AlfalfaGEDB | Msa1244210

M. sativa cultivar zhongmu-4 / Msa1244210

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1244210	XP_013445477.2	91.024	713	20	5	1	669	1	713	0.0	1310

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1244210	sp\|Q56XZ1\|SHB_ARATH	44.944	712	300	15	1	668	1	664	0.0	550

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1244210	A0A396GKW5	91.024	713	20	5	1	669	1	713	0.0	1310

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa1244210	TF	STAT

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1244210	MtrunA17_Chr8g0359041	91.024	713	20	5	1	669	1	713	0.0	1310

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1244210	AT1G78540.1	44.944	712	300	15	1	668	1	664	0.0	550
Msa1244210	AT1G78540.2	45.007	711	299	15	1	667	1	663	0.0	549
Msa1244210	AT1G17040.1	44.258	714	277	13	1	669	1	638	0.0	545
Msa1244210	AT1G17040.2	43.785	724	276	14	1	669	1	648	0.0	537
Msa1244210	AT1G78540.3	43.924	683	291	15	1	639	1	635	6.03e-174	511
Msa1244210	AT1G17040.3	43.275	684	267	13	1	639	1	608	4.78e-173	507

Showing 1 to 6 of 6 entries

Previous1Next

Find 184 sgRNAs with CRISPR-Local

Find 924 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAATCCACTGATGAAG+AGG	0.537018	8_2:-31905481	Msa1244210:CDS
AAACCTCTTCATCAGTGGAT+TGG	0.463347	8_2:+31905478	None:intergenic
AAAGGATAATCTCCTAATTT+TGG	0.151104	8_2:+31905674	None:intergenic
AAATTCACCTTCAAATAGCA+TGG	0.570364	8_2:-31903224	Msa1244210:CDS
AACCCCACCATAAAGCAATC+TGG	0.505462	8_2:-31905416	Msa1244210:CDS
AACGAGAAAAGGAGCACTTT+CGG	0.410857	8_2:+31909370	None:intergenic
AAGAAGAAAGTGATGGTGTT+TGG	0.389600	8_2:-31908119	Msa1244210:CDS
AAGAATGGTGGTAGGGAATG+TGG	0.550704	8_2:+31910751	None:intergenic
AAGTAGAAGATATCAAATAT+CGG	0.473248	8_2:-31903200	Msa1244210:CDS
AATCTTTGTGGAGACAGTAG+TGG	0.646760	8_2:-31908401	Msa1244210:CDS

Showing 1 to 10 of 184 entries

Previous1 2 3 4 5…19Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATGAAATGAGAAGAAACGAA+GGG	-	chr8_2:31898223-31898242	Msa1244210:intron	30.0%
ATGATTAACCTGATGAAGAA+TGG	+	chr8_2:31898352-31898371	None:intergenic	30.0%
ACTTGAGAACAATGTATGAA+TGG	+	chr8_2:31898688-31898707	None:intergenic	30.0%
ATAGAGACTTGGGTATTATA+AGG	-	chr8_2:31898958-31898977	Msa1244210:intron	30.0%
CCCTTAAAATCTAGCTATAA+TGG	+	chr8_2:31899057-31899076	None:intergenic	30.0%
AAACATGCAAACAGAAAAAG+GGG	+	chr8_2:31899298-31899317	None:intergenic	30.0%
AGTATACCAATTTAGCATTG+TGG	-	chr8_2:31899523-31899542	Msa1244210:CDS	30.0%
AGTAAACCACAATGCTAAAT+TGG	+	chr8_2:31899532-31899551	None:intergenic	30.0%
ATTTAGCATTGTGGTTTACT+TGG	-	chr8_2:31899532-31899551	Msa1244210:CDS	30.0%
TCTTCATGTAAGTAAAGAAC+TGG	+	chr8_2:31899771-31899790	None:intergenic	30.0%

Showing 1 to 10 of 924 entries

Previous1 2 3 4 5…93Next

Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	31898055	31911052	31898055	ID=Msa1244210;Name=Msa1244210
chr8_2	mRNA	31898055	31911052	31898055	ID=Msa1244210-mRNA-1;Parent=Msa1244210;Name=Msa1244210-mRNA-1;_AED=0.15;_eAED=0.15;_QI=158\|0.61\|0.5\|0.92\|0.61\|0.57\|14\|0\|669
chr8_2	exon	31898055	31898061	31898055	ID=Msa1244210-mRNA-1:exon:10526;Parent=Msa1244210-mRNA-1
chr8_2	exon	31898443	31898520	31898443	ID=Msa1244210-mRNA-1:exon:10525;Parent=Msa1244210-mRNA-1
chr8_2	exon	31899354	31899596	31899354	ID=Msa1244210-mRNA-1:exon:10524;Parent=Msa1244210-mRNA-1
chr8_2	exon	31899612	31899703	31899612	ID=Msa1244210-mRNA-1:exon:10523;Parent=Msa1244210-mRNA-1
chr8_2	exon	31900419	31900524	31900419	ID=Msa1244210-mRNA-1:exon:10522;Parent=Msa1244210-mRNA-1
chr8_2	exon	31903103	31903344	31903103	ID=Msa1244210-mRNA-1:exon:10521;Parent=Msa1244210-mRNA-1
chr8_2	exon	31905376	31905594	31905376	ID=Msa1244210-mRNA-1:exon:10520;Parent=Msa1244210-mRNA-1
chr8_2	exon	31905607	31905744	31905607	ID=Msa1244210-mRNA-1:exon:10519;Parent=Msa1244210-mRNA-1
chr8_2	exon	31907267	31907431	31907267	ID=Msa1244210-mRNA-1:exon:10518;Parent=Msa1244210-mRNA-1
chr8_2	exon	31907535	31907612	31907535	ID=Msa1244210-mRNA-1:exon:10517;Parent=Msa1244210-mRNA-1
chr8_2	exon	31908101	31908190	31908101	ID=Msa1244210-mRNA-1:exon:10516;Parent=Msa1244210-mRNA-1
chr8_2	exon	31908331	31908540	31908331	ID=Msa1244210-mRNA-1:exon:10515;Parent=Msa1244210-mRNA-1
chr8_2	exon	31909220	31909408	31909220	ID=Msa1244210-mRNA-1:exon:10514;Parent=Msa1244210-mRNA-1
chr8_2	exon	31910745	31911052	31910745	ID=Msa1244210-mRNA-1:exon:10513;Parent=Msa1244210-mRNA-1
chr8_2	five_prime_UTR	31910895	31911052	31910895	ID=Msa1244210-mRNA-1:five_prime_utr;Parent=Msa1244210-mRNA-1
chr8_2	CDS	31910745	31910894	31910745	ID=Msa1244210-mRNA-1:cds;Parent=Msa1244210-mRNA-1
chr8_2	CDS	31909220	31909408	31909220	ID=Msa1244210-mRNA-1:cds;Parent=Msa1244210-mRNA-1
chr8_2	CDS	31908331	31908540	31908331	ID=Msa1244210-mRNA-1:cds;Parent=Msa1244210-mRNA-1
chr8_2	CDS	31908101	31908190	31908101	ID=Msa1244210-mRNA-1:cds;Parent=Msa1244210-mRNA-1
chr8_2	CDS	31907535	31907612	31907535	ID=Msa1244210-mRNA-1:cds;Parent=Msa1244210-mRNA-1
chr8_2	CDS	31907267	31907431	31907267	ID=Msa1244210-mRNA-1:cds;Parent=Msa1244210-mRNA-1
chr8_2	CDS	31905607	31905744	31905607	ID=Msa1244210-mRNA-1:cds;Parent=Msa1244210-mRNA-1
chr8_2	CDS	31905376	31905594	31905376	ID=Msa1244210-mRNA-1:cds;Parent=Msa1244210-mRNA-1
chr8_2	CDS	31903103	31903344	31903103	ID=Msa1244210-mRNA-1:cds;Parent=Msa1244210-mRNA-1
chr8_2	CDS	31900419	31900524	31900419	ID=Msa1244210-mRNA-1:cds;Parent=Msa1244210-mRNA-1
chr8_2	CDS	31899612	31899703	31899612	ID=Msa1244210-mRNA-1:cds;Parent=Msa1244210-mRNA-1
chr8_2	CDS	31899354	31899596	31899354	ID=Msa1244210-mRNA-1:cds;Parent=Msa1244210-mRNA-1
chr8_2	CDS	31898443	31898520	31898443	ID=Msa1244210-mRNA-1:cds;Parent=Msa1244210-mRNA-1
chr8_2	CDS	31898055	31898061	31898055	ID=Msa1244210-mRNA-1:cds;Parent=Msa1244210-mRNA-1

Gene Sequence

>Msa1244210

ATGGGTAATGATGAAATGAGAAGAAACGAAGGGTACTGTAAGCTGAAAGATTTATGTTTGGATTTTGTTGAATATGATGGAACTTTCTCTTTCTGCTTTTGGATTTATCTCACTAAATCAACCACATTCCCTACCACCATTCTTCATCAGATTCACTCTGACATTTCCGAAAGTGCTCCTTTTCTCGTTATCAACAATAATAAGAGAATCAATGTTTTGCCAGTTCTTTACTTACATGAAGAAGCTCCTGTTACTTGCATGGGTCCTTGGACAGAAGTTCCACATGTTACTGTTGATTTTGAGTTTCCTTTGGAAAAATGGGTTCATGTTGGATGTGAGGTTTGTCCAAATTATATTCGGCTTCACATTAATGGGGAGATTGTAGGAGAAAAGTCACTGTCTTCCTTGTTACATAAGGAATCCAATTCAAGTAATTTGAAGGAAATACATTTGGCCAATCTTTGTGGAGACAGTAGTGGTGTGCAGGGTTACGTGCACAATTATGAAGGATTCCATACCGTTTCTTCTATCAAAGATCATCATTTAAAGGACCCTCCTCTGAAGTTATCAATAGATGAATCATCCATCTCTGAGGTTGAAGAAGAAAGTGATGGTGTTTGGGGCATTGTTGGTGGTAAAGCATCTTGTCGCAGGAATGTCTCTTTAGACGTTGTTTTATCAGATGCATTTGGACAGCCTGTTGATATGGAGAATGAGGTTTTTGCTTCACTTGTGTATGCTGACACGGGGGCTCCAGTCGAGAATACAACTGATGACGAAGCACCCCTTTTGTCTAGCTATGATGGAATTGAATTTTCTTCTTGTGAAAGGCCTAGTAAATTTTTGTTGGGTCGTGCATCATTTAAGCTCAGGATATCTCAGCTTTCATCCAAGTGTGATAGCAGGTTGTTCCTCATCAGATTTTGTGTTCCAAAATTAGGAGATTATCCTTTCCTTCAGACAAACACCCGTCCGATTCGATGCATCTCCAGGAGCCGTAACACAAAATTATCCACGCTGTCAACTTATGCTCTTGAAAGACTCAATTTGTCCCAATCTTCAGCAATTGATGATGTGTCATTGGAAAGTATGAATTCTGGTCACGAAGAAAAAACCAATCCACTGATGAAGAGGTTTAGAGTTGGACTTGACAAGATATCTGTATCAGTTAAGGCCAACCCCACCATAAAGCAATCTGGTGTAGAATGTAATAATTCTCAGGTATGGACTGCTAATCAGGTTGAGAATGGGTTTCCAAAAAGCTTGGATGGCCGATCTCTTAACTTTGAAGAAGCAGACGTCTCTCCATCTGAATCATCAGAGAGTACAGGGGAGAGAAATTCACCTTCAAATAGCATGGAAAGTAGAAGATATCAAATATCGGATATGACCATTTTCAAATACTGTCTGGCAGGCTTGGCTGAGAGATCTCAAATGCTTAAAGAAATTGCCATCTCTGCTTCAGACAAAGAAATTTCAGAAAACCAAATATTAATTTCCAAGAGATTGATAGAAGATGGAACTAATCTTTGGCTGGCAATGTCTCCAAACAACCACCCCATTCCTTGGAAGAGCGCAGTGTATGAGGACCTTGAGATTCTAAGAAGCATTGCGGGATGTCAAGAGTATCTATCACTAGAGAACTTTGAGAAGTTATGGTGCTGGTTGTACCCTGTAGCGGACTGGGTAAATGCTATCTGGAATTCCATGTCACCTAAATGGATTGAAGGATTCATCACCAAGGAGGAGGCAGAAGCTTCACTTCAAGGTCCAGGAGGATTTCAAGAACGTGGTACTTTTATACTTCGGTTCCCCACCTCAAGAAGCTGGCCCCACCCAGATGCCGGTTGCCTAATTGTTACATATGTTGGGAATGACTACAAACTTCGCCACAAACTACTTTCAATGGATCATATATACGGCTCTGATAATCAAAGAATAGATGTAAAACCATTGCAAGATATGCTACTGGCAGAACCTGAGCTGTCCCGTTTGGGAAGGGTAATA

Protein sequence

>Msa1244210

MGNDEMRRNEGYCKLKDLCLDFVEYDGTFSFCFWIYLTKSTTFPTTILHQIHSDISESAPFLVINNNKRINVLPVLYLHEEAPVTCMGPWTEVPHVTVDFEFPLEKWVHVGCEVCPNYIRLHINGEIVGEKSLSSLLHKESNSSNLKEIHLANLCGDSSGVQGYVHNYEGFHTVSSIKDHHLKDPPLKLSIDESSISEVEEESDGVWGIVGGKASCRRNVSLDVVLSDAFGQPVDMENEVFASLVYADTGAPVENTTDDEAPLLSSYDGIEFSSCERPSKFLLGRASFKLRISQLSSKCDSRLFLIRFCVPKLGDYPFLQTNTRPIRCISRSRNTKLSTLSTYALERLNLSQSSAIDDVSLESMNSGHEEKTNPLMKRFRVGLDKISVSVKANPTIKQSGVECNNSQVWTANQVENGFPKSLDGRSLNFEEADVSPSESSESTGERNSPSNSMESRRYQISDMTIFKYCLAGLAERSQMLKEIAISASDKEISENQILISKRLIEDGTNLWLAMSPNNHPIPWKSAVYEDLEILRSIAGCQEYLSLENFEKLWCWLYPVADWVNAIWNSMSPKWIEGFITKEEAEASLQGPGGFQERGTFILRFPTSRSWPHPDAGCLIVTYVGNDYKLRHKLLSMDHIYGSDNQRIDVKPLQDMLLAEPELSRLGRVI