Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1247530 | XP_013445767.1 | 92.620 | 271 | 12 | 2 | 1 | 267 | 1 | 267 | 3.83e-147 | 422 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1247530 | sp|Q9M9S3|WHY1_ARATH | 63.063 | 222 | 77 | 1 | 46 | 267 | 47 | 263 | 2.50e-102 | 301 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1247530 | A0A072TSF9 | 92.620 | 271 | 12 | 2 | 1 | 267 | 1 | 267 | 1.83e-147 | 422 |
Gene ID | Type | Classification |
---|---|---|
Msa1247530 | TF | Whirly |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1247530 | MtrunA17_Chr8g0362331 | 92.620 | 271 | 12 | 2 | 1 | 267 | 1 | 267 | 3.53e-151 | 422 |
Msa1247530 | MtrunA17_Chr5g0416091 | 57.848 | 223 | 87 | 3 | 48 | 267 | 43 | 261 | 2.44e-83 | 250 |
Msa1247530 | MtrunA17_Chr7g0274781 | 37.129 | 202 | 117 | 4 | 70 | 267 | 31 | 226 | 2.20e-47 | 157 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1247530 | AT1G14410.1 | 63.063 | 222 | 77 | 1 | 46 | 267 | 47 | 263 | 2.54e-103 | 301 |
Msa1247530 | AT2G02740.1 | 61.991 | 221 | 77 | 3 | 48 | 267 | 54 | 268 | 5.24e-97 | 285 |
Msa1247530 | AT1G71260.1 | 43.293 | 164 | 93 | 0 | 84 | 247 | 53 | 216 | 2.86e-50 | 165 |
Find 87 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATATCTTAAATAAGTAATA+AGG | 0.212588 | 8_2:-40687178 | Msa1247530:three_prime_UTR |
CATCTTTGAAATGTGCTAAA+TGG | 0.230518 | 8_2:-40687362 | Msa1247530:three_prime_UTR |
TGCGGAATACTCCGGATTTA+TGG | 0.234925 | 8_2:+40687489 | None:intergenic |
AGCAGCCTTCCCTTTGTAAA+TGG | 0.248567 | 8_2:+40690521 | None:intergenic |
GGTGTAGTGGGAGGAGGAGG+GGG | 0.250693 | 8_2:+40690828 | None:intergenic |
ACCACCGGAATTTGCGCCTT+TGG | 0.304072 | 8_2:-40690481 | Msa1247530:CDS |
GGGTGTAGTGGGAGGAGGAG+GGG | 0.309825 | 8_2:+40690827 | None:intergenic |
TATATCATGCCATACCTTCT+AGG | 0.331839 | 8_2:-40687532 | Msa1247530:CDS |
CAGGGGCATACAAGATATCT+AGG | 0.351989 | 8_2:-40690115 | Msa1247530:CDS |
GTGTAGTGGGAGGAGGAGGG+GGG | 0.362307 | 8_2:+40690829 | None:intergenic |
GTAGTAATTAAAGAGAATAT+TGG | 0.362727 | 8_2:-40687200 | Msa1247530:three_prime_UTR |
GAAGTACCTGAAGGGTTGTT+GGG | 0.369200 | 8_2:+40690804 | None:intergenic |
ACATCCAAAGGCGCAAATTC+CGG | 0.383906 | 8_2:+40690477 | None:intergenic |
GATAACTCTGCTTTAGATAC+AGG | 0.389017 | 8_2:+40688201 | None:intergenic |
TCTAAAACAACTAATCTAAC+AGG | 0.394762 | 8_2:+40687333 | None:intergenic |
GGGGTGTAGTGGGAGGAGGA+GGG | 0.394887 | 8_2:+40690826 | None:intergenic |
CAAAGGTGTGCCAACCTAGA+AGG | 0.402042 | 8_2:+40687518 | None:intergenic |
AACAATGCTAATCCAAGATA+TGG | 0.413675 | 8_2:-40687460 | Msa1247530:CDS |
CTTCAGTTTGCACCCTCTGT+TGG | 0.420665 | 8_2:-40690077 | Msa1247530:CDS |
CATGTTATCTGTGGATGAAA+TGG | 0.422705 | 8_2:-40689460 | Msa1247530:CDS |
TCGTAGTCTCCACCATATCT+TGG | 0.423400 | 8_2:+40687448 | None:intergenic |
ATATCTTAAATAAGTAATAA+GGG | 0.427384 | 8_2:-40687177 | Msa1247530:three_prime_UTR |
GTGTGATTAGCCTTGGTGCT+AGG | 0.434668 | 8_2:-40689434 | Msa1247530:CDS |
AACTGCAAATGAGACATTAT+CGG | 0.458033 | 8_2:+40691026 | None:intergenic |
AAGAAGAAACCAGAACCATC+TGG | 0.461026 | 8_2:+40688811 | None:intergenic |
AGTTGGAGCTTTGCCACCTA+GGG | 0.463185 | 8_2:-40690559 | Msa1247530:CDS |
GGCGCAAATTCCGGTGGTCT+AGG | 0.463296 | 8_2:+40690486 | None:intergenic |
TAGTTGGAGCTTTGCCACCT+AGG | 0.466878 | 8_2:-40690560 | Msa1247530:CDS |
AGAAGTACCTGAAGGGTTGT+TGG | 0.475238 | 8_2:+40690803 | None:intergenic |
TTGGTCCGCGTCAATATGAT+TGG | 0.481663 | 8_2:-40690058 | Msa1247530:CDS |
AGACTACGAATGGAACAGAT+AGG | 0.494279 | 8_2:-40687434 | Msa1247530:exon |
TCGGTCATTCCATTTACAAA+GGG | 0.496674 | 8_2:-40690530 | Msa1247530:CDS |
ATATGATTGGAATAGAAAAC+AGG | 0.497404 | 8_2:-40690045 | Msa1247530:intron |
TGTGATTAGCCTTGGTGCTA+GGG | 0.498610 | 8_2:-40689433 | Msa1247530:CDS |
GTGAAGGGTTTGAATTTGAA+AGG | 0.505474 | 8_2:+40690897 | None:intergenic |
AAACCAGAACCATCTGGAAA+AGG | 0.514518 | 8_2:+40688817 | None:intergenic |
AACTACCTTCCGCCTTTGAA+AGG | 0.515428 | 8_2:+40689387 | None:intergenic |
CTTTGCAAACTCCATAAATC+CGG | 0.519983 | 8_2:-40687500 | Msa1247530:CDS |
GTGTGCCAACCTAGAAGGTA+TGG | 0.520392 | 8_2:+40687523 | None:intergenic |
TGTTGTTTGTGAAAAGTTTG+AGG | 0.524480 | 8_2:+40690946 | None:intergenic |
GACTACGAATGGAACAGATA+GGG | 0.525583 | 8_2:-40687433 | Msa1247530:exon |
ATGTTATCTGTGGATGAAAT+GGG | 0.526542 | 8_2:-40689459 | Msa1247530:CDS |
GTTGTTTGTGAAAAGTTTGA+GGG | 0.535078 | 8_2:+40690947 | None:intergenic |
CGGATTTATGGAGTTTGCAA+AGG | 0.535912 | 8_2:+40687501 | None:intergenic |
CACTATCACTCCTAGACCAC+CGG | 0.536143 | 8_2:-40690496 | Msa1247530:CDS |
GTCGGTCATTCCATTTACAA+AGG | 0.538650 | 8_2:-40690531 | Msa1247530:CDS |
GTGATGGTGGCTGTGAGTGT+AGG | 0.547944 | 8_2:+40691000 | None:intergenic |
AAGTACCTGAAGGGTTGTTG+GGG | 0.551241 | 8_2:+40690805 | None:intergenic |
AGACGTCGGAGTGGCGGCAT+CGG | 0.552194 | 8_2:+40690871 | None:intergenic |
GAGATGGTGATGTTATTGCT+TGG | 0.554865 | 8_2:-40687282 | Msa1247530:three_prime_UTR |
TTCGCCGCTGCGGAATACTC+CGG | 0.560202 | 8_2:+40687481 | None:intergenic |
TGATGAAGGCAAAGTCAGAA+AGG | 0.570422 | 8_2:-40688854 | Msa1247530:CDS |
ACTACGAATGGAACAGATAG+GGG | 0.572940 | 8_2:-40687432 | Msa1247530:exon |
TCATGCCATACCTTCTAGGT+TGG | 0.573049 | 8_2:-40687528 | Msa1247530:CDS |
GGTTGAAGACGTCGGAGTGG+CGG | 0.579199 | 8_2:+40690865 | None:intergenic |
TCATTCCATTTACAAAGGGA+AGG | 0.581597 | 8_2:-40690526 | Msa1247530:CDS |
TTGCCACCTAGGGTTTATGT+CGG | 0.594634 | 8_2:-40690549 | Msa1247530:CDS |
ATTAGCATTGTTCGCCGCTG+CGG | 0.595298 | 8_2:+40687471 | None:intergenic |
ACGATTATACTTACATCCAA+AGG | 0.600307 | 8_2:+40690465 | None:intergenic |
GTGGCGGCATCGGATAGTGA+AGG | 0.602715 | 8_2:+40690881 | None:intergenic |
AATGCTAATCCAAGATATGG+TGG | 0.607036 | 8_2:-40687457 | Msa1247530:CDS |
ATGGGAAGTGTGATTAGCCT+TGG | 0.609938 | 8_2:-40689441 | Msa1247530:CDS |
ATGATCCTTTCAAAGGCGGA+AGG | 0.610678 | 8_2:-40689392 | Msa1247530:intron |
GAAGATGATGATGAGAGTGA+TGG | 0.611593 | 8_2:+40690984 | None:intergenic |
TTTCATGATCCTTTCAAAGG+CGG | 0.614878 | 8_2:-40689396 | Msa1247530:CDS |
ATATTGACGCGGACCAACAG+AGG | 0.625812 | 8_2:+40690064 | None:intergenic |
AGGGGCATACAAGATATCTA+GGG | 0.628813 | 8_2:-40690114 | Msa1247530:CDS |
AGTACCTGAAGGGTTGTTGG+GGG | 0.634191 | 8_2:+40690806 | None:intergenic |
GTACCTGAAGGGTTGTTGGG+GGG | 0.637107 | 8_2:+40690807 | None:intergenic |
CATGTTATGATTAGTGCGTG+TGG | 0.637115 | 8_2:-40687257 | Msa1247530:three_prime_UTR |
CTATTCCAATCATATTGACG+CGG | 0.644850 | 8_2:+40690053 | None:intergenic |
GAATGACCGACATAAACCCT+AGG | 0.646678 | 8_2:+40690543 | None:intergenic |
ATAACTCTGCTTTAGATACA+GGG | 0.647998 | 8_2:+40688202 | None:intergenic |
GCAGCTGTTCATGTTATCTG+TGG | 0.648047 | 8_2:-40689469 | Msa1247530:intron |
GATGATGATGAGAGTGATGG+TGG | 0.648589 | 8_2:+40690987 | None:intergenic |
TCCAAAGGCGCAAATTCCGG+TGG | 0.648910 | 8_2:+40690480 | None:intergenic |
AAGGGTTGAAGACGTCGGAG+TGG | 0.654367 | 8_2:+40690862 | None:intergenic |
TGGCGGCATCGGATAGTGAA+GGG | 0.656291 | 8_2:+40690882 | None:intergenic |
GATATGGTGGAGACTACGAA+TGG | 0.656703 | 8_2:-40687444 | Msa1247530:CDS |
TATTGACGCGGACCAACAGA+GGG | 0.660216 | 8_2:+40690065 | None:intergenic |
AGGGGAAGGGTTGAAGACGT+CGG | 0.662787 | 8_2:+40690857 | None:intergenic |
GCATACAAGATATCTAGGGA+TGG | 0.666950 | 8_2:-40690110 | Msa1247530:CDS |
CACAAGACTCCCTAGCACCA+AGG | 0.667591 | 8_2:+40689424 | None:intergenic |
CTACGAATGGAACAGATAGG+GGG | 0.691904 | 8_2:-40687431 | Msa1247530:exon |
TCAAGACAAAACTGTGAACG+TGG | 0.694913 | 8_2:-40688241 | Msa1247530:CDS |
TGACCGACATAAACCCTAGG+TGG | 0.701814 | 8_2:+40690546 | None:intergenic |
AAATCCGGAGTATTCCGCAG+CGG | 0.752636 | 8_2:-40687485 | Msa1247530:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAATTAATTATTAATTAATT+AGG | + | chr8_2:40689794-40689813 | None:intergenic | 0.0% |
!!! | AAAAAAAAATGAAACTTTTT+GGG | + | chr8_2:40687529-40687548 | None:intergenic | 10.0% |
!!! | AAAAAAAAAATGAAACTTTT+TGG | + | chr8_2:40687530-40687549 | None:intergenic | 10.0% |
!!! | AAAAGTTTCATTTTTTTTTT+TGG | - | chr8_2:40687530-40687549 | Msa1247530:CDS | 10.0% |
!!! | AATTTTTGTTTTAGAAATTT+TGG | - | chr8_2:40690941-40690960 | Msa1247530:CDS | 10.0% |
!! | ATATCTTAAATAAGTAATAA+GGG | - | chr8_2:40691074-40691093 | Msa1247530:five_prime_UTR | 10.0% |
!!! | AAAAAAAATGAAACTTTTTG+GGG | + | chr8_2:40687528-40687547 | None:intergenic | 15.0% |
!!! | TCATTTTTTTTTTTGGTTAT+TGG | - | chr8_2:40687537-40687556 | Msa1247530:intron | 15.0% |
!! | AAATGAAATATATCTAGATT+CGG | + | chr8_2:40689265-40689284 | None:intergenic | 15.0% |
!!! | TTATTATGGCATTTTTTTAA+AGG | - | chr8_2:40689984-40690003 | Msa1247530:intron | 15.0% |
!! | AAGAATCAAAAATATTAATC+AGG | + | chr8_2:40690690-40690709 | None:intergenic | 15.0% |
!! | GATATCTTAAATAAGTAATA+AGG | - | chr8_2:40691073-40691092 | Msa1247530:five_prime_UTR | 15.0% |
!! | ACTATAGATAATGAAATTGT+TGG | - | chr8_2:40687592-40687611 | Msa1247530:intron | 20.0% |
!!! | TACAAAGTGTTTTAAATTTG+CGG | - | chr8_2:40687913-40687932 | Msa1247530:intron | 20.0% |
!!! | AGAATTGAATGTTTTTAATG+TGG | - | chr8_2:40688090-40688109 | Msa1247530:intron | 20.0% |
!!! | TCAGTATTTTCAATTTGAAA+AGG | - | chr8_2:40689178-40689197 | Msa1247530:intron | 20.0% |
!!! | TTCATTTTATGTTTGTTGTA+TGG | - | chr8_2:40689278-40689297 | Msa1247530:intron | 20.0% |
!!! | TCATTTTATGTTTGTTGTAT+GGG | - | chr8_2:40689279-40689298 | Msa1247530:intron | 20.0% |
!! | TGATGCAAAAATTGAAAATA+AGG | + | chr8_2:40689495-40689514 | None:intergenic | 20.0% |
!! | ATAGATTATGGAGATATAAT+AGG | + | chr8_2:40689874-40689893 | None:intergenic | 20.0% |
!! | TTGAAAGATGATATAGATTA+TGG | + | chr8_2:40689886-40689905 | None:intergenic | 20.0% |
!! | GTAGTAATTAAAGAGAATAT+TGG | - | chr8_2:40691051-40691070 | Msa1247530:five_prime_UTR | 20.0% |
!!! | AAGCATGTTTTAGAGAAAAT+GGG | + | chr8_2:40687487-40687506 | None:intergenic | 25.0% |
!!! | AAAGCATGTTTTAGAGAAAA+TGG | + | chr8_2:40687488-40687507 | None:intergenic | 25.0% |
! | TTGTACTAAATCTCGTATAA+TGG | + | chr8_2:40687898-40687917 | None:intergenic | 25.0% |
!!! | TGACGGATGATTATTTATTT+TGG | - | chr8_2:40688016-40688035 | Msa1247530:intron | 25.0% |
! | ATATGATTGGAATAGAAAAC+AGG | - | chr8_2:40688206-40688225 | Msa1247530:CDS | 25.0% |
!!! | ATAGAAAACAGGTTAGTTTA+CGG | - | chr8_2:40688217-40688236 | Msa1247530:CDS | 25.0% |
! | TTCGAATCAAATAGCATAAA+TGG | + | chr8_2:40688330-40688349 | None:intergenic | 25.0% |
! | AAATACCATGTGATGAAATT+TGG | - | chr8_2:40688353-40688372 | Msa1247530:intron | 25.0% |
! | AATACCATGTGATGAAATTT+GGG | - | chr8_2:40688354-40688373 | Msa1247530:intron | 25.0% |
!!! | TCTATTAAGAGTGTTAATCT+TGG | - | chr8_2:40688387-40688406 | Msa1247530:intron | 25.0% |
!!! | TTTTTTCCAGTGTTGTTAAA+TGG | - | chr8_2:40688432-40688451 | Msa1247530:intron | 25.0% |
! | TTGTACAAAATAGCATATCA+TGG | + | chr8_2:40688509-40688528 | None:intergenic | 25.0% |
! | TAGCGAAATACAAAAAATAG+CGG | + | chr8_2:40688600-40688619 | None:intergenic | 25.0% |
!!! | TTTTTTCATGATCCTTTCAA+AGG | - | chr8_2:40688852-40688871 | Msa1247530:CDS | 25.0% |
!!! | ACTTCCTAATTGTTTTGTAA+TGG | - | chr8_2:40688896-40688915 | Msa1247530:intron | 25.0% |
!!! | CTTCCTAATTGTTTTGTAAT+GGG | - | chr8_2:40688897-40688916 | Msa1247530:intron | 25.0% |
! | AATCCCATTACAAAACAATT+AGG | + | chr8_2:40688903-40688922 | None:intergenic | 25.0% |
!! | ACTGCATAAAAAGACATTTT+CGG | + | chr8_2:40689378-40689397 | None:intergenic | 25.0% |
! | ATAATGATGCAACTTGAATA+TGG | + | chr8_2:40689539-40689558 | None:intergenic | 25.0% |
!! | TGATTTGTATTTATGATGAC+AGG | + | chr8_2:40689846-40689865 | None:intergenic | 25.0% |
! | AAAAATGCCATAATAAAGTC+AGG | + | chr8_2:40689980-40689999 | None:intergenic | 25.0% |
! | AAACTAACTCATCATCATTA+CGG | - | chr8_2:40690181-40690200 | Msa1247530:intron | 25.0% |
! | AGTGAATGAATAAACATAAC+AGG | + | chr8_2:40690579-40690598 | None:intergenic | 25.0% |
!! | TCTAAAACAACTAATCTAAC+AGG | + | chr8_2:40690921-40690940 | None:intergenic | 25.0% |
AACTGCAAATGAGACATTAT+CGG | + | chr8_2:40687228-40687247 | None:intergenic | 30.0% | |
GTTGTTTGTGAAAAGTTTGA+GGG | + | chr8_2:40687307-40687326 | None:intergenic | 30.0% | |
! | TGTTGTTTGTGAAAAGTTTG+AGG | + | chr8_2:40687308-40687327 | None:intergenic | 30.0% |
! | TTTGAAAGGAAGAGAGTTTT+TGG | + | chr8_2:40687343-40687362 | None:intergenic | 30.0% |
!! | TTTAGAGAAAATGGGTTAGA+GGG | + | chr8_2:40687479-40687498 | None:intergenic | 30.0% |
!!! | TTTTAGAGAAAATGGGTTAG+AGG | + | chr8_2:40687480-40687499 | None:intergenic | 30.0% |
TGACACTAGGAATTTGTAAA+GGG | - | chr8_2:40687619-40687638 | Msa1247530:intron | 30.0% | |
GGTTGTATTTGTTTGTGTAA+TGG | - | chr8_2:40687640-40687659 | Msa1247530:intron | 30.0% | |
TATTTGTGTGTGTGTTTAGT+TGG | - | chr8_2:40687675-40687694 | Msa1247530:intron | 30.0% | |
ACGATTATACTTACATCCAA+AGG | + | chr8_2:40687789-40687808 | None:intergenic | 30.0% | |
!! | TATTTTGGATTTGATTGTGC+TGG | - | chr8_2:40688031-40688050 | Msa1247530:intron | 30.0% |
! | GTTTTTAATGTGGAACGTTT+TGG | - | chr8_2:40688100-40688119 | Msa1247530:intron | 30.0% |
! | TTTTGGTGAATTTTGTAGTC+AGG | - | chr8_2:40688117-40688136 | Msa1247530:intron | 30.0% |
! | TTTGGTGAATTTTGTAGTCA+GGG | - | chr8_2:40688118-40688137 | Msa1247530:intron | 30.0% |
!! | TAGAAAACAGGTTAGTTTAC+GGG | - | chr8_2:40688218-40688237 | Msa1247530:CDS | 30.0% |
!! | TTTTCTGAAAACTTACGTCA+TGG | - | chr8_2:40688294-40688313 | Msa1247530:intron | 30.0% |
! | TTTCTGAAAACTTACGTCAT+GGG | - | chr8_2:40688295-40688314 | Msa1247530:intron | 30.0% |
!! | CAAACTCTATCAAGTTTTGT+TGG | + | chr8_2:40688643-40688662 | None:intergenic | 30.0% |
CTCTGATTATGATCTTTGTA+TGG | - | chr8_2:40688683-40688702 | Msa1247530:intron | 30.0% | |
!!! | TGATCTTTGTATGGTTTTGT+TGG | - | chr8_2:40688692-40688711 | Msa1247530:intron | 30.0% |
! | TTGTTTAAAATGTGACTGTG+AGG | - | chr8_2:40688737-40688756 | Msa1247530:intron | 30.0% |
ATGTTATCTGTGGATGAAAT+GGG | - | chr8_2:40688792-40688811 | Msa1247530:intron | 30.0% | |
AGCAGTAAAAATCTAAGCAA+TGG | + | chr8_2:40688947-40688966 | None:intergenic | 30.0% | |
TCTGTATGAACTGACATATA+TGG | + | chr8_2:40689066-40689085 | None:intergenic | 30.0% | |
! | TTTTATTGAACGTCCATATG+TGG | - | chr8_2:40689209-40689228 | Msa1247530:intron | 30.0% |
!!! | TTTTATGTTTGTTGTATGGG+TGG | - | chr8_2:40689282-40689301 | Msa1247530:intron | 30.0% |
ATGAAGAAAGAACATTACTG+AGG | + | chr8_2:40689469-40689488 | None:intergenic | 30.0% | |
TTGTACAGAACTGAATCAAT+CGG | + | chr8_2:40689723-40689742 | None:intergenic | 30.0% | |
TGATTCAGTTCTGTACAAAA+AGG | - | chr8_2:40689725-40689744 | Msa1247530:intron | 30.0% | |
TGCAGATATGGCATAAAAAT+AGG | + | chr8_2:40689913-40689932 | None:intergenic | 30.0% | |
!! | CTTCGTTTTTATTGCAGATA+TGG | + | chr8_2:40689925-40689944 | None:intergenic | 30.0% |
! | ATAACTCTGCTTTAGATACA+GGG | + | chr8_2:40690052-40690071 | None:intergenic | 30.0% |
ACATTGCAATTAGAAATCAG+AGG | + | chr8_2:40690107-40690126 | None:intergenic | 30.0% | |
AATACAGTGTTGTCAAATAG+CGG | - | chr8_2:40690375-40690394 | Msa1247530:intron | 30.0% | |
! | TTTTTCCGCAGTATACTATT+TGG | - | chr8_2:40690430-40690449 | Msa1247530:intron | 30.0% |
TAGTACCAAATAGTATACTG+CGG | + | chr8_2:40690438-40690457 | None:intergenic | 30.0% | |
AACAATGCTAATCCAAGATA+TGG | - | chr8_2:40690791-40690810 | Msa1247530:intron | 30.0% | |
!! | CATCTTTGAAATGTGCTAAA+TGG | - | chr8_2:40690889-40690908 | Msa1247530:CDS | 30.0% |
GTGAAGGGTTTGAATTTGAA+AGG | + | chr8_2:40687357-40687376 | None:intergenic | 35.0% | |
!! | TTAGAGAAAATGGGTTAGAG+GGG | + | chr8_2:40687478-40687497 | None:intergenic | 35.0% |
GTGACACTAGGAATTTGTAA+AGG | - | chr8_2:40687618-40687637 | Msa1247530:intron | 35.0% | |
!! | GTTTGTGTAATGGACTAACT+TGG | - | chr8_2:40687650-40687669 | Msa1247530:intron | 35.0% |
TCGGTCATTCCATTTACAAA+GGG | - | chr8_2:40687721-40687740 | Msa1247530:intron | 35.0% | |
TCATTCCATTTACAAAGGGA+AGG | - | chr8_2:40687725-40687744 | Msa1247530:intron | 35.0% | |
! | TTTTGTGATACGCGAAATTG+CGG | - | chr8_2:40687829-40687848 | Msa1247530:intron | 35.0% |
!! | GTGTTTTAAATTTGCGGCTA+TGG | - | chr8_2:40687919-40687938 | Msa1247530:intron | 35.0% |
! | TTTTAAATTTGCGGCTATGG+TGG | - | chr8_2:40687922-40687941 | Msa1247530:intron | 35.0% |
! | TTGGTGAATTTTGTAGTCAG+GGG | - | chr8_2:40688119-40688138 | Msa1247530:intron | 35.0% |
CTATTCCAATCATATTGACG+CGG | + | chr8_2:40688201-40688220 | None:intergenic | 35.0% | |
! | TTATATGATCTGACTTGTGC+TGG | - | chr8_2:40688271-40688290 | Msa1247530:intron | 35.0% |
! | TTTCCAGTGTTGTTAAATGG+CGG | - | chr8_2:40688435-40688454 | Msa1247530:intron | 35.0% |
CATGTTATCTGTGGATGAAA+TGG | - | chr8_2:40688791-40688810 | Msa1247530:intron | 35.0% | |
TTTCATGATCCTTTCAAAGG+CGG | - | chr8_2:40688855-40688874 | Msa1247530:CDS | 35.0% | |
! | CCTTATCGTTTTCTATGAGA+GGG | - | chr8_2:40688977-40688996 | Msa1247530:intron | 35.0% |
! | CTTATCGTTTTCTATGAGAG+GGG | - | chr8_2:40688978-40688997 | Msa1247530:intron | 35.0% |
TATGTCAGTTCATACAGATC+TGG | - | chr8_2:40689068-40689087 | Msa1247530:intron | 35.0% | |
ATGTCAGTTCATACAGATCT+GGG | - | chr8_2:40689069-40689088 | Msa1247530:intron | 35.0% | |
TTGATTGAACAGTCCAAATG+TGG | + | chr8_2:40689134-40689153 | None:intergenic | 35.0% | |
ACTGTTCAATCAAGATCACA+CGG | - | chr8_2:40689141-40689160 | Msa1247530:intron | 35.0% | |
! | GTCTTTTTATGCAGTGATGA+AGG | - | chr8_2:40689383-40689402 | Msa1247530:intron | 35.0% |
GATGCAACTTGAATATGGAA+AGG | + | chr8_2:40689534-40689553 | None:intergenic | 35.0% | |
! | GATAACTCTGCTTTAGATAC+AGG | + | chr8_2:40690053-40690072 | None:intergenic | 35.0% |
! | AGTTCTACGCTCAATTTTCA+AGG | - | chr8_2:40690073-40690092 | Msa1247530:CDS | 35.0% |
TGCAATTAGAAATCAGAGGT+AGG | + | chr8_2:40690103-40690122 | None:intergenic | 35.0% | |
! | ATTATCAGAGCATCACATCA+TGG | + | chr8_2:40690138-40690157 | None:intergenic | 35.0% |
GTGATGCTCTGATAATTCAA+TGG | - | chr8_2:40690142-40690161 | Msa1247530:intron | 35.0% | |
! | CAATGGAATTTGCTTGACAA+TGG | + | chr8_2:40690264-40690283 | None:intergenic | 35.0% |
AAAAAGACATGTACCTAGTG+TGG | + | chr8_2:40690292-40690311 | None:intergenic | 35.0% | |
! | TCACGGATTGCAAAAAATAG+CGG | + | chr8_2:40690515-40690534 | None:intergenic | 35.0% |
CTATTCAGTGTTGTCAATCA+CGG | + | chr8_2:40690532-40690551 | None:intergenic | 35.0% | |
ACATAGTAGTGCTTCAACAA+AGG | - | chr8_2:40690605-40690624 | Msa1247530:intron | 35.0% | |
TATATCATGCCATACCTTCT+AGG | - | chr8_2:40690719-40690738 | Msa1247530:intron | 35.0% | |
CTTTGCAAACTCCATAAATC+CGG | - | chr8_2:40690751-40690770 | Msa1247530:intron | 35.0% | |
AATGCTAATCCAAGATATGG+TGG | - | chr8_2:40690794-40690813 | Msa1247530:intron | 35.0% | |
!!! | AGAAATTTTGGCTCTTGAGA+TGG | - | chr8_2:40690953-40690972 | Msa1247530:CDS | 35.0% |
! | GAAGATGATGATGAGAGTGA+TGG | + | chr8_2:40687270-40687289 | None:intergenic | 40.0% |
!! | GGGAAAAAGAAGTACCTGAA+GGG | + | chr8_2:40687458-40687477 | None:intergenic | 40.0% |
! | AATTGTTGGTGAGTGACACT+AGG | - | chr8_2:40687606-40687625 | Msa1247530:intron | 40.0% |
GTCGGTCATTCCATTTACAA+AGG | - | chr8_2:40687720-40687739 | Msa1247530:intron | 40.0% | |
! | CTCGTATAATGGAACAATCG+CGG | + | chr8_2:40687887-40687906 | None:intergenic | 40.0% |
TTCCCAATTGACAATGCTGA+CGG | - | chr8_2:40687999-40688018 | Msa1247530:intron | 40.0% | |
ATCCGTCAGCATTGTCAATT+GGG | + | chr8_2:40688004-40688023 | None:intergenic | 40.0% | |
! | AGGGGCATACAAGATATCTA+GGG | - | chr8_2:40688137-40688156 | Msa1247530:intron | 40.0% |
GCATACAAGATATCTAGGGA+TGG | - | chr8_2:40688141-40688160 | Msa1247530:intron | 40.0% | |
TCGACCCAAATTTCATCACA+TGG | + | chr8_2:40688361-40688380 | None:intergenic | 40.0% | |
TATTTCGCTATTGACAGCAC+TGG | - | chr8_2:40688610-40688629 | Msa1247530:intron | 40.0% | |
! | GCCTTATCGTTTTCTATGAG+AGG | - | chr8_2:40688976-40688995 | Msa1247530:intron | 40.0% |
CCCTCTCATAGAAAACGATA+AGG | + | chr8_2:40688980-40688999 | None:intergenic | 40.0% | |
AACACATAGTCAGCCACATA+TGG | + | chr8_2:40689225-40689244 | None:intergenic | 40.0% | |
TGATGAAGGCAAAGTCAGAA+AGG | - | chr8_2:40689397-40689416 | Msa1247530:CDS | 40.0% | |
! | AAGATTGAGCCTTTTCCAGA+TGG | - | chr8_2:40689425-40689444 | Msa1247530:CDS | 40.0% |
AAACCAGAACCATCTGGAAA+AGG | + | chr8_2:40689437-40689456 | None:intergenic | 40.0% | |
AAGAAGAAACCAGAACCATC+TGG | + | chr8_2:40689443-40689462 | None:intergenic | 40.0% | |
CTCGAGTCCTGACTTTATTA+TGG | - | chr8_2:40689970-40689989 | Msa1247530:intron | 40.0% | |
TCAAGACAAAACTGTGAACG+TGG | - | chr8_2:40690010-40690029 | Msa1247530:intron | 40.0% | |
ACAACACTGAATAGCTCAAC+AGG | - | chr8_2:40690538-40690557 | Msa1247530:CDS | 40.0% | |
CGGATTTATGGAGTTTGCAA+AGG | + | chr8_2:40690753-40690772 | None:intergenic | 40.0% | |
AGACTACGAATGGAACAGAT+AGG | - | chr8_2:40690817-40690836 | Msa1247530:CDS | 40.0% | |
GACTACGAATGGAACAGATA+GGG | - | chr8_2:40690818-40690837 | Msa1247530:CDS | 40.0% | |
ACTACGAATGGAACAGATAG+GGG | - | chr8_2:40690819-40690838 | Msa1247530:CDS | 40.0% | |
! | GAGATGGTGATGTTATTGCT+TGG | - | chr8_2:40690969-40690988 | Msa1247530:CDS | 40.0% |
CATGTTATGATTAGTGCGTG+TGG | - | chr8_2:40690994-40691013 | Msa1247530:CDS | 40.0% | |
! | GATGATGATGAGAGTGATGG+TGG | + | chr8_2:40687267-40687286 | None:intergenic | 45.0% |
AAGTACCTGAAGGGTTGTTG+GGG | + | chr8_2:40687449-40687468 | None:intergenic | 45.0% | |
! | GAAGTACCTGAAGGGTTGTT+GGG | + | chr8_2:40687450-40687469 | None:intergenic | 45.0% |
!! | AGAAGTACCTGAAGGGTTGT+TGG | + | chr8_2:40687451-40687470 | None:intergenic | 45.0% |
!! | GGGGAAAAAGAAGTACCTGA+AGG | + | chr8_2:40687459-40687478 | None:intergenic | 45.0% |
TTGCCACCTAGGGTTTATGT+CGG | - | chr8_2:40687702-40687721 | Msa1247530:intron | 45.0% | |
GAATGACCGACATAAACCCT+AGG | + | chr8_2:40687711-40687730 | None:intergenic | 45.0% | |
AGCAGCCTTCCCTTTGTAAA+TGG | + | chr8_2:40687733-40687752 | None:intergenic | 45.0% | |
! | ACATCCAAAGGCGCAAATTC+CGG | + | chr8_2:40687777-40687796 | None:intergenic | 45.0% |
ACGCGAAATTGCGGCTATAA+TGG | - | chr8_2:40687838-40687857 | Msa1247530:intron | 45.0% | |
CATCCGTCAGCATTGTCAAT+TGG | + | chr8_2:40688005-40688024 | None:intergenic | 45.0% | |
! | CAGGGGCATACAAGATATCT+AGG | - | chr8_2:40688136-40688155 | Msa1247530:intron | 45.0% |
TTGGTCCGCGTCAATATGAT+TGG | - | chr8_2:40688193-40688212 | Msa1247530:CDS | 45.0% | |
!!! | ATGGTTTTGTTGGTGCTACG+AGG | - | chr8_2:40688702-40688721 | Msa1247530:intron | 45.0% |
!!! | TTTTGTTGGTGCTACGAGGT+TGG | - | chr8_2:40688706-40688725 | Msa1247530:intron | 45.0% |
GCAGCTGTTCATGTTATCTG+TGG | - | chr8_2:40688782-40688801 | Msa1247530:intron | 45.0% | |
!! | ATGGGAAGTGTGATTAGCCT+TGG | - | chr8_2:40688810-40688829 | Msa1247530:CDS | 45.0% |
!! | TGTGATTAGCCTTGGTGCTA+GGG | - | chr8_2:40688818-40688837 | Msa1247530:CDS | 45.0% |
ATGATCCTTTCAAAGGCGGA+AGG | - | chr8_2:40688859-40688878 | Msa1247530:intron | 45.0% | |
AACTACCTTCCGCCTTTGAA+AGG | + | chr8_2:40688867-40688886 | None:intergenic | 45.0% | |
! | GTTTTCTATGAGAGGGGACA+TGG | - | chr8_2:40688984-40689003 | Msa1247530:intron | 45.0% |
CAATCAAGATCACACGGTCT+AGG | - | chr8_2:40689147-40689166 | Msa1247530:intron | 45.0% | |
TCAAAACCTGTTCCCACATG+TGG | + | chr8_2:40689308-40689327 | None:intergenic | 45.0% | |
TTCCATTGTCTGACCACACT+AGG | - | chr8_2:40690276-40690295 | Msa1247530:intron | 45.0% | |
TACCTAGTGTGGTCAGACAA+TGG | + | chr8_2:40690281-40690300 | None:intergenic | 45.0% | |
TCATGCCATACCTTCTAGGT+TGG | - | chr8_2:40690723-40690742 | Msa1247530:intron | 45.0% | |
TGCGGAATACTCCGGATTTA+TGG | + | chr8_2:40690765-40690784 | None:intergenic | 45.0% | |
TCGTAGTCTCCACCATATCT+TGG | + | chr8_2:40690806-40690825 | None:intergenic | 45.0% | |
! | GATATGGTGGAGACTACGAA+TGG | - | chr8_2:40690807-40690826 | Msa1247530:intron | 45.0% |
CTACGAATGGAACAGATAGG+GGG | - | chr8_2:40690820-40690839 | Msa1247530:CDS | 45.0% | |
AGTACCTGAAGGGTTGTTGG+GGG | + | chr8_2:40687448-40687467 | None:intergenic | 50.0% | |
TAGTTGGAGCTTTGCCACCT+AGG | - | chr8_2:40687691-40687710 | Msa1247530:intron | 50.0% | |
AGTTGGAGCTTTGCCACCTA+GGG | - | chr8_2:40687692-40687711 | Msa1247530:intron | 50.0% | |
TGACCGACATAAACCCTAGG+TGG | + | chr8_2:40687708-40687727 | None:intergenic | 50.0% | |
CACTATCACTCCTAGACCAC+CGG | - | chr8_2:40687755-40687774 | Msa1247530:intron | 50.0% | |
CTTCAGTTTGCACCCTCTGT+TGG | - | chr8_2:40688174-40688193 | Msa1247530:intron | 50.0% | |
TATTGACGCGGACCAACAGA+GGG | + | chr8_2:40688189-40688208 | None:intergenic | 50.0% | |
ATATTGACGCGGACCAACAG+AGG | + | chr8_2:40688190-40688209 | None:intergenic | 50.0% | |
!! | GGTTAGTTTACGGGTGACGA+TGG | - | chr8_2:40688227-40688246 | Msa1247530:CDS | 50.0% |
GTGACTGTGAGGTCATCATC+TGG | - | chr8_2:40688748-40688767 | Msa1247530:intron | 50.0% | |
!! | GTGTGATTAGCCTTGGTGCT+AGG | - | chr8_2:40688817-40688836 | Msa1247530:CDS | 50.0% |
TGTACGCAGTCAGCCACATT+TGG | - | chr8_2:40689118-40689137 | Msa1247530:intron | 50.0% | |
TTGTATGGGTGGCCACATGT+GGG | - | chr8_2:40689293-40689312 | Msa1247530:intron | 50.0% | |
! | GAGCCTTTTCCAGATGGTTC+TGG | - | chr8_2:40689431-40689450 | Msa1247530:CDS | 50.0% |
GTGTGCCAACCTAGAAGGTA+TGG | + | chr8_2:40690731-40690750 | None:intergenic | 50.0% | |
! | CAAAGGTGTGCCAACCTAGA+AGG | + | chr8_2:40690736-40690755 | None:intergenic | 50.0% |
! | AAATCCGGAGTATTCCGCAG+CGG | - | chr8_2:40690766-40690785 | Msa1247530:intron | 50.0% |
ATTAGCATTGTTCGCCGCTG+CGG | + | chr8_2:40690783-40690802 | None:intergenic | 50.0% | |
!! | GTGATGGTGGCTGTGAGTGT+AGG | + | chr8_2:40687254-40687273 | None:intergenic | 55.0% |
! | TGGCGGCATCGGATAGTGAA+GGG | + | chr8_2:40687372-40687391 | None:intergenic | 55.0% |
AAGGGTTGAAGACGTCGGAG+TGG | + | chr8_2:40687392-40687411 | None:intergenic | 55.0% | |
AGGGGAAGGGTTGAAGACGT+CGG | + | chr8_2:40687397-40687416 | None:intergenic | 55.0% | |
GTACCTGAAGGGTTGTTGGG+GGG | + | chr8_2:40687447-40687466 | None:intergenic | 55.0% | |
ACCACCGGAATTTGCGCCTT+TGG | - | chr8_2:40687770-40687789 | Msa1247530:intron | 55.0% | |
! | TCCAAAGGCGCAAATTCCGG+TGG | + | chr8_2:40687774-40687793 | None:intergenic | 55.0% |
GCGCCGCCATTTAACAACAC+TGG | + | chr8_2:40688441-40688460 | None:intergenic | 55.0% | |
CACAAGACTCCCTAGCACCA+AGG | + | chr8_2:40688830-40688849 | None:intergenic | 55.0% | |
CTGACTGCGTACAGTCATGG+GGG | + | chr8_2:40689111-40689130 | None:intergenic | 55.0% | |
GCTGACTGCGTACAGTCATG+GGG | + | chr8_2:40689112-40689131 | None:intergenic | 55.0% | |
GGCTGACTGCGTACAGTCAT+GGG | + | chr8_2:40689113-40689132 | None:intergenic | 55.0% | |
TGGCTGACTGCGTACAGTCA+TGG | + | chr8_2:40689114-40689133 | None:intergenic | 55.0% | |
GTTGTATGGGTGGCCACATG+TGG | - | chr8_2:40689292-40689311 | Msa1247530:intron | 55.0% | |
! | GTGGCGGCATCGGATAGTGA+AGG | + | chr8_2:40687373-40687392 | None:intergenic | 60.0% |
GGTTGAAGACGTCGGAGTGG+CGG | + | chr8_2:40687389-40687408 | None:intergenic | 60.0% | |
! | TTGTTGGGGGGTGTAGTGGG+AGG | + | chr8_2:40687435-40687454 | None:intergenic | 60.0% |
! | GGGTTGTTGGGGGGTGTAGT+GGG | + | chr8_2:40687438-40687457 | None:intergenic | 60.0% |
! | AGGGTTGTTGGGGGGTGTAG+TGG | + | chr8_2:40687439-40687458 | None:intergenic | 60.0% |
ACACCCCCCAACAACCCTTC+AGG | - | chr8_2:40687441-40687460 | Msa1247530:CDS | 60.0% | |
GGCGCAAATTCCGGTGGTCT+AGG | + | chr8_2:40687768-40687787 | None:intergenic | 60.0% | |
TTCGCCGCTGCGGAATACTC+CGG | + | chr8_2:40690773-40690792 | None:intergenic | 60.0% | |
AGACGTCGGAGTGGCGGCAT+CGG | + | chr8_2:40687383-40687402 | None:intergenic | 65.0% | |
GAGGGGGGTTTGGAGGGGAA+GGG | + | chr8_2:40687410-40687429 | None:intergenic | 65.0% | |
AGGAGGAGGGGGGTTTGGAG+GGG | + | chr8_2:40687415-40687434 | None:intergenic | 65.0% | |
GAGGAGGAGGGGGGTTTGGA+GGG | + | chr8_2:40687416-40687435 | None:intergenic | 65.0% | |
! | GTGTAGTGGGAGGAGGAGGG+GGG | + | chr8_2:40687425-40687444 | None:intergenic | 65.0% |
! | GGTGTAGTGGGAGGAGGAGG+GGG | + | chr8_2:40687426-40687445 | None:intergenic | 65.0% |
! | GGGTGTAGTGGGAGGAGGAG+GGG | + | chr8_2:40687427-40687446 | None:intergenic | 65.0% |
! | GGGGTGTAGTGGGAGGAGGA+GGG | + | chr8_2:40687428-40687447 | None:intergenic | 65.0% |
! | TTGGGGGGTGTAGTGGGAGG+AGG | + | chr8_2:40687432-40687451 | None:intergenic | 65.0% |
GGGTGGCCACATGTGGGAAC+AGG | - | chr8_2:40689299-40689318 | Msa1247530:intron | 65.0% | |
GGAGGGGGGTTTGGAGGGGA+AGG | + | chr8_2:40687411-40687430 | None:intergenic | 70.0% | |
GGAGGAGGAGGGGGGTTTGG+AGG | + | chr8_2:40687417-40687436 | None:intergenic | 70.0% | |
GTGGGAGGAGGAGGGGGGTT+TGG | + | chr8_2:40687420-40687439 | None:intergenic | 70.0% | |
! | GGGGGTGTAGTGGGAGGAGG+AGG | + | chr8_2:40687429-40687448 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_2 | gene | 40687158 | 40691115 | 40687158 | ID=Msa1247530;Name=Msa1247530 |
chr8_2 | mRNA | 40687158 | 40691115 | 40687158 | ID=Msa1247530-mRNA-1;Parent=Msa1247530;Name=Msa1247530-mRNA-1;_AED=0.04;_eAED=0.04;_QI=73|1|1|1|1|1|7|277|267 |
chr8_2 | exon | 40687158 | 40687554 | 40687158 | ID=Msa1247530-mRNA-1:exon:12447;Parent=Msa1247530-mRNA-1 |
chr8_2 | exon | 40688179 | 40688267 | 40688179 | ID=Msa1247530-mRNA-1:exon:12446;Parent=Msa1247530-mRNA-1 |
chr8_2 | exon | 40688803 | 40688876 | 40688803 | ID=Msa1247530-mRNA-1:exon:12445;Parent=Msa1247530-mRNA-1 |
chr8_2 | exon | 40689393 | 40689487 | 40689393 | ID=Msa1247530-mRNA-1:exon:12444;Parent=Msa1247530-mRNA-1 |
chr8_2 | exon | 40690046 | 40690138 | 40690046 | ID=Msa1247530-mRNA-1:exon:12443;Parent=Msa1247530-mRNA-1 |
chr8_2 | exon | 40690479 | 40690579 | 40690479 | ID=Msa1247530-mRNA-1:exon:12442;Parent=Msa1247530-mRNA-1 |
chr8_2 | exon | 40690811 | 40691115 | 40690811 | ID=Msa1247530-mRNA-1:exon:12441;Parent=Msa1247530-mRNA-1 |
chr8_2 | five_prime_UTR | 40691043 | 40691115 | 40691043 | ID=Msa1247530-mRNA-1:five_prime_utr;Parent=Msa1247530-mRNA-1 |
chr8_2 | CDS | 40690811 | 40691042 | 40690811 | ID=Msa1247530-mRNA-1:cds;Parent=Msa1247530-mRNA-1 |
chr8_2 | CDS | 40690479 | 40690579 | 40690479 | ID=Msa1247530-mRNA-1:cds;Parent=Msa1247530-mRNA-1 |
chr8_2 | CDS | 40690046 | 40690138 | 40690046 | ID=Msa1247530-mRNA-1:cds;Parent=Msa1247530-mRNA-1 |
chr8_2 | CDS | 40689393 | 40689487 | 40689393 | ID=Msa1247530-mRNA-1:cds;Parent=Msa1247530-mRNA-1 |
chr8_2 | CDS | 40688803 | 40688876 | 40688803 | ID=Msa1247530-mRNA-1:cds;Parent=Msa1247530-mRNA-1 |
chr8_2 | CDS | 40688179 | 40688267 | 40688179 | ID=Msa1247530-mRNA-1:cds;Parent=Msa1247530-mRNA-1 |
chr8_2 | CDS | 40687435 | 40687554 | 40687435 | ID=Msa1247530-mRNA-1:cds;Parent=Msa1247530-mRNA-1 |
chr8_2 | three_prime_UTR | 40687158 | 40687434 | 40687158 | ID=Msa1247530-mRNA-1:three_prime_utr;Parent=Msa1247530-mRNA-1 |
Gene Sequence |
Protein sequence |