Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1247700 | XP_013445809.1 | 80.769 | 182 | 19 | 1 | 1 | 166 | 1 | 182 | 5.67e-97 | 291 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1247700 | sp|Q9LFQ3|SNL2_ARATH | 45.070 | 71 | 39 | 0 | 95 | 165 | 328 | 398 | 2.60e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1247700 | A0A072U246 | 80.769 | 182 | 19 | 1 | 1 | 166 | 1 | 182 | 2.71e-97 | 291 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1247700 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1247700 | MtrunA17_Chr8g0362641 | 80.769 | 182 | 19 | 1 | 1 | 166 | 1 | 182 | 5.21e-101 | 291 |
| Msa1247700 | MtrunA17_Chr8g0362641 | 43.243 | 74 | 42 | 0 | 95 | 168 | 192 | 265 | 3.00e-12 | 63.2 |
| Msa1247700 | MtrunA17_Chr8g0364231 | 44.118 | 102 | 49 | 1 | 73 | 166 | 304 | 405 | 7.42e-20 | 85.9 |
| Msa1247700 | MtrunA17_Chr6g0452021 | 37.589 | 141 | 50 | 2 | 63 | 165 | 203 | 343 | 3.67e-18 | 80.5 |
| Msa1247700 | MtrunA17_Chr6g0452001 | 49.296 | 71 | 36 | 0 | 95 | 165 | 340 | 410 | 4.18e-16 | 75.1 |
| Msa1247700 | MtrunA17_Chr5g0415031 | 47.887 | 71 | 35 | 1 | 99 | 167 | 324 | 394 | 8.35e-14 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1247700 | AT3G01320.2 | 41.250 | 80 | 47 | 0 | 86 | 165 | 311 | 390 | 1.89e-14 | 70.5 |
| Msa1247700 | AT5G15020.2 | 45.070 | 71 | 39 | 0 | 95 | 165 | 328 | 398 | 2.42e-14 | 70.1 |
| Msa1247700 | AT5G15020.1 | 45.070 | 71 | 39 | 0 | 95 | 165 | 328 | 398 | 2.64e-14 | 70.1 |
| Msa1247700 | AT3G01320.1 | 45.070 | 71 | 39 | 0 | 95 | 165 | 332 | 402 | 5.38e-14 | 69.3 |
Find 32 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTAGATAGCGTGGGGTGTT+TGG | 0.232710 | 8_2:-40806409 | None:intergenic |
| TTGAAAATCGTTGGCCTTCT+CGG | 0.340302 | 8_2:-40808850 | None:intergenic |
| GTAGATAGCGTGGGGTGTTT+GGG | 0.342132 | 8_2:-40806408 | None:intergenic |
| ACCTCTCTGTGACTTTGTTA+AGG | 0.415223 | 8_2:-40809204 | None:intergenic |
| TTTAACAAAGGTTTGATAAG+TGG | 0.421296 | 8_2:+40808912 | Msa1247700:intron |
| TTCATTAGGAATTTGTTTGT+CGG | 0.429830 | 8_2:+40808819 | Msa1247700:intron |
| CTTTCAGATAGGCGATTTGT+TGG | 0.441089 | 8_2:+40809551 | Msa1247700:intron |
| TTCCCATTCTGTAGCTATGT+AGG | 0.447539 | 8_2:-40809264 | None:intergenic |
| TCCCATTCTGTAGCTATGTA+GGG | 0.475220 | 8_2:-40809263 | None:intergenic |
| TTCTTGAAACAGAAATGAAA+AGG | 0.481600 | 8_2:+40806349 | None:intergenic |
| AAGGTAAGAAAACGCTTCAC+TGG | 0.486508 | 8_2:-40809185 | None:intergenic |
| GCGATCACCTTTCGTATCAA+TGG | 0.487977 | 8_2:-40808967 | None:intergenic |
| GTCCCTACATAGCTACAGAA+TGG | 0.496961 | 8_2:+40809261 | Msa1247700:CDS |
| TTTCAGATAGGCGATTTGTT+GGG | 0.503365 | 8_2:+40809552 | Msa1247700:intron |
| TCCCTACATAGCTACAGAAT+GGG | 0.512003 | 8_2:+40809262 | Msa1247700:CDS |
| AACAAAGTCACAGAGAGGTT+AGG | 0.530375 | 8_2:+40809208 | Msa1247700:CDS |
| ATCTTGTGTGGTAGATAGCG+TGG | 0.538989 | 8_2:-40806418 | None:intergenic |
| ATGATCACCTTGAAAATCGT+TGG | 0.554360 | 8_2:-40808859 | None:intergenic |
| TTGACACAATGTGAATCCAA+TGG | 0.569616 | 8_2:+40809612 | Msa1247700:CDS |
| GGGAAAACATTCTGATCTTG+TGG | 0.578356 | 8_2:+40809572 | Msa1247700:CDS |
| TCTTGTGTGGTAGATAGCGT+GGG | 0.586014 | 8_2:-40806417 | None:intergenic |
| CAAAGGTTTGATAAGTGGAG+AGG | 0.596544 | 8_2:+40808917 | Msa1247700:intron |
| AAACATTCTGATCTTGTGGA+GGG | 0.596716 | 8_2:+40809576 | Msa1247700:CDS |
| GATCAGGATGTTCGACAATG+AGG | 0.613657 | 8_2:-40808992 | None:intergenic |
| TGTCGGATTGAGTACCGAGA+AGG | 0.617157 | 8_2:+40808836 | Msa1247700:CDS |
| TCGAGAAGAACTACAAACAA+TGG | 0.623061 | 8_2:+40809294 | Msa1247700:CDS |
| AAAACATTCTGATCTTGTGG+AGG | 0.627867 | 8_2:+40809575 | Msa1247700:CDS |
| ATAAGTGGAGAGGTGTCTGA+TGG | 0.644265 | 8_2:+40808927 | Msa1247700:CDS |
| ACCTTAACAAAGTCACAGAG+AGG | 0.697804 | 8_2:+40809203 | Msa1247700:CDS |
| GACATGACCATTGATACGAA+AGG | 0.722401 | 8_2:+40808960 | Msa1247700:CDS |
| CTTGTGTGGTAGATAGCGTG+GGG | 0.766612 | 8_2:-40806416 | None:intergenic |
| AGAGAGGTTAGGAATACACG+AGG | 0.774426 | 8_2:+40809219 | Msa1247700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGAAGATTTTATATAATTA+GGG | - | chr8_2:40806648-40806667 | None:intergenic | 10.0% |
| !!! | ATTGAAGATTTTATATAATT+AGG | - | chr8_2:40806649-40806668 | None:intergenic | 10.0% |
| !!! | TTATATTTTCATATTCAAAA+TGG | - | chr8_2:40807340-40807359 | None:intergenic | 10.0% |
| !!! | AAATTTCAAATTTTATGAAT+GGG | - | chr8_2:40807549-40807568 | None:intergenic | 10.0% |
| !!! | AAAATTTCAAATTTTATGAA+TGG | - | chr8_2:40807550-40807569 | None:intergenic | 10.0% |
| !!! | GAAAATTTCTTTTTTATTTT+TGG | - | chr8_2:40808099-40808118 | None:intergenic | 10.0% |
| !! | TTAAATAAAAGTAAGTTATA+TGG | + | chr8_2:40809740-40809759 | Msa1247700:intron | 10.0% |
| !!! | ATTTCGTTTTATATTAATTC+TGG | + | chr8_2:40806494-40806513 | Msa1247700:intron | 15.0% |
| !!! | ACATTTTAGGATTTTTTTTA+AGG | + | chr8_2:40806724-40806743 | Msa1247700:intron | 15.0% |
| !! | AATAATGAAGAATAATTGTA+CGG | + | chr8_2:40807116-40807135 | Msa1247700:intron | 15.0% |
| !! | TGAATATGAAAATATAATCA+AGG | + | chr8_2:40807343-40807362 | Msa1247700:intron | 15.0% |
| !!! | CATTTTAAACTATTTTTGAA+AGG | - | chr8_2:40807502-40807521 | None:intergenic | 15.0% |
| !!! | AAAATTTGAAATTTTGAAAG+TGG | + | chr8_2:40807555-40807574 | Msa1247700:intron | 15.0% |
| !!! | AAATTTGAAATTTGTAATAC+TGG | + | chr8_2:40807627-40807646 | Msa1247700:intron | 15.0% |
| !! | TTATTTGTGATAAATTCAAA+CGG | + | chr8_2:40807746-40807765 | Msa1247700:intron | 15.0% |
| !! | CTTAGAATTATCATAATAAA+CGG | - | chr8_2:40808148-40808167 | None:intergenic | 15.0% |
| !! | TATTTAAGTGAATTCTAATT+AGG | + | chr8_2:40808437-40808456 | Msa1247700:intron | 15.0% |
| !! | TATTTAGTGATAAATAAATG+CGG | + | chr8_2:40808496-40808515 | Msa1247700:intron | 15.0% |
| !! | AAATTAAATTCAAGAGTTAT+AGG | - | chr8_2:40809378-40809397 | None:intergenic | 15.0% |
| !! | TATAACTCTTGAATTTAATT+TGG | + | chr8_2:40809377-40809396 | Msa1247700:intron | 15.0% |
| !! | TTTAACAATTATATAGAGTA+TGG | - | chr8_2:40809516-40809535 | None:intergenic | 15.0% |
| !!! | TAAGGTTCTTATTATTTTTC+TGG | + | chr8_2:40806766-40806785 | Msa1247700:intron | 20.0% |
| !! | TAAAAAATATTCTATCGTAG+TGG | - | chr8_2:40806926-40806945 | None:intergenic | 20.0% |
| !!! | TTTGTGAGAATTTTAACATA+GGG | - | chr8_2:40807027-40807046 | None:intergenic | 20.0% |
| !!! | ATTTTCATCATTGTTACTTA+AGG | - | chr8_2:40807086-40807105 | None:intergenic | 20.0% |
| !! | TTGAATCAGCAAATATTATT+TGG | - | chr8_2:40807283-40807302 | None:intergenic | 20.0% |
| !!! | GATCTGAAATATATTTATAG+AGG | + | chr8_2:40807447-40807466 | Msa1247700:intron | 20.0% |
| !!! | CATTTTTAAGCATATGTAAT+CGG | - | chr8_2:40807678-40807697 | None:intergenic | 20.0% |
| !!! | AGACTTTTAGATTATATTGT+GGG | - | chr8_2:40807846-40807865 | None:intergenic | 20.0% |
| !!! | AAGACTTTTAGATTATATTG+TGG | - | chr8_2:40807847-40807866 | None:intergenic | 20.0% |
| !! | CAATAAAAGAAGAAATACAA+AGG | - | chr8_2:40808384-40808403 | None:intergenic | 20.0% |
| !! | ATTTAGTGATAAATAAATGC+GGG | + | chr8_2:40808497-40808516 | Msa1247700:intron | 20.0% |
| !! | AACTATTGTAGCAATTAATA+AGG | + | chr8_2:40808532-40808551 | Msa1247700:intron | 20.0% |
| !! | ACTATTGTAGCAATTAATAA+GGG | + | chr8_2:40808533-40808552 | Msa1247700:intron | 20.0% |
| !! | AGAACATACTAATTATAATG+AGG | - | chr8_2:40808681-40808700 | None:intergenic | 20.0% |
| !!! | CTTTTAAATGCTTTTTCATT+AGG | + | chr8_2:40808805-40808824 | Msa1247700:intron | 20.0% |
| !!! | AAATGTAACTTCTGAAAATT+TGG | - | chr8_2:40809337-40809356 | None:intergenic | 20.0% |
| !!! | ATTTTCAGAAGTTACATTTT+TGG | + | chr8_2:40809338-40809357 | Msa1247700:intron | 20.0% |
| !!! | ATTTTGTTGAAGATAATCAA+CGG | + | chr8_2:40809471-40809490 | Msa1247700:intron | 20.0% |
| !! | ATTAGTTGTAAAATTACCAT+TGG | - | chr8_2:40809631-40809650 | None:intergenic | 20.0% |
| !!! | TTTAGGATTTTTTTTAAGGC+AGG | + | chr8_2:40806728-40806747 | Msa1247700:intron | 25.0% |
| !!! | AGGTTATTTTTGTGAGTTTA+AGG | + | chr8_2:40806748-40806767 | Msa1247700:intron | 25.0% |
| ! | ATGGACACAAGAAATTATAA+TGG | + | chr8_2:40806847-40806866 | Msa1247700:intron | 25.0% |
| ! | GTGCTATAGAAATATTGTTA+GGG | - | chr8_2:40806971-40806990 | None:intergenic | 25.0% |
| !! | ATTCTTGTTGTAAAGATAGT+GGG | - | chr8_2:40806994-40807013 | None:intergenic | 25.0% |
| !!! | GTTTGTGAGAATTTTAACAT+AGG | - | chr8_2:40807028-40807047 | None:intergenic | 25.0% |
| ! | TATCACTCTCAAATGAATAT+AGG | + | chr8_2:40807154-40807173 | Msa1247700:intron | 25.0% |
| ! | ATAATCAAGGTTTCACAAAA+TGG | + | chr8_2:40807356-40807375 | Msa1247700:intron | 25.0% |
| ! | GAAAAGACACAAATTTGAAA+TGG | + | chr8_2:40807521-40807540 | Msa1247700:intron | 25.0% |
| ! | AAATTTGTAATACTGGTAAC+TGG | + | chr8_2:40807634-40807653 | Msa1247700:intron | 25.0% |
| ! | GAAAAGAAGAAAAACTATTG+AGG | - | chr8_2:40807896-40807915 | None:intergenic | 25.0% |
| !! | TAGTTTTTCTTCTTTTCTGA+CGG | + | chr8_2:40807899-40807918 | Msa1247700:intron | 25.0% |
| !! | TTTTCACTATCCAAAATTCT+TGG | + | chr8_2:40808114-40808133 | Msa1247700:intron | 25.0% |
| ! | AGAATTATCATAATAAACGG+TGG | - | chr8_2:40808145-40808164 | None:intergenic | 25.0% |
| ! | TAAACAATTACGATCTACAA+CGG | + | chr8_2:40808309-40808328 | Msa1247700:intron | 25.0% |
| ! | TAACTTTAATGAGTTACACT+TGG | + | chr8_2:40808641-40808660 | Msa1247700:intron | 25.0% |
| ! | AATGTTGAATTCAGCTAAAA+GGG | - | chr8_2:40808751-40808770 | None:intergenic | 25.0% |
| !! | TTCATTAGGAATTTGTTTGT+CGG | + | chr8_2:40808819-40808838 | Msa1247700:intron | 25.0% |
| ! | ATCAAACCTTTGTTAAATTC+TGG | - | chr8_2:40808909-40808928 | None:intergenic | 25.0% |
| ! | TTTAACAAAGGTTTGATAAG+TGG | + | chr8_2:40808912-40808931 | Msa1247700:intron | 25.0% |
| !! | ATCAAACCTTTGTCAATTTT+TGG | - | chr8_2:40809017-40809036 | None:intergenic | 25.0% |
| !!! | GAAAAAAAGAAGTGTCATAA+AGG | + | chr8_2:40809059-40809078 | Msa1247700:CDS | 25.0% |
| ! | AACTACAAACAATGGTAATA+TGG | + | chr8_2:40809302-40809321 | Msa1247700:intron | 25.0% |
| !! | TTTTGTTGAAGATAATCAAC+GGG | + | chr8_2:40809472-40809491 | Msa1247700:intron | 25.0% |
| !! | AATGTCTTATTCTTTCAGAT+AGG | + | chr8_2:40809540-40809559 | Msa1247700:intron | 25.0% |
| ! | GTCAGCAACATCATTATTTT+TGG | - | chr8_2:40806376-40806395 | None:intergenic | 30.0% |
| AAAAACTTACGAATCTTGTG+TGG | - | chr8_2:40806433-40806452 | None:intergenic | 30.0% | |
| ! | ATTAGGTTTTCGGACATTTT+AGG | + | chr8_2:40806711-40806730 | Msa1247700:intron | 30.0% |
| ! | ATGCGAAAAATAAAGAGTGT+AGG | + | chr8_2:40806814-40806833 | Msa1247700:intron | 30.0% |
| ! | TGCGAAAAATAAAGAGTGTA+GGG | + | chr8_2:40806815-40806834 | Msa1247700:intron | 30.0% |
| ! | GGTGCTATAGAAATATTGTT+AGG | - | chr8_2:40806972-40806991 | None:intergenic | 30.0% |
| ! | TTCTTGTTGTAAAGATAGTG+GGG | - | chr8_2:40806993-40807012 | None:intergenic | 30.0% |
| ! | GATTCTTGTTGTAAAGATAG+TGG | - | chr8_2:40806995-40807014 | None:intergenic | 30.0% |
| GATTCTTGTTAAAGACAGTA+GGG | - | chr8_2:40807064-40807083 | None:intergenic | 30.0% | |
| ! | AGGAAAAAGAGTACAAGATA+GGG | - | chr8_2:40807225-40807244 | None:intergenic | 30.0% |
| TCAGCAAATATTATTTGGCT+AGG | - | chr8_2:40807278-40807297 | None:intergenic | 30.0% | |
| !! | GAAATTTTGAAAGTGGTAAC+CGG | + | chr8_2:40807562-40807581 | Msa1247700:intron | 30.0% |
| TAACAAATTACACCCCTATA+TGG | - | chr8_2:40807591-40807610 | None:intergenic | 30.0% | |
| GTAATCGGATACACATTATA+TGG | - | chr8_2:40807663-40807682 | None:intergenic | 30.0% | |
| TTATTAGACATTGCTTCACA+TGG | + | chr8_2:40807711-40807730 | Msa1247700:intron | 30.0% | |
| TATTAGACATTGCTTCACAT+GGG | + | chr8_2:40807712-40807731 | Msa1247700:intron | 30.0% | |
| ATCTTCATCTTAATTTCCTC+TGG | + | chr8_2:40807868-40807887 | Msa1247700:intron | 30.0% | |
| ! | AGTTTTTCTTCTTTTCTGAC+GGG | + | chr8_2:40807900-40807919 | Msa1247700:intron | 30.0% |
| ACGAATCTAAGTTCTATTCT+TGG | + | chr8_2:40808008-40808027 | Msa1247700:intron | 30.0% | |
| ATCTAAGTTCTATTCTTGGA+TGG | + | chr8_2:40808012-40808031 | Msa1247700:intron | 30.0% | |
| TCTTCAATTCTTAGTCAAAG+GGG | - | chr8_2:40808071-40808090 | None:intergenic | 30.0% | |
| CTCTTCAATTCTTAGTCAAA+GGG | - | chr8_2:40808072-40808091 | None:intergenic | 30.0% | |
| ACTCTTCAATTCTTAGTCAA+AGG | - | chr8_2:40808073-40808092 | None:intergenic | 30.0% | |
| ! | ATTCTAAGAGAACTTCTATG+TGG | + | chr8_2:40808160-40808179 | Msa1247700:intron | 30.0% |
| ATAAACCCAGTCAAAACAAT+TGG | + | chr8_2:40808340-40808359 | Msa1247700:intron | 30.0% | |
| CAAAGGAAGAGAATGAATTA+TGG | - | chr8_2:40808367-40808386 | None:intergenic | 30.0% | |
| CAATGTTGAATTCAGCTAAA+AGG | - | chr8_2:40808752-40808771 | None:intergenic | 30.0% | |
| GCTGAATTCAACATTGATAA+TGG | + | chr8_2:40808756-40808775 | Msa1247700:intron | 30.0% | |
| CTTGATCCAGAATTTAACAA+AGG | + | chr8_2:40808900-40808919 | Msa1247700:intron | 30.0% | |
| TTTGTTGAAGATAATCAACG+GGG | + | chr8_2:40809473-40809492 | Msa1247700:intron | 30.0% | |
| TTATATAGAGTATGGCTCAA+CGG | - | chr8_2:40809508-40809527 | None:intergenic | 30.0% | |
| !!! | ATAAAGTGTTGTTTTGCAGA+AGG | + | chr8_2:40809701-40809720 | Msa1247700:intron | 30.0% |
| TGCACTCTGAACTTATTGTT+TGG | - | chr8_2:40806677-40806696 | None:intergenic | 35.0% | |
| AATGGTTCCCTTCTAAACTA+AGG | + | chr8_2:40806865-40806884 | Msa1247700:intron | 35.0% | |
| ATGGTTCCCTTCTAAACTAA+GGG | + | chr8_2:40806866-40806885 | Msa1247700:intron | 35.0% | |
| GATTTGCCCTTAGTTTAGAA+GGG | - | chr8_2:40806875-40806894 | None:intergenic | 35.0% | |
| TTACAAGAAAACTTACCCCA+AGG | + | chr8_2:40806943-40806962 | Msa1247700:intron | 35.0% | |
| AAATATTGTTAGGGAGCCTT+GGG | - | chr8_2:40806962-40806981 | None:intergenic | 35.0% | |
| GGATTCTTGTTAAAGACAGT+AGG | - | chr8_2:40807065-40807084 | None:intergenic | 35.0% | |
| CACTCTCAAATGAATATAGG+AGG | + | chr8_2:40807157-40807176 | Msa1247700:intron | 35.0% | |
| !!! | GGTTTTTTAGTGAGCTTGAT+TGG | + | chr8_2:40807178-40807197 | Msa1247700:intron | 35.0% |
| ! | GGAAAAAGAGTACAAGATAG+GGG | - | chr8_2:40807224-40807243 | None:intergenic | 35.0% |
| ! | GAGGAAAAAGAGTACAAGAT+AGG | - | chr8_2:40807226-40807245 | None:intergenic | 35.0% |
| AAGATGTATTAAACCTGCGA+AGG | - | chr8_2:40807248-40807267 | None:intergenic | 35.0% | |
| ATTAGACATTGCTTCACATG+GGG | + | chr8_2:40807713-40807732 | Msa1247700:intron | 35.0% | |
| TGTGGGAATCATTGTAAGTA+TGG | - | chr8_2:40807829-40807848 | None:intergenic | 35.0% | |
| ! | GTTTTTCTTCTTTTCTGACG+GGG | + | chr8_2:40807901-40807920 | Msa1247700:intron | 35.0% |
| ! | TTTTTCTTCTTTTCTGACGG+GGG | + | chr8_2:40807902-40807921 | Msa1247700:intron | 35.0% |
| GAATATTTCCTTCGTAGACT+CGG | - | chr8_2:40807949-40807968 | None:intergenic | 35.0% | |
| CACAAACAATTGAGTTCAAG+TGG | + | chr8_2:40807973-40807992 | Msa1247700:intron | 35.0% | |
| AACAATCACTTATCGAACTC+CGG | + | chr8_2:40808035-40808054 | Msa1247700:intron | 35.0% | |
| AATTACGATCTACAACGGTT+TGG | + | chr8_2:40808314-40808333 | Msa1247700:intron | 35.0% | |
| !!! | ATGGTCCAATTGTTTTGACT+GGG | - | chr8_2:40808348-40808367 | None:intergenic | 35.0% |
| !!! | TATGGTCCAATTGTTTTGAC+TGG | - | chr8_2:40808349-40808368 | None:intergenic | 35.0% |
| TAATAAGGGATGCGCAAAAT+AGG | + | chr8_2:40808547-40808566 | Msa1247700:intron | 35.0% | |
| ATGATCACCTTGAAAATCGT+TGG | - | chr8_2:40808862-40808881 | None:intergenic | 35.0% | |
| !! | CCTTTGTCAATTTTTGGATC+AGG | - | chr8_2:40809011-40809030 | None:intergenic | 35.0% |
| CCTGATCCAAAAATTGACAA+AGG | + | chr8_2:40809008-40809027 | Msa1247700:CDS | 35.0% | |
| !! | AAGAAGTGTCATAAAGGTGA+AGG | + | chr8_2:40809065-40809084 | Msa1247700:intron | 35.0% |
| ! | GTAGGGACTTCTCAAATTTT+TGG | - | chr8_2:40809249-40809268 | None:intergenic | 35.0% |
| TCGAGAAGAACTACAAACAA+TGG | + | chr8_2:40809294-40809313 | Msa1247700:CDS | 35.0% | |
| ! | TTTCAGATAGGCGATTTGTT+GGG | + | chr8_2:40809552-40809571 | Msa1247700:intron | 35.0% |
| AAAACATTCTGATCTTGTGG+AGG | + | chr8_2:40809575-40809594 | Msa1247700:CDS | 35.0% | |
| AAACATTCTGATCTTGTGGA+GGG | + | chr8_2:40809576-40809595 | Msa1247700:CDS | 35.0% | |
| TTGACACAATGTGAATCCAA+TGG | + | chr8_2:40809612-40809631 | Msa1247700:CDS | 35.0% | |
| !! | TTTTGCGTCGCTTTATCTTT+AGG | + | chr8_2:40809778-40809797 | Msa1247700:intron | 35.0% |
| ATAAGTTCAGAGTGCAACCT+AGG | + | chr8_2:40806681-40806700 | Msa1247700:intron | 40.0% | |
| TAAGTTCAGAGTGCAACCTA+GGG | + | chr8_2:40806682-40806701 | Msa1247700:intron | 40.0% | |
| AAAACCTAATTCACCTCCCT+AGG | - | chr8_2:40806701-40806720 | None:intergenic | 40.0% | |
| ! | AGGGAGGTGAATTAGGTTTT+CGG | + | chr8_2:40806701-40806720 | Msa1247700:intron | 40.0% |
| GAGTGTAGGGAAGAGAAAAA+TGG | + | chr8_2:40806828-40806847 | Msa1247700:intron | 40.0% | |
| GGATTTGCCCTTAGTTTAGA+AGG | - | chr8_2:40806876-40806895 | None:intergenic | 40.0% | |
| ! | ATCGTAGTGGAATTCCTTCA+CGG | - | chr8_2:40806913-40806932 | None:intergenic | 40.0% |
| AATATTGTTAGGGAGCCTTG+GGG | - | chr8_2:40806961-40806980 | None:intergenic | 40.0% | |
| GAAATATTGTTAGGGAGCCT+TGG | - | chr8_2:40806963-40806982 | None:intergenic | 40.0% | |
| ! | TAGTGAGCTTGATTGGTGTT+TGG | + | chr8_2:40807185-40807204 | Msa1247700:intron | 40.0% |
| ! | AGTGAGCTTGATTGGTGTTT+GGG | + | chr8_2:40807186-40807205 | Msa1247700:intron | 40.0% |
| ATGTATTAAACCTGCGAAGG+AGG | - | chr8_2:40807245-40807264 | None:intergenic | 40.0% | |
| TGAAAGGTAGCATTGCTTCA+TGG | - | chr8_2:40807486-40807505 | None:intergenic | 40.0% | |
| TGGTAACCGGTTACCATATA+GGG | + | chr8_2:40807575-40807594 | Msa1247700:intron | 40.0% | |
| TTACACCCCTATATGGTAAC+CGG | - | chr8_2:40807584-40807603 | None:intergenic | 40.0% | |
| ! | AAAAACTATTGAGGCACCAG+AGG | - | chr8_2:40807887-40807906 | None:intergenic | 40.0% |
| TTATCGAACTCCGGATTACT+AGG | + | chr8_2:40808044-40808063 | Msa1247700:intron | 40.0% | |
| TATCGAACTCCGGATTACTA+GGG | + | chr8_2:40808045-40808064 | Msa1247700:intron | 40.0% | |
| ! | GGTGGAAACACCAAGAATTT+TGG | - | chr8_2:40808127-40808146 | None:intergenic | 40.0% |
| CGACTTAGCTCAATTACATG+TGG | + | chr8_2:40808201-40808220 | Msa1247700:intron | 40.0% | |
| !! | TTGAAAATCGTTGGCCTTCT+CGG | - | chr8_2:40808853-40808872 | None:intergenic | 40.0% |
| CAAAGGTTTGATAAGTGGAG+AGG | + | chr8_2:40808917-40808936 | Msa1247700:intron | 40.0% | |
| GACATGACCATTGATACGAA+AGG | + | chr8_2:40808960-40808979 | Msa1247700:CDS | 40.0% | |
| AAGGTAAGAAAACGCTTCAC+TGG | - | chr8_2:40809188-40809207 | None:intergenic | 40.0% | |
| ACCTTAACAAAGTCACAGAG+AGG | + | chr8_2:40809203-40809222 | Msa1247700:CDS | 40.0% | |
| ACCTCTCTGTGACTTTGTTA+AGG | - | chr8_2:40809207-40809226 | None:intergenic | 40.0% | |
| AACAAAGTCACAGAGAGGTT+AGG | + | chr8_2:40809208-40809227 | Msa1247700:CDS | 40.0% | |
| TCCCTACATAGCTACAGAAT+GGG | + | chr8_2:40809262-40809281 | Msa1247700:CDS | 40.0% | |
| TCCCATTCTGTAGCTATGTA+GGG | - | chr8_2:40809266-40809285 | None:intergenic | 40.0% | |
| TTCCCATTCTGTAGCTATGT+AGG | - | chr8_2:40809267-40809286 | None:intergenic | 40.0% | |
| CTTTCAGATAGGCGATTTGT+TGG | + | chr8_2:40809551-40809570 | Msa1247700:intron | 40.0% | |
| GGGAAAACATTCTGATCTTG+TGG | + | chr8_2:40809572-40809591 | Msa1247700:CDS | 40.0% | |
| TCTTGTGTGGTAGATAGCGT+GGG | - | chr8_2:40806420-40806439 | None:intergenic | 45.0% | |
| ATCTTGTGTGGTAGATAGCG+TGG | - | chr8_2:40806421-40806440 | None:intergenic | 45.0% | |
| ! | TCGTAGTGGAATTCCTTCAC+GGG | - | chr8_2:40806912-40806931 | None:intergenic | 45.0% |
| ! | TACTCTTTTTCCTCCTTCGC+AGG | + | chr8_2:40807232-40807251 | Msa1247700:intron | 45.0% |
| GTGGTAACCGGTTACCATAT+AGG | + | chr8_2:40807574-40807593 | Msa1247700:intron | 45.0% | |
| GGTAACCGGTTACCATATAG+GGG | + | chr8_2:40807576-40807595 | Msa1247700:intron | 45.0% | |
| AAACTCAACCGAGTCTACGA+AGG | + | chr8_2:40807938-40807957 | Msa1247700:intron | 45.0% | |
| ! | GAGAAGGCCAACGATTTTCA+AGG | + | chr8_2:40808852-40808871 | Msa1247700:CDS | 45.0% |
| !! | ATAAGTGGAGAGGTGTCTGA+TGG | + | chr8_2:40808927-40808946 | Msa1247700:CDS | 45.0% |
| GCGATCACCTTTCGTATCAA+TGG | - | chr8_2:40808970-40808989 | None:intergenic | 45.0% | |
| GATCAGGATGTTCGACAATG+AGG | - | chr8_2:40808995-40809014 | None:intergenic | 45.0% | |
| AGAGAGGTTAGGAATACACG+AGG | + | chr8_2:40809219-40809238 | Msa1247700:CDS | 45.0% | |
| GTCCCTACATAGCTACAGAA+TGG | + | chr8_2:40809261-40809280 | Msa1247700:CDS | 45.0% | |
| !!! | TAAAAAAAAAAGTATTTTAA+CGG | + | chr8_2:40808268-40808287 | Msa1247700:intron | 5.0% |
| !! | TTTAATTAAATTATAATCAA+TGG | - | chr8_2:40808606-40808625 | None:intergenic | 5.0% |
| !! | ATTGATTATAATTTAATTAA+AGG | + | chr8_2:40808605-40808624 | Msa1247700:intron | 5.0% |
| !! | TTATTAGAAATAATAATAAA+GGG | - | chr8_2:40809685-40809704 | None:intergenic | 5.0% |
| !! | TTTATTAGAAATAATAATAA+AGG | - | chr8_2:40809686-40809705 | None:intergenic | 5.0% |
| ! | GTAGATAGCGTGGGGTGTTT+GGG | - | chr8_2:40806411-40806430 | None:intergenic | 50.0% |
| CTTGTGTGGTAGATAGCGTG+GGG | - | chr8_2:40806419-40806438 | None:intergenic | 50.0% | |
| GCAACCTAGGGAGGTGAATT+AGG | + | chr8_2:40806694-40806713 | Msa1247700:intron | 50.0% | |
| ! | CGTAGTGGAATTCCTTCACG+GGG | - | chr8_2:40806911-40806930 | None:intergenic | 50.0% |
| TCAAAGGGGCCCTAGTAATC+CGG | - | chr8_2:40808057-40808076 | None:intergenic | 50.0% | |
| !! | TGTCGGATTGAGTACCGAGA+AGG | + | chr8_2:40808836-40808855 | Msa1247700:CDS | 50.0% |
| ! | GGTAGATAGCGTGGGGTGTT+TGG | - | chr8_2:40806412-40806431 | None:intergenic | 55.0% |
| GTTCAGAGTGCAACCTAGGG+AGG | + | chr8_2:40806685-40806704 | Msa1247700:intron | 55.0% | |
| ATTCCTTCACGGGGTGTGGA+GGG | - | chr8_2:40806902-40806921 | None:intergenic | 55.0% | |
| AATTCCTTCACGGGGTGTGG+AGG | - | chr8_2:40806903-40806922 | None:intergenic | 55.0% | |
| TGGAATTCCTTCACGGGGTG+TGG | - | chr8_2:40806906-40806925 | None:intergenic | 55.0% | |
| TTCACGGGGTGTGGAGGGAG+TGG | - | chr8_2:40806897-40806916 | None:intergenic | 65.0% | |
| ACTCCCTCCACACCCCGTGA+AGG | + | chr8_2:40806896-40806915 | Msa1247700:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 40806361 | 40809804 | 40806361 | ID=Msa1247700;Name=Msa1247700 |
| chr8_2 | mRNA | 40806361 | 40809804 | 40806361 | ID=Msa1247700-mRNA-1;Parent=Msa1247700;Name=Msa1247700-mRNA-1;_AED=0.11;_eAED=0.11;_QI=2|0|0|0.83|0.6|0.5|6|0|168 |
| chr8_2 | exon | 40806361 | 40806442 | 40806361 | ID=Msa1247700-mRNA-1:exon:12486;Parent=Msa1247700-mRNA-1 |
| chr8_2 | exon | 40808827 | 40808873 | 40808827 | ID=Msa1247700-mRNA-1:exon:12487;Parent=Msa1247700-mRNA-1 |
| chr8_2 | exon | 40808922 | 40809080 | 40808922 | ID=Msa1247700-mRNA-1:exon:12488;Parent=Msa1247700-mRNA-1 |
| chr8_2 | exon | 40809179 | 40809315 | 40809179 | ID=Msa1247700-mRNA-1:exon:12489;Parent=Msa1247700-mRNA-1 |
| chr8_2 | exon | 40809558 | 40809633 | 40809558 | ID=Msa1247700-mRNA-1:exon:12490;Parent=Msa1247700-mRNA-1 |
| chr8_2 | exon | 40809800 | 40809804 | 40809800 | ID=Msa1247700-mRNA-1:exon:12491;Parent=Msa1247700-mRNA-1 |
| chr8_2 | five_prime_UTR | 40806361 | 40806362 | 40806361 | ID=Msa1247700-mRNA-1:five_prime_utr;Parent=Msa1247700-mRNA-1 |
| chr8_2 | CDS | 40806363 | 40806442 | 40806363 | ID=Msa1247700-mRNA-1:cds;Parent=Msa1247700-mRNA-1 |
| chr8_2 | CDS | 40808827 | 40808873 | 40808827 | ID=Msa1247700-mRNA-1:cds;Parent=Msa1247700-mRNA-1 |
| chr8_2 | CDS | 40808922 | 40809080 | 40808922 | ID=Msa1247700-mRNA-1:cds;Parent=Msa1247700-mRNA-1 |
| chr8_2 | CDS | 40809179 | 40809315 | 40809179 | ID=Msa1247700-mRNA-1:cds;Parent=Msa1247700-mRNA-1 |
| chr8_2 | CDS | 40809558 | 40809633 | 40809558 | ID=Msa1247700-mRNA-1:cds;Parent=Msa1247700-mRNA-1 |
| chr8_2 | CDS | 40809800 | 40809804 | 40809800 | ID=Msa1247700-mRNA-1:cds;Parent=Msa1247700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
