 | Msa1243270:intron | 25.0% |
! | AACAATAGAGACATATACAT+GGG | + | chr8_2:28814655-28814674 | Msa1243270:intron | 25.0% |
!! | AATTCATTTCTAGAAGCAAT+GGG | + | chr8_2:28814683-28814702 | Msa1243270:intron | 25.0% |
! | ATACGAGAACAAGAAATTAT+GGG | + | chr8_2:28814967-28814986 | Msa1243270:intron | 25.0% |
!!! | TACTTTCGAGATAAGTTTTT+TGG | + | chr8_2:28814998-28815017 | Msa1243270:intron | 25.0% |
!!! | GATTTTAATTTTGATGAGGA+TGG | + | chr8_2:28813690-28813709 | Msa1243270:CDS | 25.0% |
! | TGTTAAGATTAATACCATGA+CGG | + | chr8_2:28813827-28813846 | Msa1243270:CDS | 25.0% |
! | TACATTTATTTCCTGCATAT+CGG | + | chr8_2:28814186-28814205 | Msa1243270:CDS | 25.0% |
! | TCAAAACATGTCATATAATG+GGG | + | chr8_2:28814261-28814280 | Msa1243270:CDS | 25.0% |
!!! | TAACTATTTTGGCAAGAAAA+TGG | + | chr8_2:28814343-28814362 | Msa1243270:intron | 25.0% |
!!! | AACTATTTTGGCAAGAAAAT+GGG | + | chr8_2:28814344-28814363 | Msa1243270:intron | 25.0% |
!!! | ATGGGTATTGATATTAAAGA+TGG | + | chr8_2:28814362-28814381 | Msa1243270:intron | 25.0% |
!! | CAATCTTTTCAATTTTCCAT+TGG | - | chr8_2:28814468-28814487 | None:intergenic | 25.0% |
!!! | CGAAATGATTTTTTGTGTTA+TGG | + | chr8_2:28814509-28814528 | Msa1243270:intron | 25.0% |
! | CAAAAATAATCGTTTGTGAA+TGG | - | chr8_2:28814613-28814632 | None:intergenic | 25.0% |
!! | CATTCACAAACGATTATTTT+TGG | + | chr8_2:28814611-28814630 | Msa1243270:intron | 25.0% |
!!! | TTCACAAACGATTATTTTTG+GGG | + | chr8_2:28814613-28814632 | Msa1243270:intron | 25.0% |
! | AAACAATAGAGACATATACA+TGG | + | chr8_2:28814654-28814673 | Msa1243270:intron | 25.0% |
! | AACAATAGAGACATATACAT+GGG | + | chr8_2:28814655-28814674 | Msa1243270:intron | 25.0% |
!! | AATTCATTTCTAGAAGCAAT+GGG | + | chr8_2:28814683-28814702 | Msa1243270:intron | 25.0% |
! | ATACGAGAACAAGAAATTAT+GGG | + | chr8_2:28814967-28814986 | Msa1243270:intron | 25.0% |
!!! | TACTTTCGAGATAAGTTTTT+TGG | + | chr8_2:28814998-28815017 | Msa1243270:intron | 25.0% |
TGGTGATTACAATGAGAATT+TGG | + | chr8_2:28813779-28813798 | Msa1243270:CDS | 30.0% | |
TTGGATTCTTGTGTAATAGA+TGG | + | chr8_2:28813798-28813817 | Msa1243270:CDS | 30.0% | |
ATTCTTGTGTAATAGATGGT+AGG | + | chr8_2:28813802-28813821 | Msa1243270:CDS | 30.0% | |
CAGTTTGTGTGCAATAAAAA+TGG | + | chr8_2:28813990-28814009 | Msa1243270:CDS | 30.0% | |
AAGCAAAAAACACTTGACTA+GGG | + | chr8_2:28814019-28814038 | Msa1243270:CDS | 30.0% | |
ACATTTATTTCCTGCATATC+GGG | + | chr8_2:28814187-28814206 | Msa1243270:CDS | 30.0% | |
! | GAATTCATTTCTAGAAGCAA+TGG | + | chr8_2:28814682-28814701 | Msa1243270:intron | 30.0% |
TTTCAAGAAAGCAATGTACT+CGG | + | chr8_2:28814859-28814878 | Msa1243270:intron | 30.0% | |
AAAACTCTTCAAATTCCTCT+GGG | - | chr8_2:28814892-28814911 | None:intergenic | 30.0% | |
! | AGAGGAATTTGAAGAGTTTT+GGG | + | chr8_2:28814892-28814911 | Msa1243270:intron | 30.0% |
! | TTTCTTGTTCTCGTATGTTT+TGG | - | chr8_2:28814963-28814982 | None:intergenic | 30.0% |
CATACGAGAACAAGAAATTA+TGG | + | chr8_2:28814966-28814985 | Msa1243270:intron | 30.0% | |
! | AAACTTATCTCGAAAGTATG+CGG | - | chr8_2:28814996-28815015 | None:intergenic | 30.0% |
!!! | ATAAGTTTTTTGGTCGCATA+CGG | + | chr8_2:28815008-28815027 | Msa1243270:intron | 30.0% |
TGGTGATTACAATGAGAATT+TGG | + | chr8_2:28813779-28813798 | Msa1243270:CDS | 30.0% | |
TTGGATTCTTGTGTAATAGA+TGG | + | chr8_2:28813798-28813817 | Msa1243270:CDS | 30.0% | |
ATTCTTGTGTAATAGATGGT+AGG | + | chr8_2:28813802-28813821 | Msa1243270:CDS | 30.0% | |
CAGTTTGTGTGCAATAAAAA+TGG | + | chr8_2:28813990-28814009 | Msa1243270:CDS | 30.0% | |
AAGCAAAAAACACTTGACTA+GGG | + | chr8_2:28814019-28814038 | Msa1243270:CDS | 30.0% | |
ACATTTATTTCCTGCATATC+GGG | + | chr8_2:28814187-28814206 | Msa1243270:CDS | 30.0% | |
! | GAATTCATTTCTAGAAGCAA+TGG | + | chr8_2:28814682-28814701 | Msa1243270:intron | 30.0% |
TTTCAAGAAAGCAATGTACT+CGG | + | chr8_2:28814859-28814878 | Msa1243270:intron | 30.0% | |
AAAACTCTTCAAATTCCTCT+GGG | - | chr8_2:28814892-28814911 | None:intergenic | 30.0% | |
! | AGAGGAATTTGAAGAGTTTT+GGG | + | chr8_2:28814892-28814911 | Msa1243270:intron | 30.0% |
! | TTTCTTGTTCTCGTATGTTT+TGG | - | chr8_2:28814963-28814982 | None:intergenic | 30.0% |
CATACGAGAACAAGAAATTA+TGG | + | chr8_2:28814966-28814985 | Msa1243270:intron | 30.0% | |
! | AAACTTATCTCGAAAGTATG+CGG | - | chr8_2:28814996-28815015 | None:intergenic | 30.0% |
!!! | ATAAGTTTTTTGGTCGCATA+CGG | + | chr8_2:28815008-28815027 | Msa1243270:intron | 30.0% |
TTTGATGAGGATGGAGATAA+TGG | + | chr8_2:28813699-28813718 | Msa1243270:CDS | 35.0% | |
TTGATGAGGATGGAGATAAT+GGG | + | chr8_2:28813700-28813719 | Msa1243270:CDS | 35.0% | |
TAAGATTAATACCATGACGG+CGG | + | chr8_2:28813830-28813849 | Msa1243270:CDS | 35.0% | |
! | CAAAAGTATGCAAAAAGCAC+CGG | + | chr8_2:28813906-28813925 | Msa1243270:CDS | 35.0% |
ATCTTTCCTAACAACGAAAC+CGG | - | chr8_2:28813928-28813947 | None:intergenic | 35.0% | |
GAAGCAAAAAACACTTGACT+AGG | + | chr8_2:28814018-28814037 | Msa1243270:CDS | 35.0% | |
CTGGATTATAACGTATACGA+AGG | - | chr8_2:28814097-28814116 | None:intergenic | 35.0% | |
ATAATCCAGAAAGCTTGAGA+TGG | + | chr8_2:28814108-28814127 | Msa1243270:intron | 35.0% | |
! | TGGAGAGTGGTAATTTTTGA+AGG | + | chr8_2:28814128-28814147 | Msa1243270:CDS | 35.0% |
! | GGAGAGTGGTAATTTTTGAA+GGG | + | chr8_2:28814129-28814148 | Msa1243270:CDS | 35.0% |
!!! | ATTTTGATGGGGTTAGTTCA+TGG | - | chr8_2:28814163-28814182 | None:intergenic | 35.0% |
CATTTATTTCCTGCATATCG+GGG | + | chr8_2:28814188-28814207 | Msa1243270:CDS | 35.0% | |
! | ATGTCATATAATGGGGTACA+TGG | + | chr8_2:28814268-28814287 | Msa1243270:CDS | 35.0% |
TTGCTTCTCTAAGCTATCTT+CGG | + | chr8_2:28814393-28814412 | Msa1243270:intron | 35.0% | |
!! | AAATATGAGAAGGGTACCAA+TGG | + | chr8_2:28814449-28814468 | Msa1243270:intron | 35.0% |
!!! | AAAAGATTGTTTTGGGCAGA+TGG | + | chr8_2:28814479-28814498 | Msa1243270:intron | 35.0% |
! | CTTCCTTTGGTAATATTCTC+TGG | + | chr8_2:28814578-28814597 | Msa1243270:intron | 35.0% |
AAACTCTTCAAATTCCTCTG+GGG | - | chr8_2:28814891-28814910 | None:intergenic | 35.0% | |
CAAAACTCTTCAAATTCCTC+TGG | - | chr8_2:28814893-28814912 | None:intergenic | 35.0% | |
! | CAGAGGAATTTGAAGAGTTT+TGG | + | chr8_2:28814891-28814910 | Msa1243270:intron | 35.0% |
TGAGCTACAAGGTAACAATT+GGG | + | chr8_2:28814934-28814953 | Msa1243270:intron | 35.0% | |
TTCTATACTCTCTCAATGTG+TGG | - | chr8_2:28815123-28815142 | None:intergenic | 35.0% | |
TAAGAGTAATACCTCTGATC+CGG | + | chr8_2:28815165-28815184 | Msa1243270:intron | 35.0% | |
TTTGATGAGGATGGAGATAA+TGG | + | chr8_2:28813699-28813718 | Msa1243270:CDS | 35.0% | |
TTGATGAGGATGGAGATAAT+GGG | + | chr8_2:28813700-28813719 | Msa1243270:CDS | 35.0% | |
TAAGATTAATACCATGACGG+CGG | + | chr8_2:28813830-28813849 | Msa1243270:CDS | 35.0% | |
! | CAAAAGTATGCAAAAAGCAC+CGG | + | chr8_2:28813906-28813925 | Msa1243270:CDS | 35.0% |
ATCTTTCCTAACAACGAAAC+CGG | - | chr8_2:28813928-28813947 | None:intergenic | 35.0% | |
GAAGCAAAAAACACTTGACT+AGG | + | chr8_2:28814018-28814037 | Msa1243270:CDS | 35.0% | |
CTGGATTATAACGTATACGA+AGG | - | chr8_2:28814097-28814116 | None:intergenic | 35.0% | |
ATAATCCAGAAAGCTTGAGA+TGG | + | chr8_2:28814108-28814127 | Msa1243270:intron | 35.0% | |
! | TGGAGAGTGGTAATTTTTGA+AGG | + | chr8_2:28814128-28814147 | Msa1243270:CDS | 35.0% |
! | GGAGAGTGGTAATTTTTGAA+GGG | + | chr8_2:28814129-28814148 | Msa1243270:CDS | 35.0% |
!!! | ATTTTGATGGGGTTAGTTCA+TGG | - | chr8_2:28814163-28814182 | None:intergenic | 35.0% |
CATTTATTTCCTGCATATCG+GGG | + | chr8_2:28814188-28814207 | Msa1243270:CDS | 35.0% | |
! | ATGTCATATAATGGGGTACA+TGG | + | chr8_2:28814268-28814287 | Msa1243270:CDS | 35.0% |
TTGCTTCTCTAAGCTATCTT+CGG | + | chr8_2:28814393-28814412 | Msa1243270:intron | 35.0% | |
!! | AAATATGAGAAGGGTACCAA+TGG | + | chr8_2:28814449-28814468 | Msa1243270:intron | 35.0% |
!!! | AAAAGATTGTTTTGGGCAGA+TGG | + | chr8_2:28814479-28814498 | Msa1243270:intron | 35.0% |
! | CTTCCTTTGGTAATATTCTC+TGG | + | chr8_2:28814578-28814597 | Msa1243270:intron | 35.0% |
AAACTCTTCAAATTCCTCTG+GGG | - | chr8_2:28814891-28814910 | None:intergenic | 35.0% | |
CAAAACTCTTCAAATTCCTC+TGG | - | chr8_2:28814893-28814912 | None:intergenic | 35.0% | |
! | CAGAGGAATTTGAAGAGTTT+TGG | + | chr8_2:28814891-28814910 | Msa1243270:intron | 35.0% |
TGAGCTACAAGGTAACAATT+GGG | + | chr8_2:28814934-28814953 | Msa1243270:intron | 35.0% | |
TTCTATACTCTCTCAATGTG+TGG | - | chr8_2:28815123-28815142 | None:intergenic | 35.0% | |
TAAGAGTAATACCTCTGATC+CGG | + | chr8_2:28815165-28815184 | Msa1243270:intron | 35.0% | |
TTTGTTTCCCAACTTTGCTG+CGG | - | chr8_2:28813959-28813978 | None:intergenic | 40.0% | |
AACACTTGACTAGGGTCAAT+AGG | + | chr8_2:28814027-28814046 | Msa1243270:CDS | 40.0% | |
GTTGACAGTATGCAATCGTA+CGG | + | chr8_2:28814236-28814255 | Msa1243270:CDS | 40.0% | |
! | TCATATAATGGGGTACATGG+TGG | + | chr8_2:28814271-28814290 | Msa1243270:CDS | 40.0% |
TGCTTCTCTAAGCTATCTTC+GGG | + | chr8_2:28814394-28814413 | Msa1243270:intron | 40.0% | |
CAGCCAGAGAATATTACCAA+AGG | - | chr8_2:28814584-28814603 | None:intergenic | 40.0% | |
!!! | GATTATTTTTGGGGCTGCTT+TGG | + | chr8_2:28814622-28814641 | Msa1243270:intron | 40.0% |
ACAACCAAAAGCAGTAGTGA+CGG | + | chr8_2:28814712-28814731 | Msa1243270:intron | 40.0% | |
ACACAGTCTGTGAAATGCTT+CGG | - | chr8_2:28814780-28814799 | None:intergenic | 40.0% | |
GTGAGCTACAAGGTAACAAT+TGG | + | chr8_2:28814933-28814952 | Msa1243270:intron | 40.0% | |
ATTGATTGCTTCACACTGAG+AGG | - | chr8_2:28815038-28815057 | None:intergenic | 40.0% | |
ATGTGTGGTCAAAGTTATGC+AGG | - | chr8_2:28815108-28815127 | None:intergenic | 40.0% | |
TTTGTTTCCCAACTTTGCTG+CGG | - | chr8_2:28813959-28813978 | None:intergenic | 40.0% | |
AACACTTGACTAGGGTCAAT+AGG | + | chr8_2:28814027-28814046 | Msa1243270:CDS | 40.0% | |
GTTGACAGTATGCAATCGTA+CGG | + | chr8_2:28814236-28814255 | Msa1243270:CDS | 40.0% | |
! | TCATATAATGGGGTACATGG+TGG | + | chr8_2:28814271-28814290 | Msa1243270:CDS | 40.0% |
TGCTTCTCTAAGCTATCTTC+GGG | + | chr8_2:28814394-28814413 | Msa1243270:intron | 40.0% | |
CAGCCAGAGAATATTACCAA+AGG | - | chr8_2:28814584-28814603 | None:intergenic | 40.0% | |
!!! | GATTATTTTTGGGGCTGCTT+TGG | + | chr8_2:28814622-28814641 | Msa1243270:intron | 40.0% |
ACAACCAAAAGCAGTAGTGA+CGG | + | chr8_2:28814712-28814731 | Msa1243270:intron | 40.0% | |
ACACAGTCTGTGAAATGCTT+CGG | - | chr8_2:28814780-28814799 | None:intergenic | 40.0% | |
GTGAGCTACAAGGTAACAAT+TGG | + | chr8_2:28814933-28814952 | Msa1243270:intron | 40.0% | |
ATTGATTGCTTCACACTGAG+AGG | - | chr8_2:28815038-28815057 | None:intergenic | 40.0% | |
ATGTGTGGTCAAAGTTATGC+AGG | - | chr8_2:28815108-28815127 | None:intergenic | 40.0% | |
TGTAATCACCAGAGACATCG+TGG | - | chr8_2:28813770-28813789 | None:intergenic | 45.0% | |
CATAATATCATCCGCCGTCA+TGG | - | chr8_2:28813844-28813863 | None:intergenic | 45.0% | |
!! | AAAGCACCGGTTTCGTTGTT+AGG | + | chr8_2:28813919-28813938 | Msa1243270:CDS | 45.0% |
AAAGTGTACCGCAGCAAAGT+TGG | + | chr8_2:28813948-28813967 | Msa1243270:CDS | 45.0% | |
AAGTGTACCGCAGCAAAGTT+GGG | + | chr8_2:28813949-28813968 | Msa1243270:CDS | 45.0% | |
TGGACAATTATTCCGGGTGA+GGG | - | chr8_2:28814069-28814088 | None:intergenic | 45.0% | |
ACTCTCCATCTCAAGCTTTC+TGG | - | chr8_2:28814116-28814135 | None:intergenic | 45.0% | |
AGAAAGCTTGAGATGGAGAG+TGG | + | chr8_2:28814115-28814134 | Msa1243270:intron | 45.0% | |
AAGGGTGGATATGATGCTGT+TGG | + | chr8_2:28814299-28814318 | Msa1243270:intron | 45.0% | |
GCTTCTCTAAGCTATCTTCG+GGG | + | chr8_2:28814395-28814414 | Msa1243270:intron | 45.0% | |
CTTCTCTAAGCTATCTTCGG+GGG | + | chr8_2:28814396-28814415 | Msa1243270:intron | 45.0% | |
!!! | GATTGTTTTGGGCAGATGGA+TGG | + | chr8_2:28814483-28814502 | Msa1243270:intron | 45.0% |
GGATGGTGACATGTCTATGA+GGG | + | chr8_2:28814733-28814752 | Msa1243270:intron | 45.0% | |
CACAGTCTGTGAAATGCTTC+GGG | - | chr8_2:28814779-28814798 | None:intergenic | 45.0% | |
AGCATTCTTGTGCAAATGCC+AGG | - | chr8_2:28814804-28814823 | None:intergenic | 45.0% | |
GTTGAGATGAGTGAGCTACA+AGG | + | chr8_2:28814923-28814942 | Msa1243270:intron | 45.0% | |
AGTTATCAACACCGGATCAG+AGG | - | chr8_2:28815179-28815198 | None:intergenic | 45.0% | |
!! | TCTGATCCGGTGTTGATAAC+TGG | + | chr8_2:28815178-28815197 | Msa1243270:CDS | 45.0% |
TCCAGACCAGTTATCAACAC+CGG | - | chr8_2:28815187-28815206 | None:intergenic | 45.0% | |
TGTAATCACCAGAGACATCG+TGG | - | chr8_2:28813770-28813789 | None:intergenic | 45.0% | |
CATAATATCATCCGCCGTCA+TGG | - | chr8_2:28813844-28813863 | None:intergenic | 45.0% | |
!! | AAAGCACCGGTTTCGTTGTT+AGG | + | chr8_2:28813919-28813938 | Msa1243270:CDS | 45.0% |
AAAGTGTACCGCAGCAAAGT+TGG | + | chr8_2:28813948-28813967 | Msa1243270:CDS | 45.0% | |
AAGTGTACCGCAGCAAAGTT+GGG | + | chr8_2:28813949-28813968 | Msa1243270:CDS | 45.0% | |
TGGACAATTATTCCGGGTGA+GGG | - | chr8_2:28814069-28814088 | None:intergenic | 45.0% | |
ACTCTCCATCTCAAGCTTTC+TGG | - | chr8_2:28814116-28814135 | None:intergenic | 45.0% | |
AGAAAGCTTGAGATGGAGAG+TGG | + | chr8_2:28814115-28814134 | Msa1243270:intron | 45.0% | |
AAGGGTGGATATGATGCTGT+TGG | + | chr8_2:28814299-28814318 | Msa1243270:intron | 45.0% | |
GCTTCTCTAAGCTATCTTCG+GGG | + | chr8_2:28814395-28814414 | Msa1243270:intron | 45.0% | |
CTTCTCTAAGCTATCTTCGG+GGG | + | chr8_2:28814396-28814415 | Msa1243270:intron | 45.0% | |
!!! | GATTGTTTTGGGCAGATGGA+TGG | + | chr8_2:28814483-28814502 | Msa1243270:intron | 45.0% |
GGATGGTGACATGTCTATGA+GGG | + | chr8_2:28814733-28814752 | Msa1243270:intron | 45.0% | |
CACAGTCTGTGAAATGCTTC+GGG | - | chr8_2:28814779-28814798 | None:intergenic | 45.0% | |
AGCATTCTTGTGCAAATGCC+AGG | - | chr8_2:28814804-28814823 | None:intergenic | 45.0% | |
GTTGAGATGAGTGAGCTACA+AGG | + | chr8_2:28814923-28814942 | Msa1243270:intron | 45.0% | |
AGTTATCAACACCGGATCAG+AGG | - | chr8_2:28815179-28815198 | None:intergenic | 45.0% | |
!! | TCTGATCCGGTGTTGATAAC+TGG | + | chr8_2:28815178-28815197 | Msa1243270:CDS | 45.0% |
TCCAGACCAGTTATCAACAC+CGG | - | chr8_2:28815187-28815206 | None:intergenic | 45.0% | |
TCTAGAGACCACGATGTCTC+TGG | + | chr8_2:28813759-28813778 | Msa1243270:CDS | 50.0% | |
GGACAATTATTCCGGGTGAG+GGG | - | chr8_2:28814068-28814087 | None:intergenic | 50.0% | |
CTGGACAATTATTCCGGGTG+AGG | - | chr8_2:28814070-28814089 | None:intergenic | 50.0% | |
GCGAGCTGGACAATTATTCC+GGG | - | chr8_2:28814075-28814094 | None:intergenic | 50.0% | |
GGCGAGCTGGACAATTATTC+CGG | - | chr8_2:28814076-28814095 | None:intergenic | 50.0% | |
TAACGTATACGAAGGCGAGC+TGG | - | chr8_2:28814089-28814108 | None:intergenic | 50.0% | |
TCCTGCATATCGGGGATTGA+CGG | + | chr8_2:28814196-28814215 | Msa1243270:CDS | 50.0% | |
GGGTACATGGTGGCAAACAA+GGG | + | chr8_2:28814281-28814300 | Msa1243270:CDS | 50.0% | |
TACATGGTGGCAAACAAGGG+TGG | + | chr8_2:28814284-28814303 | Msa1243270:CDS | 50.0% | |
TCTAAGCTATCTTCGGGGGA+AGG | + | chr8_2:28814400-28814419 | Msa1243270:intron | 50.0% | |
! | CCATCCGTCACTACTGCTTT+TGG | - | chr8_2:28814719-28814738 | None:intergenic | 50.0% |
! | CCAAAAGCAGTAGTGACGGA+TGG | + | chr8_2:28814716-28814735 | Msa1243270:intron | 50.0% |
CGGATGGTGACATGTCTATG+AGG | + | chr8_2:28814732-28814751 | Msa1243270:intron | 50.0% | |
CATTTCACAGACTGTGTGCC+TGG | + | chr8_2:28814783-28814802 | Msa1243270:intron | 50.0% | |
!! | TCCGGTGTTGATAACTGGTC+TGG | + | chr8_2:28815183-28815202 | Msa1243270:CDS | 50.0% |
TCTAGAGACCACGATGTCTC+TGG | + | chr8_2:28813759-28813778 | Msa1243270:CDS | 50.0% | |
GGACAATTATTCCGGGTGAG+GGG | - | chr8_2:28814068-28814087 | None:intergenic | 50.0% | |
CTGGACAATTATTCCGGGTG+AGG | - | chr8_2:28814070-28814089 | None:intergenic | 50.0% | |
GCGAGCTGGACAATTATTCC+GGG | - | chr8_2:28814075-28814094 | None:intergenic | 50.0% | |
GGCGAGCTGGACAATTATTC+CGG | - | chr8_2:28814076-28814095 | None:intergenic | 50.0% | |
TAACGTATACGAAGGCGAGC+TGG | - | chr8_2:28814089-28814108 | None:intergenic | 50.0% | |
TCCTGCATATCGGGGATTGA+CGG | + | chr8_2:28814196-28814215 | Msa1243270:CDS | 50.0% | |
GGGTACATGGTGGCAAACAA+GGG | + | chr8_2:28814281-28814300 | Msa1243270:CDS | 50.0% | |
TACATGGTGGCAAACAAGGG+TGG | + | chr8_2:28814284-28814303 | Msa1243270:CDS | 50.0% | |
TCTAAGCTATCTTCGGGGGA+AGG | + | chr8_2:28814400-28814419 | Msa1243270:intron | 50.0% | |
! | CCATCCGTCACTACTGCTTT+TGG | - | chr8_2:28814719-28814738 | None:intergenic | 50.0% |
! | CCAAAAGCAGTAGTGACGGA+TGG | + | chr8_2:28814716-28814735 | Msa1243270:intron | 50.0% |
CGGATGGTGACATGTCTATG+AGG | + | chr8_2:28814732-28814751 | Msa1243270:intron | 50.0% | |
CATTTCACAGACTGTGTGCC+TGG | + | chr8_2:28814783-28814802 | Msa1243270:intron | 50.0% | |
!! | TCCGGTGTTGATAACTGGTC+TGG | + | chr8_2:28815183-28815202 | Msa1243270:CDS | 50.0% |
GAGAACATAGACCCCTCACC+CGG | + | chr8_2:28814054-28814073 | Msa1243270:CDS | 55.0% | |
TCCGTCAATCCCCGATATGC+AGG | - | chr8_2:28814200-28814219 | None:intergenic | 55.0% | |
GGGGTACATGGTGGCAAACA+AGG | + | chr8_2:28814280-28814299 | Msa1243270:CDS | 55.0% | |
GTACTCGGATTTCACCCCAG+AGG | + | chr8_2:28814874-28814893 | Msa1243270:intron | 55.0% | |
GAGAACATAGACCCCTCACC+CGG | + | chr8_2:28814054-28814073 | Msa1243270:CDS | 55.0% | |
TCCGTCAATCCCCGATATGC+AGG | - | chr8_2:28814200-28814219 | None:intergenic | 55.0% | |
GGGGTACATGGTGGCAAACA+AGG | + | chr8_2:28814280-28814299 | Msa1243270:CDS | 55.0% | |
GTACTCGGATTTCACCCCAG+AGG | + | chr8_2:28814874-28814893 | Msa1243270:intron | 55.0% | |
AGCTATCTTCGGGGGAAGGC+AGG | + | chr8_2:28814404-28814423 | Msa1243270:intron | 60.0% | |
AGCTATCTTCGGGGGAAGGC+AGG | + | chr8_2:28814404-28814423 | Msa1243270:intron | 60.0% | |
TCTTCGGGGGAAGGCAGGCT+TGG | + | chr8_2:28814409-28814428 | Msa1243270:intron | 65.0% | |
TCTTCGGGGGAAGGCAGGCT+TGG | + | chr8_2:28814409-28814428 | Msa1243270:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_2 | gene | 28813669 | 28815258 | 28813669 | ID=Msa1243270;Name=Msa1243270 |
chr8_2 | mRNA | 28813669 | 28815258 | 28813669 | ID=Msa1243270-mRNA-1;Parent=Msa1243270;Name=Msa1243270-mRNA-1;_AED=0.22;_eAED=0.27;_QI=0|0|0|1|0|0|4|0|239 |
chr8_2 | exon | 28813669 | 28813876 | 28813669 | ID=Msa1243270-mRNA-1:exon:9986;Parent=Msa1243270-mRNA-1 |
chr8_2 | exon | 28813886 | 28814104 | 28813886 | ID=Msa1243270-mRNA-1:exon:9987;Parent=Msa1243270-mRNA-1 |
chr8_2 | exon | 28814117 | 28814316 | 28814117 | ID=Msa1243270-mRNA-1:exon:9988;Parent=Msa1243270-mRNA-1 |
chr8_2 | exon | 28815169 | 28815258 | 28815169 | ID=Msa1243270-mRNA-1:exon:9989;Parent=Msa1243270-mRNA-1 |
chr8_2 | CDS | 28813669 | 28813876 | 28813669 | ID=Msa1243270-mRNA-1:cds;Parent=Msa1243270-mRNA-1 |
chr8_2 | CDS | 28813886 | 28814104 | 28813886 | ID=Msa1243270-mRNA-1:cds;Parent=Msa1243270-mRNA-1 |
chr8_2 | CDS | 28814117 | 28814316 | 28814117 | ID=Msa1243270-mRNA-1:cds;Parent=Msa1243270-mRNA-1 |
chr8_2 | CDS | 28815169 | 28815258 | 28815169 | ID=Msa1243270-mRNA-1:cds;Parent=Msa1243270-mRNA-1 |
Gene Sequence |
Protein sequence |