AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1247530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1247530 MtrunA17_Chr8g0362331 92.620 271 12 2 1 267 1 267 3.53e-151 422
Msa1247530 MtrunA17_Chr5g0416091 57.848 223 87 3 48 267 43 261 2.44e-83 250
Msa1247530 MtrunA17_Chr7g0274781 37.129 202 117 4 70 267 31 226 2.20e-47 157
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1247530 AT1G14410.1 63.063 222 77 1 46 267 47 263 2.54e-103 301
Msa1247530 AT2G02740.1 61.991 221 77 3 48 267 54 268 5.24e-97 285
Msa1247530 AT1G71260.1 43.293 164 93 0 84 247 53 216 2.86e-50 165

Find 87 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATATCTTAAATAAGTAATA+AGG 0.212588 8_2:-40687178 Msa1247530:three_prime_UTR
CATCTTTGAAATGTGCTAAA+TGG 0.230518 8_2:-40687362 Msa1247530:three_prime_UTR
TGCGGAATACTCCGGATTTA+TGG 0.234925 8_2:+40687489 None:intergenic
AGCAGCCTTCCCTTTGTAAA+TGG 0.248567 8_2:+40690521 None:intergenic
GGTGTAGTGGGAGGAGGAGG+GGG 0.250693 8_2:+40690828 None:intergenic
ACCACCGGAATTTGCGCCTT+TGG 0.304072 8_2:-40690481 Msa1247530:CDS
GGGTGTAGTGGGAGGAGGAG+GGG 0.309825 8_2:+40690827 None:intergenic
TATATCATGCCATACCTTCT+AGG 0.331839 8_2:-40687532 Msa1247530:CDS
CAGGGGCATACAAGATATCT+AGG 0.351989 8_2:-40690115 Msa1247530:CDS
GTGTAGTGGGAGGAGGAGGG+GGG 0.362307 8_2:+40690829 None:intergenic
GTAGTAATTAAAGAGAATAT+TGG 0.362727 8_2:-40687200 Msa1247530:three_prime_UTR
GAAGTACCTGAAGGGTTGTT+GGG 0.369200 8_2:+40690804 None:intergenic
ACATCCAAAGGCGCAAATTC+CGG 0.383906 8_2:+40690477 None:intergenic
GATAACTCTGCTTTAGATAC+AGG 0.389017 8_2:+40688201 None:intergenic
TCTAAAACAACTAATCTAAC+AGG 0.394762 8_2:+40687333 None:intergenic
GGGGTGTAGTGGGAGGAGGA+GGG 0.394887 8_2:+40690826 None:intergenic
CAAAGGTGTGCCAACCTAGA+AGG 0.402042 8_2:+40687518 None:intergenic
AACAATGCTAATCCAAGATA+TGG 0.413675 8_2:-40687460 Msa1247530:CDS
CTTCAGTTTGCACCCTCTGT+TGG 0.420665 8_2:-40690077 Msa1247530:CDS
CATGTTATCTGTGGATGAAA+TGG 0.422705 8_2:-40689460 Msa1247530:CDS
TCGTAGTCTCCACCATATCT+TGG 0.423400 8_2:+40687448 None:intergenic
ATATCTTAAATAAGTAATAA+GGG 0.427384 8_2:-40687177 Msa1247530:three_prime_UTR
GTGTGATTAGCCTTGGTGCT+AGG 0.434668 8_2:-40689434 Msa1247530:CDS
AACTGCAAATGAGACATTAT+CGG 0.458033 8_2:+40691026 None:intergenic
AAGAAGAAACCAGAACCATC+TGG 0.461026 8_2:+40688811 None:intergenic
AGTTGGAGCTTTGCCACCTA+GGG 0.463185 8_2:-40690559 Msa1247530:CDS
GGCGCAAATTCCGGTGGTCT+AGG 0.463296 8_2:+40690486 None:intergenic
TAGTTGGAGCTTTGCCACCT+AGG 0.466878 8_2:-40690560 Msa1247530:CDS
AGAAGTACCTGAAGGGTTGT+TGG 0.475238 8_2:+40690803 None:intergenic
TTGGTCCGCGTCAATATGAT+TGG 0.481663 8_2:-40690058 Msa1247530:CDS
AGACTACGAATGGAACAGAT+AGG 0.494279 8_2:-40687434 Msa1247530:exon
TCGGTCATTCCATTTACAAA+GGG 0.496674 8_2:-40690530 Msa1247530:CDS
ATATGATTGGAATAGAAAAC+AGG 0.497404 8_2:-40690045 Msa1247530:intron
TGTGATTAGCCTTGGTGCTA+GGG 0.498610 8_2:-40689433 Msa1247530:CDS
GTGAAGGGTTTGAATTTGAA+AGG 0.505474 8_2:+40690897 None:intergenic
AAACCAGAACCATCTGGAAA+AGG 0.514518 8_2:+40688817 None:intergenic
AACTACCTTCCGCCTTTGAA+AGG 0.515428 8_2:+40689387 None:intergenic
CTTTGCAAACTCCATAAATC+CGG 0.519983 8_2:-40687500 Msa1247530:CDS
GTGTGCCAACCTAGAAGGTA+TGG 0.520392 8_2:+40687523 None:intergenic
TGTTGTTTGTGAAAAGTTTG+AGG 0.524480 8_2:+40690946 None:intergenic
GACTACGAATGGAACAGATA+GGG 0.525583 8_2:-40687433 Msa1247530:exon
ATGTTATCTGTGGATGAAAT+GGG 0.526542 8_2:-40689459 Msa1247530:CDS
GTTGTTTGTGAAAAGTTTGA+GGG 0.535078 8_2:+40690947 None:intergenic
CGGATTTATGGAGTTTGCAA+AGG 0.535912 8_2:+40687501 None:intergenic
CACTATCACTCCTAGACCAC+CGG 0.536143 8_2:-40690496 Msa1247530:CDS
GTCGGTCATTCCATTTACAA+AGG 0.538650 8_2:-40690531 Msa1247530:CDS
GTGATGGTGGCTGTGAGTGT+AGG 0.547944 8_2:+40691000 None:intergenic
AAGTACCTGAAGGGTTGTTG+GGG 0.551241 8_2:+40690805 None:intergenic
AGACGTCGGAGTGGCGGCAT+CGG 0.552194 8_2:+40690871 None:intergenic
GAGATGGTGATGTTATTGCT+TGG 0.554865 8_2:-40687282 Msa1247530:three_prime_UTR
TTCGCCGCTGCGGAATACTC+CGG 0.560202 8_2:+40687481 None:intergenic
TGATGAAGGCAAAGTCAGAA+AGG 0.570422 8_2:-40688854 Msa1247530:CDS
ACTACGAATGGAACAGATAG+GGG 0.572940 8_2:-40687432 Msa1247530:exon
TCATGCCATACCTTCTAGGT+TGG 0.573049 8_2:-40687528 Msa1247530:CDS
GGTTGAAGACGTCGGAGTGG+CGG 0.579199 8_2:+40690865 None:intergenic
TCATTCCATTTACAAAGGGA+AGG 0.581597 8_2:-40690526 Msa1247530:CDS
TTGCCACCTAGGGTTTATGT+CGG 0.594634 8_2:-40690549 Msa1247530:CDS
ATTAGCATTGTTCGCCGCTG+CGG 0.595298 8_2:+40687471 None:intergenic
ACGATTATACTTACATCCAA+AGG 0.600307 8_2:+40690465 None:intergenic
GTGGCGGCATCGGATAGTGA+AGG 0.602715 8_2:+40690881 None:intergenic
AATGCTAATCCAAGATATGG+TGG 0.607036 8_2:-40687457 Msa1247530:CDS
ATGGGAAGTGTGATTAGCCT+TGG 0.609938 8_2:-40689441 Msa1247530:CDS
ATGATCCTTTCAAAGGCGGA+AGG 0.610678 8_2:-40689392 Msa1247530:intron
GAAGATGATGATGAGAGTGA+TGG 0.611593 8_2:+40690984 None:intergenic
TTTCATGATCCTTTCAAAGG+CGG 0.614878 8_2:-40689396 Msa1247530:CDS
ATATTGACGCGGACCAACAG+AGG 0.625812 8_2:+40690064 None:intergenic
AGGGGCATACAAGATATCTA+GGG 0.628813 8_2:-40690114 Msa1247530:CDS
AGTACCTGAAGGGTTGTTGG+GGG 0.634191 8_2:+40690806 None:intergenic
GTACCTGAAGGGTTGTTGGG+GGG 0.637107 8_2:+40690807 None:intergenic
CATGTTATGATTAGTGCGTG+TGG 0.637115 8_2:-40687257 Msa1247530:three_prime_UTR
CTATTCCAATCATATTGACG+CGG 0.644850 8_2:+40690053 None:intergenic
GAATGACCGACATAAACCCT+AGG 0.646678 8_2:+40690543 None:intergenic
ATAACTCTGCTTTAGATACA+GGG 0.647998 8_2:+40688202 None:intergenic
GCAGCTGTTCATGTTATCTG+TGG 0.648047 8_2:-40689469 Msa1247530:intron
GATGATGATGAGAGTGATGG+TGG 0.648589 8_2:+40690987 None:intergenic
TCCAAAGGCGCAAATTCCGG+TGG 0.648910 8_2:+40690480 None:intergenic
AAGGGTTGAAGACGTCGGAG+TGG 0.654367 8_2:+40690862 None:intergenic
TGGCGGCATCGGATAGTGAA+GGG 0.656291 8_2:+40690882 None:intergenic
GATATGGTGGAGACTACGAA+TGG 0.656703 8_2:-40687444 Msa1247530:CDS
TATTGACGCGGACCAACAGA+GGG 0.660216 8_2:+40690065 None:intergenic
AGGGGAAGGGTTGAAGACGT+CGG 0.662787 8_2:+40690857 None:intergenic
GCATACAAGATATCTAGGGA+TGG 0.666950 8_2:-40690110 Msa1247530:CDS
CACAAGACTCCCTAGCACCA+AGG 0.667591 8_2:+40689424 None:intergenic
CTACGAATGGAACAGATAGG+GGG 0.691904 8_2:-40687431 Msa1247530:exon
TCAAGACAAAACTGTGAACG+TGG 0.694913 8_2:-40688241 Msa1247530:CDS
TGACCGACATAAACCCTAGG+TGG 0.701814 8_2:+40690546 None:intergenic
AAATCCGGAGTATTCCGCAG+CGG 0.752636 8_2:-40687485 Msa1247530:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTAATTATTAATTAATT+AGG + chr8_2:40689794-40689813 None:intergenic 0.0%
!!! AAAAAAAAATGAAACTTTTT+GGG + chr8_2:40687529-40687548 None:intergenic 10.0%
!!! AAAAAAAAAATGAAACTTTT+TGG + chr8_2:40687530-40687549 None:intergenic 10.0%
!!! AAAAGTTTCATTTTTTTTTT+TGG - chr8_2:40687530-40687549 Msa1247530:CDS 10.0%
!!! AATTTTTGTTTTAGAAATTT+TGG - chr8_2:40690941-40690960 Msa1247530:CDS 10.0%
!! ATATCTTAAATAAGTAATAA+GGG - chr8_2:40691074-40691093 Msa1247530:five_prime_UTR 10.0%
!!! AAAAAAAATGAAACTTTTTG+GGG + chr8_2:40687528-40687547 None:intergenic 15.0%
!!! TCATTTTTTTTTTTGGTTAT+TGG - chr8_2:40687537-40687556 Msa1247530:intron 15.0%
!! AAATGAAATATATCTAGATT+CGG + chr8_2:40689265-40689284 None:intergenic 15.0%
!!! TTATTATGGCATTTTTTTAA+AGG - chr8_2:40689984-40690003 Msa1247530:intron 15.0%
!! AAGAATCAAAAATATTAATC+AGG + chr8_2:40690690-40690709 None:intergenic 15.0%
!! GATATCTTAAATAAGTAATA+AGG - chr8_2:40691073-40691092 Msa1247530:five_prime_UTR 15.0%
!! ACTATAGATAATGAAATTGT+TGG - chr8_2:40687592-40687611 Msa1247530:intron 20.0%
!!! TACAAAGTGTTTTAAATTTG+CGG - chr8_2:40687913-40687932 Msa1247530:intron 20.0%
!!! AGAATTGAATGTTTTTAATG+TGG - chr8_2:40688090-40688109 Msa1247530:intron 20.0%
!!! TCAGTATTTTCAATTTGAAA+AGG - chr8_2:40689178-40689197 Msa1247530:intron 20.0%
!!! TTCATTTTATGTTTGTTGTA+TGG - chr8_2:40689278-40689297 Msa1247530:intron 20.0%
!!! TCATTTTATGTTTGTTGTAT+GGG - chr8_2:40689279-40689298 Msa1247530:intron 20.0%
!! TGATGCAAAAATTGAAAATA+AGG + chr8_2:40689495-40689514 None:intergenic 20.0%
!! ATAGATTATGGAGATATAAT+AGG + chr8_2:40689874-40689893 None:intergenic 20.0%
!! TTGAAAGATGATATAGATTA+TGG + chr8_2:40689886-40689905 None:intergenic 20.0%
!! GTAGTAATTAAAGAGAATAT+TGG - chr8_2:40691051-40691070 Msa1247530:five_prime_UTR 20.0%
!!! AAGCATGTTTTAGAGAAAAT+GGG + chr8_2:40687487-40687506 None:intergenic 25.0%
!!! AAAGCATGTTTTAGAGAAAA+TGG + chr8_2:40687488-40687507 None:intergenic 25.0%
! TTGTACTAAATCTCGTATAA+TGG + chr8_2:40687898-40687917 None:intergenic 25.0%
!!! TGACGGATGATTATTTATTT+TGG - chr8_2:40688016-40688035 Msa1247530:intron 25.0%
! ATATGATTGGAATAGAAAAC+AGG - chr8_2:40688206-40688225 Msa1247530:CDS 25.0%
!!! ATAGAAAACAGGTTAGTTTA+CGG - chr8_2:40688217-40688236 Msa1247530:CDS 25.0%
! TTCGAATCAAATAGCATAAA+TGG + chr8_2:40688330-40688349 None:intergenic 25.0%
! AAATACCATGTGATGAAATT+TGG - chr8_2:40688353-40688372 Msa1247530:intron 25.0%
! AATACCATGTGATGAAATTT+GGG - chr8_2:40688354-40688373 Msa1247530:intron 25.0%
!!! TCTATTAAGAGTGTTAATCT+TGG - chr8_2:40688387-40688406 Msa1247530:intron 25.0%
!!! TTTTTTCCAGTGTTGTTAAA+TGG - chr8_2:40688432-40688451 Msa1247530:intron 25.0%
! TTGTACAAAATAGCATATCA+TGG + chr8_2:40688509-40688528 None:intergenic 25.0%
! TAGCGAAATACAAAAAATAG+CGG + chr8_2:40688600-40688619 None:intergenic 25.0%
!!! TTTTTTCATGATCCTTTCAA+AGG - chr8_2:40688852-40688871 Msa1247530:CDS 25.0%
!!! ACTTCCTAATTGTTTTGTAA+TGG - chr8_2:40688896-40688915 Msa1247530:intron 25.0%
!!! CTTCCTAATTGTTTTGTAAT+GGG - chr8_2:40688897-40688916 Msa1247530:intron 25.0%
! AATCCCATTACAAAACAATT+AGG + chr8_2:40688903-40688922 None:intergenic 25.0%
!! ACTGCATAAAAAGACATTTT+CGG + chr8_2:40689378-40689397 None:intergenic 25.0%
! ATAATGATGCAACTTGAATA+TGG + chr8_2:40689539-40689558 None:intergenic 25.0%
!! TGATTTGTATTTATGATGAC+AGG + chr8_2:40689846-40689865 None:intergenic 25.0%
! AAAAATGCCATAATAAAGTC+AGG + chr8_2:40689980-40689999 None:intergenic 25.0%
! AAACTAACTCATCATCATTA+CGG - chr8_2:40690181-40690200 Msa1247530:intron 25.0%
! AGTGAATGAATAAACATAAC+AGG + chr8_2:40690579-40690598 None:intergenic 25.0%
!! TCTAAAACAACTAATCTAAC+AGG + chr8_2:40690921-40690940 None:intergenic 25.0%
AACTGCAAATGAGACATTAT+CGG + chr8_2:40687228-40687247 None:intergenic 30.0%
GTTGTTTGTGAAAAGTTTGA+GGG + chr8_2:40687307-40687326 None:intergenic 30.0%
! TGTTGTTTGTGAAAAGTTTG+AGG + chr8_2:40687308-40687327 None:intergenic 30.0%
! TTTGAAAGGAAGAGAGTTTT+TGG + chr8_2:40687343-40687362 None:intergenic 30.0%
!! TTTAGAGAAAATGGGTTAGA+GGG + chr8_2:40687479-40687498 None:intergenic 30.0%
!!! TTTTAGAGAAAATGGGTTAG+AGG + chr8_2:40687480-40687499 None:intergenic 30.0%
TGACACTAGGAATTTGTAAA+GGG - chr8_2:40687619-40687638 Msa1247530:intron 30.0%
GGTTGTATTTGTTTGTGTAA+TGG - chr8_2:40687640-40687659 Msa1247530:intron 30.0%
TATTTGTGTGTGTGTTTAGT+TGG - chr8_2:40687675-40687694 Msa1247530:intron 30.0%
ACGATTATACTTACATCCAA+AGG + chr8_2:40687789-40687808 None:intergenic 30.0%
!! TATTTTGGATTTGATTGTGC+TGG - chr8_2:40688031-40688050 Msa1247530:intron 30.0%
! GTTTTTAATGTGGAACGTTT+TGG - chr8_2:40688100-40688119 Msa1247530:intron 30.0%
! TTTTGGTGAATTTTGTAGTC+AGG - chr8_2:40688117-40688136 Msa1247530:intron 30.0%
! TTTGGTGAATTTTGTAGTCA+GGG - chr8_2:40688118-40688137 Msa1247530:intron 30.0%
!! TAGAAAACAGGTTAGTTTAC+GGG - chr8_2:40688218-40688237 Msa1247530:CDS 30.0%
!! TTTTCTGAAAACTTACGTCA+TGG - chr8_2:40688294-40688313 Msa1247530:intron 30.0%
! TTTCTGAAAACTTACGTCAT+GGG - chr8_2:40688295-40688314 Msa1247530:intron 30.0%
!! CAAACTCTATCAAGTTTTGT+TGG + chr8_2:40688643-40688662 None:intergenic 30.0%
CTCTGATTATGATCTTTGTA+TGG - chr8_2:40688683-40688702 Msa1247530:intron 30.0%
!!! TGATCTTTGTATGGTTTTGT+TGG - chr8_2:40688692-40688711 Msa1247530:intron 30.0%
! TTGTTTAAAATGTGACTGTG+AGG - chr8_2:40688737-40688756 Msa1247530:intron 30.0%
ATGTTATCTGTGGATGAAAT+GGG - chr8_2:40688792-40688811 Msa1247530:intron 30.0%
AGCAGTAAAAATCTAAGCAA+TGG + chr8_2:40688947-40688966 None:intergenic 30.0%
TCTGTATGAACTGACATATA+TGG + chr8_2:40689066-40689085 None:intergenic 30.0%
! TTTTATTGAACGTCCATATG+TGG - chr8_2:40689209-40689228 Msa1247530:intron 30.0%
!!! TTTTATGTTTGTTGTATGGG+TGG - chr8_2:40689282-40689301 Msa1247530:intron 30.0%
ATGAAGAAAGAACATTACTG+AGG + chr8_2:40689469-40689488 None:intergenic 30.0%
TTGTACAGAACTGAATCAAT+CGG + chr8_2:40689723-40689742 None:intergenic 30.0%
TGATTCAGTTCTGTACAAAA+AGG - chr8_2:40689725-40689744 Msa1247530:intron 30.0%
TGCAGATATGGCATAAAAAT+AGG + chr8_2:40689913-40689932 None:intergenic 30.0%
!! CTTCGTTTTTATTGCAGATA+TGG + chr8_2:40689925-40689944 None:intergenic 30.0%
! ATAACTCTGCTTTAGATACA+GGG + chr8_2:40690052-40690071 None:intergenic 30.0%
ACATTGCAATTAGAAATCAG+AGG + chr8_2:40690107-40690126 None:intergenic 30.0%
AATACAGTGTTGTCAAATAG+CGG - chr8_2:40690375-40690394 Msa1247530:intron 30.0%
! TTTTTCCGCAGTATACTATT+TGG - chr8_2:40690430-40690449 Msa1247530:intron 30.0%
TAGTACCAAATAGTATACTG+CGG + chr8_2:40690438-40690457 None:intergenic 30.0%
AACAATGCTAATCCAAGATA+TGG - chr8_2:40690791-40690810 Msa1247530:intron 30.0%
!! CATCTTTGAAATGTGCTAAA+TGG - chr8_2:40690889-40690908 Msa1247530:CDS 30.0%
GTGAAGGGTTTGAATTTGAA+AGG + chr8_2:40687357-40687376 None:intergenic 35.0%
!! TTAGAGAAAATGGGTTAGAG+GGG + chr8_2:40687478-40687497 None:intergenic 35.0%
GTGACACTAGGAATTTGTAA+AGG - chr8_2:40687618-40687637 Msa1247530:intron 35.0%
!! GTTTGTGTAATGGACTAACT+TGG - chr8_2:40687650-40687669 Msa1247530:intron 35.0%
TCGGTCATTCCATTTACAAA+GGG - chr8_2:40687721-40687740 Msa1247530:intron 35.0%
TCATTCCATTTACAAAGGGA+AGG - chr8_2:40687725-40687744 Msa1247530:intron 35.0%
! TTTTGTGATACGCGAAATTG+CGG - chr8_2:40687829-40687848 Msa1247530:intron 35.0%
!! GTGTTTTAAATTTGCGGCTA+TGG - chr8_2:40687919-40687938 Msa1247530:intron 35.0%
! TTTTAAATTTGCGGCTATGG+TGG - chr8_2:40687922-40687941 Msa1247530:intron 35.0%
! TTGGTGAATTTTGTAGTCAG+GGG - chr8_2:40688119-40688138 Msa1247530:intron 35.0%
CTATTCCAATCATATTGACG+CGG + chr8_2:40688201-40688220 None:intergenic 35.0%
! TTATATGATCTGACTTGTGC+TGG - chr8_2:40688271-40688290 Msa1247530:intron 35.0%
! TTTCCAGTGTTGTTAAATGG+CGG - chr8_2:40688435-40688454 Msa1247530:intron 35.0%
CATGTTATCTGTGGATGAAA+TGG - chr8_2:40688791-40688810 Msa1247530:intron 35.0%
TTTCATGATCCTTTCAAAGG+CGG - chr8_2:40688855-40688874 Msa1247530:CDS 35.0%
! CCTTATCGTTTTCTATGAGA+GGG - chr8_2:40688977-40688996 Msa1247530:intron 35.0%
! CTTATCGTTTTCTATGAGAG+GGG - chr8_2:40688978-40688997 Msa1247530:intron 35.0%
TATGTCAGTTCATACAGATC+TGG - chr8_2:40689068-40689087 Msa1247530:intron 35.0%
ATGTCAGTTCATACAGATCT+GGG - chr8_2:40689069-40689088 Msa1247530:intron 35.0%
TTGATTGAACAGTCCAAATG+TGG + chr8_2:40689134-40689153 None:intergenic 35.0%
ACTGTTCAATCAAGATCACA+CGG - chr8_2:40689141-40689160 Msa1247530:intron 35.0%
! GTCTTTTTATGCAGTGATGA+AGG - chr8_2:40689383-40689402 Msa1247530:intron 35.0%
GATGCAACTTGAATATGGAA+AGG + chr8_2:40689534-40689553 None:intergenic 35.0%
! GATAACTCTGCTTTAGATAC+AGG + chr8_2:40690053-40690072 None:intergenic 35.0%
! AGTTCTACGCTCAATTTTCA+AGG - chr8_2:40690073-40690092 Msa1247530:CDS 35.0%
TGCAATTAGAAATCAGAGGT+AGG + chr8_2:40690103-40690122 None:intergenic 35.0%
! ATTATCAGAGCATCACATCA+TGG + chr8_2:40690138-40690157 None:intergenic 35.0%
GTGATGCTCTGATAATTCAA+TGG - chr8_2:40690142-40690161 Msa1247530:intron 35.0%
! CAATGGAATTTGCTTGACAA+TGG + chr8_2:40690264-40690283 None:intergenic 35.0%
AAAAAGACATGTACCTAGTG+TGG + chr8_2:40690292-40690311 None:intergenic 35.0%
! TCACGGATTGCAAAAAATAG+CGG + chr8_2:40690515-40690534 None:intergenic 35.0%
CTATTCAGTGTTGTCAATCA+CGG + chr8_2:40690532-40690551 None:intergenic 35.0%
ACATAGTAGTGCTTCAACAA+AGG - chr8_2:40690605-40690624 Msa1247530:intron 35.0%
TATATCATGCCATACCTTCT+AGG - chr8_2:40690719-40690738 Msa1247530:intron 35.0%
CTTTGCAAACTCCATAAATC+CGG - chr8_2:40690751-40690770 Msa1247530:intron 35.0%
AATGCTAATCCAAGATATGG+TGG - chr8_2:40690794-40690813 Msa1247530:intron 35.0%
!!! AGAAATTTTGGCTCTTGAGA+TGG - chr8_2:40690953-40690972 Msa1247530:CDS 35.0%
! GAAGATGATGATGAGAGTGA+TGG + chr8_2:40687270-40687289 None:intergenic 40.0%
!! GGGAAAAAGAAGTACCTGAA+GGG + chr8_2:40687458-40687477 None:intergenic 40.0%
! AATTGTTGGTGAGTGACACT+AGG - chr8_2:40687606-40687625 Msa1247530:intron 40.0%
GTCGGTCATTCCATTTACAA+AGG - chr8_2:40687720-40687739 Msa1247530:intron 40.0%
! CTCGTATAATGGAACAATCG+CGG + chr8_2:40687887-40687906 None:intergenic 40.0%
TTCCCAATTGACAATGCTGA+CGG - chr8_2:40687999-40688018 Msa1247530:intron 40.0%
ATCCGTCAGCATTGTCAATT+GGG + chr8_2:40688004-40688023 None:intergenic 40.0%
! AGGGGCATACAAGATATCTA+GGG - chr8_2:40688137-40688156 Msa1247530:intron 40.0%
GCATACAAGATATCTAGGGA+TGG - chr8_2:40688141-40688160 Msa1247530:intron 40.0%
TCGACCCAAATTTCATCACA+TGG + chr8_2:40688361-40688380 None:intergenic 40.0%
TATTTCGCTATTGACAGCAC+TGG - chr8_2:40688610-40688629 Msa1247530:intron 40.0%
! GCCTTATCGTTTTCTATGAG+AGG - chr8_2:40688976-40688995 Msa1247530:intron 40.0%
CCCTCTCATAGAAAACGATA+AGG + chr8_2:40688980-40688999 None:intergenic 40.0%
AACACATAGTCAGCCACATA+TGG + chr8_2:40689225-40689244 None:intergenic 40.0%
TGATGAAGGCAAAGTCAGAA+AGG - chr8_2:40689397-40689416 Msa1247530:CDS 40.0%
! AAGATTGAGCCTTTTCCAGA+TGG - chr8_2:40689425-40689444 Msa1247530:CDS 40.0%
AAACCAGAACCATCTGGAAA+AGG + chr8_2:40689437-40689456 None:intergenic 40.0%
AAGAAGAAACCAGAACCATC+TGG + chr8_2:40689443-40689462 None:intergenic 40.0%
CTCGAGTCCTGACTTTATTA+TGG - chr8_2:40689970-40689989 Msa1247530:intron 40.0%
TCAAGACAAAACTGTGAACG+TGG - chr8_2:40690010-40690029 Msa1247530:intron 40.0%
ACAACACTGAATAGCTCAAC+AGG - chr8_2:40690538-40690557 Msa1247530:CDS 40.0%
CGGATTTATGGAGTTTGCAA+AGG + chr8_2:40690753-40690772 None:intergenic 40.0%
AGACTACGAATGGAACAGAT+AGG - chr8_2:40690817-40690836 Msa1247530:CDS 40.0%
GACTACGAATGGAACAGATA+GGG - chr8_2:40690818-40690837 Msa1247530:CDS 40.0%
ACTACGAATGGAACAGATAG+GGG - chr8_2:40690819-40690838 Msa1247530:CDS 40.0%
! GAGATGGTGATGTTATTGCT+TGG - chr8_2:40690969-40690988 Msa1247530:CDS 40.0%
CATGTTATGATTAGTGCGTG+TGG - chr8_2:40690994-40691013 Msa1247530:CDS 40.0%
! GATGATGATGAGAGTGATGG+TGG + chr8_2:40687267-40687286 None:intergenic 45.0%
AAGTACCTGAAGGGTTGTTG+GGG + chr8_2:40687449-40687468 None:intergenic 45.0%
! GAAGTACCTGAAGGGTTGTT+GGG + chr8_2:40687450-40687469 None:intergenic 45.0%
!! AGAAGTACCTGAAGGGTTGT+TGG + chr8_2:40687451-40687470 None:intergenic 45.0%
!! GGGGAAAAAGAAGTACCTGA+AGG + chr8_2:40687459-40687478 None:intergenic 45.0%
TTGCCACCTAGGGTTTATGT+CGG - chr8_2:40687702-40687721 Msa1247530:intron 45.0%
GAATGACCGACATAAACCCT+AGG + chr8_2:40687711-40687730 None:intergenic 45.0%
AGCAGCCTTCCCTTTGTAAA+TGG + chr8_2:40687733-40687752 None:intergenic 45.0%
! ACATCCAAAGGCGCAAATTC+CGG + chr8_2:40687777-40687796 None:intergenic 45.0%
ACGCGAAATTGCGGCTATAA+TGG - chr8_2:40687838-40687857 Msa1247530:intron 45.0%
CATCCGTCAGCATTGTCAAT+TGG + chr8_2:40688005-40688024 None:intergenic 45.0%
! CAGGGGCATACAAGATATCT+AGG - chr8_2:40688136-40688155 Msa1247530:intron 45.0%
TTGGTCCGCGTCAATATGAT+TGG - chr8_2:40688193-40688212 Msa1247530:CDS 45.0%
!!! ATGGTTTTGTTGGTGCTACG+AGG - chr8_2:40688702-40688721 Msa1247530:intron 45.0%
!!! TTTTGTTGGTGCTACGAGGT+TGG - chr8_2:40688706-40688725 Msa1247530:intron 45.0%
GCAGCTGTTCATGTTATCTG+TGG - chr8_2:40688782-40688801 Msa1247530:intron 45.0%
!! ATGGGAAGTGTGATTAGCCT+TGG - chr8_2:40688810-40688829 Msa1247530:CDS 45.0%
!! TGTGATTAGCCTTGGTGCTA+GGG - chr8_2:40688818-40688837 Msa1247530:CDS 45.0%
ATGATCCTTTCAAAGGCGGA+AGG - chr8_2:40688859-40688878 Msa1247530:intron 45.0%
AACTACCTTCCGCCTTTGAA+AGG + chr8_2:40688867-40688886 None:intergenic 45.0%
! GTTTTCTATGAGAGGGGACA+TGG - chr8_2:40688984-40689003 Msa1247530:intron 45.0%
CAATCAAGATCACACGGTCT+AGG - chr8_2:40689147-40689166 Msa1247530:intron 45.0%
TCAAAACCTGTTCCCACATG+TGG + chr8_2:40689308-40689327 None:intergenic 45.0%
TTCCATTGTCTGACCACACT+AGG - chr8_2:40690276-40690295 Msa1247530:intron 45.0%
TACCTAGTGTGGTCAGACAA+TGG + chr8_2:40690281-40690300 None:intergenic 45.0%
TCATGCCATACCTTCTAGGT+TGG - chr8_2:40690723-40690742 Msa1247530:intron 45.0%
TGCGGAATACTCCGGATTTA+TGG + chr8_2:40690765-40690784 None:intergenic 45.0%
TCGTAGTCTCCACCATATCT+TGG + chr8_2:40690806-40690825 None:intergenic 45.0%
! GATATGGTGGAGACTACGAA+TGG - chr8_2:40690807-40690826 Msa1247530:intron 45.0%
CTACGAATGGAACAGATAGG+GGG - chr8_2:40690820-40690839 Msa1247530:CDS 45.0%
AGTACCTGAAGGGTTGTTGG+GGG + chr8_2:40687448-40687467 None:intergenic 50.0%
TAGTTGGAGCTTTGCCACCT+AGG - chr8_2:40687691-40687710 Msa1247530:intron 50.0%
AGTTGGAGCTTTGCCACCTA+GGG - chr8_2:40687692-40687711 Msa1247530:intron 50.0%
TGACCGACATAAACCCTAGG+TGG + chr8_2:40687708-40687727 None:intergenic 50.0%
CACTATCACTCCTAGACCAC+CGG - chr8_2:40687755-40687774 Msa1247530:intron 50.0%
CTTCAGTTTGCACCCTCTGT+TGG - chr8_2:40688174-40688193 Msa1247530:intron 50.0%
TATTGACGCGGACCAACAGA+GGG + chr8_2:40688189-40688208 None:intergenic 50.0%
ATATTGACGCGGACCAACAG+AGG + chr8_2:40688190-40688209 None:intergenic 50.0%
!! GGTTAGTTTACGGGTGACGA+TGG - chr8_2:40688227-40688246 Msa1247530:CDS 50.0%
GTGACTGTGAGGTCATCATC+TGG - chr8_2:40688748-40688767 Msa1247530:intron 50.0%
!! GTGTGATTAGCCTTGGTGCT+AGG - chr8_2:40688817-40688836 Msa1247530:CDS 50.0%
TGTACGCAGTCAGCCACATT+TGG - chr8_2:40689118-40689137 Msa1247530:intron 50.0%
TTGTATGGGTGGCCACATGT+GGG - chr8_2:40689293-40689312 Msa1247530:intron 50.0%
! GAGCCTTTTCCAGATGGTTC+TGG - chr8_2:40689431-40689450 Msa1247530:CDS 50.0%
GTGTGCCAACCTAGAAGGTA+TGG + chr8_2:40690731-40690750 None:intergenic 50.0%
! CAAAGGTGTGCCAACCTAGA+AGG + chr8_2:40690736-40690755 None:intergenic 50.0%
! AAATCCGGAGTATTCCGCAG+CGG - chr8_2:40690766-40690785 Msa1247530:intron 50.0%
ATTAGCATTGTTCGCCGCTG+CGG + chr8_2:40690783-40690802 None:intergenic 50.0%
!! GTGATGGTGGCTGTGAGTGT+AGG + chr8_2:40687254-40687273 None:intergenic 55.0%
! TGGCGGCATCGGATAGTGAA+GGG + chr8_2:40687372-40687391 None:intergenic 55.0%
AAGGGTTGAAGACGTCGGAG+TGG + chr8_2:40687392-40687411 None:intergenic 55.0%
AGGGGAAGGGTTGAAGACGT+CGG + chr8_2:40687397-40687416 None:intergenic 55.0%
GTACCTGAAGGGTTGTTGGG+GGG + chr8_2:40687447-40687466 None:intergenic 55.0%
ACCACCGGAATTTGCGCCTT+TGG - chr8_2:40687770-40687789 Msa1247530:intron 55.0%
! TCCAAAGGCGCAAATTCCGG+TGG + chr8_2:40687774-40687793 None:intergenic 55.0%
GCGCCGCCATTTAACAACAC+TGG + chr8_2:40688441-40688460 None:intergenic 55.0%
CACAAGACTCCCTAGCACCA+AGG + chr8_2:40688830-40688849 None:intergenic 55.0%
CTGACTGCGTACAGTCATGG+GGG + chr8_2:40689111-40689130 None:intergenic 55.0%
GCTGACTGCGTACAGTCATG+GGG + chr8_2:40689112-40689131 None:intergenic 55.0%
GGCTGACTGCGTACAGTCAT+GGG + chr8_2:40689113-40689132 None:intergenic 55.0%
TGGCTGACTGCGTACAGTCA+TGG + chr8_2:40689114-40689133 None:intergenic 55.0%
GTTGTATGGGTGGCCACATG+TGG - chr8_2:40689292-40689311 Msa1247530:intron 55.0%
! GTGGCGGCATCGGATAGTGA+AGG + chr8_2:40687373-40687392 None:intergenic 60.0%
GGTTGAAGACGTCGGAGTGG+CGG + chr8_2:40687389-40687408 None:intergenic 60.0%
! TTGTTGGGGGGTGTAGTGGG+AGG + chr8_2:40687435-40687454 None:intergenic 60.0%
! GGGTTGTTGGGGGGTGTAGT+GGG + chr8_2:40687438-40687457 None:intergenic 60.0%
! AGGGTTGTTGGGGGGTGTAG+TGG + chr8_2:40687439-40687458 None:intergenic 60.0%
ACACCCCCCAACAACCCTTC+AGG - chr8_2:40687441-40687460 Msa1247530:CDS 60.0%
GGCGCAAATTCCGGTGGTCT+AGG + chr8_2:40687768-40687787 None:intergenic 60.0%
TTCGCCGCTGCGGAATACTC+CGG + chr8_2:40690773-40690792 None:intergenic 60.0%
AGACGTCGGAGTGGCGGCAT+CGG + chr8_2:40687383-40687402 None:intergenic 65.0%
GAGGGGGGTTTGGAGGGGAA+GGG + chr8_2:40687410-40687429 None:intergenic 65.0%
AGGAGGAGGGGGGTTTGGAG+GGG + chr8_2:40687415-40687434 None:intergenic 65.0%
GAGGAGGAGGGGGGTTTGGA+GGG + chr8_2:40687416-40687435 None:intergenic 65.0%
! GTGTAGTGGGAGGAGGAGGG+GGG + chr8_2:40687425-40687444 None:intergenic 65.0%
! GGTGTAGTGGGAGGAGGAGG+GGG + chr8_2:40687426-40687445 None:intergenic 65.0%
! GGGTGTAGTGGGAGGAGGAG+GGG + chr8_2:40687427-40687446 None:intergenic 65.0%
! GGGGTGTAGTGGGAGGAGGA+GGG + chr8_2:40687428-40687447 None:intergenic 65.0%
! TTGGGGGGTGTAGTGGGAGG+AGG + chr8_2:40687432-40687451 None:intergenic 65.0%
GGGTGGCCACATGTGGGAAC+AGG - chr8_2:40689299-40689318 Msa1247530:intron 65.0%
GGAGGGGGGTTTGGAGGGGA+AGG + chr8_2:40687411-40687430 None:intergenic 70.0%
GGAGGAGGAGGGGGGTTTGG+AGG + chr8_2:40687417-40687436 None:intergenic 70.0%
GTGGGAGGAGGAGGGGGGTT+TGG + chr8_2:40687420-40687439 None:intergenic 70.0%
! GGGGGTGTAGTGGGAGGAGG+AGG + chr8_2:40687429-40687448 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 40687158 40691115 40687158 ID=Msa1247530;Name=Msa1247530
chr8_2 mRNA 40687158 40691115 40687158 ID=Msa1247530-mRNA-1;Parent=Msa1247530;Name=Msa1247530-mRNA-1;_AED=0.04;_eAED=0.04;_QI=73|1|1|1|1|1|7|277|267
chr8_2 exon 40687158 40687554 40687158 ID=Msa1247530-mRNA-1:exon:12447;Parent=Msa1247530-mRNA-1
chr8_2 exon 40688179 40688267 40688179 ID=Msa1247530-mRNA-1:exon:12446;Parent=Msa1247530-mRNA-1
chr8_2 exon 40688803 40688876 40688803 ID=Msa1247530-mRNA-1:exon:12445;Parent=Msa1247530-mRNA-1
chr8_2 exon 40689393 40689487 40689393 ID=Msa1247530-mRNA-1:exon:12444;Parent=Msa1247530-mRNA-1
chr8_2 exon 40690046 40690138 40690046 ID=Msa1247530-mRNA-1:exon:12443;Parent=Msa1247530-mRNA-1
chr8_2 exon 40690479 40690579 40690479 ID=Msa1247530-mRNA-1:exon:12442;Parent=Msa1247530-mRNA-1
chr8_2 exon 40690811 40691115 40690811 ID=Msa1247530-mRNA-1:exon:12441;Parent=Msa1247530-mRNA-1
chr8_2 five_prime_UTR 40691043 40691115 40691043 ID=Msa1247530-mRNA-1:five_prime_utr;Parent=Msa1247530-mRNA-1
chr8_2 CDS 40690811 40691042 40690811 ID=Msa1247530-mRNA-1:cds;Parent=Msa1247530-mRNA-1
chr8_2 CDS 40690479 40690579 40690479 ID=Msa1247530-mRNA-1:cds;Parent=Msa1247530-mRNA-1
chr8_2 CDS 40690046 40690138 40690046 ID=Msa1247530-mRNA-1:cds;Parent=Msa1247530-mRNA-1
chr8_2 CDS 40689393 40689487 40689393 ID=Msa1247530-mRNA-1:cds;Parent=Msa1247530-mRNA-1
chr8_2 CDS 40688803 40688876 40688803 ID=Msa1247530-mRNA-1:cds;Parent=Msa1247530-mRNA-1
chr8_2 CDS 40688179 40688267 40688179 ID=Msa1247530-mRNA-1:cds;Parent=Msa1247530-mRNA-1
chr8_2 CDS 40687435 40687554 40687435 ID=Msa1247530-mRNA-1:cds;Parent=Msa1247530-mRNA-1
chr8_2 three_prime_UTR 40687158 40687434 40687158 ID=Msa1247530-mRNA-1:three_prime_utr;Parent=Msa1247530-mRNA-1
Gene Sequence

>Msa1247530

ATGTCTCATTTGCAGTTACACCTACACTCACAGCCACCATCACTCTCATCATCATCTTCTTCTTCTTTTTCATCCCTCAAACTTTTCACAAACAACAACTCTTTCTCTTCCAAAAACTCTCTTCCTTTCAAATTCAAACCCTTCACTATCCGATGCCGCCACTCCGACGTCTTCAACCCTTCCCCTCCAAACCCCCCTCCTCCTCCCACTACACCCCCCAACAACCCTTCAGTTGGAGCTTTGCCACCTAGGGTTTATGTCGGTCATTCCATTTACAAAGGGAAGGCTGCTCTCACTATCACTCCTAGACCACCGGAATTTGCGCCTTTGGATTCAGGGGCATACAAGATATCTAGGGATGGTTGTTTGCTGCTTCAGTTTGCACCCTCTGTTGGTCCGCGTCAATATGATTGGAATAGAAAACAGCTGTTCATGTTATCTGTGGATGAAATGGGAAGTGTGATTAGCCTTGGTGCTAGGGAGTCTTGTGAATTTTTTCATGATCCTTTCAAAGGCGGAAGTGATGAAGGCAAAGTCAGAAAGGTTTTGAAGATTGAGCCTTTTCCAGATGGTTCTGGTTTCTTCTTTAACCTCAGTGTTCAAGACAAAACTGTGAACGTGGATGTAAGCATGAATATCCCTGTATCTAAAGCAGAGTTATCAGTTCTACGCTCAATTTTCAAGTATATCATGCCATACCTTCTAGGTTGGCACACCTTTGCAAACTCCATAAATCCGGAGTATTCCGCAGCGGCGAACAATGCTAATCCAAGATATGGTGGAGACTACGAATGGAACAGATAG

Protein sequence

>Msa1247530

MSHLQLHLHSQPPSLSSSSSSSFSSLKLFTNNNSFSSKNSLPFKFKPFTIRCRHSDVFNPSPPNPPPPPTTPPNNPSVGALPPRVYVGHSIYKGKAALTITPRPPEFAPLDSGAYKISRDGCLLLQFAPSVGPRQYDWNRKQLFMLSVDEMGSVISLGARESCEFFHDPFKGGSDEGKVRKVLKIEPFPDGSGFFFNLSVQDKTVNVDVSMNIPVSKAELSVLRSIFKYIMPYLLGWHTFANSINPEYSAAANNANPRYGGDYEWNR*