AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1253140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1253140 MtrunA17_Chr1g0194201 87.838 74 9 0 2 75 239 312 4.64e-44 146
Msa1253140 MtrunA17_Chr7g0270371 90.541 74 7 0 2 75 239 312 7.48e-44 145
Msa1253140 MtrunA17_Chr7g0246591 85.135 74 11 0 2 75 305 378 1.16e-43 146
Msa1253140 MtrunA17_Chr1g0193081 86.486 74 10 0 2 75 239 312 6.48e-42 140
Msa1253140 MtrunA17_Chr2g0277011 86.486 74 10 0 2 75 254 327 1.66e-41 139
Msa1253140 MtrunA17_Chr8g0350311 81.081 74 14 0 2 75 303 376 1.51e-40 137
Msa1253140 MtrunA17_Chr2g0320011 85.135 74 11 0 2 75 252 325 2.17e-40 136
Msa1253140 MtrunA17_Chr2g0284091 79.730 74 15 0 2 75 204 277 6.49e-40 134
Msa1253140 MtrunA17_Chr7g0273601 50.000 72 35 1 3 73 272 343 1.08e-18 78.2
Msa1253140 MtrunA17_Chr5g0396361 49.153 59 30 0 3 61 305 363 1.90e-18 77.4
Msa1253140 MtrunA17_Chr4g0066691 52.542 59 28 0 3 61 269 327 3.07e-18 77.0
Msa1253140 MtrunA17_Chr4g0045841 41.667 72 42 0 2 73 219 290 4.13e-18 76.3
Msa1253140 MtrunA17_Chr4g0030241 40.789 76 44 1 2 76 65 140 4.81e-18 73.6
Msa1253140 MtrunA17_Chr1g0191221 48.611 72 36 1 3 73 287 358 4.82e-18 76.3
Msa1253140 MtrunA17_Chr2g0286421 50.847 59 29 0 3 61 267 325 9.96e-18 75.5
Msa1253140 MtrunA17_Chr4g0002001 50.000 60 30 0 3 62 185 244 1.18e-17 74.7
Msa1253140 MtrunA17_Chr4g0051261 45.763 59 32 0 3 61 168 226 1.38e-17 74.3
Msa1253140 MtrunA17_Chr8g0385971 47.222 72 37 1 3 73 255 326 1.63e-17 75.1
Msa1253140 MtrunA17_Chr8g0377071 53.571 56 26 0 3 58 549 604 1.82e-17 74.7
Msa1253140 MtrunA17_Chr2g0293491 45.763 59 32 0 3 61 168 226 2.59e-17 73.6
Msa1253140 MtrunA17_Chr3g0122781 53.571 56 26 0 3 58 580 635 2.85e-17 74.3
Msa1253140 MtrunA17_Chr4g0030231 46.774 62 33 0 2 63 204 265 4.77e-17 73.2
Msa1253140 MtrunA17_Chr3g0131861 52.542 59 28 0 3 61 262 320 5.83e-17 73.2
Msa1253140 MtrunA17_Chr2g0317501 47.458 59 31 0 3 61 299 357 9.98e-17 72.8
Msa1253140 MtrunA17_Chr8g0359091 50.667 75 33 3 2 73 194 267 1.19e-16 72.4
Msa1253140 MtrunA17_Chr7g0248461 50.877 57 28 0 2 58 202 258 1.40e-16 72.0
Msa1253140 MtrunA17_Chr4g0040141 45.763 59 32 0 3 61 294 352 1.69e-16 72.0
Msa1253140 MtrunA17_Chr6g0486031 43.421 76 41 2 2 75 278 353 1.70e-16 72.0
Msa1253140 MtrunA17_Chr8g0348481 50.877 57 28 0 2 58 201 257 2.32e-16 71.2
Msa1253140 MtrunA17_Chr8g0383451 42.188 64 37 0 3 66 163 226 2.56e-16 71.6
Msa1253140 MtrunA17_Chr8g0378831 42.254 71 41 0 2 72 197 267 2.62e-16 71.2
Msa1253140 MtrunA17_Chr4g0057791 50.000 56 28 0 3 58 384 439 3.63e-16 71.2
Msa1253140 MtrunA17_Chr8g0387401 47.368 57 30 0 2 58 216 272 3.71e-16 70.9
Msa1253140 MtrunA17_Chr1g0201571 47.458 59 31 0 3 61 291 349 3.84e-16 70.9
Msa1253140 MtrunA17_Chr4g0030151 41.096 73 42 1 2 73 203 275 4.48e-16 70.5
Msa1253140 MtrunA17_Chr2g0324461 45.614 57 31 0 3 59 306 362 5.38e-16 70.5
Msa1253140 MtrunA17_Chr5g0443351 48.000 75 35 3 2 73 190 263 5.43e-16 70.5
Msa1253140 MtrunA17_Chr3g0141871 43.836 73 40 1 2 73 197 269 8.49e-16 69.7
Msa1253140 MtrunA17_Chr1g0187371 45.763 59 32 0 3 61 190 248 1.07e-15 69.3
Msa1253140 MtrunA17_Chr6g0453711 47.458 59 31 0 3 61 275 333 1.19e-15 69.7
Msa1253140 MtrunA17_Chr6g0483151 38.961 77 45 1 2 76 175 251 1.21e-15 69.7
Msa1253140 MtrunA17_Chr5g0397261 38.028 71 44 0 2 72 205 275 1.35e-15 69.3
Msa1253140 MtrunA17_Chr8g0390341 50.909 55 27 0 2 56 291 345 1.94e-15 68.9
Msa1253140 MtrunA17_Chr6g0482681 48.000 75 35 3 2 73 257 330 2.52e-15 68.6
Msa1253140 MtrunA17_Chr4g0061141 45.763 59 32 0 3 61 270 328 3.05e-15 68.6
Msa1253140 MtrunA17_Chr7g0218071 44.068 59 33 0 3 61 285 343 3.40e-15 68.2
Msa1253140 MtrunA17_Chr8g0358921 46.667 60 32 0 2 61 215 274 4.97e-15 67.8
Msa1253140 MtrunA17_Chr4g0065851 48.000 75 35 3 2 73 193 266 7.72e-15 67.4
Msa1253140 MtrunA17_Chr8g0369241 52.727 55 25 1 2 56 306 359 1.46e-14 66.6
Msa1253140 MtrunA17_Chr8g0392811 46.667 75 36 3 2 73 285 358 1.58e-14 66.2
Msa1253140 MtrunA17_Chr3g0102571 41.791 67 39 0 2 68 245 311 2.07e-14 65.9
Msa1253140 MtrunA17_Chr3g0096631 45.333 75 37 3 2 73 193 266 2.43e-14 65.9
Msa1253140 MtrunA17_Chr2g0287271 46.667 75 36 3 2 73 193 266 2.47e-14 65.9
Msa1253140 MtrunA17_Chr3g0130781 45.588 68 29 1 3 62 195 262 3.36e-14 65.5
Msa1253140 MtrunA17_Chr3g0093391 44.643 56 31 0 3 58 202 257 1.08e-13 63.9
Msa1253140 MtrunA17_Chr3g0093571 44.643 56 31 0 3 58 204 259 2.18e-13 63.2
Msa1253140 MtrunA17_Chr8g0339221 43.860 57 32 0 2 58 162 218 3.34e-13 62.8
Msa1253140 MtrunA17_Chr8g0369451 40.000 60 36 0 2 61 162 221 3.81e-13 62.4
Msa1253140 MtrunA17_Chr3g0099951 41.379 58 34 0 2 59 177 234 9.51e-13 61.2
Msa1253140 MtrunA17_Chr2g0314321 58.333 48 20 0 16 63 225 272 3.85e-12 59.7
Msa1253140 MtrunA17_Chr5g0409421 38.333 60 37 0 2 61 162 221 1.51e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1253140 AT3G05840.2 87.838 74 9 0 2 75 237 310 1.42e-43 145
Msa1253140 AT3G05840.1 87.838 74 9 0 2 75 237 310 1.42e-43 145
Msa1253140 AT5G14640.1 89.189 74 8 0 2 75 238 311 6.16e-43 143
Msa1253140 AT5G14640.2 89.189 74 8 0 2 75 238 311 6.16e-43 143
Msa1253140 AT1G57870.1 86.486 74 10 0 2 75 246 319 9.09e-43 143
Msa1253140 AT1G57870.4 86.486 74 10 0 2 75 246 319 9.09e-43 143
Msa1253140 AT1G57870.2 86.486 74 10 0 2 75 246 319 9.09e-43 143
Msa1253140 AT1G09840.3 85.135 74 11 0 2 75 247 320 1.23e-42 142
Msa1253140 AT1G09840.7 85.135 74 11 0 2 75 247 320 1.23e-42 142
Msa1253140 AT1G09840.10 85.135 74 11 0 2 75 247 320 1.23e-42 142
Msa1253140 AT1G09840.6 85.135 74 11 0 2 75 247 320 1.23e-42 142
Msa1253140 AT1G09840.4 85.135 74 11 0 2 75 247 320 1.23e-42 142
Msa1253140 AT1G09840.1 85.135 74 11 0 2 75 247 320 1.23e-42 142
Msa1253140 AT1G09840.9 85.135 74 11 0 2 75 247 320 1.23e-42 142
Msa1253140 AT1G09840.5 85.135 74 11 0 2 75 247 320 1.23e-42 142
Msa1253140 AT1G09840.8 85.135 74 11 0 2 75 247 320 1.23e-42 142
Msa1253140 AT1G09840.2 85.135 74 11 0 2 75 247 320 1.23e-42 142
Msa1253140 AT1G09840.11 85.135 74 11 0 2 75 120 193 1.43e-42 139
Msa1253140 AT5G26751.1 87.838 74 9 0 2 75 233 306 1.87e-42 142
Msa1253140 AT1G57870.3 86.486 74 10 0 2 75 246 319 2.33e-41 140
Msa1253140 AT4G00720.1 79.730 74 15 0 2 75 302 375 2.70e-41 140
Msa1253140 AT4G18710.1 82.432 74 13 0 2 75 204 277 6.87e-41 137
Msa1253140 AT1G06390.2 83.784 74 12 0 2 75 234 307 1.51e-40 137
Msa1253140 AT1G06390.1 83.784 74 12 0 2 75 234 307 1.51e-40 137
Msa1253140 AT2G30980.1 83.784 74 12 0 2 75 236 309 2.36e-40 136
Msa1253140 AT4G18710.2 83.099 71 12 0 2 72 198 268 2.06e-38 128
Msa1253140 AT3G61160.5 71.622 74 21 0 2 75 266 339 1.17e-35 124
Msa1253140 AT3G61160.2 71.622 74 21 0 2 75 273 346 1.79e-35 124
Msa1253140 AT3G61160.1 71.622 74 21 0 2 75 266 339 2.10e-35 124
Msa1253140 AT3G61160.4 71.622 74 21 0 2 75 266 339 2.74e-35 123
Msa1253140 AT3G61160.3 71.622 74 21 0 2 75 266 339 3.52e-35 122
Msa1253140 AT3G61160.6 71.622 74 21 0 2 75 273 346 4.65e-35 122
Msa1253140 AT2G38620.4 50.000 60 30 0 3 62 123 182 3.25e-19 78.2
Msa1253140 AT2G38620.2 50.000 60 30 0 3 62 185 244 8.16e-19 78.2
Msa1253140 AT1G73690.1 41.026 78 42 2 2 76 172 248 9.75e-19 78.6
Msa1253140 AT5G63370.5 56.140 57 25 0 2 58 465 521 1.16e-18 78.6
Msa1253140 AT5G63370.10 56.140 57 25 0 2 58 465 521 1.16e-18 78.6
Msa1253140 AT5G63370.7 56.140 57 25 0 2 58 465 521 1.25e-18 78.6
Msa1253140 AT5G63370.8 56.140 57 25 0 2 58 465 521 1.25e-18 78.6
Msa1253140 AT5G63370.4 56.140 57 25 0 2 58 465 521 1.25e-18 78.6
Msa1253140 AT5G63370.6 56.140 57 25 0 2 58 465 521 1.25e-18 78.6
Msa1253140 AT5G63370.1 56.140 57 25 0 2 58 465 521 1.25e-18 78.6
Msa1253140 AT2G46070.2 45.070 71 39 0 2 72 205 275 1.76e-18 77.4
Msa1253140 AT2G46070.3 45.070 71 39 0 2 72 239 309 1.93e-18 77.8
Msa1253140 AT5G63370.9 56.140 57 25 0 2 58 331 387 2.47e-18 77.4
Msa1253140 AT5G63370.2 56.140 57 25 0 2 58 331 387 2.55e-18 77.4
Msa1253140 AT5G63370.3 56.140 57 25 0 2 58 331 387 2.55e-18 77.4
Msa1253140 AT2G46070.1 45.070 71 39 0 2 72 205 275 2.91e-18 77.0
Msa1253140 AT3G48750.1 50.000 56 28 0 3 58 168 223 3.79e-18 76.3
Msa1253140 AT3G59790.1 41.667 72 42 0 2 73 224 295 4.63e-18 76.6
Msa1253140 AT1G54610.1 52.542 59 28 0 3 61 283 341 5.63e-18 76.6
Msa1253140 AT1G54610.3 52.542 59 28 0 3 61 283 341 5.63e-18 76.6
Msa1253140 AT1G54610.2 52.542 59 28 0 3 61 283 341 5.63e-18 76.6
Msa1253140 AT1G67580.1 53.571 56 26 0 3 58 570 625 9.74e-18 75.9
Msa1253140 AT1G67580.2 53.571 56 26 0 3 58 570 625 9.74e-18 75.9
Msa1253140 AT1G71530.1 50.847 59 29 0 3 61 312 370 1.62e-17 75.5
Msa1253140 AT1G71530.3 50.847 59 29 0 3 61 312 370 1.74e-17 75.1
Msa1253140 AT3G54180.1 48.333 60 31 0 3 62 183 242 2.46e-17 73.9
Msa1253140 AT1G71530.2 50.847 59 29 0 3 61 312 370 2.64e-17 74.7
Msa1253140 AT1G76540.1 49.153 59 30 0 3 61 186 244 2.84e-17 73.9
Msa1253140 AT1G53050.2 49.153 59 30 0 3 61 299 357 3.04e-17 74.7
Msa1253140 AT1G53050.1 49.153 59 30 0 3 61 299 357 3.04e-17 74.7
Msa1253140 AT1G01560.3 38.824 85 41 1 2 75 204 288 4.35e-17 73.6
Msa1253140 AT1G66750.1 41.333 75 42 1 3 75 175 249 4.49e-17 73.6
Msa1253140 AT1G18040.1 37.662 77 46 1 2 76 173 249 5.15e-17 73.6
Msa1253140 AT4G10010.1 52.632 57 27 0 3 59 141 197 5.58e-17 73.9
Msa1253140 AT4G10010.2 52.632 57 27 0 3 59 321 377 6.55e-17 73.6
Msa1253140 AT1G57700.1 45.763 59 32 0 3 61 311 369 6.82e-17 73.6
Msa1253140 AT1G20930.1 49.153 59 30 0 3 61 188 246 8.08e-17 72.8
Msa1253140 AT1G09600.1 45.763 59 32 0 3 61 328 386 8.63e-17 73.2
Msa1253140 AT5G50860.1 50.877 57 28 0 3 59 279 335 8.90e-17 73.2
Msa1253140 AT5G50860.2 50.877 57 28 0 3 59 279 335 9.38e-17 73.2
Msa1253140 AT1G33770.1 47.458 59 31 0 3 61 306 364 1.01e-16 73.2
Msa1253140 AT1G01560.2 38.824 85 41 1 2 75 204 288 1.25e-16 72.4
Msa1253140 AT1G03740.2 49.123 57 29 0 3 59 378 434 1.56e-16 72.4
Msa1253140 AT1G03740.1 49.123 57 29 0 3 59 378 434 1.57e-16 72.4
Msa1253140 AT4G01370.1 38.824 85 41 1 2 75 207 291 2.95e-16 71.6
Msa1253140 AT1G18670.2 47.458 59 31 0 3 61 297 355 7.57e-16 70.5
Msa1253140 AT1G18670.1 47.458 59 31 0 3 61 297 355 7.59e-16 70.5
Msa1253140 AT1G18670.3 47.458 59 31 0 3 61 297 355 7.59e-16 70.5
Msa1253140 AT1G73670.1 49.333 75 34 3 2 73 258 331 8.05e-16 70.5
Msa1253140 AT3G05050.3 47.458 59 31 0 3 61 303 361 8.72e-16 70.5
Msa1253140 AT3G05050.2 47.458 59 31 0 3 61 303 361 8.72e-16 70.5
Msa1253140 AT3G05050.1 47.458 59 31 0 3 61 303 361 8.72e-16 70.5
Msa1253140 AT1G74330.3 47.458 59 31 0 3 61 288 346 1.13e-15 70.1
Msa1253140 AT1G74330.2 47.458 59 31 0 3 61 288 346 1.13e-15 70.1
Msa1253140 AT1G74330.1 47.458 59 31 0 3 61 288 346 1.13e-15 70.1
Msa1253140 AT3G45640.1 41.096 73 42 1 2 73 202 274 1.21e-15 69.7
Msa1253140 AT1G18150.3 48.000 75 35 3 2 73 272 345 1.35e-15 69.7
Msa1253140 AT1G18150.2 48.000 75 35 3 2 73 272 345 1.35e-15 69.7
Msa1253140 AT1G18150.1 48.000 75 35 3 2 73 272 345 1.35e-15 69.7
Msa1253140 AT4G11330.1 45.614 57 31 0 2 58 207 263 1.73e-15 69.3
Msa1253140 AT4G22940.1 47.368 57 30 0 3 59 269 325 2.19e-15 69.3
Msa1253140 AT3G01085.1 45.763 59 32 0 3 61 280 338 2.43e-15 69.3
Msa1253140 AT3G01085.2 45.763 59 32 0 3 61 280 338 2.43e-15 69.3
Msa1253140 AT3G01085.3 45.763 59 32 0 3 61 280 338 2.43e-15 69.3
Msa1253140 AT3G14720.2 53.125 64 27 2 2 63 193 255 2.46e-15 68.9
Msa1253140 AT3G14720.3 53.125 64 27 2 2 63 193 255 2.46e-15 68.9
Msa1253140 AT5G19010.1 48.000 75 35 3 2 73 193 266 3.12e-15 68.9
Msa1253140 AT4G22940.2 47.368 57 30 0 3 59 269 325 3.68e-15 68.6
Msa1253140 AT1G01560.4 52.830 53 25 0 2 54 204 256 3.89e-15 67.8
Msa1253140 AT1G01560.1 52.830 53 25 0 2 54 204 256 3.89e-15 67.8
Msa1253140 AT2G42880.2 45.333 75 37 3 2 73 193 266 4.04e-15 68.6
Msa1253140 AT2G42880.1 45.333 75 37 3 2 73 193 266 5.05e-15 68.2
Msa1253140 AT2G38620.3 49.057 53 27 0 3 55 185 237 5.27e-15 67.4
Msa1253140 AT2G38620.1 49.057 53 27 0 3 55 185 237 5.27e-15 67.4
Msa1253140 AT1G53510.1 46.575 73 36 2 2 72 193 264 6.26e-15 67.8
Msa1253140 AT3G14720.1 53.125 64 27 2 2 63 193 255 6.57e-15 67.8
Msa1253140 AT5G44290.2 45.763 59 32 0 3 61 302 360 6.59e-15 67.8
Msa1253140 AT5G44290.5 45.763 59 32 0 3 61 302 360 6.59e-15 67.8
Msa1253140 AT5G44290.4 45.763 59 32 0 3 61 302 360 6.59e-15 67.8
Msa1253140 AT5G44290.1 45.763 59 32 0 3 61 302 360 6.59e-15 67.8
Msa1253140 AT5G44290.3 45.763 59 32 0 3 61 302 360 6.59e-15 67.8
Msa1253140 AT5G44290.6 45.763 59 32 0 3 61 302 360 6.84e-15 67.8
Msa1253140 AT5G39420.1 44.643 56 31 0 3 58 270 325 8.33e-15 67.8
Msa1253140 AT3G18040.4 46.667 75 36 3 2 73 300 373 9.07e-15 67.4
Msa1253140 AT3G18040.3 46.667 75 36 3 2 73 300 373 9.18e-15 67.4
Msa1253140 AT5G44290.7 45.763 59 32 0 3 61 302 360 9.80e-15 67.4
Msa1253140 AT1G59580.2 41.096 73 42 1 2 73 197 269 1.02e-14 67.4
Msa1253140 AT1G59580.1 41.096 73 42 1 2 73 197 269 1.02e-14 67.4
Msa1253140 AT1G07880.2 40.845 71 42 0 2 72 197 267 1.27e-14 67.0
Msa1253140 AT2G43790.1 44.828 58 32 0 2 59 227 284 1.52e-14 66.6
Msa1253140 AT5G35980.1 54.545 55 24 1 2 56 288 341 1.84e-14 66.6
Msa1253140 AT3G18040.5 46.667 75 36 3 2 73 186 259 2.00e-14 66.6
Msa1253140 AT3G18040.1 46.667 75 36 3 2 73 191 264 2.00e-14 66.6
Msa1253140 AT5G35980.3 54.545 55 24 1 2 56 253 306 2.07e-14 66.6
Msa1253140 AT5G35980.2 54.545 55 24 1 2 56 288 341 2.18e-14 66.6
Msa1253140 AT3G18040.2 46.667 75 36 3 2 73 103 176 2.90e-14 65.9
Msa1253140 AT4G13020.4 49.123 57 29 0 2 58 162 218 5.11e-14 65.5
Msa1253140 AT4G13020.8 49.123 57 29 0 2 58 171 227 5.22e-14 65.1
Msa1253140 AT4G13020.7 49.123 57 29 0 2 58 162 218 5.85e-14 65.1
Msa1253140 AT4G13020.6 49.123 57 29 0 2 58 162 218 6.07e-14 65.1
Msa1253140 AT4G13020.2 49.123 57 29 0 2 58 170 226 6.74e-14 65.1
Msa1253140 AT4G13020.3 49.123 57 29 0 2 58 170 226 6.74e-14 65.1
Msa1253140 AT4G13020.5 49.123 57 29 0 2 58 171 227 6.74e-14 65.1
Msa1253140 AT2G18170.1 39.726 73 43 1 2 73 197 269 7.28e-14 64.7
Msa1253140 AT4G13020.1 49.123 57 29 0 2 58 162 218 7.41e-14 64.7
Msa1253140 AT4G28980.3 45.000 60 33 0 2 61 296 355 7.88e-14 64.7
Msa1253140 AT4G28980.1 45.000 60 33 0 2 61 296 355 7.88e-14 64.7
Msa1253140 AT4G28980.2 45.000 60 33 0 2 61 296 355 7.88e-14 64.7
Msa1253140 AT1G10210.2 39.726 73 43 1 2 73 197 269 7.91e-14 64.7
Msa1253140 AT1G10210.3 39.726 73 43 1 2 73 197 269 7.91e-14 64.7
Msa1253140 AT1G10210.1 39.726 73 43 1 2 73 197 269 7.91e-14 64.7
Msa1253140 AT2G01450.3 48.333 60 28 2 2 59 184 242 8.20e-14 64.7
Msa1253140 AT2G01450.1 48.333 60 28 2 2 59 184 242 8.20e-14 64.7
Msa1253140 AT2G01450.2 48.333 60 28 2 2 59 184 242 8.20e-14 64.7
Msa1253140 AT2G01450.4 48.333 60 28 2 2 59 184 242 8.20e-14 64.7
Msa1253140 AT4G19110.2 43.333 60 34 0 2 61 162 221 9.83e-14 64.7
Msa1253140 AT4G19110.1 43.333 60 34 0 2 61 162 221 1.18e-13 64.3
Msa1253140 AT4G19110.3 43.333 60 34 0 2 61 106 165 1.70e-13 63.9
Msa1253140 AT5G63610.1 41.176 68 32 1 3 62 200 267 2.05e-13 63.5
Msa1253140 AT5G45430.1 43.333 60 34 0 2 61 162 221 2.22e-13 63.5
Msa1253140 AT5G45430.2 43.333 60 34 0 2 61 162 221 2.38e-13 63.5
Msa1253140 AT5G64960.1 46.429 56 30 0 3 58 205 260 2.81e-13 63.2
Msa1253140 AT5G64960.2 46.429 56 30 0 3 58 152 207 3.08e-13 63.2
Msa1253140 AT1G71530.4 58.140 43 18 0 3 45 312 354 6.06e-13 62.4
Msa1253140 AT5G10270.1 44.643 56 31 0 3 58 205 260 8.07e-13 62.0
Msa1253140 AT4G36450.1 44.643 56 31 0 2 57 194 249 2.48e-12 60.5
Msa1253140 AT1G07880.1 49.057 53 27 0 2 54 197 249 3.61e-12 59.7
Msa1253140 AT4G01595.1 45.614 57 31 0 16 72 20 76 8.42e-12 57.0

Find 25 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTTGATTTCTTCCCTTGT+TGG 0.201375 8_2:+50409749 None:intergenic
TAATTATACCTAGTATAATT+AGG 0.273993 8_2:+50409719 None:intergenic
TCTTATCAGCCACTGTTTCC+TGG 0.308862 8_2:-50409975 Msa1253140:intron
TAAACTTGGGAAATCTTTGT+AGG 0.332114 8_2:-50409692 Msa1253140:three_prime_UTR
AAGTCGTATCGAAGAATATA+TGG 0.350780 8_2:-50409593 Msa1253140:three_prime_UTR
TGGTCAGCTGGTTGCGTACT+TGG 0.374738 8_2:-50410095 Msa1253140:CDS
TTTGTTGTATCCTAACGAAT+AGG 0.383838 8_2:-50409466 Msa1253140:three_prime_UTR
ATTCAATCATAGCTCAGTTA+TGG 0.423401 8_2:+50409537 None:intergenic
TACTCAGTTGCACCGAATAT+AGG 0.447929 8_2:+50410137 None:intergenic
CCTTGATAATTTCCACAAGT+TGG 0.452229 8_2:+50409937 None:intergenic
GGTATAATTATATATAAACT+TGG 0.457115 8_2:-50409706 Msa1253140:exon
AAATCTTTGTAGGTTAATCA+AGG 0.473313 8_2:-50409682 Msa1253140:three_prime_UTR
AGAGCTCCTGAGCCTATATT+CGG 0.474591 8_2:-50410149 Msa1253140:CDS
GTCATTGACATCTGGTCAGC+TGG 0.482850 8_2:-50410107 Msa1253140:CDS
CCACTGTTTCCTGGTGAGAG+TGG 0.506242 8_2:-50409966 Msa1253140:CDS
TGACTACACTCCTATTCGTT+AGG 0.509378 8_2:+50409456 None:intergenic
CCAACTTGTGGAAATTATCA+AGG 0.511188 8_2:-50409937 Msa1253140:intron
ACACCACAGTCATTGACATC+TGG 0.524089 8_2:-50410115 Msa1253140:CDS
GCATGAATCCTAATTATACT+AGG 0.531370 8_2:-50409727 Msa1253140:CDS
GTTGCACCGAATATAGGCTC+AGG 0.565527 8_2:+50410143 None:intergenic
GTATAATTATATATAAACTT+GGG 0.575715 8_2:-50409705 Msa1253140:exon
TGGTCTACTCCACTCTCACC+AGG 0.583110 8_2:+50409957 None:intergenic
CCACTCTCACCAGGAAACAG+TGG 0.653830 8_2:+50409966 None:intergenic
GAGTGGAGTAGACCAACTTG+TGG 0.666033 8_2:-50409949 Msa1253140:CDS
TGACCAGATGTCAATGACTG+TGG 0.757242 8_2:+50410112 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTATAATTATATATAAACTT+GGG - chr8_2:50410451-50410470 Msa1253140:intron 10.0%
!! GTATAATTATATATAAACTT+GGG - chr8_2:50410451-50410470 Msa1253140:intron 10.0%
!!! TATTTTTAGTTCAGTTAATT+CGG - chr8_2:50410348-50410367 Msa1253140:intron 15.0%
!! TAATTATACCTAGTATAATT+AGG + chr8_2:50410440-50410459 None:intergenic 15.0%
!! GGTATAATTATATATAAACT+TGG - chr8_2:50410450-50410469 Msa1253140:intron 15.0%
!!! TATTTTTAGTTCAGTTAATT+CGG - chr8_2:50410348-50410367 Msa1253140:intron 15.0%
!! TAATTATACCTAGTATAATT+AGG + chr8_2:50410440-50410459 None:intergenic 15.0%
!! GGTATAATTATATATAAACT+TGG - chr8_2:50410450-50410469 Msa1253140:intron 15.0%
!!! ATGTTTTAGCATTTACAAAT+TGG - chr8_2:50409660-50409679 Msa1253140:three_prime_UTR 20.0%
!! TGAAATGATCTAATAAAACA+TGG + chr8_2:50409744-50409763 None:intergenic 20.0%
!!! TTTTGATGTTGTATAAAAAC+AGG - chr8_2:50409805-50409824 Msa1253140:intron 20.0%
!! TATAAAGACTAAATGCTATA+TGG - chr8_2:50409931-50409950 Msa1253140:intron 20.0%
!! AAACGAAACAAAAATATGAA+AGG + chr8_2:50410323-50410342 None:intergenic 20.0%
!!! ATGTTTTAGCATTTACAAAT+TGG - chr8_2:50409660-50409679 Msa1253140:three_prime_UTR 20.0%
!! TGAAATGATCTAATAAAACA+TGG + chr8_2:50409744-50409763 None:intergenic 20.0%
!!! TTTTGATGTTGTATAAAAAC+AGG - chr8_2:50409805-50409824 Msa1253140:intron 20.0%
!! TATAAAGACTAAATGCTATA+TGG - chr8_2:50409931-50409950 Msa1253140:intron 20.0%
!! AAACGAAACAAAAATATGAA+AGG + chr8_2:50410323-50410342 None:intergenic 20.0%
! TTTGCACTTTATTCTGTAAA+TGG - chr8_2:50409488-50409507 Msa1253140:three_prime_UTR 25.0%
! TTGCACTTTATTCTGTAAAT+GGG - chr8_2:50409489-50409508 Msa1253140:three_prime_UTR 25.0%
!!! AATATAGCTTTTCTGAAGTA+TGG + chr8_2:50409524-50409543 None:intergenic 25.0%
!! AGAATGGAGATAGTAATTTT+TGG - chr8_2:50409774-50409793 Msa1253140:intron 25.0%
!!! TAAATGCTATATGGTTTTAC+AGG - chr8_2:50409940-50409959 Msa1253140:CDS 25.0%
! GAACAAATGTAAGATATGTT+TGG + chr8_2:50409977-50409996 None:intergenic 25.0%
! ACATATCTTACATTTGTTCT+AGG - chr8_2:50409978-50409997 Msa1253140:intron 25.0%
! AAATCTTTGTAGGTTAATCA+AGG - chr8_2:50410474-50410493 Msa1253140:intron 25.0%
! TTTGCACTTTATTCTGTAAA+TGG - chr8_2:50409488-50409507 Msa1253140:three_prime_UTR 25.0%
! TTGCACTTTATTCTGTAAAT+GGG - chr8_2:50409489-50409508 Msa1253140:three_prime_UTR 25.0%
!!! AATATAGCTTTTCTGAAGTA+TGG + chr8_2:50409524-50409543 None:intergenic 25.0%
!! AGAATGGAGATAGTAATTTT+TGG - chr8_2:50409774-50409793 Msa1253140:intron 25.0%
!!! TAAATGCTATATGGTTTTAC+AGG - chr8_2:50409940-50409959 Msa1253140:CDS 25.0%
! GAACAAATGTAAGATATGTT+TGG + chr8_2:50409977-50409996 None:intergenic 25.0%
! ACATATCTTACATTTGTTCT+AGG - chr8_2:50409978-50409997 Msa1253140:intron 25.0%
! AAATCTTTGTAGGTTAATCA+AGG - chr8_2:50410474-50410493 Msa1253140:intron 25.0%
AAATTGTGCATGTCACAAAT+CGG + chr8_2:50409558-50409577 None:intergenic 30.0%
TGTTATGATTTCTACCAGAA+AGG - chr8_2:50409611-50409630 Msa1253140:three_prime_UTR 30.0%
! CATTTCTCAATTTTCCTTTC+TGG + chr8_2:50409628-50409647 None:intergenic 30.0%
ATTTCACTTTCCTAACAGAA+TGG - chr8_2:50409758-50409777 Msa1253140:CDS 30.0%
ATTACTATCTCCATTCTGTT+AGG + chr8_2:50409771-50409790 None:intergenic 30.0%
AAACTAACGAAAGGATTTCA+AGG + chr8_2:50409891-50409910 None:intergenic 30.0%
GTTATTGCAAAACTAACGAA+AGG + chr8_2:50409900-50409919 None:intergenic 30.0%
GCATGAATCCTAATTATACT+AGG - chr8_2:50410429-50410448 Msa1253140:intron 30.0%
TAAACTTGGGAAATCTTTGT+AGG - chr8_2:50410464-50410483 Msa1253140:intron 30.0%
AAGTCGTATCGAAGAATATA+TGG - chr8_2:50410563-50410582 Msa1253140:intron 30.0%
ATTCAATCATAGCTCAGTTA+TGG + chr8_2:50410622-50410641 None:intergenic 30.0%
! ACAAAAATGGCACTCTAAAA+CGG + chr8_2:50410675-50410694 None:intergenic 30.0%
TCGTTAGGATACAACAAAAA+TGG + chr8_2:50410688-50410707 None:intergenic 30.0%
! TTTGTTGTATCCTAACGAAT+AGG - chr8_2:50410690-50410709 Msa1253140:intron 30.0%
AAATTGTGCATGTCACAAAT+CGG + chr8_2:50409558-50409577 None:intergenic 30.0%
TGTTATGATTTCTACCAGAA+AGG - chr8_2:50409611-50409630 Msa1253140:three_prime_UTR 30.0%
! CATTTCTCAATTTTCCTTTC+TGG + chr8_2:50409628-50409647 None:intergenic 30.0%
ATTTCACTTTCCTAACAGAA+TGG - chr8_2:50409758-50409777 Msa1253140:CDS 30.0%
ATTACTATCTCCATTCTGTT+AGG + chr8_2:50409771-50409790 None:intergenic 30.0%
AAACTAACGAAAGGATTTCA+AGG + chr8_2:50409891-50409910 None:intergenic 30.0%
GTTATTGCAAAACTAACGAA+AGG + chr8_2:50409900-50409919 None:intergenic 30.0%
GCATGAATCCTAATTATACT+AGG - chr8_2:50410429-50410448 Msa1253140:intron 30.0%
TAAACTTGGGAAATCTTTGT+AGG - chr8_2:50410464-50410483 Msa1253140:intron 30.0%
AAGTCGTATCGAAGAATATA+TGG - chr8_2:50410563-50410582 Msa1253140:intron 30.0%
ATTCAATCATAGCTCAGTTA+TGG + chr8_2:50410622-50410641 None:intergenic 30.0%
! ACAAAAATGGCACTCTAAAA+CGG + chr8_2:50410675-50410694 None:intergenic 30.0%
TCGTTAGGATACAACAAAAA+TGG + chr8_2:50410688-50410707 None:intergenic 30.0%
! TTTGTTGTATCCTAACGAAT+AGG - chr8_2:50410690-50410709 Msa1253140:intron 30.0%
GTGACATGCACAATTTGAAT+TGG - chr8_2:50409562-50409581 Msa1253140:three_prime_UTR 35.0%
!! GTGCATTCGTTGATTTATGT+GGG - chr8_2:50409685-50409704 Msa1253140:three_prime_UTR 35.0%
!! TGCATTCGTTGATTTATGTG+GGG - chr8_2:50409686-50409705 Msa1253140:three_prime_UTR 35.0%
TAAAGTCGCATATCTTCAGT+TGG + chr8_2:50409847-50409866 None:intergenic 35.0%
AAGATATGCGACTTTAGTCT+TGG - chr8_2:50409851-50409870 Msa1253140:intron 35.0%
! CCTTGATAATTTCCACAAGT+TGG + chr8_2:50410222-50410241 None:intergenic 35.0%
CCAACTTGTGGAAATTATCA+AGG - chr8_2:50410219-50410238 Msa1253140:intron 35.0%
ATATGTTCAAGCTAGTAGCA+AGG + chr8_2:50410287-50410306 None:intergenic 35.0%
GTTAATTCGGAAGTTTCATG+TGG - chr8_2:50410361-50410380 Msa1253140:intron 35.0%
GTGACATGCACAATTTGAAT+TGG - chr8_2:50409562-50409581 Msa1253140:three_prime_UTR 35.0%
!! GTGCATTCGTTGATTTATGT+GGG - chr8_2:50409685-50409704 Msa1253140:three_prime_UTR 35.0%
!! TGCATTCGTTGATTTATGTG+GGG - chr8_2:50409686-50409705 Msa1253140:three_prime_UTR 35.0%
TAAAGTCGCATATCTTCAGT+TGG + chr8_2:50409847-50409866 None:intergenic 35.0%
AAGATATGCGACTTTAGTCT+TGG - chr8_2:50409851-50409870 Msa1253140:intron 35.0%
! CCTTGATAATTTCCACAAGT+TGG + chr8_2:50410222-50410241 None:intergenic 35.0%
CCAACTTGTGGAAATTATCA+AGG - chr8_2:50410219-50410238 Msa1253140:intron 35.0%
ATATGTTCAAGCTAGTAGCA+AGG + chr8_2:50410287-50410306 None:intergenic 35.0%
GTTAATTCGGAAGTTTCATG+TGG - chr8_2:50410361-50410380 Msa1253140:intron 35.0%
!!! CTTTTCTGAAGTATGGATGC+AGG + chr8_2:50409517-50409536 None:intergenic 40.0%
!! CGTGCATTCGTTGATTTATG+TGG - chr8_2:50409684-50409703 Msa1253140:three_prime_UTR 40.0%
TACTCAGTTGCACCGAATAT+AGG + chr8_2:50410022-50410041 None:intergenic 40.0%
!! GTACTTGGTGAACTTTTGCT+TGG - chr8_2:50410076-50410095 Msa1253140:CDS 40.0%
ACACAATGAAGCTAGTTACC+TGG + chr8_2:50410102-50410121 None:intergenic 40.0%
CTAGCTTCATTGTGTATGCT+TGG - chr8_2:50410107-50410126 Msa1253140:CDS 40.0%
!!! AGGTTTTAGGTACTCCAACA+AGG - chr8_2:50410393-50410412 Msa1253140:intron 40.0%
!!! GGTTTTAGGTACTCCAACAA+GGG - chr8_2:50410394-50410413 Msa1253140:intron 40.0%
CACTTGATTTCTTCCCTTGT+TGG + chr8_2:50410410-50410429 None:intergenic 40.0%
TGACTACACTCCTATTCGTT+AGG + chr8_2:50410703-50410722 None:intergenic 40.0%
!!! CTTTTCTGAAGTATGGATGC+AGG + chr8_2:50409517-50409536 None:intergenic 40.0%
!! CGTGCATTCGTTGATTTATG+TGG - chr8_2:50409684-50409703 Msa1253140:three_prime_UTR 40.0%
TACTCAGTTGCACCGAATAT+AGG + chr8_2:50410022-50410041 None:intergenic 40.0%
!! GTACTTGGTGAACTTTTGCT+TGG - chr8_2:50410076-50410095 Msa1253140:CDS 40.0%
ACACAATGAAGCTAGTTACC+TGG + chr8_2:50410102-50410121 None:intergenic 40.0%
CTAGCTTCATTGTGTATGCT+TGG - chr8_2:50410107-50410126 Msa1253140:CDS 40.0%
!!! AGGTTTTAGGTACTCCAACA+AGG - chr8_2:50410393-50410412 Msa1253140:intron 40.0%
!!! GGTTTTAGGTACTCCAACAA+GGG - chr8_2:50410394-50410413 Msa1253140:intron 40.0%
CACTTGATTTCTTCCCTTGT+TGG + chr8_2:50410410-50410429 None:intergenic 40.0%
TGACTACACTCCTATTCGTT+AGG + chr8_2:50410703-50410722 None:intergenic 40.0%
GTCGCATATCTTCAGTTGGT+AGG + chr8_2:50409843-50409862 None:intergenic 45.0%
AGAGCTCCTGAGCCTATATT+CGG - chr8_2:50410007-50410026 Msa1253140:intron 45.0%
ACACCACAGTCATTGACATC+TGG - chr8_2:50410041-50410060 Msa1253140:intron 45.0%
TGACCAGATGTCAATGACTG+TGG + chr8_2:50410047-50410066 None:intergenic 45.0%
TCTTATCAGCCACTGTTTCC+TGG - chr8_2:50410181-50410200 Msa1253140:intron 45.0%
GTTTCATGTGGTTCACTTGC+AGG - chr8_2:50410373-50410392 Msa1253140:intron 45.0%
! GTGGTTCACTTGCAGGTTTT+AGG - chr8_2:50410380-50410399 Msa1253140:intron 45.0%
GTCGCATATCTTCAGTTGGT+AGG + chr8_2:50409843-50409862 None:intergenic 45.0%
AGAGCTCCTGAGCCTATATT+CGG - chr8_2:50410007-50410026 Msa1253140:intron 45.0%
ACACCACAGTCATTGACATC+TGG - chr8_2:50410041-50410060 Msa1253140:intron 45.0%
TGACCAGATGTCAATGACTG+TGG + chr8_2:50410047-50410066 None:intergenic 45.0%
TCTTATCAGCCACTGTTTCC+TGG - chr8_2:50410181-50410200 Msa1253140:intron 45.0%
GTTTCATGTGGTTCACTTGC+AGG - chr8_2:50410373-50410392 Msa1253140:intron 45.0%
! GTGGTTCACTTGCAGGTTTT+AGG - chr8_2:50410380-50410399 Msa1253140:intron 45.0%
GTTGCACCGAATATAGGCTC+AGG + chr8_2:50410016-50410035 None:intergenic 50.0%
GTCATTGACATCTGGTCAGC+TGG - chr8_2:50410049-50410068 Msa1253140:intron 50.0%
! TGGTGAACTTTTGCTTGGCC+AGG - chr8_2:50410081-50410100 Msa1253140:CDS 50.0%
GAGTGGAGTAGACCAACTTG+TGG - chr8_2:50410207-50410226 Msa1253140:intron 50.0%
GTTGCACCGAATATAGGCTC+AGG + chr8_2:50410016-50410035 None:intergenic 50.0%
GTCATTGACATCTGGTCAGC+TGG - chr8_2:50410049-50410068 Msa1253140:intron 50.0%
! TGGTGAACTTTTGCTTGGCC+AGG - chr8_2:50410081-50410100 Msa1253140:CDS 50.0%
GAGTGGAGTAGACCAACTTG+TGG - chr8_2:50410207-50410226 Msa1253140:intron 50.0%
TGGTCAGCTGGTTGCGTACT+TGG - chr8_2:50410061-50410080 Msa1253140:intron 55.0%
CCACTCTCACCAGGAAACAG+TGG + chr8_2:50410193-50410212 None:intergenic 55.0%
CCACTGTTTCCTGGTGAGAG+TGG - chr8_2:50410190-50410209 Msa1253140:intron 55.0%
TGGTCTACTCCACTCTCACC+AGG + chr8_2:50410202-50410221 None:intergenic 55.0%
TGGTCAGCTGGTTGCGTACT+TGG - chr8_2:50410061-50410080 Msa1253140:intron 55.0%
CCACTCTCACCAGGAAACAG+TGG + chr8_2:50410193-50410212 None:intergenic 55.0%
CCACTGTTTCCTGGTGAGAG+TGG - chr8_2:50410190-50410209 Msa1253140:intron 55.0%
TGGTCTACTCCACTCTCACC+AGG + chr8_2:50410202-50410221 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 50409452 50410726 50409452 ID=Msa1253140;Name=Msa1253140
chr8_2 mRNA 50409452 50410726 50409452 ID=Msa1253140-mRNA-1;Parent=Msa1253140;Name=Msa1253140-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0.66|0.5|0.75|1|1|4|260|76
chr8_2 exon 50409452 50409783 50409452 ID=Msa1253140-mRNA-1:exon:15367;Parent=Msa1253140-mRNA-1
chr8_2 exon 50409938 50409988 50409938 ID=Msa1253140-mRNA-1:exon:15366;Parent=Msa1253140-mRNA-1
chr8_2 exon 50410076 50410178 50410076 ID=Msa1253140-mRNA-1:exon:15365;Parent=Msa1253140-mRNA-1
chr8_2 exon 50410722 50410726 50410722 ID=Msa1253140-mRNA-1:exon:15364;Parent=Msa1253140-mRNA-1
chr8_2 CDS 50410722 50410726 50410722 ID=Msa1253140-mRNA-1:cds;Parent=Msa1253140-mRNA-1
chr8_2 CDS 50410076 50410178 50410076 ID=Msa1253140-mRNA-1:cds;Parent=Msa1253140-mRNA-1
chr8_2 CDS 50409938 50409988 50409938 ID=Msa1253140-mRNA-1:cds;Parent=Msa1253140-mRNA-1
chr8_2 CDS 50409712 50409783 50409712 ID=Msa1253140-mRNA-1:cds;Parent=Msa1253140-mRNA-1
chr8_2 three_prime_UTR 50409452 50409711 50409452 ID=Msa1253140-mRNA-1:three_prime_utr;Parent=Msa1253140-mRNA-1
Gene Sequence

>Msa1253140

ATGAAGTACTATAGAGCTCCTGAGCCTATATTCGGTGCAACTGAGTACACCACAGTCATTGACATCTGGTCAGCTGGTTGCGTACTTGGTGAACTTTTGCTTGGCCAGCCACTGTTTCCTGGTGAGAGTGGAGTAGACCAACTTGTGGAAATTATCAAGGTTTTAGGTACTCCAACAAGGGAAGAAATCAAGTGCATGAATCCTAATTATACTAGGTATAATTATATATAA
Protein sequence

>Msa1253140

MKYYRAPEPIFGATEYTTVIDIWSAGCVLGELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTRYNYI*