AlfalfaGEDB | Msa1243400

M. sativa cultivar zhongmu-4 / Msa1243400

KEGG: -
GO: GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1243400	XP_039684561.1	90.541	74	7	0	28	101	492	565	5.07e-34	140
Msa1243400	XP_039684561.1	91.558	154	13	0	94	247	643	796	1.70e-90	294

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1243400	sp\|Q8L7G3\|CRK7_ARATH	48.819	127	65	0	94	220	501	627	9.38e-33	128
Msa1243400	sp\|Q8L7G3\|CRK7_ARATH	54.430	79	36	0	28	106	350	428	9.55e-19	88.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1243400	A0A396GMB1	90.541	74	7	0	28	101	492	565	2.42e-34	140
Msa1243400	A0A396GMB1	91.558	154	13	0	94	247	643	796	8.11e-91	294

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1243400	MtrunA17_Chr8g0357711	91.558	154	13	0	94	247	643	796	1.56e-94	294
Msa1243400	MtrunA17_Chr8g0357711	90.541	74	7	0	28	101	492	565	4.67e-38	140
Msa1243400	MtrunA17_Chr8g0357661	88.514	148	17	0	94	241	29	176	1.09e-92	270
Msa1243400	MtrunA17_Chr8g0357761	88.312	154	18	0	94	247	646	799	3.87e-89	280
Msa1243400	MtrunA17_Chr8g0357761	90.541	74	7	0	28	101	495	568	4.22e-38	141
Msa1243400	MtrunA17_Chr8g0357631	87.013	154	20	0	94	247	634	787	1.26e-88	278
Msa1243400	MtrunA17_Chr8g0357631	89.189	74	8	0	28	101	483	556	9.07e-37	137
Msa1243400	MtrunA17_Chr8g0357651	82.468	154	27	0	94	247	636	789	8.54e-83	263
Msa1243400	MtrunA17_Chr8g0357651	87.838	74	9	0	28	101	485	558	1.24e-36	137
Msa1243400	MtrunA17_Chr8g0357831	76.159	151	23	1	94	244	358	495	2.41e-71	226

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1243400	AT4G23280.3	34.498	229	114	4	28	220	358	586	6.19e-34	129
Msa1243400	AT4G23150.1	48.819	127	65	0	94	220	501	627	9.53e-34	128
Msa1243400	AT4G23150.1	54.430	79	36	0	28	106	350	428	9.71e-20	88.6
Msa1243400	AT4G11470.2	44.828	145	78	2	94	236	509	653	1.17e-33	128
Msa1243400	AT4G11470.2	53.846	78	36	0	28	105	358	435	2.65e-21	92.8
Msa1243400	AT4G11470.1	44.828	145	78	2	94	236	504	648	1.43e-33	128
Msa1243400	AT4G11470.1	53.846	78	36	0	28	105	353	430	2.99e-21	92.8
Msa1243400	AT4G11480.1	45.517	145	77	2	94	236	494	638	1.58e-33	128
Msa1243400	AT4G11480.1	57.534	73	31	0	28	100	335	407	1.20e-21	94.0
Msa1243400	AT4G11480.3	45.517	145	77	2	94	236	489	633	1.62e-33	128

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Find 41 sgRNAs with CRISPR-Local

Find 495 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCTGATGTGTACAGCTT+TGG	0.463002	8_2:+29525350	Msa1243400:CDS
AAGTGGATATGGATTTCCGT+CGG	0.666224	8_2:+29517881	None:intergenic
ACAGCTACTTCTTGTCCTGA+AGG	0.558154	8_2:-29524571	None:intergenic
ACATGTCCAACAAGATTAAG+TGG	0.548275	8_2:-29525434	None:intergenic
AGAAGGTGTAGTTCTTCAGT+TGG	0.552295	8_2:+29525564	Msa1243400:CDS
AGGTGTAGTTCTTCAGTTGG+TGG	0.565700	8_2:+29525567	Msa1243400:CDS
AGTCATTATAGTTCGATGCA+TGG	0.604289	8_2:+29525845	Msa1243400:exon
AGTTAACATTGCTATAACAT+TGG	0.464561	8_2:-29525692	None:intergenic
ATATAAGCCAAACAAAAGCT+TGG	0.517940	8_2:+29524735	Msa1243400:CDS
ATATGGATTTCCGTCGGAAT+GGG	0.435248	8_2:+29517887	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCCTTCTCCGTTTATATAA+AGG	-	chr8_2:29518055-29518074	None:intergenic	30.0%
CAATATCTTGAAGCTTATAG+AGG	+	chr8_2:29518099-29518118	Msa1243400:intron	30.0%
CTTATAGAGGATACTGTAAT+GGG	+	chr8_2:29518112-29518131	Msa1243400:intron	30.0%
TTATAGAGGATACTGTAATG+GGG	+	chr8_2:29518113-29518132	Msa1243400:intron	30.0%
TAGCTATTCATCGATAATTG+TGG	+	chr8_2:29518182-29518201	Msa1243400:intron	30.0%
CTAACTTGGTTTCAAAAGAA+AGG	-	chr8_2:29518218-29518237	None:intergenic	30.0%
AGTTGAGATTATTCAGTCAT+CGG	+	chr8_2:29518314-29518333	Msa1243400:intron	30.0%
CTTCGGTAGATAATAGAATT+TGG	-	chr8_2:29518414-29518433	None:intergenic	30.0%
GAGAATTACACCTTCAAATA+TGG	+	chr8_2:29518592-29518611	Msa1243400:intron	30.0%
AAGATCATTCATAATTCCGA+CGG	+	chr8_2:29518823-29518842	Msa1243400:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	29517889	29525902	29517889	ID=Msa1243400;Name=Msa1243400
chr8_2	mRNA	29517889	29525902	29517889	ID=Msa1243400-mRNA-1;Parent=Msa1243400;Name=Msa1243400-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0\|0.33\|0.25\|0.75\|1\|1\|4\|47\|247
chr8_2	exon	29517889	29517979	29517889	ID=Msa1243400-mRNA-1:exon:10024;Parent=Msa1243400-mRNA-1
chr8_2	exon	29524563	29524772	29524563	ID=Msa1243400-mRNA-1:exon:10025;Parent=Msa1243400-mRNA-1
chr8_2	exon	29525321	29525454	29525321	ID=Msa1243400-mRNA-1:exon:10026;Parent=Msa1243400-mRNA-1
chr8_2	exon	29525547	29525902	29525547	ID=Msa1243400-mRNA-1:exon:10027;Parent=Msa1243400-mRNA-1
chr8_2	CDS	29517889	29517979	29517889	ID=Msa1243400-mRNA-1:cds;Parent=Msa1243400-mRNA-1
chr8_2	CDS	29524563	29524772	29524563	ID=Msa1243400-mRNA-1:cds;Parent=Msa1243400-mRNA-1
chr8_2	CDS	29525321	29525454	29525321	ID=Msa1243400-mRNA-1:cds;Parent=Msa1243400-mRNA-1
chr8_2	CDS	29525547	29525855	29525547	ID=Msa1243400-mRNA-1:cds;Parent=Msa1243400-mRNA-1
chr8_2	three_prime_UTR	29525856	29525902	29525856	ID=Msa1243400-mRNA-1:three_prime_utr;Parent=Msa1243400-mRNA-1

Gene Sequence

>Msa1243400

ATGGATTTCCGTCGGAATGGGGACTGTTCAACTCGTTATTGGTCTTTCCATTCTGTTTCGAGCCTTAAGGAACGAAAATATGTGCTTCAAGGAATTCTACCTTCAGGACAAGAAGTAGCTGTGAAGAAACTTTCAAAAACTTCAGGACAAGGAATGACCGAGTTTAGAAATGAATTAACACTCATTTGTAAGCTTCAGCATACAAATCTTGTTCGTCTAATCAGACATTGCATTCATGAACAAGAGCGGATATTGATCTATGAATATAAGCCAAACAAAAGCTTGGGCTTCTTTTTATTTGAGTATGCAATGGAAGGAGTTTTTTCTGCAAAATCTGATGTGTACAGCTTTGGAGTCCTGCTCCTAGAAATTATTAGTGGTGAAAAATGCAATAGCATGTACTGTGAAGACAGACCACTTAATCTTGTTGGACATGCATGTGAGCTATGGAAAGAAGGTGTAGTTCTTCAGTTGGTGGATCCGTTACTAAATGAAATATTTTCTGAGGATGAGGTGCTAAGATGTGTTCATGCTGGTTTATTATGCGTAGAAGAAAATGCAGATGATCGCCCCACCATGTCCAATGTTATAGCAATGTTAACTAACAAAATTAAAGTGGATGTTTTTCCTAAGAAACCAGCATACTATGGTAGAACAAGAGTTTTTGATGAAGAAACGTATGGTGAAGAAGTTGGTGTGGATTCCACACATGAAAACTCTCAGTCACACGTACAGTCATTATAG

Protein sequence

>Msa1243400

MDFRRNGDCSTRYWSFHSVSSLKERKYVLQGILPSGQEVAVKKLSKTSGQGMTEFRNELTLICKLQHTNLVRLIRHCIHEQERILIYEYKPNKSLGFFLFEYAMEGVFSAKSDVYSFGVLLLEIISGEKCNSMYCEDRPLNLVGHACELWKEGVVLQLVDPLLNEIFSEDEVLRCVHAGLLCVEENADDRPTMSNVIAMLTNKIKVDVFPKKPAYYGRTRVFDEETYGEEVGVDSTHENSQSHVQSL*