Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1249950 | XP_013445993.1 | 85.781 | 429 | 32 | 4 | 1 | 410 | 1 | 419 | 0.0 | 742 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1249950 | sp|Q0WNR2|BH090_ARATH | 32.579 | 442 | 245 | 12 | 3 | 407 | 10 | 435 | 1.60e-58 | 200 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1249950 | A0A072U2K1 | 85.781 | 429 | 32 | 4 | 1 | 410 | 1 | 419 | 0.0 | 742 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1249950 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1249950 | MtrunA17_Chr8g0365711 | 85.781 | 429 | 32 | 4 | 1 | 410 | 1 | 419 | 0.0 | 742 |
| Msa1249950 | MtrunA17_Chr1g0211081 | 28.846 | 520 | 246 | 18 | 3 | 410 | 9 | 516 | 2.48e-59 | 201 |
| Msa1249950 | MtrunA17_Chr2g0298751 | 27.907 | 172 | 103 | 3 | 243 | 395 | 51 | 220 | 9.20e-15 | 73.6 |
| Msa1249950 | MtrunA17_Chr4g0048851 | 27.638 | 199 | 117 | 4 | 217 | 404 | 20 | 202 | 1.81e-12 | 66.2 |
| Msa1249950 | MtrunA17_Chr3g0131691 | 27.885 | 208 | 129 | 6 | 218 | 406 | 270 | 475 | 4.17e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1249950 | AT1G10610.1 | 32.579 | 442 | 245 | 12 | 3 | 407 | 10 | 435 | 1.63e-59 | 200 |
| Msa1249950 | AT1G10610.2 | 31.010 | 416 | 234 | 12 | 29 | 407 | 6 | 405 | 1.12e-44 | 160 |
| Msa1249950 | AT2G16910.1 | 43.421 | 152 | 72 | 5 | 3 | 147 | 8 | 152 | 1.30e-37 | 144 |
| Msa1249950 | AT2G16910.1 | 33.673 | 196 | 103 | 5 | 242 | 410 | 312 | 507 | 5.57e-20 | 92.4 |
| Msa1249950 | AT1G10610.3 | 28.045 | 353 | 207 | 10 | 87 | 407 | 1 | 338 | 7.65e-25 | 104 |
| Msa1249950 | AT5G57150.1 | 28.070 | 171 | 100 | 3 | 243 | 395 | 53 | 218 | 3.79e-17 | 80.9 |
| Msa1249950 | AT5G57150.2 | 27.976 | 168 | 98 | 3 | 243 | 392 | 54 | 216 | 5.91e-17 | 80.1 |
| Msa1249950 | AT5G57150.5 | 28.313 | 166 | 96 | 3 | 243 | 390 | 53 | 213 | 5.99e-17 | 79.7 |
| Msa1249950 | AT5G57150.4 | 28.313 | 166 | 96 | 3 | 243 | 390 | 54 | 214 | 6.95e-17 | 80.5 |
| Msa1249950 | AT5G57150.3 | 28.313 | 166 | 96 | 3 | 243 | 390 | 54 | 214 | 7.65e-17 | 79.3 |
| Msa1249950 | AT4G29930.5 | 28.387 | 155 | 97 | 4 | 243 | 392 | 53 | 198 | 7.86e-11 | 62.4 |
| Msa1249950 | AT4G29930.2 | 28.571 | 154 | 96 | 4 | 243 | 391 | 53 | 197 | 8.34e-11 | 62.0 |
| Msa1249950 | AT4G29930.6 | 26.829 | 164 | 89 | 5 | 243 | 391 | 53 | 200 | 8.44e-11 | 62.0 |
Find 73 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACAGTGTCTCTTTATTCT+AGG | 0.204070 | 8_2:+45163955 | Msa1249950:CDS |
| TATGTTGTTGTTTGGAAATA+TGG | 0.204753 | 8_2:+45163566 | Msa1249950:CDS |
| TTCATGATATTTATATCTTC+TGG | 0.214432 | 8_2:-45164542 | None:intergenic |
| ATATATACCTTGGTTATATT+CGG | 0.247363 | 8_2:-45164944 | None:intergenic |
| AACTTGTGAAGAAAATAATT+TGG | 0.257116 | 8_2:+45163857 | Msa1249950:CDS |
| ATCGGTGAGAGGTAGGTTTC+TGG | 0.265091 | 8_2:-45165321 | None:intergenic |
| CTCAACAAGACCGCCAATAA+TGG | 0.265213 | 8_2:-45164403 | None:intergenic |
| TTCTGACTGGATGATGAAAA+AGG | 0.289400 | 8_2:-45163899 | None:intergenic |
| AAAAGTTCTGAACATTCTTA+TGG | 0.297211 | 8_2:+45165657 | Msa1249950:CDS |
| GAATAAAGAGACACTGTAAA+AGG | 0.342258 | 8_2:-45163951 | None:intergenic |
| TCAACAAGACCGCCAATAAT+GGG | 0.342312 | 8_2:-45164402 | None:intergenic |
| CTTGGGATTATGTTGTTGTT+TGG | 0.348246 | 8_2:+45163558 | Msa1249950:CDS |
| TCATGATATTTATATCTTCT+GGG | 0.361224 | 8_2:-45164541 | None:intergenic |
| ATTGAAGCAATAGATTCATT+TGG | 0.361378 | 8_2:+45165595 | Msa1249950:CDS |
| ATCTTCGCCATTTCCACAAT+TGG | 0.368226 | 8_2:-45164804 | None:intergenic |
| GCAAACATGACCACATTTGA+TGG | 0.371124 | 8_2:+45165634 | Msa1249950:CDS |
| ATAATTTGGCTTCCATTTGT+AGG | 0.380168 | 8_2:+45163871 | Msa1249950:CDS |
| TTGGGATGTTGCTGTGGTGG+TGG | 0.394599 | 8_2:+45163804 | Msa1249950:CDS |
| TATATACCTTGGTTATATTC+GGG | 0.397727 | 8_2:-45164943 | None:intergenic |
| ACCTCATGGATAAGCCATCT+TGG | 0.422456 | 8_2:-45164262 | None:intergenic |
| ATCTTATCACAGAGAGGAAT+AGG | 0.426459 | 8_2:+45164876 | Msa1249950:CDS |
| TCGAGTGCCAATTGTGGAAA+TGG | 0.428882 | 8_2:+45164797 | Msa1249950:CDS |
| TGTAGGTTCATTGAGTGGTT+GGG | 0.441252 | 8_2:+45163786 | Msa1249950:intron |
| CTTTGTTGAGAGGAAAGCTT+GGG | 0.443033 | 8_2:+45163541 | Msa1249950:CDS |
| AATGATAAGTGCTCAGTTGA+AGG | 0.446352 | 8_2:-45164677 | None:intergenic |
| TCTGAACATTCTTATGGTTG+AGG | 0.459060 | 8_2:+45165663 | Msa1249950:CDS |
| TCACAAGTCTTTGTTCTGAC+TGG | 0.460884 | 8_2:-45163912 | None:intergenic |
| TAATTTGGCTTCCATTTGTA+GGG | 0.474687 | 8_2:+45163872 | Msa1249950:CDS |
| GTGTAGGTTCATTGAGTGGT+TGG | 0.488555 | 8_2:+45163785 | Msa1249950:intron |
| AGATAAAGAAAATATTGTTA+AGG | 0.491618 | 8_2:+45164823 | Msa1249950:CDS |
| TGGTTGGGATGTTGCTGTGG+TGG | 0.495834 | 8_2:+45163801 | Msa1249950:CDS |
| CCTTTGTTGAGAGGAAAGCT+TGG | 0.499952 | 8_2:+45163540 | Msa1249950:CDS |
| AGAATTTCAAGAAGAGGTCA+AGG | 0.513955 | 8_2:+45165223 | Msa1249950:CDS |
| TTTGTCCCAGGCAACTGCGC+AGG | 0.514458 | 8_2:+45166394 | Msa1249950:intron |
| TTTGTAGTGTGCTCTTCCCA+CGG | 0.515454 | 8_2:-45165262 | None:intergenic |
| AGAGAAAGAATTTCAAGAAG+AGG | 0.515681 | 8_2:+45165217 | Msa1249950:CDS |
| TGAGAAGGTGAAGTTGAAAG+AGG | 0.517970 | 8_2:+45163833 | Msa1249950:CDS |
| TTCTTAGACCCTTTGTTGAG+AGG | 0.521603 | 8_2:+45163531 | Msa1249950:CDS |
| CTCCATCCGTGTCTTTCTAG+TGG | 0.522923 | 8_2:-45165366 | None:intergenic |
| CAAGCTTTCCTCTCAACAAA+GGG | 0.525491 | 8_2:-45163539 | None:intergenic |
| GCTAAAATTGAAGTTCATGT+TGG | 0.530705 | 8_2:-45164627 | None:intergenic |
| GGTCAAGGCTTTAGAAGTTG+AGG | 0.531075 | 8_2:+45165238 | Msa1249950:CDS |
| AGACACTGTAAAAGGAAGCT+TGG | 0.535351 | 8_2:-45163943 | None:intergenic |
| CCAAGCTTTCCTCTCAACAA+AGG | 0.551769 | 8_2:-45163540 | None:intergenic |
| GCATGATACACTTTCTCTTG+AGG | 0.560146 | 8_2:-45164848 | None:intergenic |
| GATCAAGATCGGTGAGAGGT+AGG | 0.562213 | 8_2:-45165328 | None:intergenic |
| TTATCATTTGATTCAAACGA+TGG | 0.569408 | 8_2:+45164692 | Msa1249950:CDS |
| AGACGAACTTTGATCAAGAT+CGG | 0.586612 | 8_2:-45165339 | None:intergenic |
| GTGATATTGCTACCTCTGCA+TGG | 0.587930 | 8_2:-45164234 | None:intergenic |
| CAATATCACAACAACCAAGA+TGG | 0.588239 | 8_2:+45164248 | Msa1249950:CDS |
| CTTTAGAAGTTGAGGACCGT+GGG | 0.594996 | 8_2:+45165246 | Msa1249950:CDS |
| GAGTGGTTGGGATGTTGCTG+TGG | 0.602776 | 8_2:+45163798 | Msa1249950:CDS |
| AGTATTTGATGCAGAAAACA+AGG | 0.604081 | 8_2:+45166441 | Msa1249950:CDS |
| TCTTGTGTAGGTTCATTGAG+TGG | 0.606506 | 8_2:+45163781 | Msa1249950:intron |
| TGTAGTTCGAGTGCCAATTG+TGG | 0.606732 | 8_2:+45164791 | Msa1249950:CDS |
| GTAGAAGTGAATCATATCGC+CGG | 0.619401 | 8_2:+45165514 | Msa1249950:CDS |
| GGTTGATTCAAATATTCAAG+CGG | 0.621147 | 8_2:-45164725 | None:intergenic |
| GCTTTAGAAGTTGAGGACCG+TGG | 0.622520 | 8_2:+45165245 | Msa1249950:CDS |
| AATATGGAAATGATCCAACT+AGG | 0.624297 | 8_2:+45163582 | Msa1249950:CDS |
| CAACAAGACCGCCAATAATG+GGG | 0.630577 | 8_2:-45164401 | None:intergenic |
| AAAGACAAAGAACTTGCAGA+AGG | 0.635182 | 8_2:+45165296 | Msa1249950:CDS |
| GATCTACAGTGTCCATGCAG+AGG | 0.648208 | 8_2:+45164222 | Msa1249950:intron |
| AGGAGAAACAGAATAAAACA+AGG | 0.649066 | 8_2:+45164896 | Msa1249950:CDS |
| TTCCACTAGAAAGACACGGA+TGG | 0.652546 | 8_2:+45165364 | Msa1249950:CDS |
| ACCAAGATGGCTTATCCATG+AGG | 0.659718 | 8_2:+45164261 | Msa1249950:CDS |
| CTGATTCCACTAGAAAGACA+CGG | 0.659773 | 8_2:+45165360 | Msa1249950:CDS |
| CACTAGAAAGACACGGATGG+AGG | 0.661720 | 8_2:+45165367 | Msa1249950:CDS |
| GGAGAAACAGAATAAAACAA+GGG | 0.669280 | 8_2:+45164897 | Msa1249950:CDS |
| CTTTGATCAAGATCGGTGAG+AGG | 0.680787 | 8_2:-45165332 | None:intergenic |
| TGGTGGTGGAAATATTGAGA+AGG | 0.686408 | 8_2:+45163818 | Msa1249950:CDS |
| TCTAGTCCCGAATATAACCA+AGG | 0.688391 | 8_2:+45164937 | Msa1249950:CDS |
| TTGTGCTGTGAGCAGAAGCA+AGG | 0.689984 | 8_2:+45165556 | Msa1249950:CDS |
| AGTCAGAACAAAGACTTGTG+AGG | 0.691527 | 8_2:+45163914 | Msa1249950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGATTAAACATAAATAAA+TGG | - | chr8_2:45164175-45164194 | None:intergenic | 10.0% |
| !! | TTACAAATGAATAACAAAAT+GGG | - | chr8_2:45163617-45163636 | None:intergenic | 15.0% |
| !! | TTTACAAATGAATAACAAAA+TGG | - | chr8_2:45163618-45163637 | None:intergenic | 15.0% |
| !! | AGATAAAGAAAATATTGTTA+AGG | + | chr8_2:45164823-45164842 | Msa1249950:CDS | 15.0% |
| !! | TAAACAATTTATATATACCT+TGG | - | chr8_2:45164957-45164976 | None:intergenic | 15.0% |
| !!! | AATTTTATTGTTTCTTTTCT+TGG | + | chr8_2:45165453-45165472 | Msa1249950:intron | 15.0% |
| !!! | TCATTTTCTCAAGTTATTAT+TGG | + | chr8_2:45163683-45163702 | Msa1249950:intron | 20.0% |
| !! | AACTTGTGAAGAAAATAATT+TGG | + | chr8_2:45163857-45163876 | Msa1249950:CDS | 20.0% |
| !! | TTCAATATAATTATGTGTGT+CGG | - | chr8_2:45164074-45164093 | None:intergenic | 20.0% |
| !! | TGTTTAATCATTGAAATGAA+AGG | + | chr8_2:45164183-45164202 | Msa1249950:intron | 20.0% |
| !! | ACAAAAATTAATTTACCTCA+TGG | - | chr8_2:45164279-45164298 | None:intergenic | 20.0% |
| !! | AAATCTTAGCACTTATTTAT+TGG | + | chr8_2:45164453-45164472 | Msa1249950:intron | 20.0% |
| !! | TCATGATATTTATATCTTCT+GGG | - | chr8_2:45164544-45164563 | None:intergenic | 20.0% |
| !! | TTCATGATATTTATATCTTC+TGG | - | chr8_2:45164545-45164564 | None:intergenic | 20.0% |
| !! | ATATATACCTTGGTTATATT+CGG | - | chr8_2:45164947-45164966 | None:intergenic | 20.0% |
| !!! | ATTGTTTTTTTACTATGTCA+TGG | + | chr8_2:45165418-45165437 | Msa1249950:intron | 20.0% |
| !! | TCTAATTTAAATACTCAATC+TGG | - | chr8_2:45165789-45165808 | None:intergenic | 20.0% |
| !! | ATTGAGTATTTAAATTAGAC+AGG | + | chr8_2:45165790-45165809 | Msa1249950:intron | 20.0% |
| !! | AAATTCAATTAAGGTAATGA+GGG | - | chr8_2:45166047-45166066 | None:intergenic | 20.0% |
| !! | AAAATTCAATTAAGGTAATG+AGG | - | chr8_2:45166048-45166067 | None:intergenic | 20.0% |
| !!! | TATATTCGATTTGAAGTATT+CGG | - | chr8_2:45166141-45166160 | None:intergenic | 20.0% |
| !!! | TAGTTTTTCAAAATTGTCTA+CGG | - | chr8_2:45166237-45166256 | None:intergenic | 20.0% |
| !!! | TATGTTGTTGTTTGGAAATA+TGG | + | chr8_2:45163566-45163585 | Msa1249950:CDS | 25.0% |
| ! | TATGAAGCATATATACTCAT+CGG | + | chr8_2:45163642-45163661 | Msa1249950:intron | 25.0% |
| ! | TCAAGTTATTATTGGTATTG+AGG | + | chr8_2:45163691-45163710 | Msa1249950:intron | 25.0% |
| ! | AATGAAGCATAAATACTCTT+CGG | + | chr8_2:45164004-45164023 | Msa1249950:intron | 25.0% |
| !! | GAGGTAAATTAATTTTTGTG+TGG | + | chr8_2:45164280-45164299 | Msa1249950:intron | 25.0% |
| !!! | TTAACTGTTAATGTTTTGAC+AGG | + | chr8_2:45164353-45164372 | Msa1249950:intron | 25.0% |
| ! | TTATCATTTGATTCAAACGA+TGG | + | chr8_2:45164692-45164711 | Msa1249950:CDS | 25.0% |
| !! | CTGAAATTTTATTGCGTTTT+TGG | - | chr8_2:45164760-45164779 | None:intergenic | 25.0% |
| ! | TATATACCTTGGTTATATTC+GGG | - | chr8_2:45164946-45164965 | None:intergenic | 25.0% |
| !! | TATAACTTTTACCGAAATCA+TGG | - | chr8_2:45165054-45165073 | None:intergenic | 25.0% |
| !! | CTTAATCATGAAATCTTTTC+CGG | - | chr8_2:45165536-45165555 | None:intergenic | 25.0% |
| ! | ATTGAAGCAATAGATTCATT+TGG | + | chr8_2:45165595-45165614 | Msa1249950:CDS | 25.0% |
| !!! | AAAAGTTCTGAACATTCTTA+TGG | + | chr8_2:45165657-45165676 | Msa1249950:CDS | 25.0% |
| !!! | TAAAAAGTATGATTTGGTGT+GGG | - | chr8_2:45165762-45165781 | None:intergenic | 25.0% |
| !! | GGAATGTAAAAAGTATGATT+TGG | - | chr8_2:45165768-45165787 | None:intergenic | 25.0% |
| ! | GGTAAAAATTATCTGTTGTA+AGG | - | chr8_2:45166026-45166045 | None:intergenic | 25.0% |
| ! | AATGAGATTATTGTAGATAG+TGG | - | chr8_2:45166172-45166191 | None:intergenic | 25.0% |
| ! | AAAACTAGAGATTTCATTCA+TGG | + | chr8_2:45166250-45166269 | Msa1249950:intron | 25.0% |
| ! | TATCTCCATATTTAAAGACT+AGG | + | chr8_2:45166284-45166303 | Msa1249950:intron | 25.0% |
| !! | ATCAACCTAGTCTTTAAATA+TGG | - | chr8_2:45166292-45166311 | None:intergenic | 25.0% |
| ! | GATAGAGAATCAATGAAATA+GGG | - | chr8_2:45166326-45166345 | None:intergenic | 25.0% |
| !! | AAATACTCTCTGATTTTCTT+CGG | - | chr8_2:45166428-45166447 | None:intergenic | 25.0% |
| AATATGGAAATGATCCAACT+AGG | + | chr8_2:45163582-45163601 | Msa1249950:CDS | 30.0% | |
| ATCCAATATTTCTCTTGTGT+AGG | + | chr8_2:45163769-45163788 | Msa1249950:intron | 30.0% | |
| AACCTACACAAGAGAAATAT+TGG | - | chr8_2:45163774-45163793 | None:intergenic | 30.0% | |
| ! | ATAATTTGGCTTCCATTTGT+AGG | + | chr8_2:45163871-45163890 | Msa1249950:CDS | 30.0% |
| ! | TAATTTGGCTTCCATTTGTA+GGG | + | chr8_2:45163872-45163891 | Msa1249950:CDS | 30.0% |
| GAATAAAGAGACACTGTAAA+AGG | - | chr8_2:45163954-45163973 | None:intergenic | 30.0% | |
| TTACAGTGTCTCTTTATTCT+AGG | + | chr8_2:45163955-45163974 | Msa1249950:CDS | 30.0% | |
| AATATAATTATGTGTGTCGG+TGG | - | chr8_2:45164071-45164090 | None:intergenic | 30.0% | |
| !! | CAAGTTTTAATCCCCATTAT+TGG | + | chr8_2:45164390-45164409 | Msa1249950:CDS | 30.0% |
| GCTAAAATTGAAGTTCATGT+TGG | - | chr8_2:45164630-45164649 | None:intergenic | 30.0% | |
| !! | CATGAACTTCAATTTTAGCA+TGG | + | chr8_2:45164631-45164650 | Msa1249950:CDS | 30.0% |
| !! | AACTTCAATTTTAGCATGGA+AGG | + | chr8_2:45164635-45164654 | Msa1249950:CDS | 30.0% |
| ! | GGTTGATTCAAATATTCAAG+CGG | - | chr8_2:45164728-45164747 | None:intergenic | 30.0% |
| CTAAAAATCTTATCACAGAG+AGG | + | chr8_2:45164870-45164889 | Msa1249950:CDS | 30.0% | |
| AGGAGAAACAGAATAAAACA+AGG | + | chr8_2:45164896-45164915 | Msa1249950:CDS | 30.0% | |
| GGAGAAACAGAATAAAACAA+GGG | + | chr8_2:45164897-45164916 | Msa1249950:CDS | 30.0% | |
| TGAGTTTGCCATAATTACAT+TGG | + | chr8_2:45165024-45165043 | Msa1249950:intron | 30.0% | |
| ! | GTAATTTTGTTGAAGCTTCA+CGG | - | chr8_2:45165077-45165096 | None:intergenic | 30.0% |
| GTGAAGCTTCAACAAAATTA+CGG | + | chr8_2:45165076-45165095 | Msa1249950:intron | 30.0% | |
| GGATGCGATTGAATATATAA+TGG | + | chr8_2:45165181-45165200 | Msa1249950:intron | 30.0% | |
| AGAGAAAGAATTTCAAGAAG+AGG | + | chr8_2:45165217-45165236 | Msa1249950:CDS | 30.0% | |
| GATAATAGCAAACTAACTCA+TGG | - | chr8_2:45165726-45165745 | None:intergenic | 30.0% | |
| !! | GAGTTAGTTTGCTATTATCT+TGG | + | chr8_2:45165727-45165746 | Msa1249950:intron | 30.0% |
| !! | GTAAAAAGTATGATTTGGTG+TGG | - | chr8_2:45165763-45165782 | None:intergenic | 30.0% |
| AACATAGCCTAATCATTCTT+TGG | - | chr8_2:45165837-45165856 | None:intergenic | 30.0% | |
| AAGAATGATTAGGCTATGTT+TGG | + | chr8_2:45165837-45165856 | Msa1249950:intron | 30.0% | |
| ! | TGATCAAAATAGAGCTGTTT+TGG | + | chr8_2:45165911-45165930 | Msa1249950:intron | 30.0% |
| AGCTTAAATACTACTTGAAG+TGG | - | chr8_2:45165999-45166018 | None:intergenic | 30.0% | |
| GGATAGAGAATCAATGAAAT+AGG | - | chr8_2:45166327-45166346 | None:intergenic | 30.0% | |
| AATCTTATGAACTTACGGAT+GGG | - | chr8_2:45166348-45166367 | None:intergenic | 30.0% | |
| AAGGGAATCTTATGAACTTA+CGG | - | chr8_2:45166353-45166372 | None:intergenic | 30.0% | |
| TAACCTCGTTACAATAGAAA+GGG | - | chr8_2:45166371-45166390 | None:intergenic | 30.0% | |
| TTAACCTCGTTACAATAGAA+AGG | - | chr8_2:45166372-45166391 | None:intergenic | 30.0% | |
| ! | AATACTCTCTGATTTTCTTC+GGG | - | chr8_2:45166427-45166446 | None:intergenic | 30.0% |
| AGTATTTGATGCAGAAAACA+AGG | + | chr8_2:45166441-45166460 | Msa1249950:CDS | 30.0% | |
| ! | CTTGGGATTATGTTGTTGTT+TGG | + | chr8_2:45163558-45163577 | Msa1249950:CDS | 35.0% |
| !!! | ATGGGTTTTTAGTACCTAGT+TGG | - | chr8_2:45163599-45163618 | None:intergenic | 35.0% |
| !! | AAAAAGGGTATCCCTACAAA+TGG | - | chr8_2:45163886-45163905 | None:intergenic | 35.0% |
| TCTGACTGGATGATGAAAAA+GGG | - | chr8_2:45163901-45163920 | None:intergenic | 35.0% | |
| TTCTGACTGGATGATGAAAA+AGG | - | chr8_2:45163902-45163921 | None:intergenic | 35.0% | |
| GCATAAATACTCTTCGGATT+AGG | + | chr8_2:45164010-45164029 | Msa1249950:intron | 35.0% | |
| ATGAAGTATAGACTCAGACA+CGG | - | chr8_2:45164136-45164155 | None:intergenic | 35.0% | |
| CTGAGTCTATACTTCATGAA+TGG | + | chr8_2:45164139-45164158 | Msa1249950:intron | 35.0% | |
| CAATATCACAACAACCAAGA+TGG | + | chr8_2:45164248-45164267 | Msa1249950:CDS | 35.0% | |
| !! | GTTTTAATCCCCATTATTGG+CGG | + | chr8_2:45164393-45164412 | Msa1249950:CDS | 35.0% |
| AATGATAAGTGCTCAGTTGA+AGG | - | chr8_2:45164680-45164699 | None:intergenic | 35.0% | |
| !!! | TTGCGTTTTTGGCTTTTAAG+TGG | - | chr8_2:45164749-45164768 | None:intergenic | 35.0% |
| ATCTTATCACAGAGAGGAAT+AGG | + | chr8_2:45164876-45164895 | Msa1249950:CDS | 35.0% | |
| ! | AACAAGGGCTTTTTACTCTA+AGG | + | chr8_2:45164912-45164931 | Msa1249950:CDS | 35.0% |
| ATGGTGGTCCAATGTAATTA+TGG | - | chr8_2:45165035-45165054 | None:intergenic | 35.0% | |
| ! | AACTTTTACCGAAATCATGG+TGG | - | chr8_2:45165051-45165070 | None:intergenic | 35.0% |
| TATTGATCTGAACATGCACT+AGG | + | chr8_2:45165125-45165144 | Msa1249950:intron | 35.0% | |
| AGAATTTCAAGAAGAGGTCA+AGG | + | chr8_2:45165223-45165242 | Msa1249950:CDS | 35.0% | |
| AAAGACAAAGAACTTGCAGA+AGG | + | chr8_2:45165296-45165315 | Msa1249950:CDS | 35.0% | |
| AGACGAACTTTGATCAAGAT+CGG | - | chr8_2:45165342-45165361 | None:intergenic | 35.0% | |
| ! | CAGAACTTTTCCATCAAATG+TGG | - | chr8_2:45165647-45165666 | None:intergenic | 35.0% |
| TCTGAACATTCTTATGGTTG+AGG | + | chr8_2:45165663-45165682 | Msa1249950:CDS | 35.0% | |
| ACATTCTTATGGTTGAGGTA+AGG | + | chr8_2:45165668-45165687 | Msa1249950:intron | 35.0% | |
| CATTCTTATGGTTGAGGTAA+GGG | + | chr8_2:45165669-45165688 | Msa1249950:intron | 35.0% | |
| ! | AACTAACTCATGGATTTTCG+TGG | - | chr8_2:45165716-45165735 | None:intergenic | 35.0% |
| CTTCCTTCCAAAGAATGATT+AGG | + | chr8_2:45165827-45165846 | Msa1249950:intron | 35.0% | |
| TAGCCTAATCATTCTTTGGA+AGG | - | chr8_2:45165833-45165852 | None:intergenic | 35.0% | |
| ! | AGCTATTTGTTACAAGCTAG+CGG | - | chr8_2:45165872-45165891 | None:intergenic | 35.0% |
| GAATCTTATGAACTTACGGA+TGG | - | chr8_2:45166349-45166368 | None:intergenic | 35.0% | |
| ATTCCCTTTCTATTGTAACG+AGG | + | chr8_2:45166365-45166384 | Msa1249950:intron | 35.0% | |
| TTCTTAGACCCTTTGTTGAG+AGG | + | chr8_2:45163531-45163550 | Msa1249950:CDS | 40.0% | |
| CAAGCTTTCCTCTCAACAAA+GGG | - | chr8_2:45163542-45163561 | None:intergenic | 40.0% | |
| CTTTGTTGAGAGGAAAGCTT+GGG | + | chr8_2:45163541-45163560 | Msa1249950:CDS | 40.0% | |
| ! | TCATCGGATTAGACATGTTC+TGG | + | chr8_2:45163658-45163677 | Msa1249950:intron | 40.0% |
| TCTTGTGTAGGTTCATTGAG+TGG | + | chr8_2:45163781-45163800 | Msa1249950:intron | 40.0% | |
| TGTAGGTTCATTGAGTGGTT+GGG | + | chr8_2:45163786-45163805 | Msa1249950:intron | 40.0% | |
| !! | TGGTGGTGGAAATATTGAGA+AGG | + | chr8_2:45163818-45163837 | Msa1249950:CDS | 40.0% |
| TGAGAAGGTGAAGTTGAAAG+AGG | + | chr8_2:45163833-45163852 | Msa1249950:CDS | 40.0% | |
| TCACAAGTCTTTGTTCTGAC+TGG | - | chr8_2:45163915-45163934 | None:intergenic | 40.0% | |
| AGTCAGAACAAAGACTTGTG+AGG | + | chr8_2:45163914-45163933 | Msa1249950:CDS | 40.0% | |
| AGACACTGTAAAAGGAAGCT+TGG | - | chr8_2:45163946-45163965 | None:intergenic | 40.0% | |
| !!! | ATGTTTTGACAGGACTCAGT+TGG | + | chr8_2:45164363-45164382 | Msa1249950:intron | 40.0% |
| TCAACAAGACCGCCAATAAT+GGG | - | chr8_2:45164405-45164424 | None:intergenic | 40.0% | |
| ATCTTCGCCATTTCCACAAT+TGG | - | chr8_2:45164807-45164826 | None:intergenic | 40.0% | |
| GCATGATACACTTTCTCTTG+AGG | - | chr8_2:45164851-45164870 | None:intergenic | 40.0% | |
| TCTAGTCCCGAATATAACCA+AGG | + | chr8_2:45164937-45164956 | Msa1249950:CDS | 40.0% | |
| ACATTGGACCACCATGATTT+CGG | + | chr8_2:45165040-45165059 | Msa1249950:intron | 40.0% | |
| AAGAATTGCTACTCTGTGAG+AGG | - | chr8_2:45165159-45165178 | None:intergenic | 40.0% | |
| TCACAGAGTAGCAATTCTTG+AGG | + | chr8_2:45165160-45165179 | Msa1249950:intron | 40.0% | |
| CTGATTCCACTAGAAAGACA+CGG | + | chr8_2:45165360-45165379 | Msa1249950:CDS | 40.0% | |
| GTAGAAGTGAATCATATCGC+CGG | + | chr8_2:45165514-45165533 | Msa1249950:CDS | 40.0% | |
| ! | AGAAGCAAGGTGTGTTTTCA+AGG | + | chr8_2:45165569-45165588 | Msa1249950:CDS | 40.0% |
| GCAAACATGACCACATTTGA+TGG | + | chr8_2:45165634-45165653 | Msa1249950:CDS | 40.0% | |
| ! | CTTTGGAAGGAAGTTACAAG+TGG | - | chr8_2:45165820-45165839 | None:intergenic | 40.0% |
| ! | GCTATTTGTTACAAGCTAGC+GGG | - | chr8_2:45165871-45165890 | None:intergenic | 40.0% |
| AAATTGTCTACGGCTCTGTT+TGG | - | chr8_2:45166227-45166246 | None:intergenic | 40.0% | |
| ! | ACGAGGTTAAATTTTGTCCC+AGG | + | chr8_2:45166382-45166401 | Msa1249950:intron | 40.0% |
| CCAAGCTTTCCTCTCAACAA+AGG | - | chr8_2:45163543-45163562 | None:intergenic | 45.0% | |
| CCTTTGTTGAGAGGAAAGCT+TGG | + | chr8_2:45163540-45163559 | Msa1249950:CDS | 45.0% | |
| ACTCAGACACGACACAGATA+TGG | - | chr8_2:45163720-45163739 | None:intergenic | 45.0% | |
| GTGTAGGTTCATTGAGTGGT+TGG | + | chr8_2:45163785-45163804 | Msa1249950:intron | 45.0% | |
| GATTAGGCGTGCAACAATGT+CGG | + | chr8_2:45164026-45164045 | Msa1249950:intron | 45.0% | |
| ! | ATTATGTGTGTCGGTGGTGT+CGG | - | chr8_2:45164065-45164084 | None:intergenic | 45.0% |
| GTGATATTGCTACCTCTGCA+TGG | - | chr8_2:45164237-45164256 | None:intergenic | 45.0% | |
| ACCAAGATGGCTTATCCATG+AGG | + | chr8_2:45164261-45164280 | Msa1249950:CDS | 45.0% | |
| ACCTCATGGATAAGCCATCT+TGG | - | chr8_2:45164265-45164284 | None:intergenic | 45.0% | |
| CAACAAGACCGCCAATAATG+GGG | - | chr8_2:45164404-45164423 | None:intergenic | 45.0% | |
| CTCAACAAGACCGCCAATAA+TGG | - | chr8_2:45164406-45164425 | None:intergenic | 45.0% | |
| TGTAGTTCGAGTGCCAATTG+TGG | + | chr8_2:45164791-45164810 | Msa1249950:CDS | 45.0% | |
| TCGAGTGCCAATTGTGGAAA+TGG | + | chr8_2:45164797-45164816 | Msa1249950:CDS | 45.0% | |
| !! | GGTCAAGGCTTTAGAAGTTG+AGG | + | chr8_2:45165238-45165257 | Msa1249950:CDS | 45.0% |
| ! | CTTTAGAAGTTGAGGACCGT+GGG | + | chr8_2:45165246-45165265 | Msa1249950:CDS | 45.0% |
| TTTGTAGTGTGCTCTTCCCA+CGG | - | chr8_2:45165265-45165284 | None:intergenic | 45.0% | |
| CTTTGATCAAGATCGGTGAG+AGG | - | chr8_2:45165335-45165354 | None:intergenic | 45.0% | |
| TTCCACTAGAAAGACACGGA+TGG | + | chr8_2:45165364-45165383 | Msa1249950:CDS | 45.0% | |
| !! | AAATATTAAAAGATTATATT+AGG | - | chr8_2:45165482-45165501 | None:intergenic | 5.0% |
| !! | TAATTAATAAAATTCAATTA+AGG | - | chr8_2:45166056-45166075 | None:intergenic | 5.0% |
| TGTCTGAGTTCGTGCTTGAC+AGG | + | chr8_2:45163731-45163750 | Msa1249950:intron | 50.0% | |
| GATCTACAGTGTCCATGCAG+AGG | + | chr8_2:45164222-45164241 | Msa1249950:intron | 50.0% | |
| !! | GCTTTAGAAGTTGAGGACCG+TGG | + | chr8_2:45165245-45165264 | Msa1249950:CDS | 50.0% |
| ATCGGTGAGAGGTAGGTTTC+TGG | - | chr8_2:45165324-45165343 | None:intergenic | 50.0% | |
| GATCAAGATCGGTGAGAGGT+AGG | - | chr8_2:45165331-45165350 | None:intergenic | 50.0% | |
| CTCCATCCGTGTCTTTCTAG+TGG | - | chr8_2:45165369-45165388 | None:intergenic | 50.0% | |
| CACTAGAAAGACACGGATGG+AGG | + | chr8_2:45165367-45165386 | Msa1249950:CDS | 50.0% | |
| TTGTGCTGTGAGCAGAAGCA+AGG | + | chr8_2:45165556-45165575 | Msa1249950:CDS | 50.0% | |
| AATATCCTGCGCAGTTGCCT+GGG | - | chr8_2:45166402-45166421 | None:intergenic | 50.0% | |
| GAGTGGTTGGGATGTTGCTG+TGG | + | chr8_2:45163798-45163817 | Msa1249950:CDS | 55.0% | |
| TGGTTGGGATGTTGCTGTGG+TGG | + | chr8_2:45163801-45163820 | Msa1249950:CDS | 55.0% | |
| TTGGGATGTTGCTGTGGTGG+TGG | + | chr8_2:45163804-45163823 | Msa1249950:CDS | 55.0% | |
| GAATATCCTGCGCAGTTGCC+TGG | - | chr8_2:45166403-45166422 | None:intergenic | 55.0% | |
| TTTGTCCCAGGCAACTGCGC+AGG | + | chr8_2:45166394-45166413 | Msa1249950:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 45163515 | 45166466 | 45163515 | ID=Msa1249950;Name=Msa1249950 |
| chr8_2 | mRNA | 45163515 | 45166466 | 45163515 | ID=Msa1249950-mRNA-1;Parent=Msa1249950;Name=Msa1249950-mRNA-1;_AED=0.05;_eAED=0.08;_QI=0|0|0|0.87|1|1|8|0|410 |
| chr8_2 | exon | 45163515 | 45163603 | 45163515 | ID=Msa1249950-mRNA-1:exon:13650;Parent=Msa1249950-mRNA-1 |
| chr8_2 | exon | 45163791 | 45163976 | 45163791 | ID=Msa1249950-mRNA-1:exon:13651;Parent=Msa1249950-mRNA-1 |
| chr8_2 | exon | 45164231 | 45164282 | 45164231 | ID=Msa1249950-mRNA-1:exon:13652;Parent=Msa1249950-mRNA-1 |
| chr8_2 | exon | 45164375 | 45164443 | 45164375 | ID=Msa1249950-mRNA-1:exon:13653;Parent=Msa1249950-mRNA-1 |
| chr8_2 | exon | 45164539 | 45164958 | 45164539 | ID=Msa1249950-mRNA-1:exon:13654;Parent=Msa1249950-mRNA-1 |
| chr8_2 | exon | 45165212 | 45165388 | 45165212 | ID=Msa1249950-mRNA-1:exon:13655;Parent=Msa1249950-mRNA-1 |
| chr8_2 | exon | 45165508 | 45165684 | 45165508 | ID=Msa1249950-mRNA-1:exon:13656;Parent=Msa1249950-mRNA-1 |
| chr8_2 | exon | 45166404 | 45166466 | 45166404 | ID=Msa1249950-mRNA-1:exon:13657;Parent=Msa1249950-mRNA-1 |
| chr8_2 | CDS | 45163515 | 45163603 | 45163515 | ID=Msa1249950-mRNA-1:cds;Parent=Msa1249950-mRNA-1 |
| chr8_2 | CDS | 45163791 | 45163976 | 45163791 | ID=Msa1249950-mRNA-1:cds;Parent=Msa1249950-mRNA-1 |
| chr8_2 | CDS | 45164231 | 45164282 | 45164231 | ID=Msa1249950-mRNA-1:cds;Parent=Msa1249950-mRNA-1 |
| chr8_2 | CDS | 45164375 | 45164443 | 45164375 | ID=Msa1249950-mRNA-1:cds;Parent=Msa1249950-mRNA-1 |
| chr8_2 | CDS | 45164539 | 45164958 | 45164539 | ID=Msa1249950-mRNA-1:cds;Parent=Msa1249950-mRNA-1 |
| chr8_2 | CDS | 45165212 | 45165388 | 45165212 | ID=Msa1249950-mRNA-1:cds;Parent=Msa1249950-mRNA-1 |
| chr8_2 | CDS | 45165508 | 45165684 | 45165508 | ID=Msa1249950-mRNA-1:cds;Parent=Msa1249950-mRNA-1 |
| chr8_2 | CDS | 45166404 | 45166466 | 45166404 | ID=Msa1249950-mRNA-1:cds;Parent=Msa1249950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
