AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1251520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1251520 MtrunA17_Chr8g0366921 88.344 326 32 1 1 326 1 320 4.57e-144 414
Msa1251520 MtrunA17_Chr6g0470151 43.421 380 174 7 1 367 1 352 2.01e-59 199
Msa1251520 MtrunA17_Chr2g0289181 60.769 130 51 0 332 461 1 130 7.22e-50 169
Msa1251520 MtrunA17_Chr8g0368721 50.153 327 147 4 1 326 1 312 7.17e-48 167
Msa1251520 MtrunA17_Chr7g0266621 41.493 335 154 7 1 327 1 301 5.32e-36 135
Msa1251520 MtrunA17_Chr2g0293901 50.711 211 87 4 1 211 1 194 1.26e-27 109
Msa1251520 MtrunA17_Chr1g0202461 48.958 96 48 1 325 420 241 335 4.07e-26 109
Msa1251520 MtrunA17_Chr8g0348311 48.958 96 48 1 323 418 133 227 1.64e-23 101
Msa1251520 MtrunA17_Chr7g0248691 47.917 96 49 1 323 418 132 226 1.12e-22 98.6
Msa1251520 MtrunA17_Chr8g0387501 59.722 72 28 1 346 417 130 200 1.75e-21 94.0
Msa1251520 MtrunA17_Chr7g0270051 43.925 107 55 1 304 405 7 113 3.83e-19 87.0
Msa1251520 MtrunA17_Chr4g0053281 45.263 95 51 1 319 413 241 334 2.97e-18 85.9
Msa1251520 MtrunA17_Chr5g0401821 54.167 72 32 1 331 402 186 256 7.97e-18 83.6
Msa1251520 MtrunA17_Chr4g0071521 49.398 83 41 1 320 402 221 302 9.86e-18 84.0
Msa1251520 MtrunA17_Chr1g0184691 59.091 66 23 1 346 407 294 359 1.95e-17 83.6
Msa1251520 MtrunA17_Chr2g0293481 50.000 76 37 1 346 421 268 342 2.24e-17 84.3
Msa1251520 MtrunA17_Chr2g0319961 58.333 60 25 0 346 405 81 140 4.55e-17 80.9
Msa1251520 MtrunA17_Chr7g0249311 47.191 89 45 2 335 423 169 255 8.73e-17 83.2
Msa1251520 MtrunA17_Chr7g0249311 47.297 74 38 1 343 416 390 462 1.30e-13 73.2
Msa1251520 MtrunA17_Chr2g0284321 56.667 60 26 0 346 405 36 95 1.08e-16 79.0
Msa1251520 MtrunA17_Chr8g0379461 52.381 63 30 0 346 408 77 139 1.22e-16 79.3
Msa1251520 MtrunA17_Chr1g0147881 44.898 98 45 3 325 414 238 334 3.14e-16 79.7
Msa1251520 MtrunA17_Chr7g0263531 41.964 112 63 2 330 441 174 283 3.48e-16 80.5
Msa1251520 MtrunA17_Chr7g0263531 38.384 99 44 3 325 408 327 423 7.85e-14 73.2
Msa1251520 MtrunA17_Chr3g0139021 48.780 82 37 2 325 402 291 371 6.61e-16 79.3
Msa1251520 MtrunA17_Chr7g0249301 43.820 89 48 2 335 423 52 138 1.37e-15 78.2
Msa1251520 MtrunA17_Chr7g0249301 48.438 64 32 1 343 406 290 352 2.08e-12 68.6
Msa1251520 MtrunA17_Chr7g0218081 52.941 68 30 2 341 408 224 289 1.99e-15 78.6
Msa1251520 MtrunA17_Chr7g0218081 53.226 62 28 1 345 406 410 470 2.34e-14 75.1
Msa1251520 MtrunA17_Chr7g0228941 45.070 71 39 0 343 413 50 120 2.45e-15 72.4
Msa1251520 MtrunA17_Chr7g0243891 52.778 72 32 2 337 408 208 277 5.25e-15 77.4
Msa1251520 MtrunA17_Chr7g0243891 46.875 64 33 1 343 406 372 434 9.59e-11 63.9
Msa1251520 MtrunA17_Chr3g0079691 44.118 102 53 4 314 415 251 348 1.30e-14 76.3
Msa1251520 MtrunA17_Chr3g0079691 48.438 64 32 1 343 406 493 555 1.48e-12 70.1
Msa1251520 MtrunA17_Chr4g0042831 39.583 96 52 2 345 440 278 367 1.53e-14 75.1
Msa1251520 MtrunA17_Chr4g0042831 44.286 70 38 1 336 405 136 204 1.99e-12 68.6
Msa1251520 MtrunA17_Chr3g0101131 52.941 68 30 2 338 405 236 301 3.05e-14 75.1
Msa1251520 MtrunA17_Chr3g0101131 44.928 69 37 1 343 411 413 480 3.35e-12 68.6
Msa1251520 MtrunA17_Chr7g0266611 56.923 65 28 0 400 464 2 66 3.66e-14 70.5
Msa1251520 MtrunA17_Chr5g0447701 49.275 69 31 3 341 408 88 153 4.06e-14 73.9
Msa1251520 MtrunA17_Chr5g0447701 49.206 63 31 1 343 405 250 311 8.43e-11 63.5
Msa1251520 MtrunA17_Chr5g0443131 51.613 62 29 1 345 406 157 217 6.21e-14 72.4
Msa1251520 MtrunA17_Chr5g0418191 49.254 67 33 1 345 411 320 385 2.14e-13 72.0
Msa1251520 MtrunA17_Chr5g0418191 48.684 76 37 2 336 411 142 215 1.12e-12 69.7
Msa1251520 MtrunA17_Chr4g0074001 49.206 63 31 1 343 405 357 418 3.76e-13 71.6
Msa1251520 MtrunA17_Chr3g0106491 47.436 78 34 3 331 408 189 259 3.96e-13 71.2
Msa1251520 MtrunA17_Chr3g0106491 46.875 64 33 1 343 406 363 425 6.89e-11 64.3
Msa1251520 MtrunA17_Chr3g0129321 42.647 68 38 1 342 409 115 181 5.97e-13 67.8
Msa1251520 MtrunA17_Chr7g0238921 46.053 76 40 1 327 402 106 180 6.85e-13 69.3
Msa1251520 MtrunA17_Chr1g0194481 37.778 90 54 2 325 414 139 226 8.71e-13 69.3
Msa1251520 MtrunA17_Chr5g0432161 51.562 64 29 2 342 405 241 302 1.04e-12 70.1
Msa1251520 MtrunA17_Chr5g0432161 50.000 64 31 1 343 406 419 481 3.07e-12 68.6
Msa1251520 MtrunA17_Chr4g0051881 43.056 72 39 2 331 402 165 234 1.13e-12 68.9
Msa1251520 MtrunA17_Chr5g0445311 46.875 64 33 1 343 406 362 424 1.87e-12 69.3
Msa1251520 MtrunA17_Chr5g0445311 53.226 62 27 2 344 405 199 258 2.49e-12 68.9
Msa1251520 MtrunA17_Chr4g0068541 41.333 75 42 2 331 405 195 267 2.15e-12 68.6
Msa1251520 MtrunA17_Chr4g0004911 41.558 77 44 1 329 405 168 243 6.63e-12 67.4
Msa1251520 MtrunA17_Chr4g0004911 47.619 63 32 1 343 405 334 395 9.61e-12 67.0
Msa1251520 MtrunA17_Chr7g0270191 38.202 89 53 2 325 413 126 212 6.83e-12 66.2
Msa1251520 MtrunA17_Chr8g0335811 50.000 62 26 3 343 402 152 210 7.79e-12 65.1
Msa1251520 MtrunA17_Chr2g0302391 45.000 60 33 0 346 405 212 271 1.04e-11 66.6
Msa1251520 MtrunA17_Chr3g0136961 46.552 58 31 0 345 402 138 195 1.62e-11 65.1
Msa1251520 MtrunA17_Chr5g0418781 39.080 87 51 2 316 402 96 180 1.69e-11 64.7
Msa1251520 MtrunA17_Chr4g0001361 35.849 106 60 2 343 448 160 257 2.09e-11 65.1
Msa1251520 MtrunA17_Chr2g0294231 46.774 62 32 1 345 406 203 263 2.22e-11 65.5
Msa1251520 MtrunA17_Chr3g0099641 28.289 152 96 3 260 405 167 311 2.26e-11 65.9
Msa1251520 MtrunA17_Chr8g0387981 36.264 91 53 2 312 400 102 189 2.70e-11 65.1
Msa1251520 MtrunA17_Chr2g0333851 45.312 64 35 0 343 406 167 230 2.99e-11 64.3
Msa1251520 MtrunA17_Chr8g0383251 35.955 89 53 3 320 405 80 167 5.74e-11 61.6
Msa1251520 MtrunA17_Chr8g0383351 42.424 66 36 2 343 408 158 221 6.84e-11 62.4
Msa1251520 MtrunA17_Chr3g0128671 41.573 89 43 3 314 400 103 184 7.03e-11 63.2
Msa1251520 MtrunA17_Chr7g0224801 37.662 77 45 2 343 417 91 166 7.93e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1251520 AT4G01250.1 38.365 159 81 5 264 422 63 204 9.32e-26 107
Msa1251520 AT5G52830.1 46.875 96 50 1 325 420 145 239 3.69e-23 100
Msa1251520 AT4G23550.1 48.387 93 47 1 329 421 124 215 1.68e-22 98.2
Msa1251520 AT5G45050.2 44.681 94 52 0 309 402 1116 1209 1.01e-19 93.2
Msa1251520 AT5G45050.1 44.681 94 52 0 309 402 1144 1237 1.04e-19 93.2
Msa1251520 AT5G45050.4 44.681 94 52 0 309 402 1005 1098 1.04e-19 93.2
Msa1251520 AT4G31550.2 48.315 89 43 1 325 410 222 310 1.16e-18 87.0
Msa1251520 AT4G31550.1 47.727 88 43 1 326 410 224 311 4.95e-18 85.5
Msa1251520 AT2G24570.1 48.889 90 45 1 313 402 212 300 6.49e-18 85.1
Msa1251520 AT4G24240.1 55.556 72 31 1 331 402 268 338 2.68e-17 83.6
Msa1251520 AT2G23320.1 59.649 57 23 0 346 402 241 297 2.70e-17 83.2
Msa1251520 AT5G28650.1 42.718 103 56 1 305 404 219 321 2.85e-17 83.2
Msa1251520 AT2G34830.1 44.578 83 45 1 332 414 202 283 3.98e-17 84.0
Msa1251520 AT2G34830.2 44.578 83 45 1 332 414 211 292 4.25e-17 83.6
Msa1251520 AT3G04670.1 59.322 59 24 0 346 404 263 321 1.30e-16 81.3
Msa1251520 AT1G30650.1 44.578 83 45 1 332 414 204 285 1.40e-16 82.0
Msa1251520 AT1G29280.1 57.895 57 24 0 346 402 75 131 1.73e-16 79.7
Msa1251520 AT3G58710.1 52.308 65 31 0 346 410 72 136 1.86e-16 79.7
Msa1251520 AT3G58710.2 52.308 65 31 0 346 410 71 135 1.90e-16 79.7
Msa1251520 AT3G01080.3 41.667 96 48 3 341 430 201 294 2.93e-16 80.1
Msa1251520 AT5G07100.1 39.655 116 63 3 338 447 110 224 2.95e-16 79.7
Msa1251520 AT5G07100.1 47.619 63 32 1 343 405 232 293 1.33e-12 68.9
Msa1251520 AT5G07100.2 40.351 114 61 3 340 447 19 131 6.76e-16 77.0
Msa1251520 AT5G07100.2 47.619 63 32 1 343 405 139 200 1.93e-12 67.0
Msa1251520 AT5G07100.4 40.351 114 61 3 340 447 19 131 6.76e-16 77.0
Msa1251520 AT5G07100.4 47.619 63 32 1 343 405 139 200 1.93e-12 67.0
Msa1251520 AT5G07100.5 40.351 114 61 3 340 447 19 131 6.76e-16 77.0
Msa1251520 AT5G07100.5 47.619 63 32 1 343 405 139 200 1.93e-12 67.0
Msa1251520 AT5G07100.3 40.351 114 61 3 340 447 19 131 6.76e-16 77.0
Msa1251520 AT5G07100.3 47.619 63 32 1 343 405 139 200 1.93e-12 67.0
Msa1251520 AT3G01080.1 41.667 96 48 3 341 430 163 256 9.13e-16 79.7
Msa1251520 AT3G01080.1 52.459 61 28 1 345 405 306 365 8.94e-14 73.6
Msa1251520 AT3G01080.2 41.667 96 48 3 341 430 201 294 9.94e-16 79.7
Msa1251520 AT3G01080.2 52.459 61 28 1 345 405 344 403 7.43e-14 73.9
Msa1251520 AT2G30590.1 45.679 81 41 1 325 402 290 370 1.62e-15 78.6
Msa1251520 AT2G30250.1 39.844 128 57 7 295 405 100 224 9.79e-15 76.3
Msa1251520 AT2G30250.1 51.667 60 28 1 346 405 329 387 4.21e-12 68.2
Msa1251520 AT4G26440.1 50.685 73 34 2 344 416 177 247 1.37e-14 76.6
Msa1251520 AT4G26440.1 47.297 74 38 1 343 416 370 442 9.87e-14 73.9
Msa1251520 AT2G38470.1 51.282 78 33 4 329 405 169 242 4.63e-14 74.7
Msa1251520 AT2G38470.1 48.438 64 32 1 343 406 360 422 3.19e-12 68.9
Msa1251520 AT2G03340.1 51.613 62 29 1 345 406 415 475 7.00e-14 74.3
Msa1251520 AT2G03340.1 49.296 71 34 2 340 410 245 313 2.22e-13 72.4
Msa1251520 AT5G56270.1 42.308 104 55 3 344 444 272 373 1.12e-13 73.9
Msa1251520 AT5G56270.1 48.438 64 32 1 343 406 485 547 3.31e-12 69.3
Msa1251520 AT1G13960.1 42.222 90 44 4 323 407 203 289 2.26e-13 72.4
Msa1251520 AT1G13960.1 49.180 61 30 1 345 405 409 468 1.53e-12 70.1
Msa1251520 AT2G37260.1 42.683 82 41 3 325 402 326 405 2.56e-13 72.0
Msa1251520 AT2G37260.1 50.746 67 31 2 340 406 160 224 7.70e-13 70.5
Msa1251520 AT5G41570.1 35.135 111 67 3 319 425 70 179 2.98e-13 68.6
Msa1251520 AT2G37260.3 42.683 82 41 3 325 402 246 325 3.00e-13 71.2
Msa1251520 AT2G37260.3 50.746 67 31 2 340 406 80 144 9.35e-13 69.7
Msa1251520 AT2G37260.2 42.683 82 41 3 325 402 244 323 3.18e-13 71.2
Msa1251520 AT2G37260.2 50.746 67 31 2 340 406 78 142 9.83e-13 69.7
Msa1251520 AT1G13960.2 42.222 90 44 4 323 407 50 136 3.73e-13 71.2
Msa1251520 AT1G13960.2 49.180 61 30 1 345 405 256 315 2.06e-12 68.9
Msa1251520 AT4G26640.7 39.048 105 57 4 343 444 169 269 5.62e-13 71.2
Msa1251520 AT4G26640.7 44.444 63 34 1 343 405 339 400 3.86e-11 65.5
Msa1251520 AT4G26640.2 39.048 105 57 4 343 444 209 309 6.09e-13 71.2
Msa1251520 AT4G26640.2 44.444 63 34 1 343 405 379 440 4.22e-11 65.5
Msa1251520 AT4G26640.1 39.048 105 57 4 343 444 137 237 7.21e-13 70.9
Msa1251520 AT4G26640.1 44.444 63 34 1 343 405 307 368 4.42e-11 65.5
Msa1251520 AT1G64000.1 39.241 79 47 1 324 402 93 170 9.70e-13 67.4
Msa1251520 AT2G21900.1 42.045 88 44 3 325 406 83 169 9.82e-13 67.4
Msa1251520 AT4G26640.5 39.048 105 57 4 343 444 33 133 1.02e-12 70.1
Msa1251520 AT4G26640.5 44.444 63 34 1 343 405 203 264 4.29e-11 65.1
Msa1251520 AT4G26640.6 39.048 105 57 4 343 444 33 133 1.02e-12 70.1
Msa1251520 AT4G26640.6 44.444 63 34 1 343 405 203 264 4.29e-11 65.1
Msa1251520 AT4G26640.4 39.048 105 57 4 343 444 33 133 1.02e-12 70.1
Msa1251520 AT4G26640.4 44.444 63 34 1 343 405 203 264 4.29e-11 65.1
Msa1251520 AT4G26640.3 39.048 105 57 4 343 444 33 133 1.02e-12 70.1
Msa1251520 AT4G26640.3 44.444 63 34 1 343 405 203 264 4.29e-11 65.1
Msa1251520 AT2G47260.1 41.975 81 45 2 325 405 155 233 1.47e-12 68.9
Msa1251520 AT1G55600.1 52.381 63 23 3 346 405 308 366 2.05e-12 69.3
Msa1251520 AT4G30935.1 41.176 85 43 3 322 405 312 390 2.30e-12 69.3
Msa1251520 AT4G18170.1 40.964 83 47 2 325 407 153 233 2.43e-12 68.2
Msa1251520 AT2G04880.1 40.404 99 58 1 307 405 269 366 2.67e-12 69.3
Msa1251520 AT2G04880.1 46.154 65 33 2 341 405 107 169 1.41e-11 67.0
Msa1251520 AT2G04880.2 40.404 99 58 1 307 405 245 342 3.14e-12 68.9
Msa1251520 AT2G04880.2 46.154 65 33 2 341 405 107 169 1.38e-11 67.0
Msa1251520 AT2G44745.1 50.000 62 26 3 343 402 143 201 4.49e-12 65.9
Msa1251520 AT1G69310.4 38.636 88 52 2 316 403 119 204 5.31e-12 67.0
Msa1251520 AT1G69310.2 38.636 88 52 2 316 403 119 204 5.31e-12 67.0
Msa1251520 AT1G69310.1 38.636 88 52 2 316 403 119 204 5.31e-12 67.0
Msa1251520 AT2G46130.1 41.026 78 44 2 325 402 11 86 7.09e-12 62.4
Msa1251520 AT5G45260.1 40.698 86 48 3 323 405 1185 1270 7.85e-12 68.6
Msa1251520 AT5G26170.1 45.902 61 32 1 342 402 110 169 8.58e-12 63.9
Msa1251520 AT1G80840.1 42.188 64 37 0 343 406 144 207 1.49e-11 65.9
Msa1251520 AT5G46350.1 41.558 77 43 2 331 407 170 244 1.50e-11 65.9
Msa1251520 AT5G43290.1 45.205 73 39 1 330 402 99 170 2.23e-11 64.7
Msa1251520 AT1G29860.1 42.105 76 42 2 331 406 123 196 2.47e-11 64.7
Msa1251520 AT5G49520.1 46.552 58 30 1 345 402 221 277 2.88e-11 65.5
Msa1251520 AT3G01970.1 42.466 73 39 2 343 413 63 134 3.32e-11 61.6
Msa1251520 AT5G13080.1 37.037 81 48 2 343 421 65 144 3.43e-11 61.6
Msa1251520 AT3G62340.1 36.145 83 50 2 325 405 96 177 6.01e-11 63.5
Msa1251520 AT1G80590.1 47.619 63 31 1 346 406 86 148 6.96e-11 62.8
Msa1251520 AT1G66550.2 49.123 57 27 1 346 400 104 160 9.82e-11 62.4

Find 125 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAATTTGATGACATATTC+TGG 0.180052 8_2:-47762321 None:intergenic
CGAAAACAGACACTCGATTT+TGG 0.221712 8_2:-47760771 None:intergenic
ACAGAAAACCAGCAAATAAT+TGG 0.261265 8_2:+47762278 Msa1251520:CDS
TGGATGTGGAGACCCTTTAA+TGG 0.287579 8_2:-47761191 None:intergenic
TTGGTTTAAGTGGGGATATT+GGG 0.289574 8_2:-47760198 None:intergenic
TGAGGTTCTTGTGGTTCTAA+TGG 0.291005 8_2:-47760850 None:intergenic
TTTGGTTTAAGTGGGGATAT+TGG 0.307672 8_2:-47760199 None:intergenic
TGGGGTGTTAATAGTGGTTG+TGG 0.309545 8_2:-47760614 None:intergenic
AAAGGTGACAGGAGCATTAT+AGG 0.322360 8_2:-47760050 None:intergenic
GATAGTGGTGGTAGTGATTG+AGG 0.323858 8_2:-47760308 None:intergenic
CAGAATATGTCATCAAATTC+AGG 0.324509 8_2:+47762322 Msa1251520:CDS
ATTTGCCTCATAGTTATTCA+TGG 0.325352 8_2:-47760680 None:intergenic
TAAAGCTGTAGAACTGGTTT+GGG 0.330914 8_2:-47760905 None:intergenic
TCATGGAGATGGAGAAAATA+TGG 0.338703 8_2:+47761160 Msa1251520:CDS
ATAAGATTTCAGAAGATTCA+TGG 0.343013 8_2:+47761143 Msa1251520:CDS
ATGAAGTCATTTGGTTTAAG+TGG 0.343698 8_2:-47760208 None:intergenic
GTAGAGTTCAGGATGAAAAT+TGG 0.347209 8_2:-47760824 None:intergenic
TGACAGTGGTAACGGTGGTT+GGG 0.348774 8_2:-47760633 None:intergenic
GGGGTGTTAATAGTGGTTGT+GGG 0.350268 8_2:-47760613 None:intergenic
CTCTCATGGAAAATGATGAT+TGG 0.350540 8_2:+47759990 None:intergenic
GTATCAGTGGTGATGTGATT+AGG 0.350550 8_2:-47760385 None:intergenic
TAGTTGTGATGGGATTAAAT+TGG 0.355518 8_2:-47760528 None:intergenic
ACGGAATTCCAATTATTTGC+TGG 0.359995 8_2:-47762286 None:intergenic
GTGATTGTGTTGGTGGTGAT+TGG 0.368121 8_2:-47760097 None:intergenic
CATGGTTGTGGTTGTGGTAG+TGG 0.373176 8_2:-47760662 None:intergenic
GGATGTGGAGACCCTTTAAT+GGG 0.385486 8_2:-47761190 None:intergenic
GTAAAGCTGTAGAACTGGTT+TGG 0.393862 8_2:-47760906 None:intergenic
ACTCGAGCCTTGCTGCTCTC+TGG 0.405137 8_2:-47762430 None:intergenic
GTGATGAGGGTACTGGTACT+AGG 0.405304 8_2:-47760580 None:intergenic
CTCATAGTTATTCATGGTTG+TGG 0.413400 8_2:-47760674 None:intergenic
TTGAGCAACATCCAGCTTCT+CGG 0.416229 8_2:-47762357 None:intergenic
TATCAGTGGTGATGTGATTA+GGG 0.416997 8_2:-47760384 None:intergenic
TCTAATGGATGGTAGAGTTC+AGG 0.417884 8_2:-47760835 None:intergenic
GTTATTCATGGTTGTGGTTG+TGG 0.422052 8_2:-47760668 None:intergenic
ATGAATAACTATGAGGCAAA+TGG 0.426471 8_2:+47760682 Msa1251520:CDS
TTGCTCAAACGTTAGAAACT+TGG 0.430903 8_2:+47762372 Msa1251520:CDS
ATAGTGGTGGTAGTGATTGA+GGG 0.431068 8_2:-47760307 None:intergenic
GTTGTTGTTCAACGAGCATT+GGG 0.432884 8_2:-47760735 None:intergenic
TCTAGTTCGATGAAGTCATT+TGG 0.435609 8_2:-47760217 None:intergenic
TCTCATGGAAAATGATGATT+GGG 0.436690 8_2:+47759991 None:intergenic
TGCTGCAACATTACCACATT+AGG 0.438405 8_2:-47762400 None:intergenic
ACTTATGAAGTGACATATAT+AGG 0.438664 8_2:+47762244 Msa1251520:CDS
TCATCAAATTCAGGATTAGA+TGG 0.442631 8_2:+47762331 Msa1251520:CDS
TGAATTTGATGACATATTCT+GGG 0.443651 8_2:-47762320 None:intergenic
ATTCAGTAAAGCTGTAGAAC+TGG 0.445259 8_2:-47760911 None:intergenic
GTTATTTGTGATTGTGTTGG+TGG 0.447385 8_2:-47760104 None:intergenic
TGTTGTTGTTCAACGAGCAT+TGG 0.450106 8_2:-47760736 None:intergenic
TTAGATGGTGTCCGAGAAGC+TGG 0.454965 8_2:+47762346 Msa1251520:CDS
GGTCAACGAGGTGGGGATAG+TGG 0.460565 8_2:-47760323 None:intergenic
GGCGGTGATAATTGTGGTAT+TGG 0.462287 8_2:-47760344 None:intergenic
GTTGGGATATCGCTTGTAGT+AGG 0.465743 8_2:-47760283 None:intergenic
TGATGAGGGTACTGGTACTA+GGG 0.466212 8_2:-47760579 None:intergenic
TGGCGTTGCAGTTTCACAAA+AGG 0.467843 8_2:-47760068 None:intergenic
ATGACAGTGGTAACGGTGGT+TGG 0.471017 8_2:-47760634 None:intergenic
GACAGTGGTAACGGTGGTTG+GGG 0.476030 8_2:-47760632 None:intergenic
TTGTGTTGGTGGTGATTGGT+AGG 0.483271 8_2:-47760093 None:intergenic
GGAGTAGTGATAGTGGAGAT+CGG 0.486295 8_2:-47760553 None:intergenic
TGATTTCTCTGAGGTTCTTG+TGG 0.486334 8_2:-47760859 None:intergenic
AATGCTCGTTGAACAACAAC+AGG 0.486815 8_2:+47760738 Msa1251520:CDS
TTGGTGGTGATTGGTAGGAT+TGG 0.489952 8_2:-47760088 None:intergenic
GGTGGTTGGGGTGTTAATAG+TGG 0.490151 8_2:-47760620 None:intergenic
TGAAGTCATTTGGTTTAAGT+GGG 0.492180 8_2:-47760207 None:intergenic
TGCTCAAACGTTAGAAACTT+GGG 0.493239 8_2:+47762373 Msa1251520:CDS
CTGGTTTGGGGTAGTAGAAT+CGG 0.494141 8_2:-47760892 None:intergenic
AATAATTGGAATTCCGTTGT+TGG 0.498386 8_2:+47762292 Msa1251520:CDS
ATATCGCTTGTAGTAGGGAT+AGG 0.499398 8_2:-47760277 None:intergenic
ATTAGGGATGGTAATGGTCG+AGG 0.505116 8_2:-47760368 None:intergenic
AGCAAGGCTCGAGTTCTTGA+TGG 0.505440 8_2:+47762439 Msa1251520:CDS
GGAGATCGGGATAGTTGTGA+TGG 0.506503 8_2:-47760539 None:intergenic
ATCACTAACACTAGTTCTCA+TGG 0.507818 8_2:+47760409 Msa1251520:CDS
GTGGTATTGGTCAACGAGGT+GGG 0.509472 8_2:-47760331 None:intergenic
TTTCAGAAGATTCATGGAGA+TGG 0.509856 8_2:+47761149 Msa1251520:CDS
GAGTAGTGATAGTGGAGATC+GGG 0.510373 8_2:-47760552 None:intergenic
AGGGTACTGGTACTAGGGTT+GGG 0.510688 8_2:-47760574 None:intergenic
GATGTTATTTGTGATTGTGT+TGG 0.523003 8_2:-47760107 None:intergenic
GCAGTTTCACAAAAGGTGAC+AGG 0.524134 8_2:-47760061 None:intergenic
GGTGGTTGTAGTCTTAATGC+AGG 0.525304 8_2:-47760803 None:intergenic
TATCGCTTGTAGTAGGGATA+GGG 0.527079 8_2:-47760276 None:intergenic
GTTCTTGTGGTTCTAATGGA+TGG 0.535083 8_2:-47760846 None:intergenic
GAGGGTACTGGTACTAGGGT+TGG 0.536128 8_2:-47760575 None:intergenic
AAATAATAACCAAGTGACAT+TGG 0.536349 8_2:+47761102 Msa1251520:CDS
CATAGCTCACCAATGTCACT+TGG 0.536490 8_2:-47761111 None:intergenic
TTAGGGATGGTAATGGTCGA+GGG 0.543284 8_2:-47760367 None:intergenic
ATTGGGAAATTAGAAACGGT+TGG 0.546933 8_2:-47760718 None:intergenic
TCTAACTCAGTGAACTCACT+TGG 0.548044 8_2:-47760493 None:intergenic
GAGCATTGGGAAATTAGAAA+CGG 0.548826 8_2:-47760722 None:intergenic
TTGGGATATCGCTTGTAGTA+GGG 0.553531 8_2:-47760282 None:intergenic
AGGGTTGGGAGTAGTGATAG+TGG 0.555742 8_2:-47760560 None:intergenic
ATCTGTTGTTGTTCAATGAG+TGG 0.561228 8_2:-47760466 None:intergenic
AAACTTGGGTTCTCCTAATG+TGG 0.561663 8_2:+47762387 Msa1251520:CDS
GAGTTCAGGATGAAAATTGG+TGG 0.562740 8_2:-47760821 None:intergenic
CACAACCATGAATAACTATG+AGG 0.567159 8_2:+47760675 Msa1251520:CDS
GTTGTGGTTGTGGTAGTGGT+AGG 0.570383 8_2:-47760658 None:intergenic
AGTGAAGGTGATGAGGGTAC+TGG 0.571653 8_2:-47760587 None:intergenic
GGGTGTTAATAGTGGTTGTG+GGG 0.572392 8_2:-47760612 None:intergenic
GGTAGGAATGACAGTGGTAA+CGG 0.583862 8_2:-47760641 None:intergenic
TTAAAGGGTCTCCACATCCA+AGG 0.584498 8_2:+47761194 Msa1251520:CDS
AGGGATGGTAATGGTCGAGG+GGG 0.588798 8_2:-47760365 None:intergenic
GAGATCGGGATAGTTGTGAT+GGG 0.597238 8_2:-47760538 None:intergenic
TAGTGGTGGTAGTGATTGAG+GGG 0.614452 8_2:-47760306 None:intergenic
CAACGAGGTGGGGATAGTGG+TGG 0.618355 8_2:-47760320 None:intergenic
GAAGTCATTTGGTTTAAGTG+GGG 0.620194 8_2:-47760206 None:intergenic
AATATGACGTGGTGTTGTGA+GGG 0.620814 8_2:-47760135 None:intergenic
CAATATGACGTGGTGTTGTG+AGG 0.624759 8_2:-47760136 None:intergenic
TGTTGTTGTTCAATGAGTGG+TGG 0.628428 8_2:-47760463 None:intergenic
ATGAGAACTAGTGTTAGTGA+TGG 0.631276 8_2:-47760407 None:intergenic
TGTGGTATTGGTCAACGAGG+TGG 0.633309 8_2:-47760332 None:intergenic
GGTGTTAATAGTGGTTGTGG+GGG 0.637232 8_2:-47760611 None:intergenic
TGGTATTGGTCAACGAGGTG+GGG 0.652088 8_2:-47760330 None:intergenic
ATTCTGGGAGCTACCAACAA+CGG 0.652456 8_2:-47762305 None:intergenic
GATGTGATTAGGGATGGTAA+TGG 0.654053 8_2:-47760374 None:intergenic
AGTGGTGGTAGTGATTGAGG+GGG 0.657078 8_2:-47760305 None:intergenic
AGTGGTGATGTGATTAGGGA+TGG 0.659025 8_2:-47760380 None:intergenic
AGTTGATTATGATTTCTCTG+AGG 0.672197 8_2:-47760868 None:intergenic
TAGGGATGGTAATGGTCGAG+GGG 0.673167 8_2:-47760366 None:intergenic
AAAGCTGTAGAACTGGTTTG+GGG 0.677184 8_2:-47760904 None:intergenic
ATCATCAAAGCAATATGACG+TGG 0.680013 8_2:-47760146 None:intergenic
AGTGTTAGTGATGGTATCAG+TGG 0.685752 8_2:-47760398 None:intergenic
TGATCATCCAGAGAGCAGCA+AGG 0.696293 8_2:+47762423 Msa1251520:CDS
GACATTGGTGAGCTATGTGA+AGG 0.706817 8_2:+47761117 Msa1251520:CDS
ATATGACGTGGTGTTGTGAG+GGG 0.714347 8_2:-47760134 None:intergenic
GGTGACAGGAGCATTATAGG+TGG 0.716066 8_2:-47760047 None:intergenic
GGTAGTGGTAGGAATGACAG+TGG 0.772669 8_2:-47760647 None:intergenic
AGGAATGACAGTGGTAACGG+TGG 0.786535 8_2:-47760638 None:intergenic
AATTGTGGTATTGGTCAACG+AGG 0.817467 8_2:-47760335 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAAAATTATATATTTTT+AGG + chr8_2:47761851-47761870 Msa1251520:intron 0.0%
!!! TAAAAAATTATATATTTTTA+GGG + chr8_2:47761852-47761871 Msa1251520:intron 0.0%
!! GGAATAAAAATTAATATTAA+AGG - chr8_2:47761732-47761751 None:intergenic 10.0%
!!! CAATATGAATAAATTTTGTA+GGG + chr8_2:47761751-47761770 Msa1251520:intron 15.0%
!!! GGTTTAAATTTTTGTTGTTT+CGG - chr8_2:47760943-47760962 None:intergenic 20.0%
!! AAACAACAAAAATTTAAACC+AGG + chr8_2:47760943-47760962 Msa1251520:CDS 20.0%
!! AAAAATTTAAACCAGGAAAA+AGG + chr8_2:47760950-47760969 Msa1251520:CDS 20.0%
!!! TTTTTTCTACAAGAAAAGAA+GGG - chr8_2:47761085-47761104 None:intergenic 20.0%
!!! ATTTTTTCTACAAGAAAAGA+AGG - chr8_2:47761086-47761105 None:intergenic 20.0%
!! TTAGAATGAATAAAAAACCT+TGG - chr8_2:47761214-47761233 None:intergenic 20.0%
!! TTAGTTAAATGTGACAAATA+TGG + chr8_2:47761370-47761389 Msa1251520:intron 20.0%
!! CAAAAAATGATACATATACA+AGG - chr8_2:47761567-47761586 None:intergenic 20.0%
!! TCAAAAACAAAAAATCAAAG+AGG - chr8_2:47761626-47761645 None:intergenic 20.0%
!! CCTACAAAATTTATTCATAT+TGG - chr8_2:47761753-47761772 None:intergenic 20.0%
!!! CCAATATGAATAAATTTTGT+AGG + chr8_2:47761750-47761769 Msa1251520:intron 20.0%
!! TCATATAGACACATATAAAT+AGG - chr8_2:47762080-47762099 None:intergenic 20.0%
! AAATAATAACCAAGTGACAT+TGG + chr8_2:47761102-47761121 Msa1251520:CDS 25.0%
! ATAAGATTTCAGAAGATTCA+TGG + chr8_2:47761143-47761162 Msa1251520:CDS 25.0%
!!! CTAATTAAAACCATTGGTTT+GGG - chr8_2:47761311-47761330 None:intergenic 25.0%
!! ACTAATTAAAACCATTGGTT+TGG - chr8_2:47761312-47761331 None:intergenic 25.0%
! CAAACACTGAAATAAAAATG+TGG + chr8_2:47761788-47761807 Msa1251520:intron 25.0%
! TTGTTTAGCAAAAAAACTAG+TGG + chr8_2:47762198-47762217 Msa1251520:CDS 25.0%
! ACTTATGAAGTGACATATAT+AGG + chr8_2:47762244-47762263 Msa1251520:CDS 25.0%
!! TGAATTTGATGACATATTCT+GGG - chr8_2:47762323-47762342 None:intergenic 25.0%
! GATGTTATTTGTGATTGTGT+TGG - chr8_2:47760110-47760129 None:intergenic 30.0%
! TGAAGTCATTTGGTTTAAGT+GGG - chr8_2:47760210-47760229 None:intergenic 30.0%
! ATGAAGTCATTTGGTTTAAG+TGG - chr8_2:47760211-47760230 None:intergenic 30.0%
! AGGGATAATTTTTGTAGGAT+TGG - chr8_2:47760260-47760279 None:intergenic 30.0%
! TAGTTGTGATGGGATTAAAT+TGG - chr8_2:47760531-47760550 None:intergenic 30.0%
ATTTGCCTCATAGTTATTCA+TGG - chr8_2:47760683-47760702 None:intergenic 30.0%
ATGAATAACTATGAGGCAAA+TGG + chr8_2:47760682-47760701 Msa1251520:CDS 30.0%
AGTTGATTATGATTTCTCTG+AGG - chr8_2:47760871-47760890 None:intergenic 30.0%
! TCAATTCTTTACCTTTTTCC+TGG - chr8_2:47760964-47760983 None:intergenic 30.0%
! AAGAAGGGTAAGATACTTTT+CGG - chr8_2:47761070-47761089 None:intergenic 30.0%
TATGGACAAAAACCCATTAA+AGG + chr8_2:47761178-47761197 Msa1251520:CDS 30.0%
ATGGACAAAAACCCATTAAA+GGG + chr8_2:47761179-47761198 Msa1251520:CDS 30.0%
TGAATAAAAAACCTTGGATG+TGG - chr8_2:47761208-47761227 None:intergenic 30.0%
TGGTCACTAATTAAAACCAT+TGG - chr8_2:47761317-47761336 None:intergenic 30.0%
AAGAAAGATCAAAATGCATG+TGG - chr8_2:47761337-47761356 None:intergenic 30.0%
ACCAAGCATTAAAGAACAAA+GGG - chr8_2:47761665-47761684 None:intergenic 30.0%
TACCAAGCATTAAAGAACAA+AGG - chr8_2:47761666-47761685 None:intergenic 30.0%
ATGTAAATGTAAGCGAGAAT+AGG - chr8_2:47761985-47762004 None:intergenic 30.0%
ATGTATTATTTCACGTATCG+TGG + chr8_2:47762016-47762035 Msa1251520:intron 30.0%
TGTATTATTTCACGTATCGT+GGG + chr8_2:47762017-47762036 Msa1251520:intron 30.0%
CTAGTGGAGAAAATAAAAAC+TGG + chr8_2:47762214-47762233 Msa1251520:CDS 30.0%
ACAGAAAACCAGCAAATAAT+TGG + chr8_2:47762278-47762297 Msa1251520:CDS 30.0%
AATAATTGGAATTCCGTTGT+TGG + chr8_2:47762292-47762311 Msa1251520:CDS 30.0%
! CTGAATTTGATGACATATTC+TGG - chr8_2:47762324-47762343 None:intergenic 30.0%
CAGAATATGTCATCAAATTC+AGG + chr8_2:47762322-47762341 Msa1251520:CDS 30.0%
TCATCAAATTCAGGATTAGA+TGG + chr8_2:47762331-47762350 Msa1251520:CDS 30.0%
GTTATTTGTGATTGTGTTGG+TGG - chr8_2:47760107-47760126 None:intergenic 35.0%
ATCATCAAAGCAATATGACG+TGG - chr8_2:47760149-47760168 None:intergenic 35.0%
!!! TGGGATTGTGCTATTTTCTT+GGG - chr8_2:47760182-47760201 None:intergenic 35.0%
!!! TTGGGATTGTGCTATTTTCT+TGG - chr8_2:47760183-47760202 None:intergenic 35.0%
TTGGTTTAAGTGGGGATATT+GGG - chr8_2:47760201-47760220 None:intergenic 35.0%
! TTTGGTTTAAGTGGGGATAT+TGG - chr8_2:47760202-47760221 None:intergenic 35.0%
! GAAGTCATTTGGTTTAAGTG+GGG - chr8_2:47760209-47760228 None:intergenic 35.0%
! TCTAGTTCGATGAAGTCATT+TGG - chr8_2:47760220-47760239 None:intergenic 35.0%
! GGGATAGGGATAATTTTTGT+AGG - chr8_2:47760265-47760284 None:intergenic 35.0%
! TATCAGTGGTGATGTGATTA+GGG - chr8_2:47760387-47760406 None:intergenic 35.0%
ATGAGAACTAGTGTTAGTGA+TGG - chr8_2:47760410-47760429 None:intergenic 35.0%
! ATCACTAACACTAGTTCTCA+TGG + chr8_2:47760409-47760428 Msa1251520:CDS 35.0%
! ATCTGTTGTTGTTCAATGAG+TGG - chr8_2:47760469-47760488 None:intergenic 35.0%
CTCATAGTTATTCATGGTTG+TGG - chr8_2:47760677-47760696 None:intergenic 35.0%
CACAACCATGAATAACTATG+AGG + chr8_2:47760675-47760694 Msa1251520:CDS 35.0%
ATTGGGAAATTAGAAACGGT+TGG - chr8_2:47760721-47760740 None:intergenic 35.0%
!! GAGCATTGGGAAATTAGAAA+CGG - chr8_2:47760725-47760744 None:intergenic 35.0%
GTAGAGTTCAGGATGAAAAT+TGG - chr8_2:47760827-47760846 None:intergenic 35.0%
! TAAAGCTGTAGAACTGGTTT+GGG - chr8_2:47760908-47760927 None:intergenic 35.0%
ATTCAGTAAAGCTGTAGAAC+TGG - chr8_2:47760914-47760933 None:intergenic 35.0%
TTTCAGAAGATTCATGGAGA+TGG + chr8_2:47761149-47761168 Msa1251520:CDS 35.0%
TCATGGAGATGGAGAAAATA+TGG + chr8_2:47761160-47761179 Msa1251520:CDS 35.0%
! GACAAATATGGTCTTGATAG+TGG + chr8_2:47761382-47761401 Msa1251520:intron 35.0%
CAAGCATTAAAGAACAAAGG+GGG - chr8_2:47761663-47761682 None:intergenic 35.0%
CCAAGCATTAAAGAACAAAG+GGG - chr8_2:47761664-47761683 None:intergenic 35.0%
CAATCAATGAATGACTTTGC+AGG + chr8_2:47762146-47762165 Msa1251520:intron 35.0%
GGAGAAAATAAAAACTGGAG+AGG + chr8_2:47762219-47762238 Msa1251520:CDS 35.0%
ACGGAATTCCAATTATTTGC+TGG - chr8_2:47762289-47762308 None:intergenic 35.0%
TTGCTCAAACGTTAGAAACT+TGG + chr8_2:47762372-47762391 Msa1251520:CDS 35.0%
TGCTCAAACGTTAGAAACTT+GGG + chr8_2:47762373-47762392 Msa1251520:CDS 35.0%
!! AAAGGTGACAGGAGCATTAT+AGG - chr8_2:47760053-47760072 None:intergenic 40.0%
!! AATATGACGTGGTGTTGTGA+GGG - chr8_2:47760138-47760157 None:intergenic 40.0%
TATCGCTTGTAGTAGGGATA+GGG - chr8_2:47760279-47760298 None:intergenic 40.0%
ATATCGCTTGTAGTAGGGAT+AGG - chr8_2:47760280-47760299 None:intergenic 40.0%
TTGGGATATCGCTTGTAGTA+GGG - chr8_2:47760285-47760304 None:intergenic 40.0%
! ATAGTGGTGGTAGTGATTGA+GGG - chr8_2:47760310-47760329 None:intergenic 40.0%
!! AATTGTGGTATTGGTCAACG+AGG - chr8_2:47760338-47760357 None:intergenic 40.0%
GATGTGATTAGGGATGGTAA+TGG - chr8_2:47760377-47760396 None:intergenic 40.0%
! GTATCAGTGGTGATGTGATT+AGG - chr8_2:47760388-47760407 None:intergenic 40.0%
AGTGTTAGTGATGGTATCAG+TGG - chr8_2:47760401-47760420 None:intergenic 40.0%
! TGTTGTTGTTCAATGAGTGG+TGG - chr8_2:47760466-47760485 None:intergenic 40.0%
TCTAACTCAGTGAACTCACT+TGG - chr8_2:47760496-47760515 None:intergenic 40.0%
GTTATTCATGGTTGTGGTTG+TGG - chr8_2:47760671-47760690 None:intergenic 40.0%
! GTTGTTGTTCAACGAGCATT+GGG - chr8_2:47760738-47760757 None:intergenic 40.0%
! TGTTGTTGTTCAACGAGCAT+TGG - chr8_2:47760739-47760758 None:intergenic 40.0%
AATGCTCGTTGAACAACAAC+AGG + chr8_2:47760738-47760757 Msa1251520:CDS 40.0%
! CGAAAACAGACACTCGATTT+TGG - chr8_2:47760774-47760793 None:intergenic 40.0%
GAGTTCAGGATGAAAATTGG+TGG - chr8_2:47760824-47760843 None:intergenic 40.0%
! TCTAATGGATGGTAGAGTTC+AGG - chr8_2:47760838-47760857 None:intergenic 40.0%
!! GTTCTTGTGGTTCTAATGGA+TGG - chr8_2:47760849-47760868 None:intergenic 40.0%
!! TGAGGTTCTTGTGGTTCTAA+TGG - chr8_2:47760853-47760872 None:intergenic 40.0%
!! TGATTTCTCTGAGGTTCTTG+TGG - chr8_2:47760862-47760881 None:intergenic 40.0%
!! AAAGCTGTAGAACTGGTTTG+GGG - chr8_2:47760907-47760926 None:intergenic 40.0%
GTAAAGCTGTAGAACTGGTT+TGG - chr8_2:47760909-47760928 None:intergenic 40.0%
!! AAAACCATTGGTTTGGGTGT+GGG - chr8_2:47761305-47761324 None:intergenic 40.0%
!! TAAAACCATTGGTTTGGGTG+TGG - chr8_2:47761306-47761325 None:intergenic 40.0%
CCCCTTTGTTCTTTAATGCT+TGG + chr8_2:47761661-47761680 Msa1251520:intron 40.0%
TTATTTCACGTATCGTGGGA+CGG + chr8_2:47762021-47762040 Msa1251520:intron 40.0%
AAACTTGGGTTCTCCTAATG+TGG + chr8_2:47762387-47762406 Msa1251520:CDS 40.0%
TGCTGCAACATTACCACATT+AGG - chr8_2:47762403-47762422 None:intergenic 40.0%
GCAGTTTCACAAAAGGTGAC+AGG - chr8_2:47760064-47760083 None:intergenic 45.0%
TGGCGTTGCAGTTTCACAAA+AGG - chr8_2:47760071-47760090 None:intergenic 45.0%
!! TTGGTGGTGATTGGTAGGAT+TGG - chr8_2:47760091-47760110 None:intergenic 45.0%
!! TTGTGTTGGTGGTGATTGGT+AGG - chr8_2:47760096-47760115 None:intergenic 45.0%
!! GTGATTGTGTTGGTGGTGAT+TGG - chr8_2:47760100-47760119 None:intergenic 45.0%
!! ATATGACGTGGTGTTGTGAG+GGG - chr8_2:47760137-47760156 None:intergenic 45.0%
!! CAATATGACGTGGTGTTGTG+AGG - chr8_2:47760139-47760158 None:intergenic 45.0%
GTTGGGATATCGCTTGTAGT+AGG - chr8_2:47760286-47760305 None:intergenic 45.0%
! TAGTGGTGGTAGTGATTGAG+GGG - chr8_2:47760309-47760328 None:intergenic 45.0%
! GATAGTGGTGGTAGTGATTG+AGG - chr8_2:47760311-47760330 None:intergenic 45.0%
GGCGGTGATAATTGTGGTAT+TGG - chr8_2:47760347-47760366 None:intergenic 45.0%
!! TTAGGGATGGTAATGGTCGA+GGG - chr8_2:47760370-47760389 None:intergenic 45.0%
!! ATTAGGGATGGTAATGGTCG+AGG - chr8_2:47760371-47760390 None:intergenic 45.0%
! AGTGGTGATGTGATTAGGGA+TGG - chr8_2:47760383-47760402 None:intergenic 45.0%
GAGATCGGGATAGTTGTGAT+GGG - chr8_2:47760541-47760560 None:intergenic 45.0%
!! GAGTAGTGATAGTGGAGATC+GGG - chr8_2:47760555-47760574 None:intergenic 45.0%
!! GGAGTAGTGATAGTGGAGAT+CGG - chr8_2:47760556-47760575 None:intergenic 45.0%
!! TGATGAGGGTACTGGTACTA+GGG - chr8_2:47760582-47760601 None:intergenic 45.0%
GGTGTTAATAGTGGTTGTGG+GGG - chr8_2:47760614-47760633 None:intergenic 45.0%
GGGTGTTAATAGTGGTTGTG+GGG - chr8_2:47760615-47760634 None:intergenic 45.0%
! GGGGTGTTAATAGTGGTTGT+GGG - chr8_2:47760616-47760635 None:intergenic 45.0%
! TGGGGTGTTAATAGTGGTTG+TGG - chr8_2:47760617-47760636 None:intergenic 45.0%
GGTAGGAATGACAGTGGTAA+CGG - chr8_2:47760644-47760663 None:intergenic 45.0%
! GGTGGTTGTAGTCTTAATGC+AGG - chr8_2:47760806-47760825 None:intergenic 45.0%
!! CTGGTTTGGGGTAGTAGAAT+CGG - chr8_2:47760895-47760914 None:intergenic 45.0%
CATAGCTCACCAATGTCACT+TGG - chr8_2:47761114-47761133 None:intergenic 45.0%
GACATTGGTGAGCTATGTGA+AGG + chr8_2:47761117-47761136 Msa1251520:CDS 45.0%
GGATGTGGAGACCCTTTAAT+GGG - chr8_2:47761193-47761212 None:intergenic 45.0%
TGGATGTGGAGACCCTTTAA+TGG - chr8_2:47761194-47761213 None:intergenic 45.0%
TTAAAGGGTCTCCACATCCA+AGG + chr8_2:47761194-47761213 Msa1251520:CDS 45.0%
! ATTCTGGGAGCTACCAACAA+CGG - chr8_2:47762308-47762327 None:intergenic 45.0%
TTGAGCAACATCCAGCTTCT+CGG - chr8_2:47762360-47762379 None:intergenic 45.0%
!! TATAAAATATATTAAATAGT+AGG - chr8_2:47760989-47761008 None:intergenic 5.0%
!!! ATTTTGTTTTATATTAAAAT+TGG + chr8_2:47761704-47761723 Msa1251520:intron 5.0%
!! GGTGACAGGAGCATTATAGG+TGG - chr8_2:47760050-47760069 None:intergenic 50.0%
! TGGTAGTGATTGAGGGGGTT+GGG - chr8_2:47760303-47760322 None:intergenic 50.0%
! AGTGGTGGTAGTGATTGAGG+GGG - chr8_2:47760308-47760327 None:intergenic 50.0%
!! TGGTATTGGTCAACGAGGTG+GGG - chr8_2:47760333-47760352 None:intergenic 50.0%
!! GTGGTATTGGTCAACGAGGT+GGG - chr8_2:47760334-47760353 None:intergenic 50.0%
!! TGTGGTATTGGTCAACGAGG+TGG - chr8_2:47760335-47760354 None:intergenic 50.0%
!! TAGGGATGGTAATGGTCGAG+GGG - chr8_2:47760369-47760388 None:intergenic 50.0%
GGAGATCGGGATAGTTGTGA+TGG - chr8_2:47760542-47760561 None:intergenic 50.0%
AGGGTTGGGAGTAGTGATAG+TGG - chr8_2:47760563-47760582 None:intergenic 50.0%
!! AGGGTACTGGTACTAGGGTT+GGG - chr8_2:47760577-47760596 None:intergenic 50.0%
!! GTGATGAGGGTACTGGTACT+AGG - chr8_2:47760583-47760602 None:intergenic 50.0%
! AGTGAAGGTGATGAGGGTAC+TGG - chr8_2:47760590-47760609 None:intergenic 50.0%
! GGTGGTTGGGGTGTTAATAG+TGG - chr8_2:47760623-47760642 None:intergenic 50.0%
!! TGACAGTGGTAACGGTGGTT+GGG - chr8_2:47760636-47760655 None:intergenic 50.0%
!! ATGACAGTGGTAACGGTGGT+TGG - chr8_2:47760637-47760656 None:intergenic 50.0%
!! AGGAATGACAGTGGTAACGG+TGG - chr8_2:47760641-47760660 None:intergenic 50.0%
! GGTAGTGGTAGGAATGACAG+TGG - chr8_2:47760650-47760669 None:intergenic 50.0%
!! GTTGTGGTTGTGGTAGTGGT+AGG - chr8_2:47760661-47760680 None:intergenic 50.0%
CATGGTTGTGGTTGTGGTAG+TGG - chr8_2:47760665-47760684 None:intergenic 50.0%
TGGGTGTGGGTGTGTGTATT+AGG - chr8_2:47761292-47761311 None:intergenic 50.0%
TTAGATGGTGTCCGAGAAGC+TGG + chr8_2:47762346-47762365 Msa1251520:CDS 50.0%
TGATCATCCAGAGAGCAGCA+AGG + chr8_2:47762423-47762442 Msa1251520:CDS 50.0%
AGCAAGGCTCGAGTTCTTGA+TGG + chr8_2:47762439-47762458 Msa1251520:CDS 50.0%
! GTGGTAGTGATTGAGGGGGT+TGG - chr8_2:47760304-47760323 None:intergenic 55.0%
!! AGGGATGGTAATGGTCGAGG+GGG - chr8_2:47760368-47760387 None:intergenic 55.0%
!! GAGGGTACTGGTACTAGGGT+TGG - chr8_2:47760578-47760597 None:intergenic 55.0%
GGGGGTAGTGAAGGTGATGA+GGG - chr8_2:47760596-47760615 None:intergenic 55.0%
TGGGGGTAGTGAAGGTGATG+AGG - chr8_2:47760597-47760616 None:intergenic 55.0%
AGTGGTTGTGGGGGTAGTGA+AGG - chr8_2:47760605-47760624 None:intergenic 55.0%
!! GACAGTGGTAACGGTGGTTG+GGG - chr8_2:47760635-47760654 None:intergenic 55.0%
CACACCCACACCCAAACCAA+TGG + chr8_2:47761298-47761317 Msa1251520:intron 55.0%
! CAACGAGGTGGGGATAGTGG+TGG - chr8_2:47760323-47760342 None:intergenic 60.0%
GGTCAACGAGGTGGGGATAG+TGG - chr8_2:47760326-47760345 None:intergenic 60.0%
CGAGGGGGCGGTGATAATTG+TGG - chr8_2:47760353-47760372 None:intergenic 60.0%
!! GATGGTAATGGTCGAGGGGG+CGG - chr8_2:47760365-47760384 None:intergenic 60.0%
ACTCGAGCCTTGCTGCTCTC+TGG - chr8_2:47762433-47762452 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 47759995 47762468 47759995 ID=Msa1251520;Name=Msa1251520
chr8_2 mRNA 47759995 47762468 47759995 ID=Msa1251520-mRNA-1;Parent=Msa1251520;Name=Msa1251520-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|1|1|3|0|464
chr8_2 exon 47759995 47760971 47759995 ID=Msa1251520-mRNA-1:exon:14398;Parent=Msa1251520-mRNA-1
chr8_2 exon 47761099 47761215 47761099 ID=Msa1251520-mRNA-1:exon:14399;Parent=Msa1251520-mRNA-1
chr8_2 exon 47762168 47762468 47762168 ID=Msa1251520-mRNA-1:exon:14400;Parent=Msa1251520-mRNA-1
chr8_2 CDS 47759995 47760971 47759995 ID=Msa1251520-mRNA-1:cds;Parent=Msa1251520-mRNA-1
chr8_2 CDS 47761099 47761215 47761099 ID=Msa1251520-mRNA-1:cds;Parent=Msa1251520-mRNA-1
chr8_2 CDS 47762168 47762468 47762168 ID=Msa1251520-mRNA-1:cds;Parent=Msa1251520-mRNA-1
Gene Sequence

>Msa1251520

ATGGAAAATGATGATTGGGATCTCTTTTCTATTGTGCGTAGCTGCAAAGCTACCACCTATAATGCTCCTGTCACCTTTTGTGAAACTGCAACGCCAATCCTACCAATCACCACCAACACAATCACAAATAACATCACATCCCCTCACAACACCACGTCATATTGCTTTGATGATTTTACACTTACCCAAGAAAATAGCACAATCCCAATATCCCCACTTAAACCAAATGACTTCATCGAACTAGACAAATTGATCATTTGTTCCAATCCTACAAAAATTATCCCTATCCCTACTACAAGCGATATCCCAACCCCCTCAATCACTACCACCACTATCCCCACCTCGTTGACCAATACCACAATTATCACCGCCCCCTCGACCATTACCATCCCTAATCACATCACCACTGATACCATCACTAACACTAGTTCTCATGGATCAGATCAAAATTCTACATTTTTTTATTTTCCACCACTCATTGAACAACAACAGATGCAACCAAGTGAGTTCACTGAGTTAGAAAAATGTATACTCCAATTTAATCCCATCACAACTATCCCGATCTCCACTATCACTACTCCCAACCCTAGTACCAGTACCCTCATCACCTTCACTACCCCCACAACCACTATTAACACCCCAACCACCGTTACCACTGTCATTCCTACCACTACCACAACCACAACCATGAATAACTATGAGGCAAATGGAATCAATCAATATCCAACCGTTTCTAATTTCCCAATGCTCGTTGAACAACAACAGGTTCAAGCAAACCAAAATCGAGTGTCTGTTTTCGACTCTATTTCCTGCATTAAGACTACAACCACCAATTTTCATCCTGAACTCTACCATCCATTAGAACCACAAGAACCTCAGAGAAATCATAATCAACTACCGATTCTACTACCCCAAACCAGTTCTACAGCTTTACTGAATACAAAACCGAAACAACAAAAATTTAAACCAGGAAAAAGAAAAAATAATAACCAAGTGACATTGGTGAGCTATGTGAAGGCAGATAAGATTTCAGAAGATTCATGGAGATGGAGAAAATATGGACAAAAACCCATTAAAGGGTCTCCACATCCAAGGAGCTACTTCAAATGTAGCAGTTTCAACGATTGTTTAGCAAAAAAACTAGTGGAGAAAATAAAAACTGGAGAGGACACTTATGAAGTGACATATATAGGAGAACACAATCACAGAAAACCAGCAAATAATTGGAATTCCGTTGTTGGTAGCTCCCAGAATATGTCATCAAATTCAGGATTAGATGGTGTCCGAGAAGCTGGATGTTGCTCAAACGTTAGAAACTTGGGTTCTCCTAATGTGGTAATGTTGCAGCATGATCATCCAGAGAGCAGCAAGGCTCGAGTTCTTGATGGTGAATAA
Protein sequence

>Msa1251520

MENDDWDLFSIVRSCKATTYNAPVTFCETATPILPITTNTITNNITSPHNTTSYCFDDFTLTQENSTIPISPLKPNDFIELDKLIICSNPTKIIPIPTTSDIPTPSITTTTIPTSLTNTTIITAPSTITIPNHITTDTITNTSSHGSDQNSTFFYFPPLIEQQQMQPSEFTELEKCILQFNPITTIPISTITTPNPSTSTLITFTTPTTTINTPTTVTTVIPTTTTTTTMNNYEANGINQYPTVSNFPMLVEQQQVQANQNRVSVFDSISCIKTTTTNFHPELYHPLEPQEPQRNHNQLPILLPQTSSTALLNTKPKQQKFKPGKRKNNNQVTLVSYVKADKISEDSWRWRKYGQKPIKGSPHPRSYFKCSSFNDCLAKKLVEKIKTGEDTYEVTYIGEHNHRKPANNWNSVVGSSQNMSSNSGLDGVREAGCCSNVRNLGSPNVVMLQHDHPESSKARVLDGE*