Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1248280 | XP_013457545.1 | 78.571 | 98 | 15 | 1 | 1 | 98 | 1 | 92 | 6.21e-39 | 149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1248280 | sp|O04979|LONP2_SPIOL | 84.058 | 69 | 11 | 0 | 1 | 69 | 1 | 69 | 2.31e-31 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1248280 | A0A072UQE3 | 78.571 | 98 | 15 | 1 | 1 | 98 | 1 | 92 | 2.97e-39 | 149 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1248280 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1248280 | MtrunA17_Chr4g0055151 | 78.571 | 98 | 15 | 1 | 1 | 98 | 1 | 92 | 5.71e-43 | 149 |
| Msa1248280 | MtrunA17_Chr5g0400081 | 78.667 | 75 | 13 | 1 | 1 | 72 | 1 | 75 | 1.89e-32 | 119 |
| Msa1248280 | MtrunA17_Chr8g0374601 | 78.431 | 51 | 11 | 0 | 74 | 124 | 18 | 68 | 2.40e-24 | 94.0 |
| Msa1248280 | MtrunA17_Chr8g0374591 | 62.000 | 50 | 19 | 0 | 75 | 124 | 1 | 50 | 2.70e-16 | 69.7 |
| Msa1248280 | MtrunA17_Chr8g0374581 | 60.784 | 51 | 19 | 1 | 75 | 124 | 1 | 51 | 3.72e-15 | 68.9 |
| Msa1248280 | MtrunA17_Chr5g0402611 | 54.000 | 50 | 23 | 0 | 75 | 124 | 1 | 50 | 4.58e-13 | 63.9 |
| Msa1248280 | MtrunA17_Chr2g0326041 | 39.744 | 78 | 42 | 2 | 46 | 123 | 2 | 74 | 3.24e-12 | 58.2 |
| Msa1248280 | MtrunA17_Chr3g0097221 | 55.814 | 43 | 19 | 0 | 82 | 124 | 7 | 49 | 4.86e-12 | 61.2 |
| Msa1248280 | MtrunA17_Chr6g0449651 | 51.163 | 43 | 21 | 0 | 82 | 124 | 67 | 109 | 1.14e-11 | 58.9 |
| Msa1248280 | MtrunA17_Chr8g0353981 | 53.488 | 43 | 20 | 0 | 82 | 124 | 7 | 49 | 3.83e-11 | 58.2 |
| Msa1248280 | MtrunA17_Chr4g0055441 | 58.537 | 41 | 17 | 0 | 83 | 123 | 3 | 43 | 5.45e-11 | 56.6 |
| Msa1248280 | MtrunA17_Chr6g0449641 | 51.163 | 43 | 21 | 0 | 82 | 124 | 9 | 51 | 5.72e-11 | 56.2 |
| Msa1248280 | MtrunA17_Chr7g0227511 | 53.488 | 43 | 20 | 0 | 82 | 124 | 11 | 53 | 7.84e-11 | 56.2 |
| Msa1248280 | MtrunA17_Chr5g0432451 | 38.356 | 73 | 34 | 1 | 63 | 124 | 13 | 85 | 9.57e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1248280 | AT5G47040.1 | 86.765 | 68 | 9 | 0 | 1 | 68 | 1 | 68 | 3.81e-32 | 119 |
| Msa1248280 | AT3G27650.1 | 53.488 | 43 | 20 | 0 | 82 | 124 | 39 | 81 | 2.68e-11 | 57.8 |
| Msa1248280 | AT2G23660.2 | 54.545 | 44 | 20 | 0 | 81 | 124 | 4 | 47 | 3.02e-11 | 59.3 |
| Msa1248280 | AT2G23660.3 | 54.545 | 44 | 20 | 0 | 81 | 124 | 4 | 47 | 3.02e-11 | 59.3 |
| Msa1248280 | AT2G23660.1 | 54.545 | 44 | 20 | 0 | 81 | 124 | 4 | 47 | 3.02e-11 | 59.3 |
| Msa1248280 | AT1G65620.1 | 50.000 | 48 | 24 | 0 | 77 | 124 | 4 | 51 | 3.09e-11 | 58.2 |
| Msa1248280 | AT1G65620.4 | 50.000 | 48 | 24 | 0 | 77 | 124 | 4 | 51 | 3.09e-11 | 58.2 |
| Msa1248280 | AT1G65620.3 | 50.000 | 48 | 24 | 0 | 77 | 124 | 4 | 51 | 3.09e-11 | 58.2 |
| Msa1248280 | AT1G65620.5 | 50.000 | 48 | 24 | 0 | 77 | 124 | 4 | 51 | 3.09e-11 | 58.2 |
| Msa1248280 | AT1G65620.2 | 50.000 | 48 | 24 | 0 | 77 | 124 | 4 | 51 | 3.09e-11 | 58.2 |
| Msa1248280 | AT5G66870.1 | 53.488 | 43 | 20 | 0 | 82 | 124 | 7 | 49 | 8.22e-11 | 58.2 |
Find 45 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGAATATGATATATAAAT+AGG | 0.200318 | 8_2:+42008307 | None:intergenic |
| ATCAAGGCACACTCTTTGTT+TGG | 0.320412 | 8_2:+42009760 | Msa1248280:CDS |
| ATGAATATGATATATAAATA+GGG | 0.417776 | 8_2:+42008308 | None:intergenic |
| CTTCGTTGAGATGGCCGAAT+CGG | 0.419489 | 8_2:+42008414 | Msa1248280:exon |
| TGTTATCGCACGCACCTGCT+AGG | 0.443051 | 8_2:-42008523 | None:intergenic |
| GTCTGATTCCTTCGTTGAGA+TGG | 0.446296 | 8_2:+42008405 | Msa1248280:exon |
| ATGAAACGTTGCAGGTTGTC+AGG | 0.468648 | 8_2:-42009739 | None:intergenic |
| GTGCCTTGATGAAACGTTGC+AGG | 0.468909 | 8_2:-42009747 | None:intergenic |
| TGATGATAGCGCCTGGTAAG+AGG | 0.472730 | 8_2:-42008483 | None:intergenic |
| ACTCGGAAGTTCCACCGATT+CGG | 0.474309 | 8_2:-42008428 | None:intergenic |
| TCCGCTGCACTTCCCCTAGC+AGG | 0.479963 | 8_2:+42008509 | Msa1248280:CDS |
| AAAGAAGAGAAAGGGTTGAT+TGG | 0.486713 | 8_2:+42008762 | Msa1248280:CDS |
| CTTTGGCAGAAAGAAGAGAA+AGG | 0.497037 | 8_2:+42008753 | Msa1248280:CDS |
| GGACTTTGTTTCTGAAAGGA+AGG | 0.516413 | 8_2:-42008462 | None:intergenic |
| GCTCTTGAAATTAATTCAGC+GGG | 0.522960 | 8_2:+42008804 | Msa1248280:CDS |
| AGAAACAAAGTCCTCTTACC+AGG | 0.527118 | 8_2:+42008472 | Msa1248280:CDS |
| AGGTTGTCAGGTGGAAGGTA+AGG | 0.530635 | 8_2:-42009727 | None:intergenic |
| CGGATTCTGATGATAGCGCC+TGG | 0.536961 | 8_2:-42008490 | None:intergenic |
| AATATGATATATAAATAGGG+TGG | 0.540475 | 8_2:+42008311 | None:intergenic |
| CGTTGAGATGGCCGAATCGG+TGG | 0.547434 | 8_2:+42008417 | Msa1248280:exon |
| AAGAGGACTTTGTTTCTGAA+AGG | 0.549193 | 8_2:-42008466 | None:intergenic |
| TTGTTAATGAAGTGTGAAGT+TGG | 0.554342 | 8_2:+42008719 | Msa1248280:intron |
| AGTTGGTGGAACAAGAACTT+TGG | 0.556920 | 8_2:+42008736 | Msa1248280:CDS |
| AGCGTGCAAGCATCTCCGTC+GGG | 0.559906 | 8_2:+42009678 | Msa1248280:CDS |
| ACCTGCTAGGGGAAGTGCAG+CGG | 0.572072 | 8_2:-42008510 | None:intergenic |
| TTTGGCAGAAAGAAGAGAAA+GGG | 0.574512 | 8_2:+42008754 | Msa1248280:CDS |
| CAGCGTGCAAGCATCTCCGT+CGG | 0.579035 | 8_2:+42009677 | Msa1248280:CDS |
| AGATGCTTGCACGCTGTGCA+CGG | 0.586237 | 8_2:-42009670 | None:intergenic |
| ATTTCAAGAGCATCACGCAC+GGG | 0.587352 | 8_2:-42008792 | None:intergenic |
| GGAAGGATTGCTATGCGACT+CGG | 0.588355 | 8_2:-42008445 | None:intergenic |
| CAAGAGCATCACGCACGGGA+AGG | 0.596721 | 8_2:-42008788 | None:intergenic |
| TGCTCTTGAAATTAATTCAG+CGG | 0.598946 | 8_2:+42008803 | Msa1248280:CDS |
| GTTGCAGGTTGTCAGGTGGA+AGG | 0.606916 | 8_2:-42009732 | None:intergenic |
| AATTTCAAGAGCATCACGCA+CGG | 0.609649 | 8_2:-42008793 | None:intergenic |
| CAACCTGCAACGTTTCATCA+AGG | 0.613415 | 8_2:+42009744 | Msa1248280:CDS |
| TTAATGAAGTGTGAAGTTGG+TGG | 0.615443 | 8_2:+42008722 | Msa1248280:intron |
| AAACGTTGCAGGTTGTCAGG+TGG | 0.620328 | 8_2:-42009736 | None:intergenic |
| ATATGATATATAAATAGGGT+GGG | 0.627145 | 8_2:+42008312 | None:intergenic |
| TTATCGCACGCACCTGCTAG+GGG | 0.635399 | 8_2:-42008521 | None:intergenic |
| AACTTGAATCACACTCCCGA+CGG | 0.635717 | 8_2:-42009693 | None:intergenic |
| CAGGTGGAAGGTAAGGAGCA+AGG | 0.649619 | 8_2:-42009720 | None:intergenic |
| ATATCACCTTGAGATGCAGT+AGG | 0.657145 | 8_2:-42008828 | None:intergenic |
| GAATCAGACAAATTCAGCGG+AGG | 0.667768 | 8_2:-42008391 | None:intergenic |
| CGATTCGGCCATCTCAACGA+AGG | 0.688181 | 8_2:-42008413 | None:intergenic |
| AAGGAATCAGACAAATTCAG+CGG | 0.693658 | 8_2:-42008394 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAACATGTGATAAATAAAA+AGG | - | chr8_2:42008596-42008615 | None:intergenic | 15.0% |
| !! | TAAAACATTTATTACAACAA+AGG | - | chr8_2:42008960-42008979 | None:intergenic | 15.0% |
| !! | ATAGCATTTCATTATAAATA+GGG | + | chr8_2:42009297-42009316 | Msa1248280:intron | 15.0% |
| !!! | TTTTTAAAAATTTTGATCGT+TGG | + | chr8_2:42009450-42009469 | Msa1248280:intron | 15.0% |
| !! | ATAACATGTGATAAATAAAA+AGG | - | chr8_2:42008596-42008615 | None:intergenic | 15.0% |
| !! | TAAAACATTTATTACAACAA+AGG | - | chr8_2:42008960-42008979 | None:intergenic | 15.0% |
| !! | ATAGCATTTCATTATAAATA+GGG | + | chr8_2:42009297-42009316 | Msa1248280:intron | 15.0% |
| !!! | TTTTTAAAAATTTTGATCGT+TGG | + | chr8_2:42009450-42009469 | Msa1248280:intron | 15.0% |
| !!! | CTAACTCTTTTTTTTTTTGA+CGG | - | chr8_2:42008369-42008388 | None:intergenic | 20.0% |
| !! | GTGATAAATAAAAAGGAAAT+TGG | - | chr8_2:42008589-42008608 | None:intergenic | 20.0% |
| !! | TGTTTGATTGAAATAAAACT+GGG | + | chr8_2:42008867-42008886 | Msa1248280:intron | 20.0% |
| !!! | TAATAAATGTTTTATTGTGC+TGG | + | chr8_2:42008966-42008985 | Msa1248280:intron | 20.0% |
| !! | GATAGCATTTCATTATAAAT+AGG | + | chr8_2:42009296-42009315 | Msa1248280:intron | 20.0% |
| !!! | CTAACTCTTTTTTTTTTTGA+CGG | - | chr8_2:42008369-42008388 | None:intergenic | 20.0% |
| !! | GTGATAAATAAAAAGGAAAT+TGG | - | chr8_2:42008589-42008608 | None:intergenic | 20.0% |
| !! | TGTTTGATTGAAATAAAACT+GGG | + | chr8_2:42008867-42008886 | Msa1248280:intron | 20.0% |
| !!! | TAATAAATGTTTTATTGTGC+TGG | + | chr8_2:42008966-42008985 | Msa1248280:intron | 20.0% |
| !! | GATAGCATTTCATTATAAAT+AGG | + | chr8_2:42009296-42009315 | Msa1248280:intron | 20.0% |
| ! | GTGTTTGATTGAAATAAAAC+TGG | + | chr8_2:42008866-42008885 | Msa1248280:intron | 25.0% |
| ! | AAAAGAAGAAGCTTTACTTT+GGG | - | chr8_2:42009399-42009418 | None:intergenic | 25.0% |
| ! | CAAAATTGTTTAATATTGCG+TGG | + | chr8_2:42009511-42009530 | Msa1248280:intron | 25.0% |
| ! | GTTAATTTAATGTGCAGTAA+TGG | + | chr8_2:42009630-42009649 | Msa1248280:intron | 25.0% |
| ! | GTGTTTGATTGAAATAAAAC+TGG | + | chr8_2:42008866-42008885 | Msa1248280:intron | 25.0% |
| ! | AAAAGAAGAAGCTTTACTTT+GGG | - | chr8_2:42009399-42009418 | None:intergenic | 25.0% |
| ! | CAAAATTGTTTAATATTGCG+TGG | + | chr8_2:42009511-42009530 | Msa1248280:intron | 25.0% |
| ! | GTTAATTTAATGTGCAGTAA+TGG | + | chr8_2:42009630-42009649 | Msa1248280:intron | 25.0% |
| !!! | CTTTTTTTTTTTGACGGAAG+CGG | - | chr8_2:42008363-42008382 | None:intergenic | 30.0% |
| ACTTCACACTTCATTAACAA+AGG | - | chr8_2:42008719-42008738 | None:intergenic | 30.0% | |
| TTGTTAATGAAGTGTGAAGT+TGG | + | chr8_2:42008719-42008738 | Msa1248280:intron | 30.0% | |
| TGCTCTTGAAATTAATTCAG+CGG | + | chr8_2:42008803-42008822 | Msa1248280:CDS | 30.0% | |
| ! | TTTCAATCAAACACTTGTTG+AGG | - | chr8_2:42008860-42008879 | None:intergenic | 30.0% |
| TTGATTGAAATAAAACTGGG+AGG | + | chr8_2:42008870-42008889 | Msa1248280:intron | 30.0% | |
| ATGTAAACCAAACAAGAAGA+GGG | - | chr8_2:42008904-42008923 | None:intergenic | 30.0% | |
| ! | TCTTCTTGTTTGGTTTACAT+GGG | + | chr8_2:42008904-42008923 | Msa1248280:intron | 30.0% |
| !! | TAAATGTTTTATTGTGCTGG+TGG | + | chr8_2:42008969-42008988 | Msa1248280:intron | 30.0% |
| AAAGAAGAAGCTTTACTTTG+GGG | - | chr8_2:42009398-42009417 | None:intergenic | 30.0% | |
| GAAAAGAAGAAGCTTTACTT+TGG | - | chr8_2:42009400-42009419 | None:intergenic | 30.0% | |
| ATCAAAATTTCCAACGATCT+CGG | - | chr8_2:42009486-42009505 | None:intergenic | 30.0% | |
| !!! | CTTTTTTTTTTTGACGGAAG+CGG | - | chr8_2:42008363-42008382 | None:intergenic | 30.0% |
| ACTTCACACTTCATTAACAA+AGG | - | chr8_2:42008719-42008738 | None:intergenic | 30.0% | |
| TTGTTAATGAAGTGTGAAGT+TGG | + | chr8_2:42008719-42008738 | Msa1248280:intron | 30.0% | |
| TGCTCTTGAAATTAATTCAG+CGG | + | chr8_2:42008803-42008822 | Msa1248280:CDS | 30.0% | |
| ! | TTTCAATCAAACACTTGTTG+AGG | - | chr8_2:42008860-42008879 | None:intergenic | 30.0% |
| TTGATTGAAATAAAACTGGG+AGG | + | chr8_2:42008870-42008889 | Msa1248280:intron | 30.0% | |
| ATGTAAACCAAACAAGAAGA+GGG | - | chr8_2:42008904-42008923 | None:intergenic | 30.0% | |
| ! | TCTTCTTGTTTGGTTTACAT+GGG | + | chr8_2:42008904-42008923 | Msa1248280:intron | 30.0% |
| !! | TAAATGTTTTATTGTGCTGG+TGG | + | chr8_2:42008969-42008988 | Msa1248280:intron | 30.0% |
| AAAGAAGAAGCTTTACTTTG+GGG | - | chr8_2:42009398-42009417 | None:intergenic | 30.0% | |
| GAAAAGAAGAAGCTTTACTT+TGG | - | chr8_2:42009400-42009419 | None:intergenic | 30.0% | |
| ATCAAAATTTCCAACGATCT+CGG | - | chr8_2:42009486-42009505 | None:intergenic | 30.0% | |
| AAGGAATCAGACAAATTCAG+CGG | - | chr8_2:42008397-42008416 | None:intergenic | 35.0% | |
| !! | AAGAGGACTTTGTTTCTGAA+AGG | - | chr8_2:42008469-42008488 | None:intergenic | 35.0% |
| TTAATGAAGTGTGAAGTTGG+TGG | + | chr8_2:42008722-42008741 | Msa1248280:intron | 35.0% | |
| TTTGGCAGAAAGAAGAGAAA+GGG | + | chr8_2:42008754-42008773 | Msa1248280:CDS | 35.0% | |
| ! | AAAGAAGAGAAAGGGTTGAT+TGG | + | chr8_2:42008762-42008781 | Msa1248280:CDS | 35.0% |
| GCTCTTGAAATTAATTCAGC+GGG | + | chr8_2:42008804-42008823 | Msa1248280:CDS | 35.0% | |
| GAAATAACCCTCTTCTTGTT+TGG | + | chr8_2:42008894-42008913 | Msa1248280:intron | 35.0% | |
| CATGTAAACCAAACAAGAAG+AGG | - | chr8_2:42008905-42008924 | None:intergenic | 35.0% | |
| ! | CTCTTCTTGTTTGGTTTACA+TGG | + | chr8_2:42008903-42008922 | Msa1248280:intron | 35.0% |
| ! | CTTCTTGTTTGGTTTACATG+GGG | + | chr8_2:42008905-42008924 | Msa1248280:intron | 35.0% |
| ! | AGTGAAAGTAGTTTGGTAGT+AGG | + | chr8_2:42009010-42009029 | Msa1248280:intron | 35.0% |
| AAATTGATATCCGAGATCGT+TGG | + | chr8_2:42009473-42009492 | Msa1248280:intron | 35.0% | |
| AAGGAATCAGACAAATTCAG+CGG | - | chr8_2:42008397-42008416 | None:intergenic | 35.0% | |
| !! | AAGAGGACTTTGTTTCTGAA+AGG | - | chr8_2:42008469-42008488 | None:intergenic | 35.0% |
| TTAATGAAGTGTGAAGTTGG+TGG | + | chr8_2:42008722-42008741 | Msa1248280:intron | 35.0% | |
| TTTGGCAGAAAGAAGAGAAA+GGG | + | chr8_2:42008754-42008773 | Msa1248280:CDS | 35.0% | |
| ! | AAAGAAGAGAAAGGGTTGAT+TGG | + | chr8_2:42008762-42008781 | Msa1248280:CDS | 35.0% |
| GCTCTTGAAATTAATTCAGC+GGG | + | chr8_2:42008804-42008823 | Msa1248280:CDS | 35.0% | |
| GAAATAACCCTCTTCTTGTT+TGG | + | chr8_2:42008894-42008913 | Msa1248280:intron | 35.0% | |
| CATGTAAACCAAACAAGAAG+AGG | - | chr8_2:42008905-42008924 | None:intergenic | 35.0% | |
| ! | CTCTTCTTGTTTGGTTTACA+TGG | + | chr8_2:42008903-42008922 | Msa1248280:intron | 35.0% |
| ! | CTTCTTGTTTGGTTTACATG+GGG | + | chr8_2:42008905-42008924 | Msa1248280:intron | 35.0% |
| ! | AGTGAAAGTAGTTTGGTAGT+AGG | + | chr8_2:42009010-42009029 | Msa1248280:intron | 35.0% |
| AAATTGATATCCGAGATCGT+TGG | + | chr8_2:42009473-42009492 | Msa1248280:intron | 35.0% | |
| !!! | TTTTTTTTTGACGGAAGCGG+AGG | - | chr8_2:42008360-42008379 | None:intergenic | 40.0% |
| !! | GGACTTTGTTTCTGAAAGGA+AGG | - | chr8_2:42008465-42008484 | None:intergenic | 40.0% |
| AGAAACAAAGTCCTCTTACC+AGG | + | chr8_2:42008472-42008491 | Msa1248280:CDS | 40.0% | |
| CATTAACAAAGGAAACCGTC+AGG | - | chr8_2:42008708-42008727 | None:intergenic | 40.0% | |
| !! | AGTTGGTGGAACAAGAACTT+TGG | + | chr8_2:42008736-42008755 | Msa1248280:CDS | 40.0% |
| CTTTGGCAGAAAGAAGAGAA+AGG | + | chr8_2:42008753-42008772 | Msa1248280:CDS | 40.0% | |
| !! | AATTTCAAGAGCATCACGCA+CGG | - | chr8_2:42008796-42008815 | None:intergenic | 40.0% |
| ATATCACCTTGAGATGCAGT+AGG | - | chr8_2:42008831-42008850 | None:intergenic | 40.0% | |
| ! | TTGTTTGGTTTACATGGGGA+GGG | + | chr8_2:42008909-42008928 | Msa1248280:intron | 40.0% |
| !! | ATGTTTTATTGTGCTGGTGG+TGG | + | chr8_2:42008972-42008991 | Msa1248280:intron | 40.0% |
| GGTGTCAAGTGAAAGTAGTT+TGG | + | chr8_2:42009003-42009022 | Msa1248280:intron | 40.0% | |
| ! | GTAGTTTGGTAGTAGGAGTA+AGG | + | chr8_2:42009017-42009036 | Msa1248280:intron | 40.0% |
| TAGTAGGAGTAAGGCATATG+TGG | + | chr8_2:42009026-42009045 | Msa1248280:intron | 40.0% | |
| TAAGGCATATGTGGCAATAG+TGG | + | chr8_2:42009035-42009054 | Msa1248280:intron | 40.0% | |
| !! | ACCATATGAAGGGTGTCAAA+TGG | + | chr8_2:42009063-42009082 | Msa1248280:intron | 40.0% |
| ACCATTTGACACCCTTCATA+TGG | - | chr8_2:42009067-42009086 | None:intergenic | 40.0% | |
| ATGTGAAGTGGCAATAACAG+CGG | + | chr8_2:42009157-42009176 | Msa1248280:intron | 40.0% | |
| ! | AATAACAGCGGTGAAAGTGT+CGG | + | chr8_2:42009169-42009188 | Msa1248280:intron | 40.0% |
| ! | AAGAAGCTTTACTTTGGGGA+AGG | - | chr8_2:42009394-42009413 | None:intergenic | 40.0% |
| TAATATTGCGTGGCACTGTA+AGG | + | chr8_2:42009521-42009540 | Msa1248280:intron | 40.0% | |
| ATCAAGGCACACTCTTTGTT+TGG | + | chr8_2:42009760-42009779 | Msa1248280:CDS | 40.0% | |
| !!! | TTTTTTTTTGACGGAAGCGG+AGG | - | chr8_2:42008360-42008379 | None:intergenic | 40.0% |
| !! | GGACTTTGTTTCTGAAAGGA+AGG | - | chr8_2:42008465-42008484 | None:intergenic | 40.0% |
| AGAAACAAAGTCCTCTTACC+AGG | + | chr8_2:42008472-42008491 | Msa1248280:CDS | 40.0% | |
| CATTAACAAAGGAAACCGTC+AGG | - | chr8_2:42008708-42008727 | None:intergenic | 40.0% | |
| !! | AGTTGGTGGAACAAGAACTT+TGG | + | chr8_2:42008736-42008755 | Msa1248280:CDS | 40.0% |
| CTTTGGCAGAAAGAAGAGAA+AGG | + | chr8_2:42008753-42008772 | Msa1248280:CDS | 40.0% | |
| !! | AATTTCAAGAGCATCACGCA+CGG | - | chr8_2:42008796-42008815 | None:intergenic | 40.0% |
| ATATCACCTTGAGATGCAGT+AGG | - | chr8_2:42008831-42008850 | None:intergenic | 40.0% | |
| ! | TTGTTTGGTTTACATGGGGA+GGG | + | chr8_2:42008909-42008928 | Msa1248280:intron | 40.0% |
| !! | ATGTTTTATTGTGCTGGTGG+TGG | + | chr8_2:42008972-42008991 | Msa1248280:intron | 40.0% |
| GGTGTCAAGTGAAAGTAGTT+TGG | + | chr8_2:42009003-42009022 | Msa1248280:intron | 40.0% | |
| ! | GTAGTTTGGTAGTAGGAGTA+AGG | + | chr8_2:42009017-42009036 | Msa1248280:intron | 40.0% |
| TAGTAGGAGTAAGGCATATG+TGG | + | chr8_2:42009026-42009045 | Msa1248280:intron | 40.0% | |
| TAAGGCATATGTGGCAATAG+TGG | + | chr8_2:42009035-42009054 | Msa1248280:intron | 40.0% | |
| !! | ACCATATGAAGGGTGTCAAA+TGG | + | chr8_2:42009063-42009082 | Msa1248280:intron | 40.0% |
| ACCATTTGACACCCTTCATA+TGG | - | chr8_2:42009067-42009086 | None:intergenic | 40.0% | |
| ATGTGAAGTGGCAATAACAG+CGG | + | chr8_2:42009157-42009176 | Msa1248280:intron | 40.0% | |
| ! | AATAACAGCGGTGAAAGTGT+CGG | + | chr8_2:42009169-42009188 | Msa1248280:intron | 40.0% |
| ! | AAGAAGCTTTACTTTGGGGA+AGG | - | chr8_2:42009394-42009413 | None:intergenic | 40.0% |
| TAATATTGCGTGGCACTGTA+AGG | + | chr8_2:42009521-42009540 | Msa1248280:intron | 40.0% | |
| ATCAAGGCACACTCTTTGTT+TGG | + | chr8_2:42009760-42009779 | Msa1248280:CDS | 40.0% | |
| GAATCAGACAAATTCAGCGG+AGG | - | chr8_2:42008394-42008413 | None:intergenic | 45.0% | |
| GTCTGATTCCTTCGTTGAGA+TGG | + | chr8_2:42008405-42008424 | Msa1248280:exon | 45.0% | |
| TCTTCATGTACCATGCCTGA+CGG | + | chr8_2:42008690-42008709 | Msa1248280:intron | 45.0% | |
| !! | ATTTCAAGAGCATCACGCAC+GGG | - | chr8_2:42008795-42008814 | None:intergenic | 45.0% |
| ! | CTTGTTTGGTTTACATGGGG+AGG | + | chr8_2:42008908-42008927 | Msa1248280:intron | 45.0% |
| ! | TGTTTGGTTTACATGGGGAG+GGG | + | chr8_2:42008910-42008929 | Msa1248280:intron | 45.0% |
| ! | GCATATGTGGCAATAGTGGA+GGG | + | chr8_2:42009039-42009058 | Msa1248280:intron | 45.0% |
| !! | TAGTGGAGGGTACCATATGA+AGG | + | chr8_2:42009052-42009071 | Msa1248280:intron | 45.0% |
| !! | AGTGGAGGGTACCATATGAA+GGG | + | chr8_2:42009053-42009072 | Msa1248280:intron | 45.0% |
| GTGTCAAATGGTGACACTGA+TGG | + | chr8_2:42009075-42009094 | Msa1248280:intron | 45.0% | |
| TCAAATGGTGACACTGATGG+TGG | + | chr8_2:42009078-42009097 | Msa1248280:intron | 45.0% | |
| TTGGCGATGGAAATGTGAAG+TGG | + | chr8_2:42009145-42009164 | Msa1248280:intron | 45.0% | |
| AACTTGAATCACACTCCCGA+CGG | - | chr8_2:42009696-42009715 | None:intergenic | 45.0% | |
| ATGAAACGTTGCAGGTTGTC+AGG | - | chr8_2:42009742-42009761 | None:intergenic | 45.0% | |
| CAACCTGCAACGTTTCATCA+AGG | + | chr8_2:42009744-42009763 | Msa1248280:CDS | 45.0% | |
| GAATCAGACAAATTCAGCGG+AGG | - | chr8_2:42008394-42008413 | None:intergenic | 45.0% | |
| GTCTGATTCCTTCGTTGAGA+TGG | + | chr8_2:42008405-42008424 | Msa1248280:exon | 45.0% | |
| TCTTCATGTACCATGCCTGA+CGG | + | chr8_2:42008690-42008709 | Msa1248280:intron | 45.0% | |
| !! | ATTTCAAGAGCATCACGCAC+GGG | - | chr8_2:42008795-42008814 | None:intergenic | 45.0% |
| ! | CTTGTTTGGTTTACATGGGG+AGG | + | chr8_2:42008908-42008927 | Msa1248280:intron | 45.0% |
| ! | TGTTTGGTTTACATGGGGAG+GGG | + | chr8_2:42008910-42008929 | Msa1248280:intron | 45.0% |
| ! | GCATATGTGGCAATAGTGGA+GGG | + | chr8_2:42009039-42009058 | Msa1248280:intron | 45.0% |
| !! | TAGTGGAGGGTACCATATGA+AGG | + | chr8_2:42009052-42009071 | Msa1248280:intron | 45.0% |
| !! | AGTGGAGGGTACCATATGAA+GGG | + | chr8_2:42009053-42009072 | Msa1248280:intron | 45.0% |
| GTGTCAAATGGTGACACTGA+TGG | + | chr8_2:42009075-42009094 | Msa1248280:intron | 45.0% | |
| TCAAATGGTGACACTGATGG+TGG | + | chr8_2:42009078-42009097 | Msa1248280:intron | 45.0% | |
| TTGGCGATGGAAATGTGAAG+TGG | + | chr8_2:42009145-42009164 | Msa1248280:intron | 45.0% | |
| AACTTGAATCACACTCCCGA+CGG | - | chr8_2:42009696-42009715 | None:intergenic | 45.0% | |
| ATGAAACGTTGCAGGTTGTC+AGG | - | chr8_2:42009742-42009761 | None:intergenic | 45.0% | |
| CAACCTGCAACGTTTCATCA+AGG | + | chr8_2:42009744-42009763 | Msa1248280:CDS | 45.0% | |
| CTTCGTTGAGATGGCCGAAT+CGG | + | chr8_2:42008414-42008433 | Msa1248280:exon | 50.0% | |
| ! | ACTCGGAAGTTCCACCGATT+CGG | - | chr8_2:42008431-42008450 | None:intergenic | 50.0% |
| GGAAGGATTGCTATGCGACT+CGG | - | chr8_2:42008448-42008467 | None:intergenic | 50.0% | |
| ! | TGATGATAGCGCCTGGTAAG+AGG | - | chr8_2:42008486-42008505 | None:intergenic | 50.0% |
| ACAAAGGAAACCGTCAGGCA+TGG | - | chr8_2:42008703-42008722 | None:intergenic | 50.0% | |
| GGCATATGTGGCAATAGTGG+AGG | + | chr8_2:42009038-42009057 | Msa1248280:intron | 50.0% | |
| !! | AATGGTGACACTGATGGTGG+TGG | + | chr8_2:42009081-42009100 | Msa1248280:intron | 50.0% |
| !! | ATGGTGACACTGATGGTGGT+GGG | + | chr8_2:42009082-42009101 | Msa1248280:intron | 50.0% |
| TGGGTGTCAAACTGTAGCAG+TGG | + | chr8_2:42009101-42009120 | Msa1248280:intron | 50.0% | |
| GTGTCAAACTGTAGCAGTGG+AGG | + | chr8_2:42009104-42009123 | Msa1248280:intron | 50.0% | |
| TGTAGCAGTGGAGGTTGTCA+AGG | + | chr8_2:42009113-42009132 | Msa1248280:intron | 50.0% | |
| GTAGCAGTGGAGGTTGTCAA+GGG | + | chr8_2:42009114-42009133 | Msa1248280:intron | 50.0% | |
| TAGCAGTGGAGGTTGTCAAG+GGG | + | chr8_2:42009115-42009134 | Msa1248280:intron | 50.0% | |
| AGGTTGTCAGGTGGAAGGTA+AGG | - | chr8_2:42009730-42009749 | None:intergenic | 50.0% | |
| AAACGTTGCAGGTTGTCAGG+TGG | - | chr8_2:42009739-42009758 | None:intergenic | 50.0% | |
| GTGCCTTGATGAAACGTTGC+AGG | - | chr8_2:42009750-42009769 | None:intergenic | 50.0% | |
| CTTCGTTGAGATGGCCGAAT+CGG | + | chr8_2:42008414-42008433 | Msa1248280:exon | 50.0% | |
| ! | ACTCGGAAGTTCCACCGATT+CGG | - | chr8_2:42008431-42008450 | None:intergenic | 50.0% |
| GGAAGGATTGCTATGCGACT+CGG | - | chr8_2:42008448-42008467 | None:intergenic | 50.0% | |
| ! | TGATGATAGCGCCTGGTAAG+AGG | - | chr8_2:42008486-42008505 | None:intergenic | 50.0% |
| ACAAAGGAAACCGTCAGGCA+TGG | - | chr8_2:42008703-42008722 | None:intergenic | 50.0% | |
| GGCATATGTGGCAATAGTGG+AGG | + | chr8_2:42009038-42009057 | Msa1248280:intron | 50.0% | |
| !! | AATGGTGACACTGATGGTGG+TGG | + | chr8_2:42009081-42009100 | Msa1248280:intron | 50.0% |
| !! | ATGGTGACACTGATGGTGGT+GGG | + | chr8_2:42009082-42009101 | Msa1248280:intron | 50.0% |
| TGGGTGTCAAACTGTAGCAG+TGG | + | chr8_2:42009101-42009120 | Msa1248280:intron | 50.0% | |
| GTGTCAAACTGTAGCAGTGG+AGG | + | chr8_2:42009104-42009123 | Msa1248280:intron | 50.0% | |
| TGTAGCAGTGGAGGTTGTCA+AGG | + | chr8_2:42009113-42009132 | Msa1248280:intron | 50.0% | |
| GTAGCAGTGGAGGTTGTCAA+GGG | + | chr8_2:42009114-42009133 | Msa1248280:intron | 50.0% | |
| TAGCAGTGGAGGTTGTCAAG+GGG | + | chr8_2:42009115-42009134 | Msa1248280:intron | 50.0% | |
| AGGTTGTCAGGTGGAAGGTA+AGG | - | chr8_2:42009730-42009749 | None:intergenic | 50.0% | |
| AAACGTTGCAGGTTGTCAGG+TGG | - | chr8_2:42009739-42009758 | None:intergenic | 50.0% | |
| GTGCCTTGATGAAACGTTGC+AGG | - | chr8_2:42009750-42009769 | None:intergenic | 50.0% | |
| ! | CGATTCGGCCATCTCAACGA+AGG | - | chr8_2:42008416-42008435 | None:intergenic | 55.0% |
| ! | CGGATTCTGATGATAGCGCC+TGG | - | chr8_2:42008493-42008512 | None:intergenic | 55.0% |
| TTATCGCACGCACCTGCTAG+GGG | - | chr8_2:42008524-42008543 | None:intergenic | 55.0% | |
| GTTATCGCACGCACCTGCTA+GGG | - | chr8_2:42008525-42008544 | None:intergenic | 55.0% | |
| TGTTATCGCACGCACCTGCT+AGG | - | chr8_2:42008526-42008545 | None:intergenic | 55.0% | |
| TGGAGGTTGTCAAGGGGTAG+TGG | + | chr8_2:42009121-42009140 | Msa1248280:intron | 55.0% | |
| ! | GTTGTCAAGGGGTAGTGGCT+TGG | + | chr8_2:42009126-42009145 | Msa1248280:intron | 55.0% |
| AGATGCTTGCACGCTGTGCA+CGG | - | chr8_2:42009673-42009692 | None:intergenic | 55.0% | |
| CAGGTGGAAGGTAAGGAGCA+AGG | - | chr8_2:42009723-42009742 | None:intergenic | 55.0% | |
| GTTGCAGGTTGTCAGGTGGA+AGG | - | chr8_2:42009735-42009754 | None:intergenic | 55.0% | |
| ! | CGATTCGGCCATCTCAACGA+AGG | - | chr8_2:42008416-42008435 | None:intergenic | 55.0% |
| ! | CGGATTCTGATGATAGCGCC+TGG | - | chr8_2:42008493-42008512 | None:intergenic | 55.0% |
| TTATCGCACGCACCTGCTAG+GGG | - | chr8_2:42008524-42008543 | None:intergenic | 55.0% | |
| GTTATCGCACGCACCTGCTA+GGG | - | chr8_2:42008525-42008544 | None:intergenic | 55.0% | |
| TGTTATCGCACGCACCTGCT+AGG | - | chr8_2:42008526-42008545 | None:intergenic | 55.0% | |
| TGGAGGTTGTCAAGGGGTAG+TGG | + | chr8_2:42009121-42009140 | Msa1248280:intron | 55.0% | |
| ! | GTTGTCAAGGGGTAGTGGCT+TGG | + | chr8_2:42009126-42009145 | Msa1248280:intron | 55.0% |
| AGATGCTTGCACGCTGTGCA+CGG | - | chr8_2:42009673-42009692 | None:intergenic | 55.0% | |
| CAGGTGGAAGGTAAGGAGCA+AGG | - | chr8_2:42009723-42009742 | None:intergenic | 55.0% | |
| GTTGCAGGTTGTCAGGTGGA+AGG | - | chr8_2:42009735-42009754 | None:intergenic | 55.0% | |
| CGTTGAGATGGCCGAATCGG+TGG | + | chr8_2:42008417-42008436 | Msa1248280:exon | 60.0% | |
| ! | ACCTGCTAGGGGAAGTGCAG+CGG | - | chr8_2:42008513-42008532 | None:intergenic | 60.0% |
| !! | CAAGAGCATCACGCACGGGA+AGG | - | chr8_2:42008791-42008810 | None:intergenic | 60.0% |
| GCGGGTCCTACTGCATCTCA+AGG | + | chr8_2:42008822-42008841 | Msa1248280:CDS | 60.0% | |
| !! | TGTGCTGGTGGTGGTGCTGA+TGG | + | chr8_2:42008981-42009000 | Msa1248280:intron | 60.0% |
| !! | GTGCTGGTGGTGGTGCTGAT+GGG | + | chr8_2:42008982-42009001 | Msa1248280:intron | 60.0% |
| ! | AAGGGGTAGTGGCTTGGCGA+TGG | + | chr8_2:42009132-42009151 | Msa1248280:intron | 60.0% |
| CAGCGTGCAAGCATCTCCGT+CGG | + | chr8_2:42009677-42009696 | Msa1248280:CDS | 60.0% | |
| AGCGTGCAAGCATCTCCGTC+GGG | + | chr8_2:42009678-42009697 | Msa1248280:CDS | 60.0% | |
| CGTTGAGATGGCCGAATCGG+TGG | + | chr8_2:42008417-42008436 | Msa1248280:exon | 60.0% | |
| ! | ACCTGCTAGGGGAAGTGCAG+CGG | - | chr8_2:42008513-42008532 | None:intergenic | 60.0% |
| !! | CAAGAGCATCACGCACGGGA+AGG | - | chr8_2:42008791-42008810 | None:intergenic | 60.0% |
| GCGGGTCCTACTGCATCTCA+AGG | + | chr8_2:42008822-42008841 | Msa1248280:CDS | 60.0% | |
| !! | TGTGCTGGTGGTGGTGCTGA+TGG | + | chr8_2:42008981-42009000 | Msa1248280:intron | 60.0% |
| !! | GTGCTGGTGGTGGTGCTGAT+GGG | + | chr8_2:42008982-42009001 | Msa1248280:intron | 60.0% |
| ! | AAGGGGTAGTGGCTTGGCGA+TGG | + | chr8_2:42009132-42009151 | Msa1248280:intron | 60.0% |
| CAGCGTGCAAGCATCTCCGT+CGG | + | chr8_2:42009677-42009696 | Msa1248280:CDS | 60.0% | |
| AGCGTGCAAGCATCTCCGTC+GGG | + | chr8_2:42009678-42009697 | Msa1248280:CDS | 60.0% | |
| TCCGCTGCACTTCCCCTAGC+AGG | + | chr8_2:42008509-42008528 | Msa1248280:CDS | 65.0% | |
| TCCGCTGCACTTCCCCTAGC+AGG | + | chr8_2:42008509-42008528 | Msa1248280:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 42008318 | 42009801 | 42008318 | ID=Msa1248280;Name=Msa1248280 |
| chr8_2 | mRNA | 42008318 | 42009801 | 42008318 | ID=Msa1248280-mRNA-1;Parent=Msa1248280;Name=Msa1248280-mRNA-1;_AED=0.18;_eAED=0.18;_QI=106|0.5|0.33|0.66|1|1|3|0|124 |
| chr8_2 | exon | 42008318 | 42008530 | 42008318 | ID=Msa1248280-mRNA-1:exon:12788;Parent=Msa1248280-mRNA-1 |
| chr8_2 | exon | 42008731 | 42008843 | 42008731 | ID=Msa1248280-mRNA-1:exon:12789;Parent=Msa1248280-mRNA-1 |
| chr8_2 | exon | 42009647 | 42009801 | 42009647 | ID=Msa1248280-mRNA-1:exon:12790;Parent=Msa1248280-mRNA-1 |
| chr8_2 | five_prime_UTR | 42008318 | 42008423 | 42008318 | ID=Msa1248280-mRNA-1:five_prime_utr;Parent=Msa1248280-mRNA-1 |
| chr8_2 | CDS | 42008424 | 42008530 | 42008424 | ID=Msa1248280-mRNA-1:cds;Parent=Msa1248280-mRNA-1 |
| chr8_2 | CDS | 42008731 | 42008843 | 42008731 | ID=Msa1248280-mRNA-1:cds;Parent=Msa1248280-mRNA-1 |
| chr8_2 | CDS | 42009647 | 42009801 | 42009647 | ID=Msa1248280-mRNA-1:cds;Parent=Msa1248280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
