Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1247440 | XP_013445749.1 | 100.000 | 282 | 0 | 0 | 1 | 282 | 1 | 282 | 0.0 | 586 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1247440 | sp|Q8LC03|ATB13_ARATH | 64.189 | 296 | 84 | 8 | 1 | 282 | 7 | 294 | 8.44e-119 | 345 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1247440 | A0A072U1W4 | 100.000 | 282 | 0 | 0 | 1 | 282 | 1 | 282 | 0.0 | 586 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1247440 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1247440 | MtrunA17_Chr8g0362151 | 100.000 | 282 | 0 | 0 | 1 | 282 | 1 | 282 | 0.0 | 586 |
| Msa1247440 | MtrunA17_Chr5g0416391 | 81.818 | 286 | 42 | 6 | 1 | 282 | 4 | 283 | 1.33e-150 | 422 |
| Msa1247440 | MtrunA17_Chr6g0453021 | 50.498 | 301 | 98 | 10 | 1 | 279 | 1 | 272 | 1.69e-84 | 254 |
| Msa1247440 | MtrunA17_Chr7g0217111 | 52.465 | 284 | 113 | 9 | 1 | 275 | 1 | 271 | 3.95e-82 | 248 |
| Msa1247440 | MtrunA17_Chr3g0123691 | 51.656 | 151 | 60 | 4 | 33 | 180 | 26 | 166 | 3.66e-39 | 139 |
| Msa1247440 | MtrunA17_Chr6g0450991 | 64.948 | 97 | 34 | 0 | 76 | 172 | 66 | 162 | 6.53e-39 | 137 |
| Msa1247440 | MtrunA17_Chr3g0119291 | 49.689 | 161 | 62 | 3 | 64 | 213 | 46 | 198 | 1.03e-37 | 134 |
| Msa1247440 | MtrunA17_Chr5g0415941 | 66.667 | 96 | 32 | 0 | 77 | 172 | 87 | 182 | 4.74e-37 | 134 |
| Msa1247440 | MtrunA17_Chr4g0060031 | 58.475 | 118 | 46 | 2 | 52 | 169 | 73 | 187 | 9.47e-37 | 133 |
| Msa1247440 | MtrunA17_Chr8g0381741 | 62.245 | 98 | 37 | 0 | 75 | 172 | 52 | 149 | 2.19e-36 | 132 |
| Msa1247440 | MtrunA17_Chr8g0362751 | 65.625 | 96 | 33 | 0 | 77 | 172 | 89 | 184 | 3.70e-36 | 130 |
| Msa1247440 | MtrunA17_Chr7g0265521 | 45.652 | 138 | 59 | 2 | 44 | 172 | 21 | 151 | 5.79e-33 | 120 |
| Msa1247440 | MtrunA17_Chr1g0179581 | 56.522 | 92 | 38 | 1 | 65 | 156 | 18 | 107 | 1.03e-27 | 103 |
| Msa1247440 | MtrunA17_Chr3g0127511 | 53.846 | 91 | 42 | 0 | 79 | 169 | 40 | 130 | 3.88e-27 | 105 |
| Msa1247440 | MtrunA17_Chr8g0346251 | 38.000 | 150 | 82 | 3 | 84 | 222 | 48 | 197 | 4.85e-25 | 100 |
| Msa1247440 | MtrunA17_Chr4g0055851 | 40.496 | 121 | 69 | 1 | 43 | 163 | 89 | 206 | 5.94e-21 | 90.1 |
| Msa1247440 | MtrunA17_Chr5g0403691 | 46.809 | 94 | 50 | 0 | 77 | 170 | 53 | 146 | 2.30e-19 | 84.3 |
| Msa1247440 | MtrunA17_Chr5g0403701 | 47.778 | 90 | 47 | 0 | 77 | 166 | 53 | 142 | 2.34e-19 | 84.0 |
| Msa1247440 | MtrunA17_Chr5g0399491 | 41.463 | 123 | 70 | 2 | 43 | 163 | 100 | 222 | 7.10e-19 | 84.3 |
| Msa1247440 | MtrunA17_Chr4g0054421 | 45.263 | 95 | 52 | 0 | 69 | 163 | 119 | 213 | 8.27e-19 | 84.0 |
| Msa1247440 | MtrunA17_Chr7g0258831 | 46.939 | 98 | 48 | 1 | 77 | 174 | 160 | 253 | 3.29e-18 | 82.8 |
| Msa1247440 | MtrunA17_Chr5g0400781 | 44.000 | 100 | 56 | 0 | 69 | 168 | 115 | 214 | 3.74e-18 | 82.0 |
| Msa1247440 | MtrunA17_Chr1g0175651 | 42.609 | 115 | 62 | 1 | 60 | 174 | 137 | 247 | 4.34e-18 | 82.4 |
| Msa1247440 | MtrunA17_Chr2g0308611 | 39.669 | 121 | 69 | 1 | 54 | 174 | 177 | 293 | 1.64e-17 | 81.3 |
| Msa1247440 | MtrunA17_Chr8g0335131 | 46.739 | 92 | 49 | 0 | 77 | 168 | 146 | 237 | 2.28e-17 | 80.5 |
| Msa1247440 | MtrunA17_Chr4g0071411 | 45.882 | 85 | 46 | 0 | 80 | 164 | 91 | 175 | 6.05e-17 | 77.8 |
| Msa1247440 | MtrunA17_Chr1g0151971 | 45.455 | 88 | 48 | 0 | 77 | 164 | 130 | 217 | 1.11e-16 | 78.2 |
| Msa1247440 | MtrunA17_Chr4g0044091 | 43.434 | 99 | 52 | 1 | 77 | 175 | 65 | 159 | 2.40e-15 | 72.8 |
| Msa1247440 | MtrunA17_Chr3g0135331 | 48.611 | 72 | 37 | 0 | 77 | 148 | 145 | 216 | 4.26e-14 | 71.2 |
| Msa1247440 | MtrunA17_Chr2g0299031 | 37.615 | 109 | 64 | 2 | 59 | 163 | 60 | 168 | 9.34e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1247440 | AT1G69780.1 | 64.189 | 296 | 84 | 8 | 1 | 282 | 7 | 294 | 8.58e-120 | 345 |
| Msa1247440 | AT1G26960.1 | 55.363 | 289 | 81 | 9 | 1 | 282 | 8 | 255 | 5.23e-95 | 281 |
| Msa1247440 | AT3G01220.1 | 48.057 | 283 | 114 | 9 | 1 | 275 | 16 | 273 | 1.07e-74 | 230 |
| Msa1247440 | AT5G15150.1 | 44.300 | 307 | 111 | 11 | 1 | 275 | 22 | 300 | 1.47e-71 | 223 |
| Msa1247440 | AT4G40060.1 | 57.576 | 132 | 52 | 2 | 59 | 186 | 39 | 170 | 4.71e-40 | 141 |
| Msa1247440 | AT5G65310.2 | 48.824 | 170 | 70 | 4 | 52 | 206 | 19 | 186 | 7.52e-40 | 140 |
| Msa1247440 | AT5G65310.1 | 48.824 | 170 | 70 | 4 | 52 | 206 | 37 | 204 | 8.71e-40 | 141 |
| Msa1247440 | AT3G01470.1 | 48.052 | 154 | 65 | 1 | 34 | 172 | 10 | 163 | 6.06e-39 | 137 |
| Msa1247440 | AT2G22430.1 | 66.667 | 99 | 33 | 0 | 74 | 172 | 59 | 157 | 8.64e-39 | 138 |
| Msa1247440 | AT1G27045.1 | 40.306 | 196 | 94 | 5 | 8 | 195 | 12 | 192 | 2.63e-31 | 116 |
| Msa1247440 | AT1G27045.4 | 42.857 | 161 | 75 | 4 | 8 | 166 | 12 | 157 | 1.64e-29 | 112 |
| Msa1247440 | AT1G27045.2 | 48.800 | 125 | 58 | 1 | 77 | 195 | 17 | 141 | 4.02e-28 | 107 |
| Msa1247440 | AT1G27045.5 | 48.800 | 125 | 58 | 1 | 77 | 195 | 25 | 149 | 4.60e-28 | 107 |
| Msa1247440 | AT1G27045.3 | 48.800 | 125 | 58 | 1 | 77 | 195 | 25 | 149 | 4.60e-28 | 107 |
| Msa1247440 | AT2G46680.1 | 52.688 | 93 | 44 | 0 | 78 | 170 | 33 | 125 | 8.27e-28 | 108 |
| Msa1247440 | AT2G46680.2 | 53.333 | 90 | 42 | 0 | 78 | 167 | 33 | 122 | 4.57e-27 | 106 |
| Msa1247440 | AT3G61890.1 | 51.111 | 90 | 44 | 0 | 80 | 169 | 33 | 122 | 1.28e-25 | 102 |
| Msa1247440 | AT5G03790.1 | 52.273 | 88 | 42 | 0 | 77 | 164 | 77 | 164 | 1.58e-24 | 99.0 |
| Msa1247440 | AT5G03790.2 | 55.000 | 80 | 36 | 0 | 77 | 156 | 77 | 156 | 1.49e-23 | 95.5 |
| Msa1247440 | AT2G18550.1 | 46.341 | 123 | 56 | 3 | 77 | 196 | 61 | 176 | 1.65e-22 | 93.2 |
| Msa1247440 | AT2G36610.1 | 43.590 | 117 | 51 | 3 | 58 | 166 | 59 | 168 | 1.95e-22 | 92.0 |
| Msa1247440 | AT4G36740.1 | 48.544 | 103 | 46 | 1 | 68 | 170 | 46 | 141 | 6.98e-22 | 91.3 |
| Msa1247440 | AT4G36740.2 | 48.544 | 103 | 46 | 1 | 68 | 170 | 47 | 142 | 7.50e-22 | 91.3 |
| Msa1247440 | AT5G66700.1 | 45.378 | 119 | 56 | 2 | 61 | 172 | 57 | 173 | 3.41e-21 | 89.7 |
| Msa1247440 | AT5G53980.1 | 44.554 | 101 | 56 | 0 | 72 | 172 | 6 | 106 | 1.04e-20 | 86.7 |
| Msa1247440 | AT2G01430.1 | 43.396 | 106 | 60 | 0 | 58 | 163 | 120 | 225 | 5.02e-18 | 82.0 |
| Msa1247440 | AT5G47370.1 | 42.708 | 96 | 55 | 0 | 69 | 164 | 122 | 217 | 2.26e-17 | 80.5 |
| Msa1247440 | AT4G37790.1 | 41.228 | 114 | 63 | 1 | 61 | 174 | 110 | 219 | 3.87e-17 | 79.7 |
| Msa1247440 | AT2G22800.1 | 46.667 | 90 | 48 | 0 | 75 | 164 | 111 | 200 | 4.95e-17 | 79.3 |
| Msa1247440 | AT5G06710.1 | 43.434 | 99 | 56 | 0 | 66 | 164 | 179 | 277 | 8.23e-17 | 79.7 |
| Msa1247440 | AT4G17460.1 | 41.414 | 99 | 58 | 0 | 65 | 163 | 123 | 221 | 1.18e-16 | 78.6 |
| Msa1247440 | AT3G60390.1 | 42.991 | 107 | 57 | 1 | 64 | 170 | 149 | 251 | 1.62e-16 | 78.6 |
| Msa1247440 | AT2G44910.1 | 44.681 | 94 | 48 | 1 | 77 | 170 | 163 | 252 | 5.28e-15 | 74.3 |
| Msa1247440 | AT4G16780.1 | 42.157 | 102 | 55 | 1 | 69 | 170 | 121 | 218 | 8.91e-15 | 73.2 |
| Msa1247440 | AT1G70920.1 | 37.903 | 124 | 69 | 2 | 57 | 180 | 50 | 165 | 9.54e-15 | 71.6 |
| Msa1247440 | AT1G70920.2 | 37.903 | 124 | 69 | 2 | 57 | 180 | 20 | 135 | 1.71e-14 | 70.5 |
| Msa1247440 | AT2G01430.2 | 50.704 | 71 | 35 | 0 | 59 | 129 | 121 | 191 | 2.56e-13 | 67.8 |
Find 69 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCTTCTGTTTCTTTATTA+AGG | 0.139873 | 8_2:+40393975 | None:intergenic |
| GATTGCATGCAATTATTTAA+TGG | 0.196144 | 8_2:-40393206 | Msa1247440:three_prime_UTR |
| CATAGATCTCTTTCCTAAAA+AGG | 0.254932 | 8_2:+40395015 | None:intergenic |
| TCAATTAATTGATCAAATAA+AGG | 0.264717 | 8_2:-40393670 | Msa1247440:exon |
| TTGATCTCTTGGTGCAAGTT+TGG | 0.281269 | 8_2:+40395448 | None:intergenic |
| CTGAATGTCTTGTCTTGAAT+TGG | 0.288821 | 8_2:+40393796 | None:intergenic |
| TTGCAACTTTACATATAATA+AGG | 0.291015 | 8_2:-40395720 | Msa1247440:five_prime_UTR |
| CAATTTAGCATAAGATGTTT+TGG | 0.293701 | 8_2:-40395529 | Msa1247440:five_prime_UTR |
| TGAAATCAAAAGTGCATGTT+TGG | 0.326942 | 8_2:-40393606 | Msa1247440:three_prime_UTR |
| ATGAATATTTCAAAAGGAAA+TGG | 0.340422 | 8_2:+40395589 | None:intergenic |
| GGATTTGAGTAAAGAACTAT+TGG | 0.342549 | 8_2:-40395402 | Msa1247440:five_prime_UTR |
| AAGACAATATGATACTATTA+AGG | 0.363112 | 8_2:-40394717 | Msa1247440:CDS |
| GTTTGTAGCATGAAATTTGC+TGG | 0.365160 | 8_2:+40395348 | None:intergenic |
| AGCCAAGACAGATTGCTATA+TGG | 0.381746 | 8_2:-40394802 | Msa1247440:CDS |
| TCCGATGATGGATCACAGTT+AGG | 0.383385 | 8_2:-40394941 | Msa1247440:CDS |
| GTCTTGAAGAAGATGGAAAT+AGG | 0.399749 | 8_2:+40393849 | None:intergenic |
| CAATTAATTGATCAAATAAA+GGG | 0.400147 | 8_2:-40393669 | Msa1247440:exon |
| AATCTCTTCCTTTATTTCTG+TGG | 0.403872 | 8_2:+40393182 | None:intergenic |
| AGCATTTGACAGTGAATGTT+CGG | 0.411555 | 8_2:+40393465 | None:intergenic |
| ACAAGAGAAGATTGATCTCT+TGG | 0.413112 | 8_2:+40395437 | None:intergenic |
| ATGCAGTTAGCAAGGGCTCT+TGG | 0.425130 | 8_2:-40394830 | Msa1247440:CDS |
| TAAACTTTGATGTATAGAAT+AGG | 0.433223 | 8_2:-40393419 | Msa1247440:three_prime_UTR |
| TTTCAAAAGGAAATGGAACT+TGG | 0.436762 | 8_2:+40395596 | None:intergenic |
| ATCTCTTCCTTTATTTCTGT+GGG | 0.438371 | 8_2:+40393183 | None:intergenic |
| TGGATGATCAATCTGGACTA+TGG | 0.444127 | 8_2:-40393715 | Msa1247440:CDS |
| TATTATATGAATATTTCAAA+AGG | 0.449123 | 8_2:+40395583 | None:intergenic |
| CCATCTTCTTCAAGACCAGC+AGG | 0.460199 | 8_2:-40393842 | Msa1247440:CDS |
| CCGATGATGGATCACAGTTA+GGG | 0.466027 | 8_2:-40394940 | Msa1247440:CDS |
| CTTGTCTGTTGAGTAGATAA+AGG | 0.476490 | 8_2:+40393878 | None:intergenic |
| GTTTCGATAGTAATAGATCA+TGG | 0.478644 | 8_2:-40393272 | Msa1247440:three_prime_UTR |
| TTCTCTTGTTATTCAACATG+TGG | 0.480787 | 8_2:-40395423 | Msa1247440:five_prime_UTR |
| AGCTGATGAGGAACTCCTGC+TGG | 0.491266 | 8_2:+40393827 | None:intergenic |
| AAATATTTGATAGTACTAGT+TGG | 0.492736 | 8_2:-40393234 | Msa1247440:three_prime_UTR |
| TGTGCCATGGATGATCAATC+TGG | 0.494499 | 8_2:-40393722 | Msa1247440:CDS |
| CTATATGGTTTCAAAACAGA+AGG | 0.506981 | 8_2:-40394787 | Msa1247440:CDS |
| ATAATTGAGTTGAGTGAAGG+TGG | 0.507171 | 8_2:+40395297 | None:intergenic |
| CCTGCTGGTCTTGAAGAAGA+TGG | 0.521993 | 8_2:+40393842 | None:intergenic |
| ATCTGGACTATGGCCATGGT+TGG | 0.522424 | 8_2:-40393705 | Msa1247440:CDS |
| CATCAAAGTTTACCAAAACA+AGG | 0.536310 | 8_2:+40393430 | None:intergenic |
| AACCATATAGCAATCTGTCT+TGG | 0.537294 | 8_2:+40394800 | None:intergenic |
| TTAAGGTTGATTGATTCAGT+TGG | 0.542418 | 8_2:+40393992 | None:intergenic |
| CCCTAACTGTGATCCATCAT+CGG | 0.548112 | 8_2:+40394940 | None:intergenic |
| AGAGGAAAATGCAGTTAGCA+AGG | 0.561609 | 8_2:-40394838 | Msa1247440:CDS |
| GGTTTCAAAACAGAAGGGCT+AGG | 0.568856 | 8_2:-40394781 | Msa1247440:CDS |
| TAGTCCAGATTGATCATCCA+TGG | 0.576768 | 8_2:+40393718 | None:intergenic |
| GAAGAAGAACTATCCGATGA+TGG | 0.588130 | 8_2:-40394953 | Msa1247440:CDS |
| CTTGGAAGAAAACGTTGAGA+GGG | 0.590249 | 8_2:+40395614 | None:intergenic |
| TTGGTTTGAAAGAGCTGATG+AGG | 0.592238 | 8_2:+40393815 | None:intergenic |
| AAACAGTTCAGATATCAAGT+TGG | 0.594453 | 8_2:-40393933 | Msa1247440:CDS |
| AACCTTAATAAAGAAACAGA+AGG | 0.601474 | 8_2:-40393977 | Msa1247440:CDS |
| GTTATAATTGAGTTGAGTGA+AGG | 0.601931 | 8_2:+40395294 | None:intergenic |
| AGTTAGGGGAGAAGAAGAGA+AGG | 0.602528 | 8_2:-40394925 | Msa1247440:CDS |
| CTCTTGGTGCAAGTTTGGAA+TGG | 0.608188 | 8_2:+40395453 | None:intergenic |
| GAAGAAGAGAAGGCTTAACA+TGG | 0.612268 | 8_2:-40394915 | Msa1247440:CDS |
| ATCAATCTGGACTATGGCCA+TGG | 0.615676 | 8_2:-40393709 | Msa1247440:CDS |
| ATTGAGTTGAGTGAAGGTGG+AGG | 0.620969 | 8_2:+40395300 | None:intergenic |
| TATATGGTTTCAAAACAGAA+GGG | 0.626685 | 8_2:-40394786 | Msa1247440:CDS |
| ACTTGGAAGAAAACGTTGAG+AGG | 0.627788 | 8_2:+40395613 | None:intergenic |
| AAGTGCTGTTGCTCCAACCA+TGG | 0.633621 | 8_2:+40393692 | None:intergenic |
| GTAATCTTGAGGAGCACATG+AGG | 0.640517 | 8_2:+40395272 | None:intergenic |
| GAGGAAAATGCAGTTAGCAA+GGG | 0.641074 | 8_2:-40394837 | Msa1247440:CDS |
| AAAGTACCATGGTAATCTTG+AGG | 0.650196 | 8_2:+40395261 | None:intergenic |
| GAAACAAGCTTGAACCTGAG+AGG | 0.652955 | 8_2:-40394856 | Msa1247440:CDS |
| TTGGAAGAAAACGTTGAGAG+GGG | 0.656582 | 8_2:+40395615 | None:intergenic |
| CGATGATGGATCACAGTTAG+GGG | 0.661316 | 8_2:-40394939 | Msa1247440:CDS |
| TTCAAAACAGAAGGGCTAGG+TGG | 0.663747 | 8_2:-40394778 | Msa1247440:CDS |
| TGGAAGAAAACGTTGAGAGG+GGG | 0.668438 | 8_2:+40395616 | None:intergenic |
| TGTGCTCCTCAAGATTACCA+TGG | 0.687683 | 8_2:-40395267 | Msa1247440:intron |
| TCAAGTTGGATATTTCAACA+AGG | 0.737704 | 8_2:-40393919 | Msa1247440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTATATGAATATTTCAAA+AGG | + | chr8_2:40393341-40393360 | None:intergenic | 10.0% |
| !!! | CAATGTAATATTATTTTTTA+TGG | - | chr8_2:40393835-40393854 | Msa1247440:CDS | 10.0% |
| !!! | AATTTCTTTTTATATTCAAA+AGG | + | chr8_2:40394628-40394647 | None:intergenic | 10.0% |
| !! | TTATAAAAGTTATCATTAGT+TGG | + | chr8_2:40394693-40394712 | None:intergenic | 15.0% |
| !!! | TTAATTTTTTTACCAAAATG+AGG | + | chr8_2:40394786-40394805 | None:intergenic | 15.0% |
| !! | TCAATTAATTGATCAAATAA+AGG | - | chr8_2:40395251-40395270 | Msa1247440:intron | 15.0% |
| !! | CAATTAATTGATCAAATAAA+GGG | - | chr8_2:40395252-40395271 | Msa1247440:intron | 15.0% |
| !!! | TATATCAAGCATAATTTTTA+TGG | - | chr8_2:40395528-40395547 | Msa1247440:five_prime_UTR | 15.0% |
| !! | TTGCAACTTTACATATAATA+AGG | - | chr8_2:40393201-40393220 | Msa1247440:three_prime_UTR | 20.0% |
| !! | ATGAATATTTCAAAAGGAAA+TGG | + | chr8_2:40393335-40393354 | None:intergenic | 20.0% |
| !! | ACATTGCTAGATTTAAATAA+AGG | + | chr8_2:40393821-40393840 | None:intergenic | 20.0% |
| !! | AAGACAATATGATACTATTA+AGG | - | chr8_2:40394204-40394223 | Msa1247440:intron | 20.0% |
| !! | AAATTGATGAAAGGAAATAA+AGG | + | chr8_2:40394668-40394687 | None:intergenic | 20.0% |
| !!! | TAAAAAGCTTTTTTTTTGCT+TGG | + | chr8_2:40394844-40394863 | None:intergenic | 20.0% |
| !! | TAAACTTTGATGTATAGAAT+AGG | - | chr8_2:40395502-40395521 | Msa1247440:five_prime_UTR | 20.0% |
| !!! | AAATATTTGATAGTACTAGT+TGG | - | chr8_2:40395687-40395706 | Msa1247440:five_prime_UTR | 20.0% |
| !! | CAATTTAGCATAAGATGTTT+TGG | - | chr8_2:40393392-40393411 | Msa1247440:three_prime_UTR | 25.0% |
| !!! | ATTTTTTGCTTGCAATGATA+TGG | - | chr8_2:40393542-40393561 | Msa1247440:three_prime_UTR | 25.0% |
| !!! | CATAATAGGTTTTAATGTTG+TGG | + | chr8_2:40393773-40393792 | None:intergenic | 25.0% |
| !!! | CATGTTTTAAATATTGATGC+AGG | - | chr8_2:40393872-40393891 | Msa1247440:CDS | 25.0% |
| ! | TATATGGTTTCAAAACAGAA+GGG | - | chr8_2:40394135-40394154 | Msa1247440:intron | 25.0% |
| !!! | CTTTTAGAACAACATTAGAT+TGG | + | chr8_2:40394369-40394388 | None:intergenic | 25.0% |
| !! | AAGAGATGTTCAAGTATTTT+GGG | - | chr8_2:40394508-40394527 | Msa1247440:intron | 25.0% |
| ! | AACCTTAATAAAGAAACAGA+AGG | - | chr8_2:40394944-40394963 | Msa1247440:CDS | 25.0% |
| !! | ATCCTTCTGTTTCTTTATTA+AGG | + | chr8_2:40394949-40394968 | None:intergenic | 25.0% |
| ! | AAAAATTGATCACATGGTTA+AGG | - | chr8_2:40395153-40395172 | Msa1247440:intron | 25.0% |
| !! | AGAAGAAATAGTTTTCAGAT+TGG | - | chr8_2:40395276-40395295 | Msa1247440:CDS | 25.0% |
| !!! | AAAGTTGAAAAACCTTGTTT+TGG | - | chr8_2:40395479-40395498 | Msa1247440:five_prime_UTR | 25.0% |
| !! | AAGCATAATTTTTATGGTTG+AGG | - | chr8_2:40395534-40395553 | Msa1247440:five_prime_UTR | 25.0% |
| ! | GATTGCATGCAATTATTTAA+TGG | - | chr8_2:40395715-40395734 | Msa1247440:five_prime_UTR | 25.0% |
| TTTCAAAAGGAAATGGAACT+TGG | + | chr8_2:40393328-40393347 | None:intergenic | 30.0% | |
| !! | TAGCATAAGATGTTTTGGAT+TGG | - | chr8_2:40393397-40393416 | Msa1247440:three_prime_UTR | 30.0% |
| !! | TTCTCTTGTTATTCAACATG+TGG | - | chr8_2:40393498-40393517 | Msa1247440:three_prime_UTR | 30.0% |
| GGATTTGAGTAAAGAACTAT+TGG | - | chr8_2:40393519-40393538 | Msa1247440:three_prime_UTR | 30.0% | |
| !! | GTTATAATTGAGTTGAGTGA+AGG | + | chr8_2:40393630-40393649 | None:intergenic | 30.0% |
| CATTAAAACCTATTATGTCG+TGG | - | chr8_2:40393776-40393795 | Msa1247440:CDS | 30.0% | |
| !! | GTTTTAAATATTGATGCAGG+AGG | - | chr8_2:40393875-40393894 | Msa1247440:CDS | 30.0% |
| CATAGATCTCTTTCCTAAAA+AGG | + | chr8_2:40393909-40393928 | None:intergenic | 30.0% | |
| !!! | AAGAGATCTATGTCATTTTC+AGG | - | chr8_2:40393917-40393936 | Msa1247440:CDS | 30.0% |
| !!! | AGAGATCTATGTCATTTTCA+GGG | - | chr8_2:40393918-40393937 | Msa1247440:CDS | 30.0% |
| CTATATGGTTTCAAAACAGA+AGG | - | chr8_2:40394134-40394153 | Msa1247440:intron | 30.0% | |
| ! | CAAGAGATGTTCAAGTATTT+TGG | - | chr8_2:40394507-40394526 | Msa1247440:intron | 30.0% |
| !! | TAGTTGGTGAAATTGATGAA+AGG | + | chr8_2:40394677-40394696 | None:intergenic | 30.0% |
| GAAAGTAACTGTGTAATGAT+AGG | + | chr8_2:40394731-40394750 | None:intergenic | 30.0% | |
| AAAGAAAACATGTCATTGAG+TGG | + | chr8_2:40394753-40394772 | None:intergenic | 30.0% | |
| ! | ATGACATGTTTTCTTTTGCA+TGG | - | chr8_2:40394757-40394776 | Msa1247440:CDS | 30.0% |
| ! | TTAAGGTTGATTGATTCAGT+TGG | + | chr8_2:40394932-40394951 | None:intergenic | 30.0% |
| AAACAGTTCAGATATCAAGT+TGG | - | chr8_2:40394988-40395007 | Msa1247440:CDS | 30.0% | |
| !! | TCAAGTTGGATATTTCAACA+AGG | - | chr8_2:40395002-40395021 | Msa1247440:CDS | 30.0% |
| GTGTCAAAAAATTGATCACA+TGG | - | chr8_2:40395147-40395166 | Msa1247440:intron | 30.0% | |
| ! | TGAAATCAAAAGTGCATGTT+TGG | - | chr8_2:40395315-40395334 | Msa1247440:CDS | 30.0% |
| CATCAAAGTTTACCAAAACA+AGG | + | chr8_2:40395494-40395513 | None:intergenic | 30.0% | |
| GTTTCGATAGTAATAGATCA+TGG | - | chr8_2:40395649-40395668 | Msa1247440:five_prime_UTR | 30.0% | |
| ACAAGAGAAGATTGATCTCT+TGG | + | chr8_2:40393487-40393506 | None:intergenic | 35.0% | |
| GTTTGTAGCATGAAATTTGC+TGG | + | chr8_2:40393576-40393595 | None:intergenic | 35.0% | |
| !! | ATAATTGAGTTGAGTGAAGG+TGG | + | chr8_2:40393627-40393646 | None:intergenic | 35.0% |
| ! | AAAGTACCATGGTAATCTTG+AGG | + | chr8_2:40393663-40393682 | None:intergenic | 35.0% |
| !! | TCTAGACAAAGAAAGTACCA+TGG | + | chr8_2:40393674-40393693 | None:intergenic | 35.0% |
| GAACACTCACATAAATATCG+CGG | - | chr8_2:40393692-40393711 | Msa1247440:CDS | 35.0% | |
| TTAAATATTGATGCAGGAGG+AGG | - | chr8_2:40393878-40393897 | Msa1247440:CDS | 35.0% | |
| !! | TCATTTTCAGGGATAGAACT+TGG | - | chr8_2:40393929-40393948 | Msa1247440:CDS | 35.0% |
| !!! | CTTGAGAAGAGTTTTGAGTT+AGG | - | chr8_2:40394043-40394062 | Msa1247440:intron | 35.0% |
| AACCATATAGCAATCTGTCT+TGG | + | chr8_2:40394124-40394143 | None:intergenic | 35.0% | |
| GAATCAAAAACTTCAGACTG+AGG | - | chr8_2:40394252-40394271 | Msa1247440:intron | 35.0% | |
| ! | TTTGCATGGTTTCCTCATTT+TGG | - | chr8_2:40394771-40394790 | Msa1247440:CDS | 35.0% |
| ! | TCAATGCTTGTTGCAGATAT+TGG | - | chr8_2:40394889-40394908 | Msa1247440:CDS | 35.0% |
| CTTGTCTGTTGAGTAGATAA+AGG | + | chr8_2:40395046-40395065 | None:intergenic | 35.0% | |
| GTCTTGAAGAAGATGGAAAT+AGG | + | chr8_2:40395075-40395094 | None:intergenic | 35.0% | |
| CTGAATGTCTTGTCTTGAAT+TGG | + | chr8_2:40395128-40395147 | None:intergenic | 35.0% | |
| AGCATTTGACAGTGAATGTT+CGG | + | chr8_2:40395459-40395478 | None:intergenic | 35.0% | |
| TTGGAAGAAAACGTTGAGAG+GGG | + | chr8_2:40393309-40393328 | None:intergenic | 40.0% | |
| CTTGGAAGAAAACGTTGAGA+GGG | + | chr8_2:40393310-40393329 | None:intergenic | 40.0% | |
| ACTTGGAAGAAAACGTTGAG+AGG | + | chr8_2:40393311-40393330 | None:intergenic | 40.0% | |
| ! | TTGATCTCTTGGTGCAAGTT+TGG | + | chr8_2:40393476-40393495 | None:intergenic | 40.0% |
| GAAGAAGAACTATCCGATGA+TGG | - | chr8_2:40393968-40393987 | Msa1247440:CDS | 40.0% | |
| GAAGAAGAGAAGGCTTAACA+TGG | - | chr8_2:40394006-40394025 | Msa1247440:CDS | 40.0% | |
| AGAGGAAAATGCAGTTAGCA+AGG | - | chr8_2:40394083-40394102 | Msa1247440:intron | 40.0% | |
| GAGGAAAATGCAGTTAGCAA+GGG | - | chr8_2:40394084-40394103 | Msa1247440:intron | 40.0% | |
| AGCCAAGACAGATTGCTATA+TGG | - | chr8_2:40394119-40394138 | Msa1247440:intron | 40.0% | |
| ! | TTGGTTTGAAAGAGCTGATG+AGG | + | chr8_2:40395109-40395128 | None:intergenic | 40.0% |
| ! | GAGTAACATGTTTTGTGCCA+TGG | - | chr8_2:40395186-40395205 | Msa1247440:intron | 40.0% |
| TAGTCCAGATTGATCATCCA+TGG | + | chr8_2:40395206-40395225 | None:intergenic | 40.0% | |
| TGGATGATCAATCTGGACTA+TGG | - | chr8_2:40395206-40395225 | Msa1247440:intron | 40.0% | |
| TGGAAGAAAACGTTGAGAGG+GGG | + | chr8_2:40393308-40393327 | None:intergenic | 45.0% | |
| ! | CTCTTGGTGCAAGTTTGGAA+TGG | + | chr8_2:40393471-40393490 | None:intergenic | 45.0% |
| !! | ATTGAGTTGAGTGAAGGTGG+AGG | + | chr8_2:40393624-40393643 | None:intergenic | 45.0% |
| ! | GTAATCTTGAGGAGCACATG+AGG | + | chr8_2:40393652-40393671 | None:intergenic | 45.0% |
| TGTGCTCCTCAAGATTACCA+TGG | - | chr8_2:40393654-40393673 | Msa1247440:three_prime_UTR | 45.0% | |
| !!! | GGAGGAGGAGTATCCTTTTT+AGG | - | chr8_2:40393893-40393912 | Msa1247440:CDS | 45.0% |
| !! | TCCGATGATGGATCACAGTT+AGG | - | chr8_2:40393980-40393999 | Msa1247440:CDS | 45.0% |
| CCCTAACTGTGATCCATCAT+CGG | + | chr8_2:40393984-40394003 | None:intergenic | 45.0% | |
| !! | CCGATGATGGATCACAGTTA+GGG | - | chr8_2:40393981-40394000 | Msa1247440:CDS | 45.0% |
| !! | CGATGATGGATCACAGTTAG+GGG | - | chr8_2:40393982-40394001 | Msa1247440:CDS | 45.0% |
| AGTTAGGGGAGAAGAAGAGA+AGG | - | chr8_2:40393996-40394015 | Msa1247440:CDS | 45.0% | |
| GAAACAAGCTTGAACCTGAG+AGG | - | chr8_2:40394065-40394084 | Msa1247440:intron | 45.0% | |
| ! | GCTAACTGCATTTTCCTCTC+AGG | + | chr8_2:40394082-40394101 | None:intergenic | 45.0% |
| GGTTTCAAAACAGAAGGGCT+AGG | - | chr8_2:40394140-40394159 | Msa1247440:intron | 45.0% | |
| TTCAAAACAGAAGGGCTAGG+TGG | - | chr8_2:40394143-40394162 | Msa1247440:intron | 45.0% | |
| CGACAAGAGCTGAATTTCAG+TGG | - | chr8_2:40394332-40394351 | Msa1247440:intron | 45.0% | |
| TGTGCCATGGATGATCAATC+TGG | - | chr8_2:40395199-40395218 | Msa1247440:intron | 45.0% | |
| ATCAATCTGGACTATGGCCA+TGG | - | chr8_2:40395212-40395231 | Msa1247440:intron | 45.0% | |
| !!! | AATGTAATATTATTTTTTAT+GGG | - | chr8_2:40393836-40393855 | Msa1247440:CDS | 5.0% |
| !!! | TTTTTCTATAAAATAATAAA+AGG | - | chr8_2:40395564-40395583 | Msa1247440:five_prime_UTR | 5.0% |
| !!! | TTTTCTATAAAATAATAAAA+GGG | - | chr8_2:40395565-40395584 | Msa1247440:five_prime_UTR | 5.0% |
| !!! | TTTTTTTTTTTTTTTTCATT+TGG | - | chr8_2:40395597-40395616 | Msa1247440:five_prime_UTR | 5.0% |
| AACTGCAACTGAGGCTGCAT+CGG | + | chr8_2:40393738-40393757 | None:intergenic | 50.0% | |
| CGACAACACAACTGCAACTG+AGG | + | chr8_2:40393747-40393766 | None:intergenic | 50.0% | |
| GATCTGGGCCACGACATAAT+AGG | + | chr8_2:40393787-40393806 | None:intergenic | 50.0% | |
| ATGCAGTTAGCAAGGGCTCT+TGG | - | chr8_2:40394091-40394110 | Msa1247440:intron | 50.0% | |
| !! | CCTGCTGGTCTTGAAGAAGA+TGG | + | chr8_2:40395082-40395101 | None:intergenic | 50.0% |
| CCATCTTCTTCAAGACCAGC+AGG | - | chr8_2:40395079-40395098 | Msa1247440:intron | 50.0% | |
| ATCTGGACTATGGCCATGGT+TGG | - | chr8_2:40395216-40395235 | Msa1247440:intron | 50.0% | |
| ! | AAGTGCTGTTGCTCCAACCA+TGG | + | chr8_2:40395232-40395251 | None:intergenic | 50.0% |
| TTATGTCGTGGCCCAGATCG+CGG | - | chr8_2:40393788-40393807 | Msa1247440:CDS | 55.0% | |
| AGCTGATGAGGAACTCCTGC+TGG | + | chr8_2:40395097-40395116 | None:intergenic | 55.0% | |
| AAGGTCTGCGACCGCGATCT+GGG | + | chr8_2:40393802-40393821 | None:intergenic | 60.0% | |
| AAAGGTCTGCGACCGCGATC+TGG | + | chr8_2:40393803-40393822 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 40393195 | 40395748 | 40393195 | ID=Msa1247440;Name=Msa1247440 |
| chr8_2 | mRNA | 40393195 | 40395748 | 40393195 | ID=Msa1247440-mRNA-1;Parent=Msa1247440;Name=Msa1247440-mRNA-1;_AED=0.06;_eAED=0.06;_QI=366|1|1|1|1|1|3|490|282 |
| chr8_2 | exon | 40393195 | 40394038 | 40393195 | ID=Msa1247440-mRNA-1:exon:12352;Parent=Msa1247440-mRNA-1 |
| chr8_2 | exon | 40394670 | 40395049 | 40394670 | ID=Msa1247440-mRNA-1:exon:12351;Parent=Msa1247440-mRNA-1 |
| chr8_2 | exon | 40395268 | 40395748 | 40395268 | ID=Msa1247440-mRNA-1:exon:12350;Parent=Msa1247440-mRNA-1 |
| chr8_2 | five_prime_UTR | 40395383 | 40395748 | 40395383 | ID=Msa1247440-mRNA-1:five_prime_utr;Parent=Msa1247440-mRNA-1 |
| chr8_2 | CDS | 40395268 | 40395382 | 40395268 | ID=Msa1247440-mRNA-1:cds;Parent=Msa1247440-mRNA-1 |
| chr8_2 | CDS | 40394670 | 40395049 | 40394670 | ID=Msa1247440-mRNA-1:cds;Parent=Msa1247440-mRNA-1 |
| chr8_2 | CDS | 40393685 | 40394038 | 40393685 | ID=Msa1247440-mRNA-1:cds;Parent=Msa1247440-mRNA-1 |
| chr8_2 | three_prime_UTR | 40393195 | 40393684 | 40393195 | ID=Msa1247440-mRNA-1:three_prime_utr;Parent=Msa1247440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
