AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1253490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1253490 MtrunA17_Chr8g0369971 88.846 260 24 2 1 255 356 615 1.87e-165 471
Msa1253490 MtrunA17_Chr8g0370241 60.410 293 76 8 2 255 408 699 4.63e-108 330
Msa1253490 MtrunA17_Chr5g0407261 53.979 289 96 7 3 255 469 756 3.15e-94 295
Msa1253490 MtrunA17_Chr5g0409421 28.061 196 114 8 20 202 8 189 1.30e-16 78.6
Msa1253490 MtrunA17_Chr8g0345801 28.794 257 148 11 16 251 15 257 7.77e-15 72.4
Msa1253490 MtrunA17_Chr4g0008561 27.481 262 154 12 1 245 5 247 3.17e-14 72.0
Msa1253490 MtrunA17_Chr8g0346081 28.235 255 151 12 9 251 20 254 3.20e-13 68.9
Msa1253490 MtrunA17_Chr4g0042731 27.341 267 149 11 16 255 143 391 7.75e-13 67.4
Msa1253490 MtrunA17_Chr4g0045261 28.938 273 143 16 16 255 133 387 1.26e-12 67.0
Msa1253490 MtrunA17_Chr8g0346071 27.519 258 157 12 9 255 20 258 3.21e-12 65.9
Msa1253490 MtrunA17_Chr3g0129721 30.986 213 119 9 16 213 25 224 4.53e-12 64.7
Msa1253490 MtrunA17_Chr2g0280691 26.639 244 142 11 16 235 527 757 4.60e-12 65.9
Msa1253490 MtrunA17_Chr1g0209391 26.087 207 133 6 8 202 292 490 6.42e-12 65.1
Msa1253490 MtrunA17_Chr7g0272841 29.101 189 109 6 37 217 106 277 7.20e-12 65.1
Msa1253490 MtrunA17_Chr3g0090261 27.363 201 113 10 29 213 99 282 9.93e-12 64.3
Msa1253490 MtrunA17_Chr7g0236161 30.088 226 124 10 16 225 471 678 1.34e-11 64.3
Msa1253490 MtrunA17_Chr1g0166101 27.848 237 143 8 32 255 46 267 1.39e-11 63.9
Msa1253490 MtrunA17_Chr0c02g0489761 27.536 207 116 8 63 255 138 324 2.16e-11 63.5
Msa1253490 MtrunA17_Chr3g0127571 28.413 271 157 14 9 255 131 388 2.38e-11 63.5
Msa1253490 MtrunA17_Chr4g0029241 27.817 284 149 14 5 255 106 366 2.94e-11 62.8
Msa1253490 MtrunA17_Chr7g0236201 29.114 237 131 11 16 225 471 697 3.23e-11 63.2
Msa1253490 MtrunA17_Chr2g0326531 27.381 252 131 12 32 254 141 369 3.28e-11 62.8
Msa1253490 MtrunA17_Chr7g0236121 29.114 237 131 11 16 225 505 731 3.47e-11 63.2
Msa1253490 MtrunA17_Chr4g0051261 27.885 208 116 10 14 202 2 194 3.75e-11 62.0
Msa1253490 MtrunA17_Chr3g0131181 27.234 235 127 12 10 223 23 234 3.99e-11 62.8
Msa1253490 MtrunA17_Chr2g0284011 25.461 271 157 11 9 255 5 254 4.81e-11 62.4
Msa1253490 MtrunA17_Chr1g0206231 29.412 204 110 9 16 199 347 536 6.29e-11 62.0
Msa1253490 MtrunA17_Chr8g0355131 26.104 249 154 10 19 255 64 294 7.03e-11 62.0
Msa1253490 MtrunA17_Chr4g0063881 25.781 256 164 8 9 255 14 252 9.31e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1253490 AT2G17520.1 50.508 295 104 8 2 255 399 692 3.64e-85 271
Msa1253490 AT5G24360.1 50.173 289 104 7 4 255 447 732 1.54e-83 267
Msa1253490 AT5G24360.3 50.173 289 104 7 4 255 433 718 1.64e-83 267
Msa1253490 AT5G24360.2 50.173 289 104 7 4 255 453 738 2.57e-83 266
Msa1253490 AT3G11870.1 38.676 287 133 15 9 255 113 396 1.30e-40 147
Msa1253490 AT5G18700.1 30.097 206 113 7 22 213 10 198 8.77e-17 80.1
Msa1253490 AT4G19110.1 29.082 196 112 8 20 202 8 189 1.34e-16 79.3
Msa1253490 AT4G19110.2 29.082 196 112 8 20 202 8 189 1.36e-16 79.3
Msa1253490 AT3G61960.1 30.579 242 137 11 30 254 30 257 1.13e-14 73.6
Msa1253490 AT3G61960.2 30.579 242 137 11 30 254 30 257 1.14e-14 73.6
Msa1253490 AT5G66210.6 29.317 249 133 15 30 255 82 310 1.21e-13 70.5
Msa1253490 AT5G66210.4 29.317 249 133 15 30 255 82 310 1.21e-13 70.5
Msa1253490 AT5G66210.5 29.317 249 133 15 30 255 82 310 1.63e-13 70.1
Msa1253490 AT5G66210.3 28.862 246 138 15 30 255 82 310 1.95e-13 70.1
Msa1253490 AT5G66210.1 29.317 249 133 15 30 255 82 310 2.68e-13 69.7
Msa1253490 AT5G66210.2 29.317 249 133 15 30 255 82 310 2.68e-13 69.7
Msa1253490 AT3G53930.1 28.270 237 138 10 6 225 11 232 3.44e-13 69.3
Msa1253490 AT3G53930.2 28.270 237 138 10 6 225 11 232 3.47e-13 69.3
Msa1253490 AT2G37840.1 28.400 250 139 12 9 233 6 240 4.43e-13 68.9
Msa1253490 AT3G06030.1 27.234 235 133 8 37 255 106 318 1.46e-12 67.4
Msa1253490 AT3G45240.3 26.923 286 146 11 5 255 97 354 1.96e-12 66.6
Msa1253490 AT4G31170.7 28.643 199 113 10 29 213 148 331 2.27e-12 66.6
Msa1253490 AT4G31170.6 28.643 199 113 10 29 213 148 331 2.27e-12 66.6
Msa1253490 AT4G31170.5 28.643 199 113 10 29 213 148 331 2.27e-12 66.6
Msa1253490 AT4G31170.1 28.643 199 113 10 29 213 148 331 2.27e-12 66.6
Msa1253490 AT4G31170.2 28.643 199 113 10 29 213 148 331 2.27e-12 66.6
Msa1253490 AT4G31170.3 28.643 199 113 10 29 213 148 331 2.27e-12 66.6
Msa1253490 AT4G31170.8 28.643 199 113 10 29 213 148 331 2.27e-12 66.6
Msa1253490 AT2G38620.4 33.582 134 79 5 77 202 18 149 2.57e-12 65.5
Msa1253490 AT3G54180.1 32.836 134 71 5 77 202 87 209 2.92e-12 65.9
Msa1253490 AT5G12180.1 28.708 209 115 9 61 255 131 319 3.16e-12 66.2
Msa1253490 AT5G66850.2 29.944 177 94 7 52 215 396 555 4.66e-12 65.9
Msa1253490 AT5G19360.1 28.230 209 116 9 61 255 126 314 4.92e-12 65.9
Msa1253490 AT5G66850.1 29.944 177 94 7 52 215 396 555 5.19e-12 65.9
Msa1253490 AT3G45240.2 26.644 289 146 11 5 255 97 357 5.55e-12 65.5
Msa1253490 AT3G45240.1 26.644 289 146 11 5 255 97 357 5.55e-12 65.5
Msa1253490 AT2G41140.1 28.629 248 139 13 28 255 144 373 1.09e-11 64.7
Msa1253490 AT1G53570.6 30.818 159 94 4 52 207 264 409 1.19e-11 64.7
Msa1253490 AT1G53570.7 30.818 159 94 4 52 207 264 409 1.23e-11 64.7
Msa1253490 AT1G53570.4 30.818 159 94 4 52 207 264 409 1.84e-11 64.3
Msa1253490 AT1G53570.1 30.818 159 94 4 52 207 264 409 1.84e-11 64.3
Msa1253490 AT1G53570.2 30.818 159 94 4 52 207 264 409 1.98e-11 63.9
Msa1253490 AT1G53570.3 30.818 159 94 4 52 207 264 409 1.98e-11 63.9
Msa1253490 AT3G48750.1 32.298 161 92 8 47 202 46 194 2.30e-11 63.2
Msa1253490 AT4G19110.3 29.452 146 86 6 60 202 2 133 3.98e-11 62.8
Msa1253490 AT4G12020.5 32.544 169 88 7 53 215 1601 1749 3.99e-11 63.5
Msa1253490 AT3G56760.1 27.530 247 143 11 28 255 145 374 4.11e-11 63.2
Msa1253490 AT4G12020.2 32.544 169 88 7 53 215 1676 1824 4.19e-11 63.5
Msa1253490 AT3G49370.1 27.686 242 137 11 34 255 169 392 4.20e-11 63.2
Msa1253490 AT4G12020.4 32.544 169 88 7 53 215 1668 1816 4.51e-11 63.2
Msa1253490 AT2G38620.3 35.238 105 59 4 106 202 108 211 5.40e-11 61.6
Msa1253490 AT2G38620.1 35.238 105 59 4 106 202 108 211 5.40e-11 61.6
Msa1253490 AT1G09000.1 27.513 189 112 6 37 217 107 278 5.77e-11 62.8
Msa1253490 AT2G30360.1 28.049 246 136 10 30 254 41 266 5.80e-11 62.4
Msa1253490 AT1G09000.2 27.513 189 112 6 37 217 107 278 6.47e-11 62.4
Msa1253490 AT1G14000.1 26.336 262 158 10 16 255 162 410 6.63e-11 62.4
Msa1253490 AT2G38620.2 35.238 105 59 4 106 202 108 211 9.43e-11 61.2
Msa1253490 AT5G24430.1 25.283 265 151 12 20 255 147 393 9.94e-11 62.0

Find 59 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACTTAGGGGTATTGTTGC+AGG 0.255348 8_2:+50930985 Msa1253490:intron
TCAATTCCTTGATGCTGCTC+TGG 0.258221 8_2:-50931525 None:intergenic
TACTTGCAACTTAAATGATT+TGG 0.298869 8_2:+50930780 Msa1253490:CDS
CAATTCCTTGATGCTGCTCT+GGG 0.308125 8_2:-50931524 None:intergenic
CATTTGGAGATGATCATCTT+TGG 0.309328 8_2:+50931616 Msa1253490:CDS
CAATGATTTACCTTAGATTC+TGG 0.314537 8_2:-50931734 None:intergenic
GCTACAGACATATTCAGTTT+AGG 0.344088 8_2:+50931555 Msa1253490:CDS
CCAACCTGTACAGTAGGATT+TGG 0.344486 8_2:-50931496 None:intergenic
AGGATACTACAGAATATCTT+TGG 0.362857 8_2:+50930821 Msa1253490:CDS
AACTTTAATGAAGGTGTTGA+TGG 0.366845 8_2:+50930532 Msa1253490:CDS
TCGAAAAGATCTTTCCTTAG+TGG 0.367434 8_2:+50931662 Msa1253490:CDS
TAAACCCTGACCAGAATCTA+AGG 0.378020 8_2:+50931724 Msa1253490:CDS
AGAAGCCGCTTGACTGCAAC+TGG 0.379342 8_2:-50930631 None:intergenic
TTCCTTAGTGGAGTTCATTC+CGG 0.386781 8_2:+50931674 Msa1253490:CDS
GATTTGGTTCAAGTGGAGTC+AGG 0.397235 8_2:+50930796 Msa1253490:CDS
CTAATAAGATCCTCAGCTTC+CGG 0.400149 8_2:-50931693 None:intergenic
GGCATTAACAAACATGTTCC+TGG 0.414027 8_2:+50931111 Msa1253490:CDS
ACCTTCCATTCGTCCTTCCC+TGG 0.420513 8_2:-50930597 None:intergenic
ACTAAGGGAAGCCATCCATT+TGG 0.421454 8_2:+50931600 Msa1253490:CDS
CCATGCCATTTGACAATGTT+CGG 0.427560 8_2:-50930712 None:intergenic
ATTTACCTTAGATTCTGGTC+AGG 0.428433 8_2:-50931729 None:intergenic
GTCAGAAAGCTTTACACATA+AGG 0.445083 8_2:-50931085 None:intergenic
CTTAAATGATTTGGTTCAAG+TGG 0.456881 8_2:+50930789 Msa1253490:CDS
AACTTAGGGGTATTGTTGCA+GGG 0.461822 8_2:+50930986 Msa1253490:intron
TTCGCCAAATCCTACTGTAC+AGG 0.462671 8_2:+50931492 Msa1253490:CDS
GGTGTTGATGGAGAAATAAT+TGG 0.476448 8_2:+50930544 Msa1253490:CDS
TCAAAATGTTCTAATAATCA+AGG 0.488409 8_2:+50931056 Msa1253490:CDS
ATTTGACAATGTTCGGATGA+TGG 0.500705 8_2:-50930705 None:intergenic
ATCATCCGAACATTGTCAAA+TGG 0.518090 8_2:+50930707 Msa1253490:CDS
CAAATCCTACTGTACAGGTT+GGG 0.523128 8_2:+50931497 Msa1253490:CDS
CCAAATCCTACTGTACAGGT+TGG 0.530465 8_2:+50931496 Msa1253490:CDS
AGGACGAATGGAAGGTATGA+TGG 0.531409 8_2:+50930604 Msa1253490:CDS
GTTGTTCATTTGCATAAACT+AGG 0.535949 8_2:+50931009 Msa1253490:CDS
ATGTGTAAAGCTTTCTGACA+TGG 0.538576 8_2:+50931089 Msa1253490:CDS
CCGAACATTGTCAAATGGCA+TGG 0.540381 8_2:+50930712 Msa1253490:CDS
AGTTTAAGTAGTAGAGGTGA+TGG 0.542980 8_2:-50930859 None:intergenic
ATTGGCCAGGGAAGGACGAA+TGG 0.544414 8_2:+50930592 Msa1253490:CDS
TTTACCTTAGATTCTGGTCA+GGG 0.545376 8_2:-50931728 None:intergenic
TGTGTAAAGCTTTCTGACAT+GGG 0.554737 8_2:+50931090 Msa1253490:CDS
ATTTGGTTCAAGTGGAGTCA+GGG 0.557887 8_2:+50930797 Msa1253490:CDS
TTCCGGAATGAACTCCACTA+AGG 0.560655 8_2:-50931676 None:intergenic
CAAAGATGATCATCTCCAAA+TGG 0.562429 8_2:-50931615 None:intergenic
CTCATCAGTTTAAGTAGTAG+AGG 0.562816 8_2:-50930865 None:intergenic
CTCTACTACTTAAACTGATG+AGG 0.562912 8_2:+50930866 Msa1253490:CDS
ACTTAGGGGTATTGTTGCAG+GGG 0.563653 8_2:+50930987 Msa1253490:intron
GATGATCATCTCCAAATGGA+TGG 0.581367 8_2:-50931611 None:intergenic
GGTTCAAGTGGAGTCAGGGA+AGG 0.585224 8_2:+50930801 Msa1253490:CDS
GCCAGGGAAGGACGAATGGA+AGG 0.586542 8_2:+50930596 Msa1253490:CDS
CGAAATCAGAACACTTATGT+CGG 0.592650 8_2:+50930681 Msa1253490:CDS
GTCAACCAGTTGCAGTCAAG+CGG 0.593335 8_2:+50930626 Msa1253490:CDS
GTATCGATGAACTTTAATGA+AGG 0.598118 8_2:+50930523 None:intergenic
AAGTACAACGCTCCAGTGCA+AGG 0.598602 8_2:-50930762 None:intergenic
TAAGTAGTAGAGGTGATGGA+TGG 0.602877 8_2:-50930855 None:intergenic
GGCTTCCCAACCTGTACAGT+AGG 0.608756 8_2:-50931502 None:intergenic
CATTGTCAAATGGCATGGAG+TGG 0.616032 8_2:+50930717 Msa1253490:CDS
GAAGCCCCAGAGCAGCATCA+AGG 0.621107 8_2:+50931519 Msa1253490:CDS
GGAGTTCATTCCGGAAGCTG+AGG 0.621667 8_2:+50931683 Msa1253490:CDS
AATTCCTTGATGCTGCTCTG+GGG 0.641432 8_2:-50931523 None:intergenic
CATAAACTAGGAATAATACA+CGG 0.689054 8_2:+50931021 Msa1253490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGAAAATAAAACAAAAATT+AGG - chr8_2:50931301-50931320 None:intergenic 10.0%
!! TTGAAAATAAAACAAAAATT+AGG - chr8_2:50931301-50931320 None:intergenic 10.0%
!! TTGAAAAGAAAACAAAAATT+AGG - chr8_2:50931360-50931379 None:intergenic 15.0%
!! TAAACAATATAAAGAGAAAA+AGG - chr8_2:50931456-50931475 None:intergenic 15.0%
!! TTGAAAAGAAAACAAAAATT+AGG - chr8_2:50931360-50931379 None:intergenic 15.0%
!! TAAACAATATAAAGAGAAAA+AGG - chr8_2:50931456-50931475 None:intergenic 15.0%
!!! TTGATTATTAGAACATTTTG+AGG - chr8_2:50931057-50931076 None:intergenic 20.0%
!! TCAAAATGTTCTAATAATCA+AGG + chr8_2:50931056-50931075 Msa1253490:CDS 20.0%
!! TGCTTATGTAAATTACAATA+TGG + chr8_2:50931214-50931233 Msa1253490:intron 20.0%
!! TCTCTTTATATTGTTTAAAC+AGG + chr8_2:50931459-50931478 Msa1253490:intron 20.0%
!! CTCTTTATATTGTTTAAACA+GGG + chr8_2:50931460-50931479 Msa1253490:intron 20.0%
!!! TTTTTTTTTCTGTTTGACTA+AGG + chr8_2:50931584-50931603 Msa1253490:CDS 20.0%
!!! TTTTTTTTCTGTTTGACTAA+GGG + chr8_2:50931585-50931604 Msa1253490:CDS 20.0%
!!! TTGATTATTAGAACATTTTG+AGG - chr8_2:50931057-50931076 None:intergenic 20.0%
!! TCAAAATGTTCTAATAATCA+AGG + chr8_2:50931056-50931075 Msa1253490:CDS 20.0%
!! TGCTTATGTAAATTACAATA+TGG + chr8_2:50931214-50931233 Msa1253490:intron 20.0%
!! TCTCTTTATATTGTTTAAAC+AGG + chr8_2:50931459-50931478 Msa1253490:intron 20.0%
!! CTCTTTATATTGTTTAAACA+GGG + chr8_2:50931460-50931479 Msa1253490:intron 20.0%
!!! TTTTTTTTTCTGTTTGACTA+AGG + chr8_2:50931584-50931603 Msa1253490:CDS 20.0%
!!! TTTTTTTTCTGTTTGACTAA+GGG + chr8_2:50931585-50931604 Msa1253490:CDS 20.0%
! TTCGTTTCAAAAAAAGAGAT+TGG + chr8_2:50930574-50930593 Msa1253490:CDS 25.0%
! TACTTGCAACTTAAATGATT+TGG + chr8_2:50930780-50930799 Msa1253490:CDS 25.0%
!!! CATTTTTGTTTTGCAACTTA+GGG + chr8_2:50930972-50930991 Msa1253490:intron 25.0%
!!! ATTTTTGTTTTGCAACTTAG+GGG + chr8_2:50930973-50930992 Msa1253490:intron 25.0%
! CATAAACTAGGAATAATACA+CGG + chr8_2:50931021-50931040 Msa1253490:CDS 25.0%
!! TTCTATATCAATTAGCTCTT+AGG + chr8_2:50931326-50931345 Msa1253490:intron 25.0%
! TTCGTTTCAAAAAAAGAGAT+TGG + chr8_2:50930574-50930593 Msa1253490:CDS 25.0%
! TACTTGCAACTTAAATGATT+TGG + chr8_2:50930780-50930799 Msa1253490:CDS 25.0%
!!! CATTTTTGTTTTGCAACTTA+GGG + chr8_2:50930972-50930991 Msa1253490:intron 25.0%
!!! ATTTTTGTTTTGCAACTTAG+GGG + chr8_2:50930973-50930992 Msa1253490:intron 25.0%
! CATAAACTAGGAATAATACA+CGG + chr8_2:50931021-50931040 Msa1253490:CDS 25.0%
!! TTCTATATCAATTAGCTCTT+AGG + chr8_2:50931326-50931345 Msa1253490:intron 25.0%
!! AACTTTAATGAAGGTGTTGA+TGG + chr8_2:50930532-50930551 Msa1253490:CDS 30.0%
!! AGATTTTATTTACCTTGCAC+TGG + chr8_2:50930750-50930769 Msa1253490:CDS 30.0%
!! CTTAAATGATTTGGTTCAAG+TGG + chr8_2:50930789-50930808 Msa1253490:CDS 30.0%
AGGATACTACAGAATATCTT+TGG + chr8_2:50930821-50930840 Msa1253490:CDS 30.0%
CCTAAGTTGCAAAACAAAAA+TGG - chr8_2:50930974-50930993 None:intergenic 30.0%
!!! CCATTTTTGTTTTGCAACTT+AGG + chr8_2:50930971-50930990 Msa1253490:intron 30.0%
GTTGTTCATTTGCATAAACT+AGG + chr8_2:50931009-50931028 Msa1253490:CDS 30.0%
TAAAAATCTTAGTGCTTACC+AGG - chr8_2:50931132-50931151 None:intergenic 30.0%
ACATTCACAAGTTAAATGCT+AGG - chr8_2:50931171-50931190 None:intergenic 30.0%
AACATTAGATTCGATCGATA+TGG - chr8_2:50931391-50931410 None:intergenic 30.0%
CGATCGAATCTAATGTTATT+CGG + chr8_2:50931394-50931413 Msa1253490:intron 30.0%
GAGAAAAAGGTCAATGAATT+TGG - chr8_2:50931443-50931462 None:intergenic 30.0%
!! AACTTTAATGAAGGTGTTGA+TGG + chr8_2:50930532-50930551 Msa1253490:CDS 30.0%
!! AGATTTTATTTACCTTGCAC+TGG + chr8_2:50930750-50930769 Msa1253490:CDS 30.0%
!! CTTAAATGATTTGGTTCAAG+TGG + chr8_2:50930789-50930808 Msa1253490:CDS 30.0%
AGGATACTACAGAATATCTT+TGG + chr8_2:50930821-50930840 Msa1253490:CDS 30.0%
CCTAAGTTGCAAAACAAAAA+TGG - chr8_2:50930974-50930993 None:intergenic 30.0%
!!! CCATTTTTGTTTTGCAACTT+AGG + chr8_2:50930971-50930990 Msa1253490:intron 30.0%
GTTGTTCATTTGCATAAACT+AGG + chr8_2:50931009-50931028 Msa1253490:CDS 30.0%
TAAAAATCTTAGTGCTTACC+AGG - chr8_2:50931132-50931151 None:intergenic 30.0%
ACATTCACAAGTTAAATGCT+AGG - chr8_2:50931171-50931190 None:intergenic 30.0%
AACATTAGATTCGATCGATA+TGG - chr8_2:50931391-50931410 None:intergenic 30.0%
CGATCGAATCTAATGTTATT+CGG + chr8_2:50931394-50931413 Msa1253490:intron 30.0%
GAGAAAAAGGTCAATGAATT+TGG - chr8_2:50931443-50931462 None:intergenic 30.0%
!! GGTGTTGATGGAGAAATAAT+TGG + chr8_2:50930544-50930563 Msa1253490:CDS 35.0%
! TTCAAAAAAAGAGATTGGCC+AGG + chr8_2:50930579-50930598 Msa1253490:CDS 35.0%
! TCAAAAAAAGAGATTGGCCA+GGG + chr8_2:50930580-50930599 Msa1253490:CDS 35.0%
CGAAATCAGAACACTTATGT+CGG + chr8_2:50930681-50930700 Msa1253490:CDS 35.0%
ATTTGACAATGTTCGGATGA+TGG - chr8_2:50930708-50930727 None:intergenic 35.0%
ATCATCCGAACATTGTCAAA+TGG + chr8_2:50930707-50930726 Msa1253490:CDS 35.0%
AGTTTAAGTAGTAGAGGTGA+TGG - chr8_2:50930862-50930881 None:intergenic 35.0%
CTCATCAGTTTAAGTAGTAG+AGG - chr8_2:50930868-50930887 None:intergenic 35.0%
CTCTACTACTTAAACTGATG+AGG + chr8_2:50930866-50930885 Msa1253490:CDS 35.0%
CTTACAATGTGCACAAGTAA+GGG - chr8_2:50930913-50930932 None:intergenic 35.0%
ACTTACAATGTGCACAAGTA+AGG - chr8_2:50930914-50930933 None:intergenic 35.0%
GTCAGAAAGCTTTACACATA+AGG - chr8_2:50931088-50931107 None:intergenic 35.0%
ATGTGTAAAGCTTTCTGACA+TGG + chr8_2:50931089-50931108 Msa1253490:CDS 35.0%
TGTGTAAAGCTTTCTGACAT+GGG + chr8_2:50931090-50931109 Msa1253490:CDS 35.0%
ATGTCCAATTATGTCTAGCA+TGG + chr8_2:50931187-50931206 Msa1253490:intron 35.0%
TGTCCAATTATGTCTAGCAT+GGG + chr8_2:50931188-50931207 Msa1253490:intron 35.0%
AATCCCATGCTAGACATAAT+TGG - chr8_2:50931194-50931213 None:intergenic 35.0%
GCTACAGACATATTCAGTTT+AGG + chr8_2:50931555-50931574 Msa1253490:CDS 35.0%
CAAAGATGATCATCTCCAAA+TGG - chr8_2:50931618-50931637 None:intergenic 35.0%
CATTTGGAGATGATCATCTT+TGG + chr8_2:50931616-50931635 Msa1253490:CDS 35.0%
! TTTTCGATCGTTCAGGATAT+TGG - chr8_2:50931649-50931668 None:intergenic 35.0%
! AAAGATCTTTTCGATCGTTC+AGG - chr8_2:50931656-50931675 None:intergenic 35.0%
TCGAAAAGATCTTTCCTTAG+TGG + chr8_2:50931662-50931681 Msa1253490:CDS 35.0%
!! GGTGTTGATGGAGAAATAAT+TGG + chr8_2:50930544-50930563 Msa1253490:CDS 35.0%
! TTCAAAAAAAGAGATTGGCC+AGG + chr8_2:50930579-50930598 Msa1253490:CDS 35.0%
! TCAAAAAAAGAGATTGGCCA+GGG + chr8_2:50930580-50930599 Msa1253490:CDS 35.0%
CGAAATCAGAACACTTATGT+CGG + chr8_2:50930681-50930700 Msa1253490:CDS 35.0%
ATTTGACAATGTTCGGATGA+TGG - chr8_2:50930708-50930727 None:intergenic 35.0%
ATCATCCGAACATTGTCAAA+TGG + chr8_2:50930707-50930726 Msa1253490:CDS 35.0%
AGTTTAAGTAGTAGAGGTGA+TGG - chr8_2:50930862-50930881 None:intergenic 35.0%
CTCATCAGTTTAAGTAGTAG+AGG - chr8_2:50930868-50930887 None:intergenic 35.0%
CTCTACTACTTAAACTGATG+AGG + chr8_2:50930866-50930885 Msa1253490:CDS 35.0%
CTTACAATGTGCACAAGTAA+GGG - chr8_2:50930913-50930932 None:intergenic 35.0%
ACTTACAATGTGCACAAGTA+AGG - chr8_2:50930914-50930933 None:intergenic 35.0%
GTCAGAAAGCTTTACACATA+AGG - chr8_2:50931088-50931107 None:intergenic 35.0%
ATGTGTAAAGCTTTCTGACA+TGG + chr8_2:50931089-50931108 Msa1253490:CDS 35.0%
TGTGTAAAGCTTTCTGACAT+GGG + chr8_2:50931090-50931109 Msa1253490:CDS 35.0%
ATGTCCAATTATGTCTAGCA+TGG + chr8_2:50931187-50931206 Msa1253490:intron 35.0%
TGTCCAATTATGTCTAGCAT+GGG + chr8_2:50931188-50931207 Msa1253490:intron 35.0%
AATCCCATGCTAGACATAAT+TGG - chr8_2:50931194-50931213 None:intergenic 35.0%
GCTACAGACATATTCAGTTT+AGG + chr8_2:50931555-50931574 Msa1253490:CDS 35.0%
CAAAGATGATCATCTCCAAA+TGG - chr8_2:50931618-50931637 None:intergenic 35.0%
CATTTGGAGATGATCATCTT+TGG + chr8_2:50931616-50931635 Msa1253490:CDS 35.0%
! TTTTCGATCGTTCAGGATAT+TGG - chr8_2:50931649-50931668 None:intergenic 35.0%
! AAAGATCTTTTCGATCGTTC+AGG - chr8_2:50931656-50931675 None:intergenic 35.0%
TCGAAAAGATCTTTCCTTAG+TGG + chr8_2:50931662-50931681 Msa1253490:CDS 35.0%
! CCATGCCATTTGACAATGTT+CGG - chr8_2:50930715-50930734 None:intergenic 40.0%
! ATTTGGTTCAAGTGGAGTCA+GGG + chr8_2:50930797-50930816 Msa1253490:CDS 40.0%
!! TAAGTAGTAGAGGTGATGGA+TGG - chr8_2:50930858-50930877 None:intergenic 40.0%
!! AACTTAGGGGTATTGTTGCA+GGG + chr8_2:50930986-50931005 Msa1253490:intron 40.0%
GGCATTAACAAACATGTTCC+TGG + chr8_2:50931111-50931130 Msa1253490:CDS 40.0%
CAAATCCTACTGTACAGGTT+GGG + chr8_2:50931497-50931516 Msa1253490:CDS 40.0%
GATGATCATCTCCAAATGGA+TGG - chr8_2:50931614-50931633 None:intergenic 40.0%
TTCCTTAGTGGAGTTCATTC+CGG + chr8_2:50931674-50931693 Msa1253490:CDS 40.0%
CTAATAAGATCCTCAGCTTC+CGG - chr8_2:50931696-50931715 None:intergenic 40.0%
TAAACCCTGACCAGAATCTA+AGG + chr8_2:50931724-50931743 Msa1253490:CDS 40.0%
! CCATGCCATTTGACAATGTT+CGG - chr8_2:50930715-50930734 None:intergenic 40.0%
! ATTTGGTTCAAGTGGAGTCA+GGG + chr8_2:50930797-50930816 Msa1253490:CDS 40.0%
!! TAAGTAGTAGAGGTGATGGA+TGG - chr8_2:50930858-50930877 None:intergenic 40.0%
!! AACTTAGGGGTATTGTTGCA+GGG + chr8_2:50930986-50931005 Msa1253490:intron 40.0%
GGCATTAACAAACATGTTCC+TGG + chr8_2:50931111-50931130 Msa1253490:CDS 40.0%
CAAATCCTACTGTACAGGTT+GGG + chr8_2:50931497-50931516 Msa1253490:CDS 40.0%
GATGATCATCTCCAAATGGA+TGG - chr8_2:50931614-50931633 None:intergenic 40.0%
TTCCTTAGTGGAGTTCATTC+CGG + chr8_2:50931674-50931693 Msa1253490:CDS 40.0%
CTAATAAGATCCTCAGCTTC+CGG - chr8_2:50931696-50931715 None:intergenic 40.0%
TAAACCCTGACCAGAATCTA+AGG + chr8_2:50931724-50931743 Msa1253490:CDS 40.0%
! AAAAAGAGATTGGCCAGGGA+AGG + chr8_2:50930584-50930603 Msa1253490:CDS 45.0%
! AGGACGAATGGAAGGTATGA+TGG + chr8_2:50930604-50930623 Msa1253490:CDS 45.0%
CCGAACATTGTCAAATGGCA+TGG + chr8_2:50930712-50930731 Msa1253490:CDS 45.0%
CATTGTCAAATGGCATGGAG+TGG + chr8_2:50930717-50930736 Msa1253490:CDS 45.0%
! GATTTGGTTCAAGTGGAGTC+AGG + chr8_2:50930796-50930815 Msa1253490:CDS 45.0%
!! CAACTTAGGGGTATTGTTGC+AGG + chr8_2:50930985-50931004 Msa1253490:intron 45.0%
!! ACTTAGGGGTATTGTTGCAG+GGG + chr8_2:50930987-50931006 Msa1253490:intron 45.0%
TTCGCCAAATCCTACTGTAC+AGG + chr8_2:50931492-50931511 Msa1253490:CDS 45.0%
CCAACCTGTACAGTAGGATT+TGG - chr8_2:50931499-50931518 None:intergenic 45.0%
CCAAATCCTACTGTACAGGT+TGG + chr8_2:50931496-50931515 Msa1253490:CDS 45.0%
AATTCCTTGATGCTGCTCTG+GGG - chr8_2:50931526-50931545 None:intergenic 45.0%
CAATTCCTTGATGCTGCTCT+GGG - chr8_2:50931527-50931546 None:intergenic 45.0%
TCAATTCCTTGATGCTGCTC+TGG - chr8_2:50931528-50931547 None:intergenic 45.0%
ACTAAGGGAAGCCATCCATT+TGG + chr8_2:50931600-50931619 Msa1253490:CDS 45.0%
TTCCGGAATGAACTCCACTA+AGG - chr8_2:50931679-50931698 None:intergenic 45.0%
! AAAAAGAGATTGGCCAGGGA+AGG + chr8_2:50930584-50930603 Msa1253490:CDS 45.0%
! AGGACGAATGGAAGGTATGA+TGG + chr8_2:50930604-50930623 Msa1253490:CDS 45.0%
CCGAACATTGTCAAATGGCA+TGG + chr8_2:50930712-50930731 Msa1253490:CDS 45.0%
CATTGTCAAATGGCATGGAG+TGG + chr8_2:50930717-50930736 Msa1253490:CDS 45.0%
! GATTTGGTTCAAGTGGAGTC+AGG + chr8_2:50930796-50930815 Msa1253490:CDS 45.0%
!! CAACTTAGGGGTATTGTTGC+AGG + chr8_2:50930985-50931004 Msa1253490:intron 45.0%
!! ACTTAGGGGTATTGTTGCAG+GGG + chr8_2:50930987-50931006 Msa1253490:intron 45.0%
TTCGCCAAATCCTACTGTAC+AGG + chr8_2:50931492-50931511 Msa1253490:CDS 45.0%
CCAACCTGTACAGTAGGATT+TGG - chr8_2:50931499-50931518 None:intergenic 45.0%
CCAAATCCTACTGTACAGGT+TGG + chr8_2:50931496-50931515 Msa1253490:CDS 45.0%
AATTCCTTGATGCTGCTCTG+GGG - chr8_2:50931526-50931545 None:intergenic 45.0%
CAATTCCTTGATGCTGCTCT+GGG - chr8_2:50931527-50931546 None:intergenic 45.0%
TCAATTCCTTGATGCTGCTC+TGG - chr8_2:50931528-50931547 None:intergenic 45.0%
ACTAAGGGAAGCCATCCATT+TGG + chr8_2:50931600-50931619 Msa1253490:CDS 45.0%
TTCCGGAATGAACTCCACTA+AGG - chr8_2:50931679-50931698 None:intergenic 45.0%
GTCAACCAGTTGCAGTCAAG+CGG + chr8_2:50930626-50930645 Msa1253490:CDS 50.0%
AAGTACAACGCTCCAGTGCA+AGG - chr8_2:50930765-50930784 None:intergenic 50.0%
GTCAACCAGTTGCAGTCAAG+CGG + chr8_2:50930626-50930645 Msa1253490:CDS 50.0%
AAGTACAACGCTCCAGTGCA+AGG - chr8_2:50930765-50930784 None:intergenic 50.0%
ATTGGCCAGGGAAGGACGAA+TGG + chr8_2:50930592-50930611 Msa1253490:CDS 55.0%
ACCTTCCATTCGTCCTTCCC+TGG - chr8_2:50930600-50930619 None:intergenic 55.0%
AGAAGCCGCTTGACTGCAAC+TGG - chr8_2:50930634-50930653 None:intergenic 55.0%
GGTTCAAGTGGAGTCAGGGA+AGG + chr8_2:50930801-50930820 Msa1253490:CDS 55.0%
GGCTTCCCAACCTGTACAGT+AGG - chr8_2:50931505-50931524 None:intergenic 55.0%
GGAGTTCATTCCGGAAGCTG+AGG + chr8_2:50931683-50931702 Msa1253490:CDS 55.0%
ATTGGCCAGGGAAGGACGAA+TGG + chr8_2:50930592-50930611 Msa1253490:CDS 55.0%
ACCTTCCATTCGTCCTTCCC+TGG - chr8_2:50930600-50930619 None:intergenic 55.0%
AGAAGCCGCTTGACTGCAAC+TGG - chr8_2:50930634-50930653 None:intergenic 55.0%
GGTTCAAGTGGAGTCAGGGA+AGG + chr8_2:50930801-50930820 Msa1253490:CDS 55.0%
GGCTTCCCAACCTGTACAGT+AGG - chr8_2:50931505-50931524 None:intergenic 55.0%
GGAGTTCATTCCGGAAGCTG+AGG + chr8_2:50931683-50931702 Msa1253490:CDS 55.0%
GCCAGGGAAGGACGAATGGA+AGG + chr8_2:50930596-50930615 Msa1253490:CDS 60.0%
GAAGCCCCAGAGCAGCATCA+AGG + chr8_2:50931519-50931538 Msa1253490:CDS 60.0%
GCCAGGGAAGGACGAATGGA+AGG + chr8_2:50930596-50930615 Msa1253490:CDS 60.0%
GAAGCCCCAGAGCAGCATCA+AGG + chr8_2:50931519-50931538 Msa1253490:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 50930529 50931749 50930529 ID=Msa1253490;Name=Msa1253490
chr8_2 mRNA 50930529 50931749 50930529 ID=Msa1253490-mRNA-1;Parent=Msa1253490;Name=Msa1253490-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0|0|1|1|1|3|0|255
chr8_2 exon 50930529 50930887 50930529 ID=Msa1253490-mRNA-1:exon:15569;Parent=Msa1253490-mRNA-1
chr8_2 exon 50930993 50931132 50930993 ID=Msa1253490-mRNA-1:exon:15570;Parent=Msa1253490-mRNA-1
chr8_2 exon 50931481 50931749 50931481 ID=Msa1253490-mRNA-1:exon:15571;Parent=Msa1253490-mRNA-1
chr8_2 CDS 50930529 50930887 50930529 ID=Msa1253490-mRNA-1:cds;Parent=Msa1253490-mRNA-1
chr8_2 CDS 50930993 50931132 50930993 ID=Msa1253490-mRNA-1:cds;Parent=Msa1253490-mRNA-1
chr8_2 CDS 50931481 50931749 50931481 ID=Msa1253490-mRNA-1:cds;Parent=Msa1253490-mRNA-1
Gene Sequence

>Msa1253490

ATGAACTTTAATGAAGGTGTTGATGGAGAAATAATTGGCGAATTATTCGTTTCAAAAAAAGAGATTGGCCAGGGAAGGACGAATGGAAGGTATGATGGTCAACCAGTTGCAGTCAAGCGGCTTCTCAAATCTCATCATAGTCTAGCTCTAAACGAAATCAGAACACTTATGTCGGACCATCATCCGAACATTGTCAAATGGCATGGAGTGGAGTACGATGAAGATTTTATTTACCTTGCACTGGAGCGTTGTACTTGCAACTTAAATGATTTGGTTCAAGTGGAGTCAGGGAAGGATACTACAGAATATCTTTGGAAAAAAAATGACCATCCATCACCTCTACTACTTAAACTGATGAGGGGTATTGTTGCAGGGGTTGTTCATTTGCATAAACTAGGAATAATACACGGAAATTTGAAACCTCAAAATGTTCTAATAATCAAGGATAGATCCTTATGTGTAAAGCTTTCTGACATGGGCATTAACAAACATGTTCCTGGGAAGTCTGTTTTCGCCAAATCCTACTGTACAGGTTGGGAAGCCCCAGAGCAGCATCAAGGAATTGAAACACAAGCTACAGACATATTCAGTTTAGGTTGTATTTTTTTTTTCTGTTTGACTAAGGGAAGCCATCCATTTGGAGATGATCATCTTTGGCGTGAGTCCAATATCCTGAACGATCGAAAAGATCTTTCCTTAGTGGAGTTCATTCCGGAAGCTGAGGATCTTATTAGCTGTTTATTAAACCCTGACCAGAATCTAAGGTAA

Protein sequence

>Msa1253490

MNFNEGVDGEIIGELFVSKKEIGQGRTNGRYDGQPVAVKRLLKSHHSLALNEIRTLMSDHHPNIVKWHGVEYDEDFIYLALERCTCNLNDLVQVESGKDTTEYLWKKNDHPSPLLLKLMRGIVAGVVHLHKLGIIHGNLKPQNVLIIKDRSLCVKLSDMGINKHVPGKSVFAKSYCTGWEAPEQHQGIETQATDIFSLGCIFFFCLTKGSHPFGDDHLWRESNILNDRKDLSLVEFIPEAEDLISCLLNPDQNLR*