Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1249420 | XP_013445934.1 | 60.556 | 360 | 48 | 7 | 1 | 354 | 1 | 272 | 2.28e-133 | 391 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1249420 | sp|Q9FNN6|SRM1_ARATH | 46.743 | 261 | 99 | 8 | 11 | 233 | 12 | 270 | 1.26e-58 | 194 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1249420 | A0A072TS07 | 60.556 | 360 | 48 | 7 | 1 | 354 | 1 | 272 | 1.09e-133 | 391 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1249420 | TF | MYB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1249420 | MtrunA17_Chr8g0365011 | 58.602 | 372 | 48 | 8 | 1 | 354 | 1 | 284 | 4.03e-134 | 384 |
| Msa1249420 | MtrunA17_Chr1g0162081 | 49.158 | 297 | 85 | 10 | 1 | 261 | 3 | 269 | 2.06e-71 | 224 |
| Msa1249420 | MtrunA17_Chr8g0364741 | 68.750 | 128 | 24 | 4 | 1 | 113 | 1 | 127 | 9.70e-49 | 160 |
| Msa1249420 | MtrunA17_Chr4g0062741 | 37.188 | 320 | 110 | 14 | 11 | 266 | 8 | 300 | 1.82e-45 | 157 |
| Msa1249420 | MtrunA17_Chr1g0210471 | 51.462 | 171 | 66 | 3 | 10 | 165 | 23 | 191 | 1.93e-45 | 155 |
| Msa1249420 | MtrunA17_Chr3g0104071 | 44.134 | 179 | 79 | 3 | 6 | 165 | 38 | 214 | 1.04e-42 | 150 |
| Msa1249420 | MtrunA17_Chr5g0429521 | 41.753 | 194 | 90 | 5 | 11 | 184 | 29 | 219 | 1.22e-41 | 147 |
| Msa1249420 | MtrunA17_Chr7g0241761 | 43.575 | 179 | 79 | 3 | 10 | 168 | 34 | 210 | 2.52e-40 | 144 |
| Msa1249420 | MtrunA17_Chr8g0364731 | 53.988 | 163 | 43 | 3 | 105 | 257 | 10 | 150 | 8.10e-40 | 139 |
| Msa1249420 | MtrunA17_Chr8g0364731 | 54.082 | 98 | 37 | 2 | 257 | 354 | 95 | 184 | 8.45e-22 | 91.3 |
| Msa1249420 | MtrunA17_Chr5g0436501 | 47.337 | 169 | 76 | 3 | 10 | 165 | 26 | 194 | 8.25e-40 | 142 |
| Msa1249420 | MtrunA17_Chr5g0432921 | 42.945 | 163 | 82 | 8 | 7 | 160 | 17 | 177 | 2.29e-28 | 110 |
| Msa1249420 | MtrunA17_Chr5g0432941 | 42.593 | 162 | 83 | 8 | 7 | 160 | 18 | 177 | 1.17e-27 | 108 |
| Msa1249420 | MtrunA17_Chr5g0440731 | 44.737 | 114 | 50 | 3 | 95 | 207 | 104 | 205 | 2.77e-23 | 98.2 |
| Msa1249420 | MtrunA17_Chr5g0440741 | 45.536 | 112 | 48 | 3 | 97 | 207 | 101 | 200 | 6.27e-23 | 97.1 |
| Msa1249420 | MtrunA17_Chr5g0409841 | 40.000 | 120 | 72 | 0 | 97 | 216 | 93 | 212 | 1.80e-21 | 91.7 |
| Msa1249420 | MtrunA17_Chr1g0155181 | 57.353 | 68 | 29 | 0 | 6 | 73 | 2 | 69 | 3.32e-20 | 84.0 |
| Msa1249420 | MtrunA17_Chr4g0055931 | 50.000 | 90 | 42 | 2 | 98 | 186 | 97 | 184 | 3.25e-19 | 87.0 |
| Msa1249420 | MtrunA17_Chr6g0488471 | 63.636 | 66 | 22 | 1 | 98 | 163 | 99 | 162 | 4.38e-19 | 86.3 |
| Msa1249420 | MtrunA17_Chr2g0331031 | 57.576 | 66 | 26 | 1 | 98 | 163 | 111 | 174 | 6.88e-19 | 86.7 |
| Msa1249420 | MtrunA17_Chr3g0144631 | 53.846 | 65 | 30 | 0 | 11 | 75 | 16 | 80 | 1.64e-18 | 79.3 |
| Msa1249420 | MtrunA17_Chr8g0389241 | 59.091 | 66 | 24 | 1 | 98 | 163 | 107 | 169 | 2.35e-18 | 84.0 |
| Msa1249420 | MtrunA17_Chr3g0141601 | 56.061 | 66 | 29 | 0 | 8 | 73 | 4 | 69 | 3.70e-18 | 78.6 |
| Msa1249420 | MtrunA17_Chr5g0404101 | 59.091 | 66 | 27 | 0 | 8 | 73 | 16 | 81 | 4.82e-18 | 78.6 |
| Msa1249420 | MtrunA17_Chr3g0092621 | 48.780 | 82 | 35 | 2 | 98 | 174 | 86 | 165 | 1.20e-16 | 77.0 |
| Msa1249420 | MtrunA17_Chr4g0059701 | 75.556 | 45 | 11 | 0 | 98 | 142 | 86 | 130 | 1.25e-16 | 79.3 |
| Msa1249420 | MtrunA17_Chr1g0192061 | 59.701 | 67 | 25 | 2 | 94 | 159 | 59 | 124 | 4.08e-16 | 75.9 |
| Msa1249420 | MtrunA17_Chr5g0415191 | 71.111 | 45 | 13 | 0 | 98 | 142 | 104 | 148 | 6.84e-16 | 77.4 |
| Msa1249420 | MtrunA17_Chr6g0449111 | 52.174 | 69 | 33 | 0 | 5 | 73 | 4 | 72 | 7.82e-16 | 71.6 |
| Msa1249420 | MtrunA17_Chr3g0135671 | 51.389 | 72 | 32 | 2 | 98 | 167 | 93 | 163 | 2.06e-15 | 74.7 |
| Msa1249420 | MtrunA17_Chr5g0409831 | 65.217 | 46 | 16 | 0 | 97 | 142 | 78 | 123 | 4.48e-15 | 73.6 |
| Msa1249420 | MtrunA17_Chr7g0255841 | 54.688 | 64 | 29 | 0 | 14 | 77 | 15 | 78 | 9.23e-15 | 69.3 |
| Msa1249420 | MtrunA17_Chr6g0452791 | 68.889 | 45 | 14 | 0 | 98 | 142 | 82 | 126 | 3.32e-14 | 70.1 |
| Msa1249420 | MtrunA17_Chr8g0373111 | 46.154 | 65 | 34 | 1 | 11 | 75 | 5 | 68 | 8.03e-14 | 65.9 |
| Msa1249420 | MtrunA17_Chr8g0373121 | 46.154 | 65 | 34 | 1 | 11 | 75 | 5 | 68 | 8.03e-14 | 65.9 |
| Msa1249420 | MtrunA17_Chr8g0373131 | 46.154 | 65 | 34 | 1 | 11 | 75 | 5 | 68 | 9.01e-14 | 65.9 |
| Msa1249420 | MtrunA17_Chr8g0370131 | 37.500 | 96 | 47 | 1 | 98 | 193 | 105 | 187 | 8.65e-13 | 67.0 |
| Msa1249420 | MtrunA17_Chr3g0081631 | 49.275 | 69 | 34 | 1 | 6 | 73 | 5 | 73 | 9.50e-13 | 63.5 |
| Msa1249420 | MtrunA17_Chr5g0404301 | 50.820 | 61 | 29 | 1 | 11 | 71 | 4 | 63 | 1.12e-12 | 62.4 |
| Msa1249420 | MtrunA17_Chr3g0113121 | 34.483 | 145 | 74 | 5 | 45 | 170 | 32 | 174 | 2.15e-12 | 65.9 |
| Msa1249420 | MtrunA17_Chr3g0141641 | 48.438 | 64 | 31 | 2 | 11 | 73 | 3 | 65 | 4.63e-12 | 61.6 |
| Msa1249420 | MtrunA17_Chr8g0373101 | 44.262 | 61 | 33 | 1 | 11 | 71 | 5 | 64 | 3.64e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1249420 | AT5G08520.1 | 46.743 | 261 | 99 | 8 | 11 | 233 | 12 | 270 | 1.28e-59 | 194 |
| Msa1249420 | AT5G23650.1 | 32.791 | 369 | 162 | 10 | 11 | 341 | 13 | 333 | 2.67e-42 | 150 |
| Msa1249420 | AT5G04760.1 | 44.335 | 203 | 85 | 6 | 8 | 192 | 3 | 195 | 4.20e-42 | 146 |
| Msa1249420 | AT1G49010.1 | 41.951 | 205 | 75 | 5 | 11 | 173 | 8 | 210 | 5.39e-42 | 149 |
| Msa1249420 | AT2G38090.1 | 43.850 | 187 | 76 | 5 | 6 | 165 | 24 | 208 | 3.48e-41 | 146 |
| Msa1249420 | AT5G58900.1 | 41.243 | 177 | 80 | 3 | 11 | 165 | 34 | 208 | 5.52e-39 | 140 |
| Msa1249420 | AT3G11280.2 | 45.732 | 164 | 72 | 4 | 11 | 162 | 33 | 191 | 9.33e-39 | 139 |
| Msa1249420 | AT3G11280.1 | 45.732 | 164 | 72 | 4 | 11 | 162 | 33 | 191 | 9.33e-39 | 139 |
| Msa1249420 | AT5G05790.2 | 42.373 | 177 | 79 | 4 | 7 | 165 | 27 | 198 | 3.77e-37 | 135 |
| Msa1249420 | AT5G05790.1 | 42.373 | 177 | 79 | 4 | 7 | 165 | 27 | 198 | 3.77e-37 | 135 |
| Msa1249420 | AT5G01200.1 | 38.421 | 190 | 84 | 3 | 7 | 165 | 26 | 213 | 7.40e-34 | 126 |
| Msa1249420 | AT4G09450.1 | 42.308 | 156 | 83 | 5 | 10 | 163 | 6 | 156 | 2.59e-25 | 101 |
| Msa1249420 | AT3G10580.2 | 40.385 | 156 | 85 | 4 | 11 | 163 | 8 | 158 | 6.62e-24 | 99.4 |
| Msa1249420 | AT3G10580.1 | 40.385 | 156 | 85 | 4 | 11 | 163 | 8 | 158 | 8.24e-24 | 99.8 |
| Msa1249420 | AT1G75250.2 | 56.061 | 66 | 29 | 0 | 11 | 76 | 12 | 77 | 1.10e-19 | 83.2 |
| Msa1249420 | AT1G75250.1 | 56.061 | 66 | 29 | 0 | 11 | 76 | 12 | 77 | 4.62e-19 | 82.4 |
| Msa1249420 | AT4G39250.1 | 53.968 | 63 | 29 | 0 | 11 | 73 | 14 | 76 | 7.70e-19 | 81.3 |
| Msa1249420 | AT5G47390.1 | 57.576 | 66 | 26 | 1 | 98 | 163 | 98 | 161 | 2.63e-18 | 85.5 |
| Msa1249420 | AT3G10590.1 | 32.432 | 185 | 89 | 7 | 11 | 169 | 7 | 181 | 3.25e-17 | 79.7 |
| Msa1249420 | AT5G56840.1 | 61.667 | 60 | 23 | 0 | 98 | 157 | 93 | 152 | 5.05e-17 | 79.7 |
| Msa1249420 | AT1G19510.1 | 47.887 | 71 | 37 | 0 | 14 | 84 | 15 | 85 | 6.22e-17 | 75.9 |
| Msa1249420 | AT3G16350.1 | 50.588 | 85 | 31 | 2 | 69 | 142 | 99 | 183 | 9.76e-17 | 81.3 |
| Msa1249420 | AT5G61620.1 | 56.061 | 66 | 27 | 1 | 98 | 163 | 110 | 173 | 1.15e-16 | 80.1 |
| Msa1249420 | AT1G70000.1 | 75.556 | 45 | 11 | 0 | 98 | 142 | 100 | 144 | 3.03e-16 | 78.2 |
| Msa1249420 | AT1G70000.2 | 75.556 | 45 | 11 | 0 | 98 | 142 | 100 | 144 | 3.03e-16 | 78.2 |
| Msa1249420 | AT2G21650.1 | 52.308 | 65 | 31 | 0 | 11 | 75 | 14 | 78 | 5.20e-16 | 73.6 |
| Msa1249420 | AT1G74840.2 | 68.889 | 45 | 14 | 0 | 98 | 142 | 98 | 142 | 5.25e-16 | 77.0 |
| Msa1249420 | AT1G74840.1 | 68.889 | 45 | 14 | 0 | 98 | 142 | 98 | 142 | 6.76e-16 | 77.0 |
| Msa1249420 | AT1G19000.2 | 66.667 | 45 | 15 | 0 | 98 | 142 | 104 | 148 | 1.75e-14 | 73.6 |
| Msa1249420 | AT1G19000.1 | 66.667 | 45 | 15 | 0 | 98 | 142 | 104 | 148 | 1.75e-14 | 73.6 |
| Msa1249420 | AT2G18328.1 | 52.542 | 59 | 28 | 0 | 15 | 73 | 15 | 73 | 4.62e-14 | 67.0 |
| Msa1249420 | AT3G10585.1 | 34.356 | 163 | 78 | 6 | 11 | 169 | 7 | 144 | 2.02e-11 | 62.4 |
Find 113 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAACATCACTATGAGATTT+TGG | 0.187100 | 8_2:+44081034 | Msa1249420:CDS |
| TGGATGATCATCTAAATTTC+TGG | 0.206174 | 8_2:-44082188 | None:intergenic |
| TATGTTGCTGCCCCGCCTTC+TGG | 0.226151 | 8_2:+44082163 | Msa1249420:CDS |
| GATGAGCAGGTTATTTCTTA+TGG | 0.229350 | 8_2:+44081661 | Msa1249420:intron |
| TCGCTTGCTTGACCGGTAAT+TGG | 0.258977 | 8_2:-44081866 | None:intergenic |
| TAGAGGATTATTTAAAGTTC+TGG | 0.291908 | 8_2:-44081939 | None:intergenic |
| GTATCTGCTTTCGGCGCTGC+AGG | 0.317922 | 8_2:+44082277 | Msa1249420:CDS |
| TCTGTTGGAACTAGAAATTT+AGG | 0.321437 | 8_2:+44081995 | Msa1249420:CDS |
| AGGCTTCCGGTTCTTATCAT+TGG | 0.328156 | 8_2:+44081159 | Msa1249420:CDS |
| ATGGTATTGGACCAGTTTCT+TGG | 0.328363 | 8_2:+44082329 | Msa1249420:CDS |
| CCGGGAGCAGTCAGAATTCC+TGG | 0.337631 | 8_2:-44082106 | None:intergenic |
| GATCATCCAGCCCCACTTGC+TGG | 0.353540 | 8_2:+44082202 | Msa1249420:CDS |
| ATGAGCAGGTTATTTCTTAT+GGG | 0.354456 | 8_2:+44081662 | Msa1249420:intron |
| TCTTTCTTTCTTCTCTTTCG+TGG | 0.354521 | 8_2:-44081798 | None:intergenic |
| GGCATATTTGTCCAAGAAAC+TGG | 0.357689 | 8_2:-44082340 | None:intergenic |
| GATATCCACAACATTGAATC+TGG | 0.364726 | 8_2:+44081062 | Msa1249420:CDS |
| CTTATGGGCGTGGAGAAGTA+TGG | 0.382631 | 8_2:+44081677 | Msa1249420:CDS |
| GCTCCCGGACACATGGCTTA+TGG | 0.384505 | 8_2:+44082310 | Msa1249420:CDS |
| GGACACATGGCTTATGGTAT+TGG | 0.393934 | 8_2:+44082316 | Msa1249420:CDS |
| AGACGGGTTGTATCTGCTTT+CGG | 0.398815 | 8_2:+44082268 | Msa1249420:CDS |
| GCAGGGTTTCCTTCTGCTCC+CGG | 0.401027 | 8_2:+44082295 | Msa1249420:CDS |
| CCAGCCCCACTTGCTGGACT+CGG | 0.416423 | 8_2:+44082208 | Msa1249420:CDS |
| ATAGGCGACATCGTGTATTC+TGG | 0.417387 | 8_2:-44081828 | None:intergenic |
| TGCAGAATCGCTTGCTTGAC+CGG | 0.418407 | 8_2:-44081873 | None:intergenic |
| AACAGCATCCTCGGGATGAT+TGG | 0.418808 | 8_2:-44080958 | None:intergenic |
| TTCTGTCCAATGATAAGAAC+CGG | 0.425400 | 8_2:-44081165 | None:intergenic |
| GATACAACCAGTCCTTCTAT+AGG | 0.426589 | 8_2:-44082070 | None:intergenic |
| AGAAGTATGGAAAGGGTAAA+TGG | 0.436340 | 8_2:+44081690 | Msa1249420:CDS |
| CCTTGGATCGGGCAACCTAT+AGG | 0.440600 | 8_2:+44082244 | Msa1249420:CDS |
| GCCAGGGGTACCAATGAACT+TGG | 0.443338 | 8_2:+44082360 | Msa1249420:CDS |
| AAAACTCCAGCACGTGGGAT+TGG | 0.444600 | 8_2:-44082025 | None:intergenic |
| GTTTATGATGTGCCTTGGAT+CGG | 0.445975 | 8_2:+44082232 | Msa1249420:CDS |
| CCGAGTCCAGCAAGTGGGGC+TGG | 0.451356 | 8_2:-44082208 | None:intergenic |
| GATACAACCCGTCTTCCTAT+AGG | 0.454270 | 8_2:-44082259 | None:intergenic |
| CCATCGATCAACAGCATCCT+CGG | 0.458092 | 8_2:-44080967 | None:intergenic |
| GTATCTGAAGTTGGCACTCC+AGG | 0.458167 | 8_2:+44082088 | Msa1249420:CDS |
| TCCTTCTGCTCCCGGACACA+TGG | 0.459304 | 8_2:+44082303 | Msa1249420:CDS |
| AAAATTGCGGCTGATGTGCC+CGG | 0.461117 | 8_2:+44080993 | Msa1249420:CDS |
| TTTATGATGTGCCTTGGATC+GGG | 0.462141 | 8_2:+44082233 | Msa1249420:CDS |
| AGAGAGGACCAACCTATAGA+AGG | 0.463714 | 8_2:+44082058 | Msa1249420:CDS |
| AATTTCTGGTTCCAGAAGGC+GGG | 0.463924 | 8_2:-44082174 | None:intergenic |
| AAACCTCAAGGACCAATTAC+CGG | 0.466468 | 8_2:+44081854 | Msa1249420:CDS |
| TCAAAGCGTGCTGGTGAAAG+AGG | 0.472166 | 8_2:+44081116 | Msa1249420:CDS |
| GTCATAGGACCCAAGTTCAT+TGG | 0.473573 | 8_2:-44082370 | None:intergenic |
| CCCAAGTTCATTGGTACCCC+TGG | 0.474063 | 8_2:-44082361 | None:intergenic |
| TCGGAGTTTATGATGTGCCT+TGG | 0.477536 | 8_2:+44082227 | Msa1249420:CDS |
| TCTATAGGTTGGTCCTCTCT+AGG | 0.479408 | 8_2:-44082055 | None:intergenic |
| TATCTGCTTTCGGCGCTGCA+GGG | 0.484566 | 8_2:+44082278 | Msa1249420:CDS |
| CCAGGAATTCTGACTGCTCC+CGG | 0.491706 | 8_2:+44082106 | Msa1249420:CDS |
| GAAAGAGGAGCTGTGAAAAC+GGG | 0.496932 | 8_2:+44081131 | Msa1249420:CDS |
| AAAACGGGAACTAAGGCTTC+CGG | 0.497027 | 8_2:+44081146 | Msa1249420:CDS |
| AGCTGTGAAAACGGGAACTA+AGG | 0.497529 | 8_2:+44081139 | Msa1249420:CDS |
| CAGGTTATTTCTTATGGGCG+TGG | 0.501373 | 8_2:+44081667 | Msa1249420:intron |
| TAAATTGTTCGAAAATGCAT+TGG | 0.509004 | 8_2:+44080935 | Msa1249420:CDS |
| ACTCCAGCACGTGGGATTGG+AGG | 0.509106 | 8_2:-44082022 | None:intergenic |
| AATCAAAATAATGGATGAAG+TGG | 0.514101 | 8_2:+44080878 | None:intergenic |
| TGAAAGAGGAGCTGTGAAAA+CGG | 0.514444 | 8_2:+44081130 | Msa1249420:CDS |
| AATACCATAAGCCATGTGTC+CGG | 0.520964 | 8_2:-44082314 | None:intergenic |
| TATGCTGCTTTGCCATCTGT+TGG | 0.524271 | 8_2:+44081980 | Msa1249420:CDS |
| CGAGGATGCTGTTGATCGAT+GGG | 0.525087 | 8_2:+44080968 | Msa1249420:CDS |
| CCGAGGATGCTGTTGATCGA+TGG | 0.525902 | 8_2:+44080967 | Msa1249420:CDS |
| CGAAAGAGAAGAAAGAAAGA+AGG | 0.527182 | 8_2:+44081801 | Msa1249420:CDS |
| GGCGTGGAGAAGTATGGAAA+GGG | 0.531559 | 8_2:+44081683 | Msa1249420:CDS |
| TGGCAAAGCAGCATACATTC+CGG | 0.533982 | 8_2:-44081972 | None:intergenic |
| AAAGTTCTGGTACCAACAGA+TGG | 0.539373 | 8_2:-44081926 | None:intergenic |
| GCCATGTGTCCGGGAGCAGA+AGG | 0.540860 | 8_2:-44082304 | None:intergenic |
| GTTTCTTGGACAAATATGCC+AGG | 0.542042 | 8_2:+44082343 | Msa1249420:CDS |
| AATCCTCCAATCCCACGTGC+TGG | 0.542954 | 8_2:+44082019 | Msa1249420:CDS |
| GCTTGAGGAGCATAAACTCC+GGG | 0.545991 | 8_2:-44082124 | None:intergenic |
| CATCGATCAACAGCATCCTC+GGG | 0.548607 | 8_2:-44080966 | None:intergenic |
| CATGCTCAGAAATACTTCAA+AGG | 0.551854 | 8_2:+44081767 | Msa1249420:CDS |
| GGACTGGTTGTATCTGAAGT+TGG | 0.551947 | 8_2:+44082079 | Msa1249420:CDS |
| ATACCATAAGCCATGTGTCC+GGG | 0.552377 | 8_2:-44082313 | None:intergenic |
| CCTATAGGTTGCCCGATCCA+AGG | 0.564457 | 8_2:-44082244 | None:intergenic |
| CAAAACCAGATTCAATGTTG+TGG | 0.566485 | 8_2:-44081067 | None:intergenic |
| AATCCTCTAGCTCCACCTGC+CGG | 0.568098 | 8_2:+44081953 | Msa1249420:CDS |
| AAATTTCTGGTTCCAGAAGG+CGG | 0.568201 | 8_2:-44082175 | None:intergenic |
| ATTTCAGTAGGTGGAGCTTG+AGG | 0.570653 | 8_2:-44082139 | None:intergenic |
| GGACCAACCTATAGAAGGAC+TGG | 0.574880 | 8_2:+44082063 | Msa1249420:CDS |
| CAACCAGTCCTTCTATAGGT+TGG | 0.576619 | 8_2:-44082066 | None:intergenic |
| ATTCCGGCAGGTGGAGCTAG+AGG | 0.580304 | 8_2:-44081956 | None:intergenic |
| TGGTCCTTGAGGTTTGACAT+AGG | 0.583815 | 8_2:-44081846 | None:intergenic |
| AAAGAATCATAATCTGGCAG+AGG | 0.587497 | 8_2:-44081092 | None:intergenic |
| AAAGCAGCATACATTCCGGC+AGG | 0.587858 | 8_2:-44081968 | None:intergenic |
| AAATTTCTAGTTCCAACAGA+TGG | 0.588745 | 8_2:-44081992 | None:intergenic |
| ATTTCTGGTTCCAGAAGGCG+GGG | 0.590827 | 8_2:-44082173 | None:intergenic |
| TTTCTTGGACAAATATGCCA+GGG | 0.593394 | 8_2:+44082344 | Msa1249420:CDS |
| GCAGCATACATTCCGGCAGG+TGG | 0.596107 | 8_2:-44081965 | None:intergenic |
| GTACCAACAGATGGAGCTTG+AGG | 0.598203 | 8_2:-44081917 | None:intergenic |
| AAATTGCGGCTGATGTGCCC+GGG | 0.599032 | 8_2:+44080994 | Msa1249420:CDS |
| GCAACATACATTTCAGTAGG+TGG | 0.602800 | 8_2:-44082148 | None:intergenic |
| TCTAAATTTCTGGTTCCAGA+AGG | 0.603646 | 8_2:-44082178 | None:intergenic |
| GGGCGTGGAGAAGTATGGAA+AGG | 0.603697 | 8_2:+44081682 | Msa1249420:CDS |
| TCGGGCAACCTATAGGAAGA+CGG | 0.605588 | 8_2:+44082251 | Msa1249420:CDS |
| ATCAAAATAATGGATGAAGT+GGG | 0.606623 | 8_2:+44080879 | None:intergenic |
| ACTCCTCAAGCTCCATCTGT+TGG | 0.611272 | 8_2:+44081914 | Msa1249420:CDS |
| AAACTCCGAGTCCAGCAAGT+GGG | 0.613833 | 8_2:-44082213 | None:intergenic |
| GTCGCCTATGTCAAACCTCA+AGG | 0.619811 | 8_2:+44081842 | Msa1249420:CDS |
| GCAGCAACATACATTTCAGT+AGG | 0.620747 | 8_2:-44082151 | None:intergenic |
| GGAGCGAAAACTCCAGCACG+TGG | 0.621781 | 8_2:-44082031 | None:intergenic |
| AGCTTGAGGAGCATAAACTC+CGG | 0.627574 | 8_2:-44082125 | None:intergenic |
| TGACCGGTAATTGGTCCTTG+AGG | 0.631213 | 8_2:-44081857 | None:intergenic |
| ATAGGTTGGTCCTCTCTAGG+AGG | 0.636784 | 8_2:-44082052 | None:intergenic |
| AACTCCGAGTCCAGCAAGTG+GGG | 0.637926 | 8_2:-44082212 | None:intergenic |
| TGGAGCTTGAGGAGTTTGTG+TGG | 0.647801 | 8_2:-44081906 | None:intergenic |
| CCAGGGGTACCAATGAACTT+GGG | 0.650736 | 8_2:+44082361 | Msa1249420:CDS |
| TGCATTGGCCAATCATCCCG+AGG | 0.663855 | 8_2:+44080950 | Msa1249420:CDS |
| TGGGTAGTAGAAGCTATGAG+TGG | 0.665232 | 8_2:+44080898 | Msa1249420:CDS |
| TTCTTGGACAAATATGCCAG+GGG | 0.665492 | 8_2:+44082345 | Msa1249420:CDS |
| TAAACTCCGAGTCCAGCAAG+TGG | 0.668326 | 8_2:-44082214 | None:intergenic |
| TGATCGATGGGAGAAAATTG+CGG | 0.690864 | 8_2:+44080980 | Msa1249420:CDS |
| ATTGGACAGAAGATGAACAC+AGG | 0.692851 | 8_2:+44081177 | Msa1249420:CDS |
| GAGCGAAAACTCCAGCACGT+GGG | 0.731040 | 8_2:-44082030 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTATTATTTACAACTTAAA+TGG | + | chr8_2:44081229-44081248 | Msa1249420:intron | 15.0% |
| !! | TGTTAAAAACATAATAATGA+AGG | + | chr8_2:44081253-44081272 | Msa1249420:intron | 15.0% |
| !! | ATATAATAATTCCTTATACA+TGG | - | chr8_2:44081445-44081464 | None:intergenic | 15.0% |
| !!! | ATTAACTTAATTATTTCTAG+AGG | + | chr8_2:44081497-44081516 | Msa1249420:intron | 15.0% |
| !! | GTTATTATTTACAACTTAAA+TGG | + | chr8_2:44081229-44081248 | Msa1249420:intron | 15.0% |
| !! | TGTTAAAAACATAATAATGA+AGG | + | chr8_2:44081253-44081272 | Msa1249420:intron | 15.0% |
| !! | ATATAATAATTCCTTATACA+TGG | - | chr8_2:44081445-44081464 | None:intergenic | 15.0% |
| !!! | ATTAACTTAATTATTTCTAG+AGG | + | chr8_2:44081497-44081516 | Msa1249420:intron | 15.0% |
| !! | TTTGAAAAAGAATCATAATC+TGG | - | chr8_2:44081101-44081120 | None:intergenic | 20.0% |
| !! | CACACAAATATATATTGATA+CGG | - | chr8_2:44081554-44081573 | None:intergenic | 20.0% |
| !! | AAAAATATCAGAGAATTATG+TGG | + | chr8_2:44081715-44081734 | Msa1249420:CDS | 20.0% |
| !! | TTTGAAAAAGAATCATAATC+TGG | - | chr8_2:44081101-44081120 | None:intergenic | 20.0% |
| !! | CACACAAATATATATTGATA+CGG | - | chr8_2:44081554-44081573 | None:intergenic | 20.0% |
| !! | AAAAATATCAGAGAATTATG+TGG | + | chr8_2:44081715-44081734 | Msa1249420:CDS | 20.0% |
| ! | TAAATTGTTCGAAAATGCAT+TGG | + | chr8_2:44080935-44080954 | Msa1249420:CDS | 25.0% |
| !! | TAAACATCACTATGAGATTT+TGG | + | chr8_2:44081034-44081053 | Msa1249420:CDS | 25.0% |
| !! | GTTTCTTGAATTAGTTTCAT+TGG | + | chr8_2:44081342-44081361 | Msa1249420:intron | 25.0% |
| ! | ACTCCTTCAACATAAAAAAA+AGG | + | chr8_2:44081365-44081384 | Msa1249420:intron | 25.0% |
| !!! | AGCACTTTTTCAATTATGAA+AGG | - | chr8_2:44081413-44081432 | None:intergenic | 25.0% |
| ! | CTAATTGTAATCCATGTATA+AGG | + | chr8_2:44081431-44081450 | Msa1249420:intron | 25.0% |
| !!! | ATTTTTCAAATTTGATGAGC+AGG | + | chr8_2:44081648-44081667 | Msa1249420:intron | 25.0% |
| !! | TAGAGGATTATTTAAAGTTC+TGG | - | chr8_2:44081942-44081961 | None:intergenic | 25.0% |
| ! | TAAATTGTTCGAAAATGCAT+TGG | + | chr8_2:44080935-44080954 | Msa1249420:CDS | 25.0% |
| !! | TAAACATCACTATGAGATTT+TGG | + | chr8_2:44081034-44081053 | Msa1249420:CDS | 25.0% |
| !! | GTTTCTTGAATTAGTTTCAT+TGG | + | chr8_2:44081342-44081361 | Msa1249420:intron | 25.0% |
| ! | ACTCCTTCAACATAAAAAAA+AGG | + | chr8_2:44081365-44081384 | Msa1249420:intron | 25.0% |
| !!! | AGCACTTTTTCAATTATGAA+AGG | - | chr8_2:44081413-44081432 | None:intergenic | 25.0% |
| ! | CTAATTGTAATCCATGTATA+AGG | + | chr8_2:44081431-44081450 | Msa1249420:intron | 25.0% |
| !!! | ATTTTTCAAATTTGATGAGC+AGG | + | chr8_2:44081648-44081667 | Msa1249420:intron | 25.0% |
| !! | TAGAGGATTATTTAAAGTTC+TGG | - | chr8_2:44081942-44081961 | None:intergenic | 25.0% |
| !!! | AATCTCTTCTAAAGTTTTCC+CGG | - | chr8_2:44081015-44081034 | None:intergenic | 30.0% |
| ! | ATTATCTCTAGTGCTAGTTT+AGG | + | chr8_2:44081305-44081324 | Msa1249420:intron | 30.0% |
| ! | TTATCTCTAGTGCTAGTTTA+GGG | + | chr8_2:44081306-44081325 | Msa1249420:intron | 30.0% |
| !!! | ACGCCTTTTTTTTATGTTGA+AGG | - | chr8_2:44081371-44081390 | None:intergenic | 30.0% |
| TTACAACAAAGCTTAGCATA+TGG | - | chr8_2:44081593-44081612 | None:intergenic | 30.0% | |
| !! | ATGAGCAGGTTATTTCTTAT+GGG | + | chr8_2:44081662-44081681 | Msa1249420:intron | 30.0% |
| !! | AAATTTCTAGTTCCAACAGA+TGG | - | chr8_2:44081995-44082014 | None:intergenic | 30.0% |
| TCTGTTGGAACTAGAAATTT+AGG | + | chr8_2:44081995-44082014 | Msa1249420:CDS | 30.0% | |
| TGGATGATCATCTAAATTTC+TGG | - | chr8_2:44082191-44082210 | None:intergenic | 30.0% | |
| ! | TGAGCAAATGTATTTTGCAT+GGG | - | chr8_2:44082400-44082419 | None:intergenic | 30.0% |
| !!! | AATCTCTTCTAAAGTTTTCC+CGG | - | chr8_2:44081015-44081034 | None:intergenic | 30.0% |
| ! | ATTATCTCTAGTGCTAGTTT+AGG | + | chr8_2:44081305-44081324 | Msa1249420:intron | 30.0% |
| ! | TTATCTCTAGTGCTAGTTTA+GGG | + | chr8_2:44081306-44081325 | Msa1249420:intron | 30.0% |
| !!! | ACGCCTTTTTTTTATGTTGA+AGG | - | chr8_2:44081371-44081390 | None:intergenic | 30.0% |
| TTACAACAAAGCTTAGCATA+TGG | - | chr8_2:44081593-44081612 | None:intergenic | 30.0% | |
| !! | ATGAGCAGGTTATTTCTTAT+GGG | + | chr8_2:44081662-44081681 | Msa1249420:intron | 30.0% |
| !! | AAATTTCTAGTTCCAACAGA+TGG | - | chr8_2:44081995-44082014 | None:intergenic | 30.0% |
| TCTGTTGGAACTAGAAATTT+AGG | + | chr8_2:44081995-44082014 | Msa1249420:CDS | 30.0% | |
| TGGATGATCATCTAAATTTC+TGG | - | chr8_2:44082191-44082210 | None:intergenic | 30.0% | |
| ! | TGAGCAAATGTATTTTGCAT+GGG | - | chr8_2:44082400-44082419 | None:intergenic | 30.0% |
| !!! | ATCTCTTCTAAAGTTTTCCC+GGG | - | chr8_2:44081014-44081033 | None:intergenic | 35.0% |
| GATATCCACAACATTGAATC+TGG | + | chr8_2:44081062-44081081 | Msa1249420:CDS | 35.0% | |
| CAAAACCAGATTCAATGTTG+TGG | - | chr8_2:44081070-44081089 | None:intergenic | 35.0% | |
| AAAGAATCATAATCTGGCAG+AGG | - | chr8_2:44081095-44081114 | None:intergenic | 35.0% | |
| TTCTGTCCAATGATAAGAAC+CGG | - | chr8_2:44081168-44081187 | None:intergenic | 35.0% | |
| ! | TAGTGCTAGTTTAGGGTTTA+GGG | + | chr8_2:44081313-44081332 | Msa1249420:intron | 35.0% |
| !! | GATGAGCAGGTTATTTCTTA+TGG | + | chr8_2:44081661-44081680 | Msa1249420:intron | 35.0% |
| ! | AGAAGTATGGAAAGGGTAAA+TGG | + | chr8_2:44081690-44081709 | Msa1249420:CDS | 35.0% |
| CATGCTCAGAAATACTTCAA+AGG | + | chr8_2:44081767-44081786 | Msa1249420:CDS | 35.0% | |
| TCTTTCTTTCTTCTCTTTCG+TGG | - | chr8_2:44081801-44081820 | None:intergenic | 35.0% | |
| CGAAAGAGAAGAAAGAAAGA+AGG | + | chr8_2:44081801-44081820 | Msa1249420:CDS | 35.0% | |
| !! | TCTAAATTTCTGGTTCCAGA+AGG | - | chr8_2:44082181-44082200 | None:intergenic | 35.0% |
| TTTCTTGGACAAATATGCCA+GGG | + | chr8_2:44082344-44082363 | Msa1249420:CDS | 35.0% | |
| ! | TTTTGCATGGGAAATGTCAT+AGG | - | chr8_2:44082388-44082407 | None:intergenic | 35.0% |
| ! | GTGAGCAAATGTATTTTGCA+TGG | - | chr8_2:44082401-44082420 | None:intergenic | 35.0% |
| !!! | ATCTCTTCTAAAGTTTTCCC+GGG | - | chr8_2:44081014-44081033 | None:intergenic | 35.0% |
| GATATCCACAACATTGAATC+TGG | + | chr8_2:44081062-44081081 | Msa1249420:CDS | 35.0% | |
| CAAAACCAGATTCAATGTTG+TGG | - | chr8_2:44081070-44081089 | None:intergenic | 35.0% | |
| AAAGAATCATAATCTGGCAG+AGG | - | chr8_2:44081095-44081114 | None:intergenic | 35.0% | |
| TTCTGTCCAATGATAAGAAC+CGG | - | chr8_2:44081168-44081187 | None:intergenic | 35.0% | |
| ! | TAGTGCTAGTTTAGGGTTTA+GGG | + | chr8_2:44081313-44081332 | Msa1249420:intron | 35.0% |
| !! | GATGAGCAGGTTATTTCTTA+TGG | + | chr8_2:44081661-44081680 | Msa1249420:intron | 35.0% |
| ! | AGAAGTATGGAAAGGGTAAA+TGG | + | chr8_2:44081690-44081709 | Msa1249420:CDS | 35.0% |
| CATGCTCAGAAATACTTCAA+AGG | + | chr8_2:44081767-44081786 | Msa1249420:CDS | 35.0% | |
| TCTTTCTTTCTTCTCTTTCG+TGG | - | chr8_2:44081801-44081820 | None:intergenic | 35.0% | |
| CGAAAGAGAAGAAAGAAAGA+AGG | + | chr8_2:44081801-44081820 | Msa1249420:CDS | 35.0% | |
| !! | TCTAAATTTCTGGTTCCAGA+AGG | - | chr8_2:44082181-44082200 | None:intergenic | 35.0% |
| TTTCTTGGACAAATATGCCA+GGG | + | chr8_2:44082344-44082363 | Msa1249420:CDS | 35.0% | |
| ! | TTTTGCATGGGAAATGTCAT+AGG | - | chr8_2:44082388-44082407 | None:intergenic | 35.0% |
| ! | GTGAGCAAATGTATTTTGCA+TGG | - | chr8_2:44082401-44082420 | None:intergenic | 35.0% |
| TGATCGATGGGAGAAAATTG+CGG | + | chr8_2:44080980-44080999 | Msa1249420:CDS | 40.0% | |
| !!! | GATTCTTTTTCAAAGCGTGC+TGG | + | chr8_2:44081107-44081126 | Msa1249420:CDS | 40.0% |
| TGAAAGAGGAGCTGTGAAAA+CGG | + | chr8_2:44081130-44081149 | Msa1249420:CDS | 40.0% | |
| ATTGGACAGAAGATGAACAC+AGG | + | chr8_2:44081177-44081196 | Msa1249420:CDS | 40.0% | |
| ! | CTAGTGCTAGTTTAGGGTTT+AGG | + | chr8_2:44081312-44081331 | Msa1249420:intron | 40.0% |
| AAACCTCAAGGACCAATTAC+CGG | + | chr8_2:44081854-44081873 | Msa1249420:CDS | 40.0% | |
| ! | AAAGTTCTGGTACCAACAGA+TGG | - | chr8_2:44081929-44081948 | None:intergenic | 40.0% |
| GATACAACCAGTCCTTCTAT+AGG | - | chr8_2:44082073-44082092 | None:intergenic | 40.0% | |
| GCAACATACATTTCAGTAGG+TGG | - | chr8_2:44082151-44082170 | None:intergenic | 40.0% | |
| GCAGCAACATACATTTCAGT+AGG | - | chr8_2:44082154-44082173 | None:intergenic | 40.0% | |
| !! | AAATTTCTGGTTCCAGAAGG+CGG | - | chr8_2:44082178-44082197 | None:intergenic | 40.0% |
| GTTTATGATGTGCCTTGGAT+CGG | + | chr8_2:44082232-44082251 | Msa1249420:CDS | 40.0% | |
| TTTATGATGTGCCTTGGATC+GGG | + | chr8_2:44082233-44082252 | Msa1249420:CDS | 40.0% | |
| AATACCATAAGCCATGTGTC+CGG | - | chr8_2:44082317-44082336 | None:intergenic | 40.0% | |
| ! | ATGGTATTGGACCAGTTTCT+TGG | + | chr8_2:44082329-44082348 | Msa1249420:CDS | 40.0% |
| GGCATATTTGTCCAAGAAAC+TGG | - | chr8_2:44082343-44082362 | None:intergenic | 40.0% | |
| GTTTCTTGGACAAATATGCC+AGG | + | chr8_2:44082343-44082362 | Msa1249420:CDS | 40.0% | |
| TTCTTGGACAAATATGCCAG+GGG | + | chr8_2:44082345-44082364 | Msa1249420:CDS | 40.0% | |
| TGATCGATGGGAGAAAATTG+CGG | + | chr8_2:44080980-44080999 | Msa1249420:CDS | 40.0% | |
| !!! | GATTCTTTTTCAAAGCGTGC+TGG | + | chr8_2:44081107-44081126 | Msa1249420:CDS | 40.0% |
| TGAAAGAGGAGCTGTGAAAA+CGG | + | chr8_2:44081130-44081149 | Msa1249420:CDS | 40.0% | |
| ATTGGACAGAAGATGAACAC+AGG | + | chr8_2:44081177-44081196 | Msa1249420:CDS | 40.0% | |
| ! | CTAGTGCTAGTTTAGGGTTT+AGG | + | chr8_2:44081312-44081331 | Msa1249420:intron | 40.0% |
| AAACCTCAAGGACCAATTAC+CGG | + | chr8_2:44081854-44081873 | Msa1249420:CDS | 40.0% | |
| ! | AAAGTTCTGGTACCAACAGA+TGG | - | chr8_2:44081929-44081948 | None:intergenic | 40.0% |
| GATACAACCAGTCCTTCTAT+AGG | - | chr8_2:44082073-44082092 | None:intergenic | 40.0% | |
| GCAACATACATTTCAGTAGG+TGG | - | chr8_2:44082151-44082170 | None:intergenic | 40.0% | |
| GCAGCAACATACATTTCAGT+AGG | - | chr8_2:44082154-44082173 | None:intergenic | 40.0% | |
| !! | AAATTTCTGGTTCCAGAAGG+CGG | - | chr8_2:44082178-44082197 | None:intergenic | 40.0% |
| GTTTATGATGTGCCTTGGAT+CGG | + | chr8_2:44082232-44082251 | Msa1249420:CDS | 40.0% | |
| TTTATGATGTGCCTTGGATC+GGG | + | chr8_2:44082233-44082252 | Msa1249420:CDS | 40.0% | |
| AATACCATAAGCCATGTGTC+CGG | - | chr8_2:44082317-44082336 | None:intergenic | 40.0% | |
| ! | ATGGTATTGGACCAGTTTCT+TGG | + | chr8_2:44082329-44082348 | Msa1249420:CDS | 40.0% |
| GGCATATTTGTCCAAGAAAC+TGG | - | chr8_2:44082343-44082362 | None:intergenic | 40.0% | |
| GTTTCTTGGACAAATATGCC+AGG | + | chr8_2:44082343-44082362 | Msa1249420:CDS | 40.0% | |
| TTCTTGGACAAATATGCCAG+GGG | + | chr8_2:44082345-44082364 | Msa1249420:CDS | 40.0% | |
| TGGGTAGTAGAAGCTATGAG+TGG | + | chr8_2:44080898-44080917 | Msa1249420:CDS | 45.0% | |
| GAAAGAGGAGCTGTGAAAAC+GGG | + | chr8_2:44081131-44081150 | Msa1249420:CDS | 45.0% | |
| AGCTGTGAAAACGGGAACTA+AGG | + | chr8_2:44081139-44081158 | Msa1249420:CDS | 45.0% | |
| AAAACGGGAACTAAGGCTTC+CGG | + | chr8_2:44081146-44081165 | Msa1249420:CDS | 45.0% | |
| AGGCTTCCGGTTCTTATCAT+TGG | + | chr8_2:44081159-44081178 | Msa1249420:CDS | 45.0% | |
| ! | GAAGGCATACACAAGTAGCA+AGG | + | chr8_2:44081271-44081290 | Msa1249420:intron | 45.0% |
| CAACCACTAATCCTAGCTAG+TGG | - | chr8_2:44081530-44081549 | None:intergenic | 45.0% | |
| !! | CAGGTTATTTCTTATGGGCG+TGG | + | chr8_2:44081667-44081686 | Msa1249420:intron | 45.0% |
| ATAGGCGACATCGTGTATTC+TGG | - | chr8_2:44081831-44081850 | None:intergenic | 45.0% | |
| TGGTCCTTGAGGTTTGACAT+AGG | - | chr8_2:44081849-44081868 | None:intergenic | 45.0% | |
| TGGCAAAGCAGCATACATTC+CGG | - | chr8_2:44081975-44081994 | None:intergenic | 45.0% | |
| !! | TATGCTGCTTTGCCATCTGT+TGG | + | chr8_2:44081980-44081999 | Msa1249420:CDS | 45.0% |
| !! | TCTATAGGTTGGTCCTCTCT+AGG | - | chr8_2:44082058-44082077 | None:intergenic | 45.0% |
| AGAGAGGACCAACCTATAGA+AGG | + | chr8_2:44082058-44082077 | Msa1249420:CDS | 45.0% | |
| CAACCAGTCCTTCTATAGGT+TGG | - | chr8_2:44082069-44082088 | None:intergenic | 45.0% | |
| !! | GGACTGGTTGTATCTGAAGT+TGG | + | chr8_2:44082079-44082098 | Msa1249420:CDS | 45.0% |
| ! | AGCTTGAGGAGCATAAACTC+CGG | - | chr8_2:44082128-44082147 | None:intergenic | 45.0% |
| ATTTCAGTAGGTGGAGCTTG+AGG | - | chr8_2:44082142-44082161 | None:intergenic | 45.0% | |
| !! | AATTTCTGGTTCCAGAAGGC+GGG | - | chr8_2:44082177-44082196 | None:intergenic | 45.0% |
| TCGGAGTTTATGATGTGCCT+TGG | + | chr8_2:44082227-44082246 | Msa1249420:CDS | 45.0% | |
| GATACAACCCGTCTTCCTAT+AGG | - | chr8_2:44082262-44082281 | None:intergenic | 45.0% | |
| !! | AGACGGGTTGTATCTGCTTT+CGG | + | chr8_2:44082268-44082287 | Msa1249420:CDS | 45.0% |
| ATACCATAAGCCATGTGTCC+GGG | - | chr8_2:44082316-44082335 | None:intergenic | 45.0% | |
| GGACACATGGCTTATGGTAT+TGG | + | chr8_2:44082316-44082335 | Msa1249420:CDS | 45.0% | |
| GTCATAGGACCCAAGTTCAT+TGG | - | chr8_2:44082373-44082392 | None:intergenic | 45.0% | |
| TGGGTAGTAGAAGCTATGAG+TGG | + | chr8_2:44080898-44080917 | Msa1249420:CDS | 45.0% | |
| GAAAGAGGAGCTGTGAAAAC+GGG | + | chr8_2:44081131-44081150 | Msa1249420:CDS | 45.0% | |
| AGCTGTGAAAACGGGAACTA+AGG | + | chr8_2:44081139-44081158 | Msa1249420:CDS | 45.0% | |
| AAAACGGGAACTAAGGCTTC+CGG | + | chr8_2:44081146-44081165 | Msa1249420:CDS | 45.0% | |
| AGGCTTCCGGTTCTTATCAT+TGG | + | chr8_2:44081159-44081178 | Msa1249420:CDS | 45.0% | |
| ! | GAAGGCATACACAAGTAGCA+AGG | + | chr8_2:44081271-44081290 | Msa1249420:intron | 45.0% |
| CAACCACTAATCCTAGCTAG+TGG | - | chr8_2:44081530-44081549 | None:intergenic | 45.0% | |
| !! | CAGGTTATTTCTTATGGGCG+TGG | + | chr8_2:44081667-44081686 | Msa1249420:intron | 45.0% |
| ATAGGCGACATCGTGTATTC+TGG | - | chr8_2:44081831-44081850 | None:intergenic | 45.0% | |
| TGGTCCTTGAGGTTTGACAT+AGG | - | chr8_2:44081849-44081868 | None:intergenic | 45.0% | |
| TGGCAAAGCAGCATACATTC+CGG | - | chr8_2:44081975-44081994 | None:intergenic | 45.0% | |
| !! | TATGCTGCTTTGCCATCTGT+TGG | + | chr8_2:44081980-44081999 | Msa1249420:CDS | 45.0% |
| !! | TCTATAGGTTGGTCCTCTCT+AGG | - | chr8_2:44082058-44082077 | None:intergenic | 45.0% |
| AGAGAGGACCAACCTATAGA+AGG | + | chr8_2:44082058-44082077 | Msa1249420:CDS | 45.0% | |
| CAACCAGTCCTTCTATAGGT+TGG | - | chr8_2:44082069-44082088 | None:intergenic | 45.0% | |
| !! | GGACTGGTTGTATCTGAAGT+TGG | + | chr8_2:44082079-44082098 | Msa1249420:CDS | 45.0% |
| ! | AGCTTGAGGAGCATAAACTC+CGG | - | chr8_2:44082128-44082147 | None:intergenic | 45.0% |
| ATTTCAGTAGGTGGAGCTTG+AGG | - | chr8_2:44082142-44082161 | None:intergenic | 45.0% | |
| !! | AATTTCTGGTTCCAGAAGGC+GGG | - | chr8_2:44082177-44082196 | None:intergenic | 45.0% |
| TCGGAGTTTATGATGTGCCT+TGG | + | chr8_2:44082227-44082246 | Msa1249420:CDS | 45.0% | |
| GATACAACCCGTCTTCCTAT+AGG | - | chr8_2:44082262-44082281 | None:intergenic | 45.0% | |
| !! | AGACGGGTTGTATCTGCTTT+CGG | + | chr8_2:44082268-44082287 | Msa1249420:CDS | 45.0% |
| ATACCATAAGCCATGTGTCC+GGG | - | chr8_2:44082316-44082335 | None:intergenic | 45.0% | |
| GGACACATGGCTTATGGTAT+TGG | + | chr8_2:44082316-44082335 | Msa1249420:CDS | 45.0% | |
| GTCATAGGACCCAAGTTCAT+TGG | - | chr8_2:44082373-44082392 | None:intergenic | 45.0% | |
| AACAGCATCCTCGGGATGAT+TGG | - | chr8_2:44080961-44080980 | None:intergenic | 50.0% | |
| CATCGATCAACAGCATCCTC+GGG | - | chr8_2:44080969-44080988 | None:intergenic | 50.0% | |
| CCATCGATCAACAGCATCCT+CGG | - | chr8_2:44080970-44080989 | None:intergenic | 50.0% | |
| CGAGGATGCTGTTGATCGAT+GGG | + | chr8_2:44080968-44080987 | Msa1249420:CDS | 50.0% | |
| AAAATTGCGGCTGATGTGCC+CGG | + | chr8_2:44080993-44081012 | Msa1249420:CDS | 50.0% | |
| ! | TCAAAGCGTGCTGGTGAAAG+AGG | + | chr8_2:44081116-44081135 | Msa1249420:CDS | 50.0% |
| GAGGTTATCGTCCACTAGCT+AGG | + | chr8_2:44081516-44081535 | Msa1249420:intron | 50.0% | |
| CGTCCACTAGCTAGGATTAG+TGG | + | chr8_2:44081524-44081543 | Msa1249420:intron | 50.0% | |
| CTTATGGGCGTGGAGAAGTA+TGG | + | chr8_2:44081677-44081696 | Msa1249420:CDS | 50.0% | |
| ! | GGCGTGGAGAAGTATGGAAA+GGG | + | chr8_2:44081683-44081702 | Msa1249420:CDS | 50.0% |
| GTCGCCTATGTCAAACCTCA+AGG | + | chr8_2:44081842-44081861 | Msa1249420:CDS | 50.0% | |
| TGACCGGTAATTGGTCCTTG+AGG | - | chr8_2:44081860-44081879 | None:intergenic | 50.0% | |
| TCGCTTGCTTGACCGGTAAT+TGG | - | chr8_2:44081869-44081888 | None:intergenic | 50.0% | |
| TGCAGAATCGCTTGCTTGAC+CGG | - | chr8_2:44081876-44081895 | None:intergenic | 50.0% | |
| TGGAGCTTGAGGAGTTTGTG+TGG | - | chr8_2:44081909-44081928 | None:intergenic | 50.0% | |
| ACTCCTCAAGCTCCATCTGT+TGG | + | chr8_2:44081914-44081933 | Msa1249420:CDS | 50.0% | |
| GTACCAACAGATGGAGCTTG+AGG | - | chr8_2:44081920-44081939 | None:intergenic | 50.0% | |
| AAAGCAGCATACATTCCGGC+AGG | - | chr8_2:44081971-44081990 | None:intergenic | 50.0% | |
| AAAACTCCAGCACGTGGGAT+TGG | - | chr8_2:44082028-44082047 | None:intergenic | 50.0% | |
| ! | AGTTTTCGCTCCTCCTAGAG+AGG | + | chr8_2:44082042-44082061 | Msa1249420:CDS | 50.0% |
| !! | ATAGGTTGGTCCTCTCTAGG+AGG | - | chr8_2:44082055-44082074 | None:intergenic | 50.0% |
| GGACCAACCTATAGAAGGAC+TGG | + | chr8_2:44082063-44082082 | Msa1249420:CDS | 50.0% | |
| ! | GTATCTGAAGTTGGCACTCC+AGG | + | chr8_2:44082088-44082107 | Msa1249420:CDS | 50.0% |
| ! | GCTTGAGGAGCATAAACTCC+GGG | - | chr8_2:44082127-44082146 | None:intergenic | 50.0% |
| !! | ATTTCTGGTTCCAGAAGGCG+GGG | - | chr8_2:44082176-44082195 | None:intergenic | 50.0% |
| AAACTCCGAGTCCAGCAAGT+GGG | - | chr8_2:44082216-44082235 | None:intergenic | 50.0% | |
| TAAACTCCGAGTCCAGCAAG+TGG | - | chr8_2:44082217-44082236 | None:intergenic | 50.0% | |
| TCGGGCAACCTATAGGAAGA+CGG | + | chr8_2:44082251-44082270 | Msa1249420:CDS | 50.0% | |
| !! | CCAGGGGTACCAATGAACTT+GGG | + | chr8_2:44082361-44082380 | Msa1249420:CDS | 50.0% |
| AACAGCATCCTCGGGATGAT+TGG | - | chr8_2:44080961-44080980 | None:intergenic | 50.0% | |
| CATCGATCAACAGCATCCTC+GGG | - | chr8_2:44080969-44080988 | None:intergenic | 50.0% | |
| CCATCGATCAACAGCATCCT+CGG | - | chr8_2:44080970-44080989 | None:intergenic | 50.0% | |
| CGAGGATGCTGTTGATCGAT+GGG | + | chr8_2:44080968-44080987 | Msa1249420:CDS | 50.0% | |
| AAAATTGCGGCTGATGTGCC+CGG | + | chr8_2:44080993-44081012 | Msa1249420:CDS | 50.0% | |
| ! | TCAAAGCGTGCTGGTGAAAG+AGG | + | chr8_2:44081116-44081135 | Msa1249420:CDS | 50.0% |
| GAGGTTATCGTCCACTAGCT+AGG | + | chr8_2:44081516-44081535 | Msa1249420:intron | 50.0% | |
| CGTCCACTAGCTAGGATTAG+TGG | + | chr8_2:44081524-44081543 | Msa1249420:intron | 50.0% | |
| CTTATGGGCGTGGAGAAGTA+TGG | + | chr8_2:44081677-44081696 | Msa1249420:CDS | 50.0% | |
| ! | GGCGTGGAGAAGTATGGAAA+GGG | + | chr8_2:44081683-44081702 | Msa1249420:CDS | 50.0% |
| GTCGCCTATGTCAAACCTCA+AGG | + | chr8_2:44081842-44081861 | Msa1249420:CDS | 50.0% | |
| TGACCGGTAATTGGTCCTTG+AGG | - | chr8_2:44081860-44081879 | None:intergenic | 50.0% | |
| TCGCTTGCTTGACCGGTAAT+TGG | - | chr8_2:44081869-44081888 | None:intergenic | 50.0% | |
| TGCAGAATCGCTTGCTTGAC+CGG | - | chr8_2:44081876-44081895 | None:intergenic | 50.0% | |
| TGGAGCTTGAGGAGTTTGTG+TGG | - | chr8_2:44081909-44081928 | None:intergenic | 50.0% | |
| ACTCCTCAAGCTCCATCTGT+TGG | + | chr8_2:44081914-44081933 | Msa1249420:CDS | 50.0% | |
| GTACCAACAGATGGAGCTTG+AGG | - | chr8_2:44081920-44081939 | None:intergenic | 50.0% | |
| AAAGCAGCATACATTCCGGC+AGG | - | chr8_2:44081971-44081990 | None:intergenic | 50.0% | |
| AAAACTCCAGCACGTGGGAT+TGG | - | chr8_2:44082028-44082047 | None:intergenic | 50.0% | |
| ! | AGTTTTCGCTCCTCCTAGAG+AGG | + | chr8_2:44082042-44082061 | Msa1249420:CDS | 50.0% |
| !! | ATAGGTTGGTCCTCTCTAGG+AGG | - | chr8_2:44082055-44082074 | None:intergenic | 50.0% |
| GGACCAACCTATAGAAGGAC+TGG | + | chr8_2:44082063-44082082 | Msa1249420:CDS | 50.0% | |
| ! | GTATCTGAAGTTGGCACTCC+AGG | + | chr8_2:44082088-44082107 | Msa1249420:CDS | 50.0% |
| ! | GCTTGAGGAGCATAAACTCC+GGG | - | chr8_2:44082127-44082146 | None:intergenic | 50.0% |
| !! | ATTTCTGGTTCCAGAAGGCG+GGG | - | chr8_2:44082176-44082195 | None:intergenic | 50.0% |
| AAACTCCGAGTCCAGCAAGT+GGG | - | chr8_2:44082216-44082235 | None:intergenic | 50.0% | |
| TAAACTCCGAGTCCAGCAAG+TGG | - | chr8_2:44082217-44082236 | None:intergenic | 50.0% | |
| TCGGGCAACCTATAGGAAGA+CGG | + | chr8_2:44082251-44082270 | Msa1249420:CDS | 50.0% | |
| !! | CCAGGGGTACCAATGAACTT+GGG | + | chr8_2:44082361-44082380 | Msa1249420:CDS | 50.0% |
| ! | TGCATTGGCCAATCATCCCG+AGG | + | chr8_2:44080950-44080969 | Msa1249420:CDS | 55.0% |
| CCGAGGATGCTGTTGATCGA+TGG | + | chr8_2:44080967-44080986 | Msa1249420:CDS | 55.0% | |
| AAATTGCGGCTGATGTGCCC+GGG | + | chr8_2:44080994-44081013 | Msa1249420:CDS | 55.0% | |
| ! | GGGCGTGGAGAAGTATGGAA+AGG | + | chr8_2:44081682-44081701 | Msa1249420:CDS | 55.0% |
| ! | AATCCTCTAGCTCCACCTGC+CGG | + | chr8_2:44081953-44081972 | Msa1249420:CDS | 55.0% |
| AATCCTCCAATCCCACGTGC+TGG | + | chr8_2:44082019-44082038 | Msa1249420:CDS | 55.0% | |
| GAGCGAAAACTCCAGCACGT+GGG | - | chr8_2:44082033-44082052 | None:intergenic | 55.0% | |
| CCAGGAATTCTGACTGCTCC+CGG | + | chr8_2:44082106-44082125 | Msa1249420:CDS | 55.0% | |
| AACTCCGAGTCCAGCAAGTG+GGG | - | chr8_2:44082215-44082234 | None:intergenic | 55.0% | |
| CCTATAGGTTGCCCGATCCA+AGG | - | chr8_2:44082247-44082266 | None:intergenic | 55.0% | |
| CCTTGGATCGGGCAACCTAT+AGG | + | chr8_2:44082244-44082263 | Msa1249420:CDS | 55.0% | |
| CGGGCAACCTATAGGAAGAC+GGG | + | chr8_2:44082252-44082271 | Msa1249420:CDS | 55.0% | |
| TATCTGCTTTCGGCGCTGCA+GGG | + | chr8_2:44082278-44082297 | Msa1249420:CDS | 55.0% | |
| !! | GCCAGGGGTACCAATGAACT+TGG | + | chr8_2:44082360-44082379 | Msa1249420:CDS | 55.0% |
| CCCAAGTTCATTGGTACCCC+TGG | - | chr8_2:44082364-44082383 | None:intergenic | 55.0% | |
| ! | TGCATTGGCCAATCATCCCG+AGG | + | chr8_2:44080950-44080969 | Msa1249420:CDS | 55.0% |
| CCGAGGATGCTGTTGATCGA+TGG | + | chr8_2:44080967-44080986 | Msa1249420:CDS | 55.0% | |
| AAATTGCGGCTGATGTGCCC+GGG | + | chr8_2:44080994-44081013 | Msa1249420:CDS | 55.0% | |
| ! | GGGCGTGGAGAAGTATGGAA+AGG | + | chr8_2:44081682-44081701 | Msa1249420:CDS | 55.0% |
| ! | AATCCTCTAGCTCCACCTGC+CGG | + | chr8_2:44081953-44081972 | Msa1249420:CDS | 55.0% |
| AATCCTCCAATCCCACGTGC+TGG | + | chr8_2:44082019-44082038 | Msa1249420:CDS | 55.0% | |
| GAGCGAAAACTCCAGCACGT+GGG | - | chr8_2:44082033-44082052 | None:intergenic | 55.0% | |
| CCAGGAATTCTGACTGCTCC+CGG | + | chr8_2:44082106-44082125 | Msa1249420:CDS | 55.0% | |
| AACTCCGAGTCCAGCAAGTG+GGG | - | chr8_2:44082215-44082234 | None:intergenic | 55.0% | |
| CCTATAGGTTGCCCGATCCA+AGG | - | chr8_2:44082247-44082266 | None:intergenic | 55.0% | |
| CCTTGGATCGGGCAACCTAT+AGG | + | chr8_2:44082244-44082263 | Msa1249420:CDS | 55.0% | |
| CGGGCAACCTATAGGAAGAC+GGG | + | chr8_2:44082252-44082271 | Msa1249420:CDS | 55.0% | |
| TATCTGCTTTCGGCGCTGCA+GGG | + | chr8_2:44082278-44082297 | Msa1249420:CDS | 55.0% | |
| !! | GCCAGGGGTACCAATGAACT+TGG | + | chr8_2:44082360-44082379 | Msa1249420:CDS | 55.0% |
| CCCAAGTTCATTGGTACCCC+TGG | - | chr8_2:44082364-44082383 | None:intergenic | 55.0% | |
| ATTCCGGCAGGTGGAGCTAG+AGG | - | chr8_2:44081959-44081978 | None:intergenic | 60.0% | |
| GCAGCATACATTCCGGCAGG+TGG | - | chr8_2:44081968-44081987 | None:intergenic | 60.0% | |
| ACTCCAGCACGTGGGATTGG+AGG | - | chr8_2:44082025-44082044 | None:intergenic | 60.0% | |
| GGAGCGAAAACTCCAGCACG+TGG | - | chr8_2:44082034-44082053 | None:intergenic | 60.0% | |
| CCGGGAGCAGTCAGAATTCC+TGG | - | chr8_2:44082109-44082128 | None:intergenic | 60.0% | |
| TATGTTGCTGCCCCGCCTTC+TGG | + | chr8_2:44082163-44082182 | Msa1249420:CDS | 60.0% | |
| GATCATCCAGCCCCACTTGC+TGG | + | chr8_2:44082202-44082221 | Msa1249420:CDS | 60.0% | |
| GTATCTGCTTTCGGCGCTGC+AGG | + | chr8_2:44082277-44082296 | Msa1249420:CDS | 60.0% | |
| GCAGGGTTTCCTTCTGCTCC+CGG | + | chr8_2:44082295-44082314 | Msa1249420:CDS | 60.0% | |
| TCCTTCTGCTCCCGGACACA+TGG | + | chr8_2:44082303-44082322 | Msa1249420:CDS | 60.0% | |
| GCTCCCGGACACATGGCTTA+TGG | + | chr8_2:44082310-44082329 | Msa1249420:CDS | 60.0% | |
| ATTCCGGCAGGTGGAGCTAG+AGG | - | chr8_2:44081959-44081978 | None:intergenic | 60.0% | |
| GCAGCATACATTCCGGCAGG+TGG | - | chr8_2:44081968-44081987 | None:intergenic | 60.0% | |
| ACTCCAGCACGTGGGATTGG+AGG | - | chr8_2:44082025-44082044 | None:intergenic | 60.0% | |
| GGAGCGAAAACTCCAGCACG+TGG | - | chr8_2:44082034-44082053 | None:intergenic | 60.0% | |
| CCGGGAGCAGTCAGAATTCC+TGG | - | chr8_2:44082109-44082128 | None:intergenic | 60.0% | |
| TATGTTGCTGCCCCGCCTTC+TGG | + | chr8_2:44082163-44082182 | Msa1249420:CDS | 60.0% | |
| GATCATCCAGCCCCACTTGC+TGG | + | chr8_2:44082202-44082221 | Msa1249420:CDS | 60.0% | |
| GTATCTGCTTTCGGCGCTGC+AGG | + | chr8_2:44082277-44082296 | Msa1249420:CDS | 60.0% | |
| GCAGGGTTTCCTTCTGCTCC+CGG | + | chr8_2:44082295-44082314 | Msa1249420:CDS | 60.0% | |
| TCCTTCTGCTCCCGGACACA+TGG | + | chr8_2:44082303-44082322 | Msa1249420:CDS | 60.0% | |
| GCTCCCGGACACATGGCTTA+TGG | + | chr8_2:44082310-44082329 | Msa1249420:CDS | 60.0% | |
| ! | CCAGCCCCACTTGCTGGACT+CGG | + | chr8_2:44082208-44082227 | Msa1249420:CDS | 65.0% |
| GCCATGTGTCCGGGAGCAGA+AGG | - | chr8_2:44082307-44082326 | None:intergenic | 65.0% | |
| ! | CCAGCCCCACTTGCTGGACT+CGG | + | chr8_2:44082208-44082227 | Msa1249420:CDS | 65.0% |
| GCCATGTGTCCGGGAGCAGA+AGG | - | chr8_2:44082307-44082326 | None:intergenic | 65.0% | |
| CCGAGTCCAGCAAGTGGGGC+TGG | - | chr8_2:44082211-44082230 | None:intergenic | 70.0% | |
| CCGAGTCCAGCAAGTGGGGC+TGG | - | chr8_2:44082211-44082230 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 44080888 | 44082423 | 44080888 | ID=Msa1249420;Name=Msa1249420 |
| chr8_2 | mRNA | 44080888 | 44082423 | 44080888 | ID=Msa1249420-mRNA-1;Parent=Msa1249420;Name=Msa1249420-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|354 |
| chr8_2 | exon | 44080888 | 44081198 | 44080888 | ID=Msa1249420-mRNA-1:exon:13370;Parent=Msa1249420-mRNA-1 |
| chr8_2 | exon | 44081670 | 44082423 | 44081670 | ID=Msa1249420-mRNA-1:exon:13371;Parent=Msa1249420-mRNA-1 |
| chr8_2 | CDS | 44080888 | 44081198 | 44080888 | ID=Msa1249420-mRNA-1:cds;Parent=Msa1249420-mRNA-1 |
| chr8_2 | CDS | 44081670 | 44082423 | 44081670 | ID=Msa1249420-mRNA-1:cds;Parent=Msa1249420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
