Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1249150 | XP_003628698.1 | 95.517 | 290 | 13 | 0 | 1 | 290 | 1 | 290 | 0.0 | 573 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1249150 | sp|Q9FNN6|SRM1_ARATH | 51.155 | 303 | 119 | 7 | 1 | 286 | 3 | 293 | 1.72e-88 | 268 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1249150 | G7I733 | 95.517 | 290 | 13 | 0 | 1 | 290 | 1 | 290 | 0.0 | 573 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1249150 | TF | MYB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1249150 | MtrunA17_Chr8g0364731 | 96.591 | 176 | 6 | 0 | 115 | 290 | 10 | 185 | 9.12e-123 | 348 |
| Msa1249150 | MtrunA17_Chr1g0162081 | 59.333 | 300 | 96 | 4 | 1 | 285 | 3 | 291 | 1.02e-115 | 335 |
| Msa1249150 | MtrunA17_Chr8g0365011 | 58.654 | 312 | 78 | 8 | 1 | 289 | 1 | 284 | 2.89e-110 | 320 |
| Msa1249150 | MtrunA17_Chr8g0364741 | 93.913 | 115 | 7 | 0 | 1 | 115 | 1 | 115 | 8.12e-77 | 229 |
| Msa1249150 | MtrunA17_Chr4g0062741 | 45.583 | 283 | 97 | 11 | 10 | 249 | 8 | 276 | 8.22e-65 | 205 |
| Msa1249150 | MtrunA17_Chr1g0210471 | 54.444 | 180 | 76 | 3 | 8 | 183 | 22 | 199 | 1.64e-53 | 174 |
| Msa1249150 | MtrunA17_Chr5g0436501 | 49.180 | 183 | 91 | 1 | 3 | 183 | 20 | 202 | 1.38e-52 | 173 |
| Msa1249150 | MtrunA17_Chr3g0104071 | 47.872 | 188 | 88 | 3 | 2 | 181 | 35 | 220 | 4.75e-52 | 173 |
| Msa1249150 | MtrunA17_Chr5g0429521 | 44.608 | 204 | 99 | 5 | 2 | 198 | 23 | 219 | 6.70e-51 | 169 |
| Msa1249150 | MtrunA17_Chr7g0241761 | 47.826 | 184 | 85 | 3 | 9 | 183 | 34 | 215 | 8.77e-49 | 164 |
| Msa1249150 | MtrunA17_Chr5g0432921 | 40.805 | 174 | 83 | 8 | 5 | 170 | 16 | 177 | 1.64e-26 | 103 |
| Msa1249150 | MtrunA17_Chr5g0432941 | 38.462 | 169 | 93 | 6 | 5 | 170 | 17 | 177 | 8.43e-26 | 102 |
| Msa1249150 | MtrunA17_Chr6g0488471 | 55.769 | 104 | 37 | 3 | 100 | 203 | 91 | 185 | 1.20e-25 | 103 |
| Msa1249150 | MtrunA17_Chr5g0440731 | 57.500 | 80 | 33 | 1 | 102 | 180 | 101 | 180 | 2.33e-25 | 102 |
| Msa1249150 | MtrunA17_Chr4g0055931 | 60.256 | 78 | 29 | 1 | 95 | 172 | 84 | 159 | 5.80e-25 | 102 |
| Msa1249150 | MtrunA17_Chr5g0440741 | 60.759 | 79 | 29 | 2 | 103 | 180 | 98 | 175 | 1.16e-24 | 100 |
| Msa1249150 | MtrunA17_Chr2g0331031 | 62.195 | 82 | 25 | 2 | 95 | 172 | 94 | 173 | 1.44e-24 | 101 |
| Msa1249150 | MtrunA17_Chr8g0389241 | 63.014 | 73 | 24 | 1 | 100 | 172 | 99 | 168 | 3.55e-24 | 99.0 |
| Msa1249150 | MtrunA17_Chr5g0409841 | 43.363 | 113 | 54 | 1 | 102 | 214 | 88 | 190 | 2.66e-23 | 95.5 |
| Msa1249150 | MtrunA17_Chr1g0155181 | 56.522 | 69 | 30 | 0 | 4 | 72 | 1 | 69 | 1.82e-21 | 86.3 |
| Msa1249150 | MtrunA17_Chr5g0415191 | 58.228 | 79 | 31 | 1 | 95 | 173 | 91 | 167 | 4.12e-20 | 88.6 |
| Msa1249150 | MtrunA17_Chr3g0144631 | 52.308 | 65 | 31 | 0 | 10 | 74 | 16 | 80 | 1.12e-19 | 81.6 |
| Msa1249150 | MtrunA17_Chr4g0059701 | 71.154 | 52 | 15 | 0 | 100 | 151 | 78 | 129 | 1.73e-19 | 86.3 |
| Msa1249150 | MtrunA17_Chr3g0141601 | 53.623 | 69 | 32 | 0 | 4 | 72 | 1 | 69 | 4.15e-19 | 80.1 |
| Msa1249150 | MtrunA17_Chr5g0409831 | 42.735 | 117 | 57 | 3 | 102 | 217 | 73 | 180 | 8.20e-19 | 83.2 |
| Msa1249150 | MtrunA17_Chr3g0135671 | 50.000 | 84 | 41 | 1 | 96 | 178 | 81 | 164 | 1.71e-18 | 82.4 |
| Msa1249150 | MtrunA17_Chr5g0404101 | 52.941 | 68 | 32 | 0 | 5 | 72 | 14 | 81 | 2.24e-17 | 75.9 |
| Msa1249150 | MtrunA17_Chr3g0092621 | 54.412 | 68 | 29 | 1 | 106 | 173 | 84 | 149 | 6.46e-17 | 76.6 |
| Msa1249150 | MtrunA17_Chr7g0255841 | 52.174 | 69 | 33 | 0 | 14 | 82 | 16 | 84 | 1.09e-16 | 73.9 |
| Msa1249150 | MtrunA17_Chr6g0449111 | 50.000 | 72 | 36 | 0 | 1 | 72 | 1 | 72 | 5.93e-16 | 71.2 |
| Msa1249150 | MtrunA17_Chr6g0452791 | 45.833 | 96 | 47 | 2 | 78 | 169 | 49 | 143 | 3.22e-15 | 72.0 |
| Msa1249150 | MtrunA17_Chr3g0081631 | 49.315 | 73 | 36 | 1 | 1 | 72 | 1 | 73 | 4.26e-15 | 69.3 |
| Msa1249150 | MtrunA17_Chr3g0113121 | 35.000 | 160 | 90 | 6 | 22 | 173 | 14 | 167 | 2.62e-13 | 67.8 |
| Msa1249150 | MtrunA17_Chr8g0373131 | 40.000 | 70 | 41 | 1 | 10 | 79 | 5 | 73 | 1.64e-12 | 62.0 |
| Msa1249150 | MtrunA17_Chr8g0373111 | 40.580 | 69 | 40 | 1 | 10 | 78 | 5 | 72 | 2.01e-12 | 61.6 |
| Msa1249150 | MtrunA17_Chr8g0373121 | 40.580 | 69 | 40 | 1 | 10 | 78 | 5 | 72 | 2.01e-12 | 61.6 |
| Msa1249150 | MtrunA17_Chr1g0192061 | 45.679 | 81 | 42 | 2 | 108 | 187 | 63 | 142 | 3.35e-12 | 63.9 |
| Msa1249150 | MtrunA17_Chr3g0141641 | 41.270 | 63 | 37 | 0 | 10 | 72 | 3 | 65 | 3.47e-12 | 61.6 |
| Msa1249150 | MtrunA17_Chr8g0373101 | 43.284 | 67 | 35 | 2 | 4 | 70 | 1 | 64 | 1.14e-11 | 59.7 |
| Msa1249150 | MtrunA17_Chr5g0404301 | 47.541 | 61 | 31 | 1 | 10 | 70 | 4 | 63 | 2.06e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1249150 | AT5G08520.1 | 51.155 | 303 | 119 | 7 | 1 | 286 | 3 | 293 | 1.75e-89 | 268 |
| Msa1249150 | AT5G23650.1 | 38.182 | 330 | 146 | 6 | 3 | 276 | 6 | 333 | 5.10e-59 | 192 |
| Msa1249150 | AT1G49010.1 | 41.489 | 282 | 115 | 9 | 10 | 254 | 8 | 276 | 1.55e-51 | 172 |
| Msa1249150 | AT5G04760.1 | 52.941 | 170 | 75 | 3 | 6 | 175 | 2 | 166 | 9.75e-51 | 166 |
| Msa1249150 | AT2G38090.1 | 47.826 | 184 | 78 | 3 | 8 | 175 | 27 | 208 | 2.72e-50 | 168 |
| Msa1249150 | AT5G58900.1 | 47.253 | 182 | 83 | 2 | 5 | 175 | 29 | 208 | 9.14e-50 | 166 |
| Msa1249150 | AT5G05790.2 | 47.568 | 185 | 85 | 5 | 7 | 183 | 28 | 208 | 1.38e-46 | 158 |
| Msa1249150 | AT5G05790.1 | 47.568 | 185 | 85 | 5 | 7 | 183 | 28 | 208 | 1.38e-46 | 158 |
| Msa1249150 | AT3G11280.2 | 50.610 | 164 | 77 | 2 | 10 | 173 | 33 | 192 | 3.77e-46 | 156 |
| Msa1249150 | AT3G11280.1 | 50.610 | 164 | 77 | 2 | 10 | 173 | 33 | 192 | 3.77e-46 | 156 |
| Msa1249150 | AT5G01200.1 | 44.086 | 186 | 82 | 5 | 10 | 175 | 30 | 213 | 1.48e-41 | 144 |
| Msa1249150 | AT3G10580.2 | 42.623 | 183 | 74 | 6 | 10 | 183 | 8 | 168 | 1.03e-35 | 129 |
| Msa1249150 | AT3G10580.1 | 42.623 | 183 | 74 | 6 | 10 | 183 | 8 | 168 | 1.91e-35 | 129 |
| Msa1249150 | AT4G09450.1 | 42.775 | 173 | 81 | 5 | 4 | 174 | 1 | 157 | 1.18e-32 | 119 |
| Msa1249150 | AT5G47390.1 | 57.732 | 97 | 39 | 1 | 84 | 180 | 74 | 168 | 6.05e-27 | 108 |
| Msa1249150 | AT5G56840.1 | 59.740 | 77 | 30 | 1 | 101 | 177 | 86 | 161 | 1.83e-22 | 93.6 |
| Msa1249150 | AT3G10590.1 | 35.829 | 187 | 93 | 8 | 4 | 174 | 1 | 176 | 1.56e-21 | 90.5 |
| Msa1249150 | AT5G61620.1 | 52.439 | 82 | 37 | 1 | 93 | 174 | 95 | 174 | 2.18e-20 | 89.7 |
| Msa1249150 | AT1G70000.1 | 67.797 | 59 | 19 | 0 | 95 | 153 | 87 | 145 | 5.07e-20 | 87.4 |
| Msa1249150 | AT1G70000.2 | 67.797 | 59 | 19 | 0 | 95 | 153 | 87 | 145 | 5.07e-20 | 87.4 |
| Msa1249150 | AT3G16350.1 | 61.429 | 70 | 19 | 1 | 84 | 153 | 123 | 184 | 7.93e-20 | 89.0 |
| Msa1249150 | AT4G39250.1 | 53.846 | 65 | 30 | 0 | 10 | 74 | 14 | 78 | 1.89e-19 | 81.6 |
| Msa1249150 | AT1G75250.2 | 51.429 | 70 | 34 | 0 | 10 | 79 | 12 | 81 | 5.25e-19 | 80.5 |
| Msa1249150 | AT1G75250.1 | 51.429 | 70 | 34 | 0 | 10 | 79 | 12 | 81 | 2.31e-18 | 79.7 |
| Msa1249150 | AT1G74840.2 | 70.588 | 51 | 15 | 0 | 101 | 151 | 91 | 141 | 6.53e-18 | 81.3 |
| Msa1249150 | AT1G74840.1 | 70.588 | 51 | 15 | 0 | 101 | 151 | 91 | 141 | 9.11e-18 | 81.6 |
| Msa1249150 | AT1G19000.2 | 61.667 | 60 | 23 | 0 | 92 | 151 | 88 | 147 | 2.34e-17 | 80.5 |
| Msa1249150 | AT1G19000.1 | 61.667 | 60 | 23 | 0 | 92 | 151 | 88 | 147 | 2.34e-17 | 80.5 |
| Msa1249150 | AT2G21650.1 | 50.000 | 72 | 36 | 0 | 10 | 81 | 14 | 85 | 3.00e-16 | 73.2 |
| Msa1249150 | AT2G18328.1 | 55.932 | 59 | 26 | 0 | 14 | 72 | 15 | 73 | 1.80e-15 | 70.5 |
| Msa1249150 | AT1G19510.1 | 46.377 | 69 | 37 | 0 | 14 | 82 | 16 | 84 | 2.84e-14 | 67.8 |
Find 87 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTTGCTTGACCGGTAAT+TGG | 0.261142 | 8_2:+43655911 | None:intergenic |
| TCACAGAACAATGGATGAAA+TGG | 0.332083 | 8_2:-43658676 | None:intergenic |
| GATATCAACCACATTGAATC+TGG | 0.363693 | 8_2:-43658495 | Msa1249150:CDS |
| GGCATAACTGTCTCAGAAAC+TGG | 0.395799 | 8_2:+43655680 | None:intergenic |
| CACCCCATCCATGGTTCTCC+AGG | 0.402855 | 8_2:+43656110 | None:intergenic |
| GGAGACATGGATTATGGTCT+TGG | 0.404056 | 8_2:-43655704 | Msa1249150:CDS |
| GCTCCCGGAGACATGGATTA+TGG | 0.405160 | 8_2:-43655710 | Msa1249150:CDS |
| CCATCGATCCACAGCGTCCT+CGG | 0.411794 | 8_2:+43658590 | None:intergenic |
| GCTGGAATACACGCTGCTCC+TGG | 0.421919 | 8_2:-43655794 | Msa1249150:CDS |
| TTGAACAGGCTATTTCTTCA+AGG | 0.422344 | 8_2:-43656133 | Msa1249150:intron |
| AGCAGAATTGCTTGCTTGAC+CGG | 0.425370 | 8_2:+43655904 | None:intergenic |
| TTGATTCCAGCAGGTGGGAC+TGG | 0.426711 | 8_2:+43655845 | None:intergenic |
| GATACAACTGGTCCTCCTAT+AGG | 0.431345 | 8_2:+43655761 | None:intergenic |
| TACACGCTGCTCCTGGGATC+GGG | 0.437370 | 8_2:-43655787 | Msa1249150:CDS |
| CCTGGGATCGGGCAACCTAT+AGG | 0.438438 | 8_2:-43655776 | Msa1249150:CDS |
| TGTATTCCAGCAGGTGGGGC+TGG | 0.439045 | 8_2:+43655806 | None:intergenic |
| GTCATAGGACCCAGGTTCAT+TGG | 0.445696 | 8_2:+43655650 | None:intergenic |
| GCACCTCAAGGACCAATTAC+CGG | 0.448210 | 8_2:-43655923 | Msa1249150:CDS |
| AATTCTGCTGCAAGTTCTGC+TGG | 0.448212 | 8_2:-43655890 | Msa1249150:CDS |
| AATCCTCCAGCCCCACCTGC+TGG | 0.449144 | 8_2:-43655812 | Msa1249150:CDS |
| CAGGCTATTTCTTCAAGGCC+TGG | 0.460201 | 8_2:-43656128 | Msa1249150:CDS |
| GCTCCTCCAGTCCCACCTGC+TGG | 0.465316 | 8_2:-43655851 | Msa1249150:CDS |
| CCCAGGTTCATTGGTACCCC+TGG | 0.466627 | 8_2:+43655659 | None:intergenic |
| TGGGACTGGAGGAGCTTGTT+CGG | 0.472434 | 8_2:+43655859 | None:intergenic |
| GTGAAGGAGGAGCTGTGAAA+AGG | 0.473544 | 8_2:-43658416 | Msa1249150:CDS |
| CACAGAACAATGGATGAAAT+GGG | 0.481775 | 8_2:-43658675 | None:intergenic |
| TGAAGGAGGAGCTGTGAAAA+GGG | 0.482163 | 8_2:-43658415 | Msa1249150:CDS |
| AGAACCATGGATGGGGTGAC+TGG | 0.483144 | 8_2:-43656105 | Msa1249150:CDS |
| CTGGAATACACGCTGCTCCT+GGG | 0.493957 | 8_2:-43655793 | Msa1249150:CDS |
| TTCTTATCAAGAACGGCGAA+AGG | 0.494765 | 8_2:-43658376 | Msa1249150:CDS |
| AACGGCGAAAGGGTGTTCCT+TGG | 0.495446 | 8_2:-43658365 | Msa1249150:CDS |
| ATACACGCTGCTCCTGGGAT+CGG | 0.497217 | 8_2:-43655788 | Msa1249150:CDS |
| GCCAGGGGTACCAATGAACC+TGG | 0.500745 | 8_2:-43655660 | Msa1249150:CDS |
| CATCGATCCACAGCGTCCTC+GGG | 0.504680 | 8_2:+43658591 | None:intergenic |
| AGCTGTGAAAAGGGGAGCTA+AGG | 0.515551 | 8_2:-43658406 | Msa1249150:CDS |
| GTACCAACTGCAGATACAAC+TGG | 0.516981 | 8_2:+43655749 | None:intergenic |
| CCTATAGGTTGCCCGATCCC+AGG | 0.518381 | 8_2:+43655776 | None:intergenic |
| TCAGAAATACAAAATTCGTC+AGG | 0.519592 | 8_2:-43656023 | Msa1249150:CDS |
| AAAGGTAACATCATGTATGC+TGG | 0.520807 | 8_2:+43655967 | None:intergenic |
| TGTTGCATGGCATATGTCAT+AGG | 0.522230 | 8_2:+43655635 | None:intergenic |
| AAAATCGCGGCTGATGTACC+CGG | 0.524444 | 8_2:-43658564 | Msa1249150:CDS |
| CAAAGCATTTGAAAATGCAT+TGG | 0.524922 | 8_2:-43658622 | Msa1249150:CDS |
| TGAAAGAGAAGAAAGAAAGA+AGG | 0.525485 | 8_2:-43655994 | Msa1249150:CDS |
| CCGGGAGCAGTAAAATTCAC+TGG | 0.526088 | 8_2:+43655725 | None:intergenic |
| ATTCCAGCAGGTGGGGCTGG+AGG | 0.527139 | 8_2:+43655809 | None:intergenic |
| AGCGTGTATTCCAGCAGGTG+GGG | 0.532991 | 8_2:+43655802 | None:intergenic |
| GCATGGCTTGCTACTTGTGT+AGG | 0.536057 | 8_2:+43656046 | None:intergenic |
| AAGACCATAATCCATGTCTC+CGG | 0.538089 | 8_2:+43655706 | None:intergenic |
| CAGCGTGTATTCCAGCAGGT+GGG | 0.540781 | 8_2:+43655801 | None:intergenic |
| GGAGCAGCGTGTATTCCAGC+AGG | 0.541289 | 8_2:+43655797 | None:intergenic |
| CTATGTTCATCTTCCGTCCA+AGG | 0.545058 | 8_2:+43658348 | None:intergenic |
| GTTTCTGAGACAGTTATGCC+AGG | 0.548613 | 8_2:-43655677 | Msa1249150:CDS |
| GCAGCGTGTATTCCAGCAGG+TGG | 0.551793 | 8_2:+43655800 | None:intergenic |
| AAGAGTTCAACAAAGCGTAC+TGG | 0.557383 | 8_2:-43658438 | Msa1249150:CDS |
| AAGGCCTGGAGAACCATGGA+TGG | 0.559427 | 8_2:-43656114 | Msa1249150:CDS |
| AGACCATAATCCATGTCTCC+GGG | 0.563041 | 8_2:+43655707 | None:intergenic |
| TCAACAAAGCGTACTGGTGA+AGG | 0.564550 | 8_2:-43658432 | Msa1249150:CDS |
| CGAGGACGCTGTGGATCGAT+GGG | 0.568594 | 8_2:-43658589 | Msa1249150:CDS |
| CTTGGACGGAAGATGAACAT+AGG | 0.569094 | 8_2:-43658347 | Msa1249150:intron |
| TTCGCCAGTCACCCCATCCA+TGG | 0.577904 | 8_2:+43656101 | None:intergenic |
| ATTCCAGCAGGTGGGACTGG+AGG | 0.578008 | 8_2:+43655848 | None:intergenic |
| GCGAAAGGGTGTTCCTTGGA+CGG | 0.581376 | 8_2:-43658361 | Msa1249150:CDS |
| AGGCCTGGAGAACCATGGAT+GGG | 0.582995 | 8_2:-43656113 | Msa1249150:CDS |
| TCTTATCAAGAACGGCGAAA+GGG | 0.585934 | 8_2:-43658375 | Msa1249150:CDS |
| AAAGAATCATAATCTGGCAG+AGG | 0.587497 | 8_2:+43658465 | None:intergenic |
| CTTCGAGTTCTTATCAAGAA+CGG | 0.593298 | 8_2:-43658383 | Msa1249150:CDS |
| TTTCTGAGACAGTTATGCCA+GGG | 0.595865 | 8_2:-43655676 | Msa1249150:CDS |
| GGACCAGTTGTATCTGCAGT+TGG | 0.597989 | 8_2:-43655752 | Msa1249150:CDS |
| AGAGATTAAGCGTCACTATG+TGG | 0.598823 | 8_2:-43658529 | Msa1249150:CDS |
| CTTCAAGGCCTGGAGAACCA+TGG | 0.600275 | 8_2:-43656118 | Msa1249150:CDS |
| GTGACTGGCGAAGTATATCA+AGG | 0.602104 | 8_2:-43656090 | Msa1249150:CDS |
| GGCCTGGAGAACCATGGATG+GGG | 0.620882 | 8_2:-43656112 | Msa1249150:CDS |
| AAATCGCGGCTGATGTACCC+GGG | 0.624584 | 8_2:-43658563 | Msa1249150:CDS |
| AAATGGGTAGCAGCTGTGAG+TGG | 0.631015 | 8_2:-43658659 | Msa1249150:CDS |
| GGAGACATTTCAGCACCTCA+AGG | 0.642144 | 8_2:-43655935 | Msa1249150:CDS |
| ACAAAGCGTACTGGTGAAGG+AGG | 0.643312 | 8_2:-43658429 | Msa1249150:CDS |
| GAAGGAGGAGCTGTGAAAAG+GGG | 0.644294 | 8_2:-43658414 | Msa1249150:CDS |
| TTCTGAGACAGTTATGCCAG+GGG | 0.654155 | 8_2:-43655675 | Msa1249150:CDS |
| TGGCATATGTCATAGGACCC+AGG | 0.664666 | 8_2:+43655642 | None:intergenic |
| GAATTATCCCGAGGACGCTG+TGG | 0.679154 | 8_2:-43658598 | Msa1249150:CDS |
| CCAGGGGTACCAATGAACCT+GGG | 0.686028 | 8_2:-43655659 | Msa1249150:CDS |
| TGCATTGGCGAATTATCCCG+AGG | 0.693717 | 8_2:-43658607 | Msa1249150:CDS |
| TTGAGCATATGTATGTTGCA+TGG | 0.694059 | 8_2:+43655622 | None:intergenic |
| TGACCGGTAATTGGTCCTTG+AGG | 0.703451 | 8_2:+43655920 | None:intergenic |
| GGATCGATGGGAGAAAATCG+CGG | 0.708384 | 8_2:-43658577 | Msa1249150:CDS |
| AAGTATATCAAGGTACAGTG+TGG | 0.727880 | 8_2:-43656080 | Msa1249150:CDS |
| GCACAAAACCAGATTCAATG+TGG | 0.730016 | 8_2:+43658487 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATTTAAATAAAATAA+AGG | + | chr8_2:43656260-43656279 | None:intergenic | 0.0% |
| !! | ACTAAAATCATATTTAAATA+CGG | + | chr8_2:43655970-43655989 | None:intergenic | 10.0% |
| !!! | ATCTTGTAAATTTTTTTTAT+TGG | - | chr8_2:43656020-43656039 | Msa1249150:CDS | 10.0% |
| !!! | TTAATAATTATAGTGTTTTT+TGG | + | chr8_2:43656212-43656231 | None:intergenic | 10.0% |
| !! | AATCTAAACAAAAAAACTTA+GGG | - | chr8_2:43656177-43656196 | Msa1249150:intron | 15.0% |
| !! | TATTTAAATATATACTCTTG+AGG | - | chr8_2:43656266-43656285 | Msa1249150:intron | 15.0% |
| !!! | TTCATTGATGTTTTAATTTT+AGG | + | chr8_2:43657107-43657126 | None:intergenic | 15.0% |
| !!! | TATAAAAACTTTTCTAACAT+GGG | - | chr8_2:43657788-43657807 | Msa1249150:intron | 15.0% |
| !! | TTTGAAAAAGAATCATAATC+TGG | + | chr8_2:43655826-43655845 | None:intergenic | 20.0% |
| !! | GAATCTAAACAAAAAAACTT+AGG | - | chr8_2:43656176-43656195 | Msa1249150:intron | 20.0% |
| !! | ACACTATAATTATTAATTGC+AGG | - | chr8_2:43656216-43656235 | Msa1249150:intron | 20.0% |
| !! | CACTATAATTATTAATTGCA+GGG | - | chr8_2:43656217-43656236 | Msa1249150:intron | 20.0% |
| !!! | TTTTTTAAGCTTATATGTGT+CGG | - | chr8_2:43656290-43656309 | Msa1249150:intron | 20.0% |
| !! | GATATGAATGATTAAAATGA+TGG | - | chr8_2:43656419-43656438 | Msa1249150:intron | 20.0% |
| !! | GAATGAAGTAAATAAAACTA+TGG | - | chr8_2:43656763-43656782 | Msa1249150:intron | 20.0% |
| !! | ATAAAACTATGGATTTAATG+AGG | - | chr8_2:43656774-43656793 | Msa1249150:intron | 20.0% |
| !!! | GTAAGTTCTAATAAATACAT+TGG | + | chr8_2:43656909-43656928 | None:intergenic | 20.0% |
| !!! | TTTTAGGATGTTTTAATTCT+AGG | + | chr8_2:43657091-43657110 | None:intergenic | 20.0% |
| !! | AAAACATCAATGAAAATGTA+TGG | - | chr8_2:43657113-43657132 | Msa1249150:intron | 20.0% |
| !! | AAACATCAATGAAAATGTAT+GGG | - | chr8_2:43657114-43657133 | Msa1249150:intron | 20.0% |
| !!! | GTATAAAAACTTTTCTAACA+TGG | - | chr8_2:43657787-43657806 | Msa1249150:intron | 20.0% |
| !! | TTGGTAAATACTGATAAATA+AGG | - | chr8_2:43657830-43657849 | Msa1249150:intron | 20.0% |
| !!! | CAACCATTTTTGAATTTACT+GGG | - | chr8_2:43656150-43656169 | Msa1249150:intron | 25.0% |
| !!! | TGTGCCTTAAAATTTTTCAA+CGG | - | chr8_2:43656631-43656650 | Msa1249150:intron | 25.0% |
| !! | AGATCCGTTGAAAAATTTTA+AGG | + | chr8_2:43656638-43656657 | None:intergenic | 25.0% |
| !! | TTTTACTAAACCATTGTATC+TGG | - | chr8_2:43656696-43656715 | Msa1249150:intron | 25.0% |
| !!! | TAGCATTTATCTAAGGTTTT+AGG | - | chr8_2:43656737-43656756 | Msa1249150:intron | 25.0% |
| ! | TGTAATAAATTCTTCTGATG+TGG | - | chr8_2:43656872-43656891 | Msa1249150:intron | 25.0% |
| ! | TAGTAGGATTAAATAGTGTT+GGG | - | chr8_2:43656956-43656975 | Msa1249150:intron | 25.0% |
| ! | AACATCAATGAAAATGTATG+GGG | - | chr8_2:43657115-43657134 | Msa1249150:intron | 25.0% |
| ! | TAGGATATTGTGTTAGTATT+AGG | + | chr8_2:43657224-43657243 | None:intergenic | 25.0% |
| ! | AGACTTTGATACATTGATAT+AGG | - | chr8_2:43657302-43657321 | Msa1249150:intron | 25.0% |
| !! | TTAGTAACTTTTCCAAAGAT+TGG | + | chr8_2:43657403-43657422 | None:intergenic | 25.0% |
| !! | TTGACTAAATTTAGAGTTAC+TGG | - | chr8_2:43657684-43657703 | Msa1249150:intron | 25.0% |
| ! | AAAGTTTGAATTAGGAAGTT+TGG | - | chr8_2:43657811-43657830 | Msa1249150:intron | 25.0% |
| ! | TGATAAATAAGGACTAGAAT+TGG | - | chr8_2:43657841-43657860 | Msa1249150:intron | 25.0% |
| ! | GATAAATAAGGACTAGAATT+GGG | - | chr8_2:43657842-43657861 | Msa1249150:intron | 25.0% |
| !!! | AAACACAGAAGTTTTTTACT+AGG | - | chr8_2:43657882-43657901 | Msa1249150:intron | 25.0% |
| ! | AAAACCAAAAAGATCTGATA+GGG | + | chr8_2:43657993-43658012 | None:intergenic | 25.0% |
| ! | TAAAACCAAAAAGATCTGAT+AGG | + | chr8_2:43657994-43658013 | None:intergenic | 25.0% |
| ! | TGTTACTGATAATCATCTAA+TGG | + | chr8_2:43658031-43658050 | None:intergenic | 25.0% |
| ! | AATTGCAGACATTAGTTATA+TGG | - | chr8_2:43658053-43658072 | Msa1249150:intron | 25.0% |
| !!! | TATTTTCAAGTTTGTTGAAC+AGG | - | chr8_2:43658135-43658154 | Msa1249150:intron | 25.0% |
| ! | GATGTTACCTTTGTAAAAAA+TGG | - | chr8_2:43658326-43658345 | Msa1249150:intron | 25.0% |
| !!! | AATGTCTCCATTTTTTACAA+AGG | + | chr8_2:43658336-43658355 | None:intergenic | 25.0% |
| ! | CAAAGCATTTGAAAATGCAT+TGG | - | chr8_2:43655660-43655679 | Msa1249150:CDS | 30.0% |
| !!! | AATCTCTTCTAAAGTTTTCC+CGG | + | chr8_2:43655740-43655759 | None:intergenic | 30.0% |
| AAAAAAACGCTATAGTTGCA+AGG | + | chr8_2:43655993-43656012 | None:intergenic | 30.0% | |
| ! | TCACGTGATGTGATTTTATT+GGG | - | chr8_2:43656101-43656120 | Msa1249150:CDS | 30.0% |
| !! | GCAACCATTTTTGAATTTAC+TGG | - | chr8_2:43656149-43656168 | Msa1249150:intron | 30.0% |
| ! | CATTTTTGAATTTACTGGGA+CGG | - | chr8_2:43656154-43656173 | Msa1249150:intron | 30.0% |
| CTAAACAAAAAAACTTAGGG+AGG | - | chr8_2:43656180-43656199 | Msa1249150:intron | 30.0% | |
| ATATCAGTATCGTCAAATAG+CGG | + | chr8_2:43656589-43656608 | None:intergenic | 30.0% | |
| ATAAATACATTGGATCACAG+AGG | + | chr8_2:43656899-43656918 | None:intergenic | 30.0% | |
| ACTTACTACACTTCTAATGA+CGG | - | chr8_2:43656923-43656942 | Msa1249150:intron | 30.0% | |
| CTAGTAGGATTAAATAGTGT+TGG | - | chr8_2:43656955-43656974 | Msa1249150:intron | 30.0% | |
| TAATTCAAATGCATGCTTCA+CGG | + | chr8_2:43657060-43657079 | None:intergenic | 30.0% | |
| !! | AACTTCCTTGATGATTTTAG+TGG | - | chr8_2:43657189-43657208 | Msa1249150:intron | 30.0% |
| ACAAACCACTAAAATCATCA+AGG | + | chr8_2:43657197-43657216 | None:intergenic | 30.0% | |
| AATGTATCAAAGTCTAAACG+AGG | + | chr8_2:43657297-43657316 | None:intergenic | 30.0% | |
| ! | TGTTTTGCTGGATTTTGTTA+TGG | - | chr8_2:43657370-43657389 | Msa1249150:intron | 30.0% |
| !! | GTTTTGCTGGATTTTGTTAT+GGG | - | chr8_2:43657371-43657390 | Msa1249150:intron | 30.0% |
| ATATCAGATCTGTGAAACAA+TGG | - | chr8_2:43657422-43657441 | Msa1249150:intron | 30.0% | |
| ATCTGTGAAACAATGGTATT+AGG | - | chr8_2:43657429-43657448 | Msa1249150:intron | 30.0% | |
| AATGTAGAACAATGTATTGC+TGG | - | chr8_2:43657469-43657488 | Msa1249150:intron | 30.0% | |
| CAAATGCCAATATCATTTAC+TGG | - | chr8_2:43657524-43657543 | Msa1249150:intron | 30.0% | |
| AACATGGGAAAGTTTGAATT+AGG | - | chr8_2:43657803-43657822 | Msa1249150:intron | 30.0% | |
| !!! | ACAGAAGTTTTTTACTAGGT+TGG | - | chr8_2:43657886-43657905 | Msa1249150:intron | 30.0% |
| !! | GAATTTTGTATTTCTGAGCA+TGG | + | chr8_2:43658256-43658275 | None:intergenic | 30.0% |
| TCAGAAATACAAAATTCGTC+AGG | - | chr8_2:43658259-43658278 | Msa1249150:intron | 30.0% | |
| TGAAAGAGAAGAAAGAAAGA+AGG | - | chr8_2:43658288-43658307 | Msa1249150:intron | 30.0% | |
| !!! | ATCTCTTCTAAAGTTTTCCC+GGG | + | chr8_2:43655739-43655758 | None:intergenic | 35.0% |
| GATATCAACCACATTGAATC+TGG | - | chr8_2:43655787-43655806 | Msa1249150:CDS | 35.0% | |
| AAAGAATCATAATCTGGCAG+AGG | + | chr8_2:43655820-43655839 | None:intergenic | 35.0% | |
| ! | CTTCGAGTTCTTATCAAGAA+CGG | - | chr8_2:43655899-43655918 | Msa1249150:CDS | 35.0% |
| AAGCTAACATCAGGAACTAA+AGG | + | chr8_2:43656075-43656094 | None:intergenic | 35.0% | |
| ! | AGTTCCTGATGTTAGCTTAT+TGG | - | chr8_2:43656077-43656096 | Msa1249150:CDS | 35.0% |
| ! | GTTCCTGATGTTAGCTTATT+GGG | - | chr8_2:43656078-43656097 | Msa1249150:CDS | 35.0% |
| ! | GTCACGTGATGTGATTTTAT+TGG | - | chr8_2:43656100-43656119 | Msa1249150:CDS | 35.0% |
| CGTCCCAGTAAATTCAAAAA+TGG | + | chr8_2:43656156-43656175 | None:intergenic | 35.0% | |
| ATTGCGAAAAATAGCCATGA+CGG | - | chr8_2:43656327-43656346 | Msa1249150:intron | 35.0% | |
| ! | GGATTGTGGTAACAGATTTT+TGG | - | chr8_2:43656348-43656367 | Msa1249150:intron | 35.0% |
| ! | CCTTTACTGATTGGATATGA+CGG | + | chr8_2:43656378-43656397 | None:intergenic | 35.0% |
| CGTCATATCCAATCAGTAAA+GGG | - | chr8_2:43656376-43656395 | Msa1249150:intron | 35.0% | |
| !!! | AAGGGCATCATAGTGTTTTA+TGG | - | chr8_2:43656394-43656413 | Msa1249150:intron | 35.0% |
| ! | TTGTAGCCAGTGTTATTGAT+GGG | + | chr8_2:43656459-43656478 | None:intergenic | 35.0% |
| ! | ATTGTAGCCAGTGTTATTGA+TGG | + | chr8_2:43656460-43656479 | None:intergenic | 35.0% |
| GTGCTACACTATTAAGTACA+AGG | + | chr8_2:43656506-43656525 | None:intergenic | 35.0% | |
| AAACAGTCACAGTAGTTAAC+TGG | + | chr8_2:43656679-43656698 | None:intergenic | 35.0% | |
| TAAAGGAGAACCAGATACAA+TGG | + | chr8_2:43656709-43656728 | None:intergenic | 35.0% | |
| ! | TAAATGCTACGTACTGGTAA+AGG | + | chr8_2:43656726-43656745 | None:intergenic | 35.0% |
| CTTAGATAAATGCTACGTAC+TGG | + | chr8_2:43656732-43656751 | None:intergenic | 35.0% | |
| CAGTACGTAGCATTTATCTA+AGG | - | chr8_2:43656730-43656749 | Msa1249150:intron | 35.0% | |
| TTCCATCATCCATGTTAGAA+GGG | - | chr8_2:43656826-43656845 | Msa1249150:intron | 35.0% | |
| AATCACAATCCCTTCTAACA+TGG | + | chr8_2:43656838-43656857 | None:intergenic | 35.0% | |
| GTGAAGCATGCATTTGAATT+AGG | - | chr8_2:43657059-43657078 | Msa1249150:intron | 35.0% | |
| AGAACATCTAACATCGTTGT+AGG | + | chr8_2:43657243-43657262 | None:intergenic | 35.0% | |
| TATGGGTTTACTCCAATCTT+TGG | - | chr8_2:43657388-43657407 | Msa1249150:intron | 35.0% | |
| ATCCTTGCACAAATTGTCTA+TGG | + | chr8_2:43657573-43657592 | None:intergenic | 35.0% | |
| ACTAAGATCCAGCAAAAAGA+TGG | + | chr8_2:43657769-43657788 | None:intergenic | 35.0% | |
| !! | TTTTTACTAGGTTGGAAGCT+CGG | - | chr8_2:43657894-43657913 | Msa1249150:intron | 35.0% |
| TAGTTACTTGTCAGAGGTAA+TGG | + | chr8_2:43657965-43657984 | None:intergenic | 35.0% | |
| GACTATTAGTTACTTGTCAG+AGG | + | chr8_2:43657971-43657990 | None:intergenic | 35.0% | |
| ! | TAGTCCCTATCAGATCTTTT+TGG | - | chr8_2:43657986-43658005 | Msa1249150:intron | 35.0% |
| !! | TTGAACAGGCTATTTCTTCA+AGG | - | chr8_2:43658149-43658168 | Msa1249150:intron | 35.0% |
| AAGTATATCAAGGTACAGTG+TGG | - | chr8_2:43658202-43658221 | Msa1249150:intron | 35.0% | |
| AAAGGTAACATCATGTATGC+TGG | + | chr8_2:43658318-43658337 | None:intergenic | 35.0% | |
| TTGAGCATATGTATGTTGCA+TGG | + | chr8_2:43658663-43658682 | None:intergenic | 35.0% | |
| AGAGATTAAGCGTCACTATG+TGG | - | chr8_2:43655753-43655772 | Msa1249150:CDS | 40.0% | |
| GCACAAAACCAGATTCAATG+TGG | + | chr8_2:43655798-43655817 | None:intergenic | 40.0% | |
| AAGAGTTCAACAAAGCGTAC+TGG | - | chr8_2:43655844-43655863 | Msa1249150:CDS | 40.0% | |
| TTCTTATCAAGAACGGCGAA+AGG | - | chr8_2:43655906-43655925 | Msa1249150:CDS | 40.0% | |
| TCTTATCAAGAACGGCGAAA+GGG | - | chr8_2:43655907-43655926 | Msa1249150:CDS | 40.0% | |
| TGACCCAATAAGCTAACATC+AGG | + | chr8_2:43656084-43656103 | None:intergenic | 40.0% | |
| !! | ATGTGTCGGTGTTACAATTG+CGG | - | chr8_2:43656304-43656323 | Msa1249150:intron | 40.0% |
| !! | AAAATAGCCATGACGGATTG+TGG | - | chr8_2:43656334-43656353 | Msa1249150:intron | 40.0% |
| CCGTCATATCCAATCAGTAA+AGG | - | chr8_2:43656375-43656394 | Msa1249150:intron | 40.0% | |
| CTATGATGCCCTTTACTGAT+TGG | + | chr8_2:43656387-43656406 | None:intergenic | 40.0% | |
| ! | GGCATCATAGTGTTTTATGG+TGG | - | chr8_2:43656397-43656416 | Msa1249150:intron | 40.0% |
| ! | TGTAGCCAGTGTTATTGATG+GGG | + | chr8_2:43656458-43656477 | None:intergenic | 40.0% |
| GTTCCATCATCCATGTTAGA+AGG | - | chr8_2:43656825-43656844 | Msa1249150:intron | 40.0% | |
| ATCCCTTCTAACATGGATGA+TGG | + | chr8_2:43656831-43656850 | None:intergenic | 40.0% | |
| ! | ATAGTGTTGGGTAAAGCGTT+TGG | - | chr8_2:43656968-43656987 | Msa1249150:intron | 40.0% |
| ! | TAGTGTTGGGTAAAGCGTTT+GGG | - | chr8_2:43656969-43656988 | Msa1249150:intron | 40.0% |
| AAATCCTAGTGGTCCTTGAT+TGG | - | chr8_2:43656996-43657015 | Msa1249150:intron | 40.0% | |
| TCCTTGATTGGTAGGTCATT+TGG | - | chr8_2:43657008-43657027 | Msa1249150:intron | 40.0% | |
| TCCAAATGACCTACCAATCA+AGG | + | chr8_2:43657012-43657031 | None:intergenic | 40.0% | |
| TTGATTGGTAGGTCATTTGG+AGG | - | chr8_2:43657011-43657030 | Msa1249150:intron | 40.0% | |
| AGTGTAACTCACTGCAACAT+TGG | + | chr8_2:43657346-43657365 | None:intergenic | 40.0% | |
| AATGTTGCAGTGAGTTACAC+TGG | - | chr8_2:43657345-43657364 | Msa1249150:intron | 40.0% | |
| !! | GTTACACTGGATTGTTTTGC+TGG | - | chr8_2:43657358-43657377 | Msa1249150:intron | 40.0% |
| AATATCATTTACTGGCGTGG+CGG | - | chr8_2:43657532-43657551 | Msa1249150:intron | 40.0% | |
| CTTGCACAAATTGTCTATGG+TGG | + | chr8_2:43657570-43657589 | None:intergenic | 40.0% | |
| CACCATAGACAATTTGTGCA+AGG | - | chr8_2:43657568-43657587 | Msa1249150:intron | 40.0% | |
| !!! | GGCTGCAATGCTGTTTTTTA+CGG | - | chr8_2:43657614-43657633 | Msa1249150:intron | 40.0% |
| !!! | TGCAATGCTGTTTTTTACGG+CGG | - | chr8_2:43657617-43657636 | Msa1249150:intron | 40.0% |
| !!! | TCAAGAGTTTTGATTCCAGC+AGG | + | chr8_2:43658449-43658468 | None:intergenic | 40.0% |
| AAGACCATAATCCATGTCTC+CGG | + | chr8_2:43658579-43658598 | None:intergenic | 40.0% | |
| !! | TTTCTGAGACAGTTATGCCA+GGG | - | chr8_2:43658606-43658625 | Msa1249150:CDS | 40.0% |
| TGTTGCATGGCATATGTCAT+AGG | + | chr8_2:43658650-43658669 | None:intergenic | 40.0% | |
| ! | TCAACAAAGCGTACTGGTGA+AGG | - | chr8_2:43655850-43655869 | Msa1249150:CDS | 45.0% |
| TGAAGGAGGAGCTGTGAAAA+GGG | - | chr8_2:43655867-43655886 | Msa1249150:CDS | 45.0% | |
| CTATGTTCATCTTCCGTCCA+AGG | + | chr8_2:43655937-43655956 | None:intergenic | 45.0% | |
| CTTGGACGGAAGATGAACAT+AGG | - | chr8_2:43655935-43655954 | Msa1249150:CDS | 45.0% | |
| TCTGTTACCACAATCCGTCA+TGG | + | chr8_2:43656344-43656363 | None:intergenic | 45.0% | |
| CTTTCCCCCATCAATAACAC+TGG | - | chr8_2:43656450-43656469 | Msa1249150:intron | 45.0% | |
| ! | GTAGCCAGTGTTATTGATGG+GGG | + | chr8_2:43656457-43656476 | None:intergenic | 45.0% |
| AGGCACAGCTAACATAGCTT+AGG | + | chr8_2:43656618-43656637 | None:intergenic | 45.0% | |
| ! | TGACGGTTGACTCAACTAGT+AGG | - | chr8_2:43656940-43656959 | Msa1249150:intron | 45.0% |
| ! | AGTGTTGGGTAAAGCGTTTG+GGG | - | chr8_2:43656970-43656989 | Msa1249150:intron | 45.0% |
| ! | GTTTGGGGTTCAAATCCTAG+TGG | - | chr8_2:43656985-43657004 | Msa1249150:intron | 45.0% |
| GTAACTCACTGCAACATTGG+AGG | + | chr8_2:43657343-43657362 | None:intergenic | 45.0% | |
| GCCAATATCATTTACTGGCG+TGG | - | chr8_2:43657529-43657548 | Msa1249150:intron | 45.0% | |
| GCCACGCCAGTAAATGATAT+TGG | + | chr8_2:43657533-43657552 | None:intergenic | 45.0% | |
| ! | TTGTGCAAGGATGCTTGCTA+TGG | - | chr8_2:43657581-43657600 | Msa1249150:intron | 45.0% |
| !! | TGTGCAAGGATGCTTGCTAT+GGG | - | chr8_2:43657582-43657601 | Msa1249150:intron | 45.0% |
| ! | ACGAGTCTCCATCTTTTTGC+TGG | - | chr8_2:43657758-43657777 | Msa1249150:intron | 45.0% |
| GTGACTGGCGAAGTATATCA+AGG | - | chr8_2:43658192-43658211 | Msa1249150:intron | 45.0% | |
| TTGCTTGCTTGACCGGTAAT+TGG | + | chr8_2:43658374-43658393 | None:intergenic | 45.0% | |
| AGCAGAATTGCTTGCTTGAC+CGG | + | chr8_2:43658381-43658400 | None:intergenic | 45.0% | |
| AATTCTGCTGCAAGTTCTGC+TGG | - | chr8_2:43658392-43658411 | Msa1249150:CDS | 45.0% | |
| !!! | GAGTTTTGATTCCAGCAGGT+GGG | + | chr8_2:43658445-43658464 | None:intergenic | 45.0% |
| !!! | AGAGTTTTGATTCCAGCAGG+TGG | + | chr8_2:43658446-43658465 | None:intergenic | 45.0% |
| GATACAACTGGTCCTCCTAT+AGG | + | chr8_2:43658524-43658543 | None:intergenic | 45.0% | |
| GTACCAACTGCAGATACAAC+TGG | + | chr8_2:43658536-43658555 | None:intergenic | 45.0% | |
| ! | CCAGTGAATTTTACTGCTCC+CGG | - | chr8_2:43658557-43658576 | Msa1249150:CDS | 45.0% |
| AGACCATAATCCATGTCTCC+GGG | + | chr8_2:43658578-43658597 | None:intergenic | 45.0% | |
| ! | GGAGACATGGATTATGGTCT+TGG | - | chr8_2:43658578-43658597 | Msa1249150:CDS | 45.0% |
| GGCATAACTGTCTCAGAAAC+TGG | + | chr8_2:43658605-43658624 | None:intergenic | 45.0% | |
| !! | GTTTCTGAGACAGTTATGCC+AGG | - | chr8_2:43658605-43658624 | Msa1249150:CDS | 45.0% |
| !! | TTCTGAGACAGTTATGCCAG+GGG | - | chr8_2:43658607-43658626 | Msa1249150:CDS | 45.0% |
| AAATGGGTAGCAGCTGTGAG+TGG | - | chr8_2:43655623-43655642 | Msa1249150:CDS | 50.0% | |
| ! | TGCATTGGCGAATTATCCCG+AGG | - | chr8_2:43655675-43655694 | Msa1249150:CDS | 50.0% |
| GGATCGATGGGAGAAAATCG+CGG | - | chr8_2:43655705-43655724 | Msa1249150:CDS | 50.0% | |
| AAAATCGCGGCTGATGTACC+CGG | - | chr8_2:43655718-43655737 | Msa1249150:CDS | 50.0% | |
| ! | ACAAAGCGTACTGGTGAAGG+AGG | - | chr8_2:43655853-43655872 | Msa1249150:CDS | 50.0% |
| GTGAAGGAGGAGCTGTGAAA+AGG | - | chr8_2:43655866-43655885 | Msa1249150:CDS | 50.0% | |
| GAAGGAGGAGCTGTGAAAAG+GGG | - | chr8_2:43655868-43655887 | Msa1249150:CDS | 50.0% | |
| AGCTGTGAAAAGGGGAGCTA+AGG | - | chr8_2:43655876-43655895 | Msa1249150:CDS | 50.0% | |
| TCGTCAAATAGCGGCTGTAG+TGG | + | chr8_2:43656580-43656599 | None:intergenic | 50.0% | |
| CCTACCAATCAAGGACCACT+AGG | + | chr8_2:43657003-43657022 | None:intergenic | 50.0% | |
| CCTAGTGGTCCTTGATTGGT+AGG | - | chr8_2:43657000-43657019 | Msa1249150:intron | 50.0% | |
| !! | GTGCAAGGATGCTTGCTATG+GGG | - | chr8_2:43657583-43657602 | Msa1249150:intron | 50.0% |
| !! | TGCAAGGATGCTTGCTATGG+GGG | - | chr8_2:43657584-43657603 | Msa1249150:intron | 50.0% |
| CAGTTTCGTCGACGTCAGAA+TGG | + | chr8_2:43657649-43657668 | None:intergenic | 50.0% | |
| TGACGTCGACGAAACTGATC+AGG | - | chr8_2:43657652-43657671 | Msa1249150:intron | 50.0% | |
| !! | CAGGCTATTTCTTCAAGGCC+TGG | - | chr8_2:43658154-43658173 | Msa1249150:intron | 50.0% |
| !! | GCATGGCTTGCTACTTGTGT+AGG | + | chr8_2:43658239-43658258 | None:intergenic | 50.0% |
| GGAGACATTTCAGCACCTCA+AGG | - | chr8_2:43658347-43658366 | Msa1249150:intron | 50.0% | |
| GCACCTCAAGGACCAATTAC+CGG | - | chr8_2:43658359-43658378 | Msa1249150:CDS | 50.0% | |
| TGACCGGTAATTGGTCCTTG+AGG | + | chr8_2:43658365-43658384 | None:intergenic | 50.0% | |
| GGACCAGTTGTATCTGCAGT+TGG | - | chr8_2:43658530-43658549 | Msa1249150:CDS | 50.0% | |
| CCGGGAGCAGTAAAATTCAC+TGG | + | chr8_2:43658560-43658579 | None:intergenic | 50.0% | |
| ! | TTTTACTGCTCCCGGAGACA+TGG | - | chr8_2:43658565-43658584 | Msa1249150:CDS | 50.0% |
| GTCATAGGACCCAGGTTCAT+TGG | + | chr8_2:43658635-43658654 | None:intergenic | 50.0% | |
| TGGCATATGTCATAGGACCC+AGG | + | chr8_2:43658643-43658662 | None:intergenic | 50.0% | |
| GAATTATCCCGAGGACGCTG+TGG | - | chr8_2:43655684-43655703 | Msa1249150:CDS | 55.0% | |
| AAATCGCGGCTGATGTACCC+GGG | - | chr8_2:43655719-43655738 | Msa1249150:CDS | 55.0% | |
| !! | AACGGCGAAAGGGTGTTCCT+TGG | - | chr8_2:43655917-43655936 | Msa1249150:CDS | 55.0% |
| !! | GCGAAAGGGTGTTCCTTGGA+CGG | - | chr8_2:43655921-43655940 | Msa1249150:CDS | 55.0% |
| !! | GCTTGCTATGGGGGTGCTAT+CGG | - | chr8_2:43657593-43657612 | Msa1249150:intron | 55.0% |
| CTTCAAGGCCTGGAGAACCA+TGG | - | chr8_2:43658164-43658183 | Msa1249150:intron | 55.0% | |
| AAGGCCTGGAGAACCATGGA+TGG | - | chr8_2:43658168-43658187 | Msa1249150:intron | 55.0% | |
| AGGCCTGGAGAACCATGGAT+GGG | - | chr8_2:43658169-43658188 | Msa1249150:intron | 55.0% | |
| AGAACCATGGATGGGGTGAC+TGG | - | chr8_2:43658177-43658196 | Msa1249150:intron | 55.0% | |
| ! | TGGGACTGGAGGAGCTTGTT+CGG | + | chr8_2:43658426-43658445 | None:intergenic | 55.0% |
| TTGATTCCAGCAGGTGGGAC+TGG | + | chr8_2:43658440-43658459 | None:intergenic | 55.0% | |
| AGCGTGTATTCCAGCAGGTG+GGG | + | chr8_2:43658483-43658502 | None:intergenic | 55.0% | |
| CAGCGTGTATTCCAGCAGGT+GGG | + | chr8_2:43658484-43658503 | None:intergenic | 55.0% | |
| CTGGAATACACGCTGCTCCT+GGG | - | chr8_2:43658489-43658508 | Msa1249150:CDS | 55.0% | |
| ATACACGCTGCTCCTGGGAT+CGG | - | chr8_2:43658494-43658513 | Msa1249150:CDS | 55.0% | |
| ! | GCTCCCGGAGACATGGATTA+TGG | - | chr8_2:43658572-43658591 | Msa1249150:CDS | 55.0% |
| !! | CCAGGGGTACCAATGAACCT+GGG | - | chr8_2:43658623-43658642 | Msa1249150:CDS | 55.0% |
| CATCGATCCACAGCGTCCTC+GGG | + | chr8_2:43655694-43655713 | None:intergenic | 60.0% | |
| CCATCGATCCACAGCGTCCT+CGG | + | chr8_2:43655695-43655714 | None:intergenic | 60.0% | |
| CGAGGACGCTGTGGATCGAT+GGG | - | chr8_2:43655693-43655712 | Msa1249150:CDS | 60.0% | |
| GGCCTGGAGAACCATGGATG+GGG | - | chr8_2:43658170-43658189 | Msa1249150:intron | 60.0% | |
| CACCCCATCCATGGTTCTCC+AGG | + | chr8_2:43658175-43658194 | None:intergenic | 60.0% | |
| TTCGCCAGTCACCCCATCCA+TGG | + | chr8_2:43658184-43658203 | None:intergenic | 60.0% | |
| ATTCCAGCAGGTGGGACTGG+AGG | + | chr8_2:43658437-43658456 | None:intergenic | 60.0% | |
| TGTATTCCAGCAGGTGGGGC+TGG | + | chr8_2:43658479-43658498 | None:intergenic | 60.0% | |
| GCAGCGTGTATTCCAGCAGG+TGG | + | chr8_2:43658485-43658504 | None:intergenic | 60.0% | |
| GGAGCAGCGTGTATTCCAGC+AGG | + | chr8_2:43658488-43658507 | None:intergenic | 60.0% | |
| GCTGGAATACACGCTGCTCC+TGG | - | chr8_2:43658488-43658507 | Msa1249150:CDS | 60.0% | |
| TACACGCTGCTCCTGGGATC+GGG | - | chr8_2:43658495-43658514 | Msa1249150:CDS | 60.0% | |
| CCTATAGGTTGCCCGATCCC+AGG | + | chr8_2:43658509-43658528 | None:intergenic | 60.0% | |
| CCTGGGATCGGGCAACCTAT+AGG | - | chr8_2:43658506-43658525 | Msa1249150:CDS | 60.0% | |
| GGGATCGGGCAACCTATAGG+AGG | - | chr8_2:43658509-43658528 | Msa1249150:CDS | 60.0% | |
| !! | GCCAGGGGTACCAATGAACC+TGG | - | chr8_2:43658622-43658641 | Msa1249150:CDS | 60.0% |
| CCCAGGTTCATTGGTACCCC+TGG | + | chr8_2:43658626-43658645 | None:intergenic | 60.0% | |
| CCGAGGACGCTGTGGATCGA+TGG | - | chr8_2:43655692-43655711 | Msa1249150:CDS | 65.0% | |
| AATCCTCCAGCCCCACCTGC+TGG | - | chr8_2:43658470-43658489 | Msa1249150:CDS | 65.0% | |
| ATTCCAGCAGGTGGGGCTGG+AGG | + | chr8_2:43658476-43658495 | None:intergenic | 65.0% | |
| GCTCCTCCAGTCCCACCTGC+TGG | - | chr8_2:43658431-43658450 | Msa1249150:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 43655616 | 43658688 | 43655616 | ID=Msa1249150;Name=Msa1249150 |
| chr8_2 | mRNA | 43655616 | 43658688 | 43655616 | ID=Msa1249150-mRNA-1;Parent=Msa1249150;Name=Msa1249150-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|290 |
| chr8_2 | exon | 43658348 | 43658688 | 43658348 | ID=Msa1249150-mRNA-1:exon:13281;Parent=Msa1249150-mRNA-1 |
| chr8_2 | exon | 43655616 | 43656147 | 43655616 | ID=Msa1249150-mRNA-1:exon:13280;Parent=Msa1249150-mRNA-1 |
| chr8_2 | CDS | 43658348 | 43658688 | 43658348 | ID=Msa1249150-mRNA-1:cds;Parent=Msa1249150-mRNA-1 |
| chr8_2 | CDS | 43655616 | 43656147 | 43655616 | ID=Msa1249150-mRNA-1:cds;Parent=Msa1249150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
