Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1253740 | XP_003629108.2 | 98.652 | 445 | 3 | 1 | 1 | 445 | 1 | 442 | 0.0 | 909 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1253740 | sp|Q45FA5|SRPK_PHYPO | 44.363 | 408 | 210 | 6 | 10 | 415 | 29 | 421 | 8.62e-112 | 338 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1253740 | G7L8Q0 | 98.652 | 445 | 3 | 1 | 1 | 445 | 1 | 442 | 0.0 | 909 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1253740 | MtrunA17_Chr8g0370321 | 98.652 | 445 | 3 | 1 | 1 | 445 | 1 | 442 | 0.0 | 909 |
| Msa1253740 | MtrunA17_Chr5g0407121 | 82.287 | 446 | 78 | 1 | 1 | 445 | 1 | 446 | 0.0 | 745 |
| Msa1253740 | MtrunA17_Chr1g0179611 | 48.456 | 518 | 189 | 6 | 2 | 441 | 8 | 525 | 1.58e-173 | 497 |
| Msa1253740 | MtrunA17_Chr4g0027671 | 48.155 | 515 | 181 | 7 | 12 | 441 | 13 | 526 | 3.36e-167 | 481 |
| Msa1253740 | MtrunA17_Chr2g0320631 | 46.014 | 276 | 126 | 3 | 183 | 441 | 253 | 522 | 2.16e-80 | 258 |
| Msa1253740 | MtrunA17_Chr2g0320631 | 56.019 | 216 | 82 | 1 | 6 | 208 | 8 | 223 | 2.59e-79 | 255 |
| Msa1253740 | MtrunA17_Chr3g0139371 | 29.665 | 418 | 217 | 14 | 5 | 413 | 49 | 398 | 6.22e-40 | 147 |
| Msa1253740 | MtrunA17_Chr3g0116701 | 29.369 | 412 | 204 | 13 | 21 | 414 | 78 | 420 | 2.47e-39 | 146 |
| Msa1253740 | MtrunA17_Chr4g0058241 | 29.440 | 411 | 209 | 13 | 21 | 416 | 82 | 426 | 9.14e-38 | 142 |
| Msa1253740 | MtrunA17_Chr3g0123491 | 28.530 | 347 | 185 | 9 | 21 | 367 | 77 | 360 | 3.14e-33 | 130 |
| Msa1253740 | MtrunA17_Chr6g0480541 | 32.738 | 168 | 99 | 5 | 252 | 413 | 1041 | 1200 | 5.93e-20 | 93.2 |
| Msa1253740 | MtrunA17_Chr6g0480541 | 31.544 | 149 | 93 | 3 | 35 | 179 | 895 | 1038 | 1.39e-11 | 67.0 |
| Msa1253740 | MtrunA17_Chr5g0437131 | 31.098 | 164 | 101 | 4 | 254 | 413 | 550 | 705 | 2.69e-18 | 87.8 |
| Msa1253740 | MtrunA17_Chr5g0437131 | 32.258 | 155 | 96 | 3 | 29 | 179 | 394 | 543 | 1.80e-12 | 69.3 |
| Msa1253740 | MtrunA17_Chr8g0369241 | 31.694 | 183 | 112 | 5 | 37 | 217 | 138 | 309 | 7.50e-18 | 86.7 |
| Msa1253740 | MtrunA17_Chr8g0369241 | 39.815 | 108 | 58 | 3 | 254 | 360 | 285 | 386 | 9.55e-14 | 73.6 |
| Msa1253740 | MtrunA17_Chr1g0210061 | 32.609 | 184 | 91 | 8 | 254 | 416 | 757 | 928 | 1.48e-13 | 73.2 |
| Msa1253740 | MtrunA17_Chr1g0210061 | 30.233 | 172 | 101 | 5 | 11 | 177 | 592 | 749 | 2.34e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1253740 | AT4G35500.1 | 73.034 | 445 | 109 | 3 | 1 | 442 | 1 | 437 | 0.0 | 665 |
| Msa1253740 | AT2G17530.1 | 73.423 | 444 | 108 | 3 | 1 | 442 | 1 | 436 | 0.0 | 655 |
| Msa1253740 | AT2G17530.3 | 73.423 | 444 | 108 | 3 | 1 | 442 | 1 | 436 | 0.0 | 655 |
| Msa1253740 | AT4G35500.2 | 70.852 | 446 | 118 | 4 | 1 | 442 | 1 | 438 | 0.0 | 642 |
| Msa1253740 | AT2G17530.2 | 78.655 | 342 | 71 | 2 | 1 | 340 | 1 | 342 | 0.0 | 527 |
| Msa1253740 | AT3G53030.1 | 50.420 | 476 | 178 | 6 | 12 | 431 | 16 | 489 | 9.18e-168 | 482 |
| Msa1253740 | AT5G22840.1 | 49.476 | 477 | 184 | 4 | 4 | 428 | 11 | 482 | 7.39e-165 | 475 |
| Msa1253740 | AT3G44850.1 | 47.276 | 514 | 191 | 6 | 12 | 445 | 19 | 532 | 1.40e-162 | 469 |
| Msa1253740 | AT3G53570.1 | 29.676 | 401 | 218 | 10 | 21 | 413 | 99 | 443 | 3.89e-39 | 147 |
| Msa1253740 | AT3G53570.4 | 29.676 | 401 | 218 | 10 | 21 | 413 | 99 | 443 | 3.89e-39 | 147 |
| Msa1253740 | AT3G53570.2 | 29.676 | 401 | 218 | 10 | 21 | 413 | 99 | 443 | 3.89e-39 | 147 |
| Msa1253740 | AT3G53570.3 | 29.676 | 401 | 218 | 10 | 21 | 413 | 85 | 429 | 5.20e-39 | 146 |
| Msa1253740 | AT3G53570.5 | 29.676 | 401 | 218 | 10 | 21 | 413 | 85 | 429 | 5.20e-39 | 146 |
| Msa1253740 | AT4G24740.7 | 29.710 | 414 | 204 | 14 | 21 | 416 | 44 | 388 | 1.63e-38 | 144 |
| Msa1253740 | AT4G24740.1 | 29.710 | 414 | 204 | 14 | 21 | 416 | 82 | 426 | 4.85e-38 | 143 |
| Msa1253740 | AT4G24740.6 | 29.412 | 391 | 190 | 13 | 44 | 416 | 1 | 323 | 5.97e-36 | 135 |
| Msa1253740 | AT4G24740.9 | 29.412 | 391 | 190 | 13 | 44 | 416 | 1 | 323 | 5.97e-36 | 135 |
| Msa1253740 | AT4G24740.2 | 29.412 | 391 | 190 | 13 | 44 | 416 | 1 | 323 | 5.97e-36 | 135 |
| Msa1253740 | AT4G32660.3 | 27.792 | 403 | 220 | 11 | 21 | 413 | 47 | 388 | 7.30e-36 | 137 |
| Msa1253740 | AT4G32660.1 | 27.792 | 403 | 220 | 11 | 21 | 413 | 55 | 396 | 8.95e-36 | 136 |
| Msa1253740 | AT4G24740.3 | 30.625 | 320 | 164 | 8 | 21 | 340 | 82 | 343 | 6.02e-34 | 130 |
| Msa1253740 | AT4G32660.2 | 29.254 | 335 | 178 | 10 | 21 | 355 | 55 | 330 | 5.56e-33 | 128 |
| Msa1253740 | AT4G24740.5 | 31.313 | 297 | 147 | 8 | 44 | 340 | 1 | 240 | 7.69e-32 | 122 |
| Msa1253740 | AT4G32660.4 | 28.863 | 343 | 172 | 12 | 82 | 413 | 3 | 284 | 1.01e-29 | 117 |
| Msa1253740 | AT4G24740.4 | 30.420 | 286 | 147 | 7 | 21 | 306 | 82 | 315 | 6.60e-28 | 113 |
| Msa1253740 | AT1G73460.2 | 34.524 | 168 | 96 | 5 | 252 | 413 | 1001 | 1160 | 1.24e-21 | 98.6 |
| Msa1253740 | AT1G73460.1 | 34.524 | 168 | 96 | 5 | 252 | 413 | 1001 | 1160 | 1.24e-21 | 98.6 |
| Msa1253740 | AT1G73450.1 | 34.524 | 168 | 96 | 5 | 252 | 413 | 984 | 1143 | 1.35e-21 | 98.6 |
| Msa1253740 | AT2G40120.1 | 24.561 | 399 | 210 | 12 | 29 | 418 | 252 | 568 | 8.89e-21 | 95.5 |
| Msa1253740 | AT4G24740.10 | 29.630 | 270 | 110 | 10 | 165 | 416 | 13 | 220 | 3.27e-20 | 89.4 |
| Msa1253740 | AT4G24740.8 | 29.630 | 270 | 110 | 10 | 165 | 416 | 13 | 220 | 3.27e-20 | 89.4 |
| Msa1253740 | AT5G35980.2 | 29.717 | 212 | 129 | 7 | 12 | 217 | 94 | 291 | 5.00e-19 | 90.5 |
| Msa1253740 | AT5G35980.2 | 30.918 | 207 | 87 | 7 | 254 | 413 | 267 | 464 | 1.39e-14 | 76.6 |
| Msa1253740 | AT5G35980.3 | 29.717 | 212 | 129 | 7 | 12 | 217 | 59 | 256 | 9.27e-19 | 89.7 |
| Msa1253740 | AT5G35980.3 | 43.878 | 98 | 49 | 2 | 254 | 351 | 232 | 323 | 1.45e-14 | 76.6 |
| Msa1253740 | AT5G35980.1 | 30.769 | 182 | 114 | 4 | 37 | 217 | 121 | 291 | 9.52e-19 | 89.7 |
| Msa1253740 | AT5G35980.1 | 30.918 | 207 | 87 | 7 | 254 | 413 | 267 | 464 | 1.36e-14 | 76.6 |
| Msa1253740 | AT3G17750.1 | 32.143 | 168 | 100 | 5 | 252 | 413 | 970 | 1129 | 1.43e-17 | 86.3 |
| Msa1253740 | AT3G53640.1 | 31.148 | 183 | 96 | 6 | 254 | 416 | 470 | 642 | 2.14e-14 | 75.9 |
| Msa1253740 | AT1G13350.1 | 30.435 | 184 | 96 | 7 | 254 | 416 | 589 | 761 | 3.00e-13 | 72.4 |
| Msa1253740 | AT1G13350.1 | 30.814 | 172 | 100 | 5 | 11 | 177 | 424 | 581 | 7.13e-12 | 68.2 |
| Msa1253740 | AT1G13350.2 | 30.435 | 184 | 96 | 7 | 254 | 416 | 616 | 788 | 3.43e-13 | 72.4 |
| Msa1253740 | AT1G13350.2 | 30.814 | 172 | 100 | 5 | 11 | 177 | 451 | 608 | 7.71e-12 | 68.2 |
| Msa1253740 | AT1G13350.3 | 30.435 | 184 | 96 | 7 | 254 | 416 | 662 | 834 | 3.62e-13 | 72.4 |
| Msa1253740 | AT1G13350.3 | 30.814 | 172 | 100 | 5 | 11 | 177 | 497 | 654 | 9.02e-12 | 67.8 |
| Msa1253740 | AT3G25840.2 | 31.694 | 183 | 94 | 7 | 254 | 416 | 502 | 673 | 7.19e-13 | 71.2 |
| Msa1253740 | AT3G25840.1 | 31.720 | 186 | 90 | 9 | 254 | 416 | 764 | 935 | 8.67e-13 | 71.2 |
Find 138 sgRNAs with CRISPR-Local
Find 267 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATATTTCTATCAGAATT+TGG | 0.182704 | 8_2:-51392271 | None:intergenic |
| AATGTAAATCTTATTGAATT+TGG | 0.189427 | 8_2:-51393978 | None:intergenic |
| ATGTCTTGTTCTTCTTCATC+TGG | 0.217080 | 8_2:+51390669 | Msa1253740:CDS |
| GGATTCGGAGGCTAAAATTT+TGG | 0.237408 | 8_2:+51393628 | Msa1253740:CDS |
| TTCTGGACAAAGAGCTTCTA+TGG | 0.246761 | 8_2:+51392231 | Msa1253740:CDS |
| TTCTGCAGTTGGTCGCTTCT+CGG | 0.258297 | 8_2:-51393745 | None:intergenic |
| AGGGCGGTAGCTAAAATTTC+TGG | 0.265940 | 8_2:+51392214 | Msa1253740:CDS |
| CCATGAGCCAAGGGTGTTGC+AGG | 0.266108 | 8_2:-51393773 | None:intergenic |
| ATGAAATTATGAGATTATTA+AGG | 0.272892 | 8_2:-51390553 | None:intergenic |
| AGATGCAAAGTGGTTGATTT+TGG | 0.275568 | 8_2:+51392307 | Msa1253740:CDS |
| GTACATAGCTCAGAGGAAAT+TGG | 0.318879 | 8_2:+51390779 | Msa1253740:CDS |
| AAAACTTGAAAATGTTCTTC+TGG | 0.321760 | 8_2:+51392063 | Msa1253740:CDS |
| CCCTCAGGCCTCTCTAAAAT+CGG | 0.323007 | 8_2:-51392133 | None:intergenic |
| GCTAAAACCTTGTCCGACTT+TGG | 0.352838 | 8_2:-51392491 | None:intergenic |
| TTCCAAGAAGTTCCATCATC+AGG | 0.355151 | 8_2:-51393336 | None:intergenic |
| GTCTGAATTTCTTCCGCAAA+TGG | 0.355796 | 8_2:-51392352 | None:intergenic |
| AAATTTCTGTCAAATATCTA+TGG | 0.364734 | 8_2:-51394055 | None:intergenic |
| CTAAAACCTTGTCCGACTTT+GGG | 0.366642 | 8_2:-51392490 | None:intergenic |
| GGGGAGACTCCCGATCTAAC+AGG | 0.374226 | 8_2:-51392112 | None:intergenic |
| TGCATGGTACTCGAGTTTCT+TGG | 0.380701 | 8_2:+51391905 | Msa1253740:CDS |
| TCAATCAATAGTTTGTTAAG+AGG | 0.383534 | 8_2:-51393651 | None:intergenic |
| AGCTCAGAGGAAATTGGGTT+GGG | 0.387320 | 8_2:+51390785 | Msa1253740:CDS |
| ATGTTGAAGAGGGGACTTAG+AGG | 0.388043 | 8_2:-51393917 | None:intergenic |
| CGGTGGGAACACTACCTTCC+GGG | 0.395671 | 8_2:-51393365 | None:intergenic |
| GATTGTTGTTGTTCTATTTG+TGG | 0.405910 | 8_2:-51390522 | None:intergenic |
| GCCCTGATGATGGAACTTCT+TGG | 0.408568 | 8_2:+51393334 | Msa1253740:CDS |
| ATTGCTTTCGAGCTTGCCAC+TGG | 0.409835 | 8_2:+51392451 | Msa1253740:CDS |
| TGTCTTGTTCTTCTTCATCT+GGG | 0.422803 | 8_2:+51390670 | Msa1253740:CDS |
| GCTTAAAGTGGTCGATCAAT+TGG | 0.423698 | 8_2:-51391856 | None:intergenic |
| ATGCATTGGTGCTGGCCGTT+AGG | 0.428045 | 8_2:-51391887 | None:intergenic |
| GATTCATTTCTCATTTCATC+AGG | 0.430586 | 8_2:-51393810 | None:intergenic |
| TACATAGCTCAGAGGAAATT+GGG | 0.433819 | 8_2:+51390780 | Msa1253740:CDS |
| TCTGCAGTTGGTCGCTTCTC+GGG | 0.434856 | 8_2:-51393744 | None:intergenic |
| CTCTTAGCTTTGAGACCTCA+TGG | 0.438650 | 8_2:-51394125 | None:intergenic |
| AAGGTGGATACCATGCTGTC+CGG | 0.459235 | 8_2:+51390730 | Msa1253740:CDS |
| ACACCCTTGGCTCATGGAAA+AGG | 0.460564 | 8_2:+51393779 | Msa1253740:CDS |
| CCTCAGGCCTCTCTAAAATC+GGG | 0.463410 | 8_2:-51392132 | None:intergenic |
| GTCTTCCGATGAATAAAGTC+AGG | 0.469765 | 8_2:+51391969 | Msa1253740:CDS |
| AATTCTGATAGAAATATTGA+TGG | 0.472298 | 8_2:+51392274 | Msa1253740:CDS |
| AAAAGTTGAAAAGGAGAGCA+AGG | 0.476403 | 8_2:+51392191 | Msa1253740:CDS |
| AGAGCTTCTATGGGAGGAAT+GGG | 0.477776 | 8_2:+51392241 | Msa1253740:CDS |
| TGGTTTGGATTACTTGCATA+GGG | 0.485784 | 8_2:+51392015 | Msa1253740:CDS |
| CCTGCAACACCCTTGGCTCA+TGG | 0.486242 | 8_2:+51393773 | Msa1253740:CDS |
| AAGAGCTTCTATGGGAGGAA+TGG | 0.488237 | 8_2:+51392240 | Msa1253740:CDS |
| ACGGGGATCTCAAAAGGATT+CGG | 0.490967 | 8_2:+51393613 | Msa1253740:CDS |
| AACTTCTTGGAAAGATGCCC+CGG | 0.491317 | 8_2:+51393347 | Msa1253740:CDS |
| AGGCCTGAGGGAAACATAAA+CGG | 0.492588 | 8_2:+51392145 | Msa1253740:CDS |
| CCAGCCTGCAGTATAACTTC+AGG | 0.494640 | 8_2:-51392391 | None:intergenic |
| ATTCCTTCTCCGTCGATATG+TGG | 0.494693 | 8_2:+51392416 | Msa1253740:CDS |
| ATGTTACAGGTTGCTACTGC+AGG | 0.497187 | 8_2:+51393561 | Msa1253740:intron |
| ACAGACACGGGGATCTCAAA+AGG | 0.497743 | 8_2:+51393607 | Msa1253740:CDS |
| GGCGAAAGACCCTGTTAGAT+CGG | 0.498073 | 8_2:+51392102 | Msa1253740:CDS |
| AACAGTGCCTGCAACACCCT+TGG | 0.502041 | 8_2:+51393766 | Msa1253740:CDS |
| TCTGGTTTCTACTATCGATC+CGG | 0.502093 | 8_2:+51392081 | Msa1253740:CDS |
| AATAAGCAACCTTAAAATCA+AGG | 0.503806 | 8_2:+51393857 | Msa1253740:CDS |
| TGCAGGCACTGTTCTGCAGT+TGG | 0.504517 | 8_2:-51393756 | None:intergenic |
| GTGCCGTTTATGTTTCCCTC+AGG | 0.511385 | 8_2:-51392148 | None:intergenic |
| GCGAAAGACCCTGTTAGATC+GGG | 0.514836 | 8_2:+51392103 | Msa1253740:CDS |
| GTGATCAGTTCGCCGGTGGA+AGG | 0.518910 | 8_2:+51390757 | Msa1253740:CDS |
| CGAGTACCATGCATTGGTGC+TGG | 0.519290 | 8_2:-51391895 | None:intergenic |
| AGCTCCTGAAGTTATACTGC+AGG | 0.520770 | 8_2:+51392387 | Msa1253740:CDS |
| GTTCTTTCATCCATTGCTGA+TGG | 0.521395 | 8_2:+51391806 | Msa1253740:CDS |
| AAATCAAGGTGGGGAAGTGA+AGG | 0.521806 | 8_2:+51393871 | Msa1253740:CDS |
| AAAGTCAATAATGTTGAAGA+GGG | 0.523570 | 8_2:-51393927 | None:intergenic |
| AGGTGGATACCATGCTGTCC+GGG | 0.530748 | 8_2:+51390731 | Msa1253740:CDS |
| TTGCTTTCGAGCTTGCCACT+GGG | 0.531169 | 8_2:+51392452 | Msa1253740:CDS |
| GGATCACCTTGCCCTGATGA+TGG | 0.535748 | 8_2:+51393324 | Msa1253740:intron |
| AGCAACCTTAAAATCAAGGT+GGG | 0.536200 | 8_2:+51393861 | Msa1253740:CDS |
| AGGATTTCTTCGACAGACAC+GGG | 0.536846 | 8_2:+51393595 | Msa1253740:CDS |
| TTGGGCTGATAAGCCATTTG+CGG | 0.537617 | 8_2:+51392339 | Msa1253740:CDS |
| TAGCTCAGAGGAAATTGGGT+TGG | 0.539063 | 8_2:+51390784 | Msa1253740:CDS |
| TTGGTTTGGATTACTTGCAT+AGG | 0.539558 | 8_2:+51392014 | Msa1253740:CDS |
| TGTTGAAGAGGGGACTTAGA+GGG | 0.540241 | 8_2:-51393916 | None:intergenic |
| AATCAAGGTGGGGAAGTGAA+GGG | 0.549534 | 8_2:+51393872 | Msa1253740:exon |
| ATGTTATTTACTCCCAAAGT+CGG | 0.550928 | 8_2:+51392478 | Msa1253740:CDS |
| GATTACTTGCATAGGGAACA+TGG | 0.550939 | 8_2:+51392022 | Msa1253740:CDS |
| TGGAGCATTGTTGAAGAGAG+AGG | 0.551987 | 8_2:+51390478 | Msa1253740:five_prime_UTR |
| CAGCATGGTATCCACCTTTG+CGG | 0.556107 | 8_2:-51390725 | None:intergenic |
| GTCGGTGATCAGTTCGCCGG+TGG | 0.559099 | 8_2:+51390753 | Msa1253740:CDS |
| AAAAGTCAATAATGTTGAAG+AGG | 0.559375 | 8_2:-51393928 | None:intergenic |
| ATCAAGGTGGGGAAGTGAAG+GGG | 0.562315 | 8_2:+51393873 | Msa1253740:exon |
| TGAAGGGGCGCCATCAGCAA+TGG | 0.565495 | 8_2:-51391816 | None:intergenic |
| GTTGAAAAGGAGAGCAAGGA+GGG | 0.566829 | 8_2:+51392195 | Msa1253740:CDS |
| TCTGGACAAAGAGCTTCTAT+GGG | 0.567262 | 8_2:+51392232 | Msa1253740:CDS |
| CGGCGAACTGATCACCGACC+CGG | 0.567799 | 8_2:-51390749 | None:intergenic |
| AAGGATTTCTTCGACAGACA+CGG | 0.569862 | 8_2:+51393594 | Msa1253740:CDS |
| GGCTTTGATTCCTACCGCAA+AGG | 0.573918 | 8_2:+51390711 | Msa1253740:CDS |
| ATCTCCCTGACTTTATTCAT+CGG | 0.573932 | 8_2:-51391974 | None:intergenic |
| ATGGTATCCACCTTTGCGGT+AGG | 0.574591 | 8_2:-51390721 | None:intergenic |
| GGATTGAGAACATACATCGT+TGG | 0.574635 | 8_2:-51390844 | None:intergenic |
| GCTTTGAGACCTCATGGAGG+AGG | 0.574786 | 8_2:-51394119 | None:intergenic |
| GTGTCTGTCGAAGAAATCCT+TGG | 0.579045 | 8_2:-51393592 | None:intergenic |
| ATTCTGATAGAAATATTGAT+GGG | 0.582335 | 8_2:+51392275 | Msa1253740:CDS |
| TCCAAGAAGTTCCATCATCA+GGG | 0.582922 | 8_2:-51393335 | None:intergenic |
| GATCTAACAGGGTCTTTCGC+CGG | 0.591268 | 8_2:-51392100 | None:intergenic |
| TTTACTCCCAAAGTCGGACA+AGG | 0.591377 | 8_2:+51392484 | Msa1253740:CDS |
| GAAACTCGAGTACCATGCAT+TGG | 0.591874 | 8_2:-51391901 | None:intergenic |
| TCATCGGAAGACCTTTGTAA+CGG | 0.595143 | 8_2:-51391958 | None:intergenic |
| CGGGTCGGTGATCAGTTCGC+CGG | 0.595542 | 8_2:+51390750 | Msa1253740:CDS |
| TAGGACCTGTGTGCTTAAAG+TGG | 0.596811 | 8_2:-51391868 | None:intergenic |
| GGGTCTGAAGATGATGATGA+AGG | 0.603847 | 8_2:+51390690 | Msa1253740:CDS |
| GGATACCATGCTGTCCGGGT+CGG | 0.605762 | 8_2:+51390735 | Msa1253740:CDS |
| TTTAAGCACACAGGTCCTAA+CGG | 0.605824 | 8_2:+51391872 | Msa1253740:CDS |
| CTGAGCTATGTACCTTCCAC+CGG | 0.605904 | 8_2:-51390769 | None:intergenic |
| AGACCACATATCGACGGAGA+AGG | 0.607795 | 8_2:-51392419 | None:intergenic |
| AGTATCAAAAGCAAGCCAAA+CGG | 0.608489 | 8_2:-51390820 | None:intergenic |
| AATGAGAAATGAATCTAGTG+TGG | 0.608814 | 8_2:+51393818 | Msa1253740:CDS |
| GCTCAGAGGAAATTGGGTTG+GGG | 0.614301 | 8_2:+51390786 | Msa1253740:CDS |
| CCTGAAGTTATACTGCAGGC+TGG | 0.616462 | 8_2:+51392391 | Msa1253740:CDS |
| GTCAGATACAACCGTTACAA+AGG | 0.617545 | 8_2:+51391947 | Msa1253740:CDS |
| TGCTTTCGAGCTTGCCACTG+GGG | 0.622478 | 8_2:+51392453 | Msa1253740:CDS |
| GATCACCGACCCGGACAGCA+TGG | 0.622696 | 8_2:-51390740 | None:intergenic |
| TTTGATTCCTACCGCAAAGG+TGG | 0.622862 | 8_2:+51390714 | Msa1253740:CDS |
| GGGAGACTCCCGATCTAACA+GGG | 0.627241 | 8_2:-51392111 | None:intergenic |
| TAACGGCCAGCACCAATGCA+TGG | 0.636403 | 8_2:+51391889 | Msa1253740:CDS |
| GAAGTTCCATCATCAGGGCA+AGG | 0.636676 | 8_2:-51393330 | None:intergenic |
| CTCAGGCCTCTCTAAAATCG+GGG | 0.638151 | 8_2:-51392131 | None:intergenic |
| TCGGGTGCAAAATCAAGAAG+AGG | 0.638735 | 8_2:-51393726 | None:intergenic |
| GTGTATATGACATTCATCCA+AGG | 0.639970 | 8_2:+51394080 | Msa1253740:three_prime_UTR |
| ATCGACCACTTTAAGCACAC+AGG | 0.642901 | 8_2:+51391863 | Msa1253740:CDS |
| GCAACCTTAAAATCAAGGTG+GGG | 0.643577 | 8_2:+51393862 | Msa1253740:CDS |
| AGCAAAAGACCACATATCGA+CGG | 0.644032 | 8_2:-51392425 | None:intergenic |
| GGTGGGAACACTACCTTCCG+GGG | 0.647201 | 8_2:-51393364 | None:intergenic |
| AAGCAACCTTAAAATCAAGG+TGG | 0.649106 | 8_2:+51393860 | Msa1253740:CDS |
| GGACAAAGAGCTTCTATGGG+AGG | 0.655170 | 8_2:+51392235 | Msa1253740:CDS |
| TCTTGGAAAGATGCCCCGGA+AGG | 0.655745 | 8_2:+51393351 | Msa1253740:CDS |
| GGGATCTCAAAAGGATTCGG+AGG | 0.658136 | 8_2:+51393616 | Msa1253740:CDS |
| GGATTTCTTCGACAGACACG+GGG | 0.676658 | 8_2:+51393596 | Msa1253740:CDS |
| TGAGGGAAACATAAACGGCA+CGG | 0.677311 | 8_2:+51392150 | Msa1253740:CDS |
| TCTTCCGATGAATAAAGTCA+GGG | 0.678520 | 8_2:+51391970 | Msa1253740:CDS |
| GAAAAGGAGAGCAAGGAGGG+CGG | 0.678748 | 8_2:+51392198 | Msa1253740:CDS |
| GATTGATGTTAGATGCAAAG+TGG | 0.684911 | 8_2:+51392297 | Msa1253740:CDS |
| AAGTCAATAATGTTGAAGAG+GGG | 0.686144 | 8_2:-51393926 | None:intergenic |
| AGTTGAAAAGGAGAGCAAGG+AGG | 0.686372 | 8_2:+51392194 | Msa1253740:CDS |
| TACTGCAGGAGTGAAATCCA+AGG | 0.690749 | 8_2:+51393575 | Msa1253740:CDS |
| AGTAAATAACATATCCCCAG+TGG | 0.717830 | 8_2:-51392467 | None:intergenic |
| GTGGAAGGTACATAGCTCAG+AGG | 0.720598 | 8_2:+51390772 | Msa1253740:CDS |
| TTAGCTTTGAGACCTCATGG+AGG | 0.773888 | 8_2:-51394122 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAGATTTACATTTTTTTAT+TGG | + | chr8_2:51393988-51394007 | Msa1253740:three_prime_UTR | 10.0% |
| !! | ATGAAATTATGAGATTATTA+AGG | - | chr8_2:51390556-51390575 | None:intergenic | 15.0% |
| !!! | TTTTTGTTTATAATAGTGAT+TGG | + | chr8_2:51391060-51391079 | Msa1253740:intron | 15.0% |
| !!! | ATTTTTTGTGTAATTTTGAA+TGG | + | chr8_2:51391090-51391109 | Msa1253740:intron | 15.0% |
| !! | AATGTAAATCTTATTGAATT+TGG | - | chr8_2:51393981-51394000 | None:intergenic | 15.0% |
| !! | CAAAACAAATCTTTATCTTT+AGG | - | chr8_2:51390868-51390887 | None:intergenic | 20.0% |
| !! | AGATTGCAATAATACAAAAA+GGG | - | chr8_2:51390895-51390914 | None:intergenic | 20.0% |
| !! | TATTCAATGAACCTAAAAAA+TGG | - | chr8_2:51390971-51390990 | None:intergenic | 20.0% |
| !! | AATTTGATATATGTGATGTT+TGG | + | chr8_2:51391132-51391151 | Msa1253740:intron | 20.0% |
| !!! | TATTATAGGTTGATAATGAT+TGG | + | chr8_2:51391461-51391480 | Msa1253740:intron | 20.0% |
| !!! | ATTATAGGTTGATAATGATT+GGG | + | chr8_2:51391462-51391481 | Msa1253740:intron | 20.0% |
| !!! | TAAATAGGTGTTAATTTTGT+TGG | + | chr8_2:51391555-51391574 | Msa1253740:intron | 20.0% |
| !!! | AACAAATTTTGAATTTGAAG+GGG | - | chr8_2:51391834-51391853 | None:intergenic | 20.0% |
| !!! | CAACAAATTTTGAATTTGAA+GGG | - | chr8_2:51391835-51391854 | None:intergenic | 20.0% |
| !!! | ACAACAAATTTTGAATTTGA+AGG | - | chr8_2:51391836-51391855 | None:intergenic | 20.0% |
| !! | TTATTGAGAAAAAGTTGAAA+AGG | + | chr8_2:51392182-51392201 | Msa1253740:CDS | 20.0% |
| !!! | TCAATATTTCTATCAGAATT+TGG | - | chr8_2:51392274-51392293 | None:intergenic | 20.0% |
| !! | AATTCTGATAGAAATATTGA+TGG | + | chr8_2:51392274-51392293 | Msa1253740:CDS | 20.0% |
| !! | ATTCTGATAGAAATATTGAT+GGG | + | chr8_2:51392275-51392294 | Msa1253740:CDS | 20.0% |
| !!! | TATTGAATAAACAGTCATTT+TGG | + | chr8_2:51392562-51392581 | Msa1253740:intron | 20.0% |
| !! | CTATTATATCATGTATAGTT+AGG | - | chr8_2:51392864-51392883 | None:intergenic | 20.0% |
| !!! | TAATAGTTGTTACTTTATTG+AGG | + | chr8_2:51392999-51393018 | Msa1253740:intron | 20.0% |
| !!! | TATAGTTTTGAATCTTTGAT+TGG | + | chr8_2:51393176-51393195 | Msa1253740:intron | 20.0% |
| !!! | TGATTGTGGTTTTATTTTTT+TGG | + | chr8_2:51393950-51393969 | Msa1253740:three_prime_UTR | 20.0% |
| !! | AAATTTCTGTCAAATATCTA+TGG | - | chr8_2:51394058-51394077 | None:intergenic | 20.0% |
| ! | CAGATTGCAATAATACAAAA+AGG | - | chr8_2:51390896-51390915 | None:intergenic | 25.0% |
| !! | TTGTGTAATTTTGAATGGAT+CGG | + | chr8_2:51391095-51391114 | Msa1253740:intron | 25.0% |
| ! | ATCAGAAATAAATGTGGATT+TGG | + | chr8_2:51391183-51391202 | Msa1253740:intron | 25.0% |
| ! | CATTTCAAAATCGGTAAATT+AGG | - | chr8_2:51391294-51391313 | None:intergenic | 25.0% |
| !!! | TCTGAGTTTCGATTTTAATT+TGG | + | chr8_2:51391615-51391634 | Msa1253740:intron | 25.0% |
| ! | ATAGCTATATGTTAAGACTT+AGG | + | chr8_2:51391639-51391658 | Msa1253740:intron | 25.0% |
| ! | TAGCTATATGTTAAGACTTA+GGG | + | chr8_2:51391640-51391659 | Msa1253740:intron | 25.0% |
| ! | GATATTTGACAAGAAATAAG+AGG | - | chr8_2:51391689-51391708 | None:intergenic | 25.0% |
| !!! | ATTTGTCAATGCATTTTGAT+TGG | + | chr8_2:51391995-51392014 | Msa1253740:CDS | 25.0% |
| !!! | GAAGAACATTTTCAAGTTTT+AGG | - | chr8_2:51392063-51392082 | None:intergenic | 25.0% |
| ! | AAAACTTGAAAATGTTCTTC+TGG | + | chr8_2:51392063-51392082 | Msa1253740:CDS | 25.0% |
| !!! | GAGGATGTTTTTTGTAATTT+TGG | - | chr8_2:51392631-51392650 | None:intergenic | 25.0% |
| ! | ATCTTCTGTTAGTAATTTGA+TGG | - | chr8_2:51392674-51392693 | None:intergenic | 25.0% |
| ! | TAAGTTCATATTTGACAGTT+CGG | - | chr8_2:51392919-51392938 | None:intergenic | 25.0% |
| ! | GTTAATGAGAAATCAATTCA+AGG | + | chr8_2:51393036-51393055 | Msa1253740:intron | 25.0% |
| ! | CTTCAATGAATTCCATTATT+GGG | - | chr8_2:51393067-51393086 | None:intergenic | 25.0% |
| ! | TCTTCAATGAATTCCATTAT+TGG | - | chr8_2:51393068-51393087 | None:intergenic | 25.0% |
| ! | GCAAAAGAAGAAACATATAA+TGG | - | chr8_2:51393226-51393245 | None:intergenic | 25.0% |
| ! | ATTTAATACTTGCATGTTAC+AGG | + | chr8_2:51393548-51393567 | Msa1253740:intron | 25.0% |
| !!! | TCAATCAATAGTTTGTTAAG+AGG | - | chr8_2:51393654-51393673 | None:intergenic | 25.0% |
| ! | AATAAGCAACCTTAAAATCA+AGG | + | chr8_2:51393857-51393876 | Msa1253740:CDS | 25.0% |
| ! | AAAGTCAATAATGTTGAAGA+GGG | - | chr8_2:51393930-51393949 | None:intergenic | 25.0% |
| ! | AAAAGTCAATAATGTTGAAG+AGG | - | chr8_2:51393931-51393950 | None:intergenic | 25.0% |
| !!! | ACATTATTGACTTTTGATTG+TGG | + | chr8_2:51393936-51393955 | Msa1253740:three_prime_UTR | 25.0% |
| !!! | GTGGTTTTATTTTTTTGGTT+TGG | + | chr8_2:51393955-51393974 | Msa1253740:three_prime_UTR | 25.0% |
| !! | ACAGTTGAAAAAGCATTGAA+AGG | + | chr8_2:51390427-51390446 | Msa1253740:five_prime_UTR | 30.0% |
| AAGAGAAAGAGAGAAAAAAG+TGG | + | chr8_2:51390458-51390477 | Msa1253740:five_prime_UTR | 30.0% | |
| ! | GATTGTTGTTGTTCTATTTG+TGG | - | chr8_2:51390525-51390544 | None:intergenic | 30.0% |
| !! | GTTTTGTATGCTTTAAATGC+TGG | + | chr8_2:51390932-51390951 | Msa1253740:intron | 30.0% |
| !!! | GTCGCAAAAAACCATTTTTT+AGG | + | chr8_2:51390957-51390976 | Msa1253740:intron | 30.0% |
| ! | TAATTTTGAATGGATCGGAT+TGG | + | chr8_2:51391100-51391119 | Msa1253740:intron | 30.0% |
| ATGTGATGTTTGGATTTGAA+TGG | + | chr8_2:51391142-51391161 | Msa1253740:intron | 30.0% | |
| TTGGATTTGAATGGTGAAAT+TGG | + | chr8_2:51391151-51391170 | Msa1253740:intron | 30.0% | |
| ATGGTCATCAGAAATAAATG+TGG | + | chr8_2:51391177-51391196 | Msa1253740:intron | 30.0% | |
| TTAAGATATTCTCCAAATGC+AGG | - | chr8_2:51391213-51391232 | None:intergenic | 30.0% | |
| GACAACTCACATTTCAAAAT+CGG | - | chr8_2:51391303-51391322 | None:intergenic | 30.0% | |
| ATCAACCTATAATAGCTTAG+AGG | - | chr8_2:51391455-51391474 | None:intergenic | 30.0% | |
| ! | TGCGTTATGATCCTTTTTAA+TGG | + | chr8_2:51391493-51391512 | Msa1253740:intron | 30.0% |
| ! | TCCTTTTTAATGGTAACACT+TGG | + | chr8_2:51391503-51391522 | Msa1253740:intron | 30.0% |
| ACCAAGTGTTACCATTAAAA+AGG | - | chr8_2:51391507-51391526 | None:intergenic | 30.0% | |
| GCAATTGTGCATCTATAAAT+AGG | + | chr8_2:51391540-51391559 | Msa1253740:intron | 30.0% | |
| AGCTATATGTTAAGACTTAG+GGG | + | chr8_2:51391641-51391660 | Msa1253740:intron | 30.0% | |
| !!! | TCAATGCATTTTGATTGGTT+TGG | + | chr8_2:51392000-51392019 | Msa1253740:CDS | 30.0% |
| ! | ATGTTATTTACTCCCAAAGT+CGG | + | chr8_2:51392478-51392497 | Msa1253740:CDS | 30.0% |
| !!! | TTGTAATTTTGGCTAATTCG+AGG | - | chr8_2:51392620-51392639 | None:intergenic | 30.0% |
| ! | TTTTGGTCGTTAAATCTGTT+AGG | - | chr8_2:51392751-51392770 | None:intergenic | 30.0% |
| GAACTGTCAAATATGAACTT+AGG | + | chr8_2:51392918-51392937 | Msa1253740:intron | 30.0% | |
| AATGAGAAATCAATTCAAGG+AGG | + | chr8_2:51393039-51393058 | Msa1253740:intron | 30.0% | |
| TATGTCAGCTTGACATTAAA+TGG | - | chr8_2:51393106-51393125 | None:intergenic | 30.0% | |
| GAAGAAACATATAATGGTCT+TGG | - | chr8_2:51393220-51393239 | None:intergenic | 30.0% | |
| ! | AACCAATCTTTGCATTTTGT+CGG | + | chr8_2:51393296-51393315 | Msa1253740:intron | 30.0% |
| TCGTATTAAATAGTGTAACG+CGG | - | chr8_2:51393415-51393434 | None:intergenic | 30.0% | |
| AAATTTGCCACAGTTAGTTA+CGG | - | chr8_2:51393532-51393551 | None:intergenic | 30.0% | |
| GATTCATTTCTCATTTCATC+AGG | - | chr8_2:51393813-51393832 | None:intergenic | 30.0% | |
| AATGAGAAATGAATCTAGTG+TGG | + | chr8_2:51393818-51393837 | Msa1253740:CDS | 30.0% | |
| AAGTCAATAATGTTGAAGAG+GGG | - | chr8_2:51393929-51393948 | None:intergenic | 30.0% | |
| ! | ATGTCTTGTTCTTCTTCATC+TGG | + | chr8_2:51390669-51390688 | Msa1253740:CDS | 35.0% |
| ! | TGTCTTGTTCTTCTTCATCT+GGG | + | chr8_2:51390670-51390689 | Msa1253740:CDS | 35.0% |
| TACATAGCTCAGAGGAAATT+GGG | + | chr8_2:51390780-51390799 | Msa1253740:CDS | 35.0% | |
| AGTATCAAAAGCAAGCCAAA+CGG | - | chr8_2:51390823-51390842 | None:intergenic | 35.0% | |
| ! | TTGTATGCTTTAAATGCTGG+TGG | + | chr8_2:51390935-51390954 | Msa1253740:intron | 35.0% |
| TGAATGGTGAAATTGGTGAA+TGG | + | chr8_2:51391158-51391177 | Msa1253740:intron | 35.0% | |
| ! | AGTTTTGCATCTTGTGTCAT+TGG | + | chr8_2:51391241-51391260 | Msa1253740:intron | 35.0% |
| GAGACAAATCTATGCAATCA+AGG | - | chr8_2:51391393-51391412 | None:intergenic | 35.0% | |
| AGTTTATAGTGAGCTGCATA+TGG | + | chr8_2:51391580-51391599 | Msa1253740:intron | 35.0% | |
| AAAATCGAAACTCAGAACCA+TGG | - | chr8_2:51391611-51391630 | None:intergenic | 35.0% | |
| TCTTCCGATGAATAAAGTCA+GGG | + | chr8_2:51391970-51391989 | Msa1253740:CDS | 35.0% | |
| ATCTCCCTGACTTTATTCAT+CGG | - | chr8_2:51391977-51391996 | None:intergenic | 35.0% | |
| !! | TTGGTTTGGATTACTTGCAT+AGG | + | chr8_2:51392014-51392033 | Msa1253740:CDS | 35.0% |
| ! | TGGTTTGGATTACTTGCATA+GGG | + | chr8_2:51392015-51392034 | Msa1253740:CDS | 35.0% |
| AAAAGTTGAAAAGGAGAGCA+AGG | + | chr8_2:51392191-51392210 | Msa1253740:CDS | 35.0% | |
| GATTGATGTTAGATGCAAAG+TGG | + | chr8_2:51392297-51392316 | Msa1253740:CDS | 35.0% | |
| !! | AGATGCAAAGTGGTTGATTT+TGG | + | chr8_2:51392307-51392326 | Msa1253740:CDS | 35.0% |
| !! | TTGATTTTGGAAATGCGTGT+TGG | + | chr8_2:51392320-51392339 | Msa1253740:CDS | 35.0% |
| !! | TGATTTTGGAAATGCGTGTT+GGG | + | chr8_2:51392321-51392340 | Msa1253740:CDS | 35.0% |
| AGTAAATAACATATCCCCAG+TGG | - | chr8_2:51392470-51392489 | None:intergenic | 35.0% | |
| ! | TTTTGGTCCTTGAATGTGTT+AGG | + | chr8_2:51392579-51392598 | Msa1253740:intron | 35.0% |
| TAACGACCAAAATGAGTGTT+CGG | + | chr8_2:51392759-51392778 | Msa1253740:intron | 35.0% | |
| ! | CAATATCCGAACACTCATTT+TGG | - | chr8_2:51392768-51392787 | None:intergenic | 35.0% |
| GGGTCATATGTTCATATGAA+AGG | + | chr8_2:51392790-51392809 | Msa1253740:intron | 35.0% | |
| TCATATGAAAGGAAAGCTTC+TGG | + | chr8_2:51392801-51392820 | Msa1253740:intron | 35.0% | |
| ATTGAAGATACCTGTGTTAC+CGG | + | chr8_2:51393080-51393099 | Msa1253740:intron | 35.0% | |
| AACCGACAAAATGCAAAGAT+TGG | - | chr8_2:51393301-51393320 | None:intergenic | 35.0% | |
| ATAACAATGACATGCAGAGA+CGG | - | chr8_2:51393388-51393407 | None:intergenic | 35.0% | |
| ! | TACGAAGTGTTCTCAAATAG+TGG | + | chr8_2:51393430-51393449 | Msa1253740:intron | 35.0% |
| TGAATCTAGTGTGGAAAAAG+TGG | + | chr8_2:51393827-51393846 | Msa1253740:CDS | 35.0% | |
| AAGCAACCTTAAAATCAAGG+TGG | + | chr8_2:51393860-51393879 | Msa1253740:CDS | 35.0% | |
| AGCAACCTTAAAATCAAGGT+GGG | + | chr8_2:51393861-51393880 | Msa1253740:CDS | 35.0% | |
| GTGTATATGACATTCATCCA+AGG | + | chr8_2:51394080-51394099 | Msa1253740:three_prime_UTR | 35.0% | |
| GAAAACAAAAAGACTTGCCT+TGG | - | chr8_2:51394100-51394119 | None:intergenic | 35.0% | |
| GTACATAGCTCAGAGGAAAT+TGG | + | chr8_2:51390779-51390798 | Msa1253740:CDS | 40.0% | |
| GGATTGAGAACATACATCGT+TGG | - | chr8_2:51390847-51390866 | None:intergenic | 40.0% | |
| !!! | GGATTTGGTTTTCCTGCATT+TGG | + | chr8_2:51391198-51391217 | Msa1253740:intron | 40.0% |
| GTGAGTTGTCTGATCTTGAT+TGG | + | chr8_2:51391313-51391332 | Msa1253740:intron | 40.0% | |
| GTTGTCTGATCTTGATTGGA+TGG | + | chr8_2:51391317-51391336 | Msa1253740:intron | 40.0% | |
| ! | GGATGGTCTGAGATGTATAA+TGG | + | chr8_2:51391334-51391353 | Msa1253740:intron | 40.0% |
| ! | TGGTCTGAGATGTATAATGG+TGG | + | chr8_2:51391337-51391356 | Msa1253740:intron | 40.0% |
| TGGAGAATTTAGCATATGCG+TGG | + | chr8_2:51391357-51391376 | Msa1253740:intron | 40.0% | |
| TTTAGCATATGCGTGGAATC+TGG | + | chr8_2:51391364-51391383 | Msa1253740:intron | 40.0% | |
| ATAGATTTGTCTCGTTGCAG+AGG | + | chr8_2:51391400-51391419 | Msa1253740:intron | 40.0% | |
| TCGCACCTCTAAGCTATTAT+AGG | + | chr8_2:51391447-51391466 | Msa1253740:intron | 40.0% | |
| GTTCTTTCATCCATTGCTGA+TGG | + | chr8_2:51391806-51391825 | Msa1253740:CDS | 40.0% | |
| GCTTAAAGTGGTCGATCAAT+TGG | - | chr8_2:51391859-51391878 | None:intergenic | 40.0% | |
| TTTAAGCACACAGGTCCTAA+CGG | + | chr8_2:51391872-51391891 | Msa1253740:CDS | 40.0% | |
| GTCAGATACAACCGTTACAA+AGG | + | chr8_2:51391947-51391966 | Msa1253740:CDS | 40.0% | |
| TCATCGGAAGACCTTTGTAA+CGG | - | chr8_2:51391961-51391980 | None:intergenic | 40.0% | |
| GTCTTCCGATGAATAAAGTC+AGG | + | chr8_2:51391969-51391988 | Msa1253740:CDS | 40.0% | |
| GATTACTTGCATAGGGAACA+TGG | + | chr8_2:51392022-51392041 | Msa1253740:CDS | 40.0% | |
| ! | TCTGGTTTCTACTATCGATC+CGG | + | chr8_2:51392081-51392100 | Msa1253740:CDS | 40.0% |
| TTCTGGACAAAGAGCTTCTA+TGG | + | chr8_2:51392231-51392250 | Msa1253740:CDS | 40.0% | |
| TCTGGACAAAGAGCTTCTAT+GGG | + | chr8_2:51392232-51392251 | Msa1253740:CDS | 40.0% | |
| GTCTGAATTTCTTCCGCAAA+TGG | - | chr8_2:51392355-51392374 | None:intergenic | 40.0% | |
| AGCAAAAGACCACATATCGA+CGG | - | chr8_2:51392428-51392447 | None:intergenic | 40.0% | |
| CTAAAACCTTGTCCGACTTT+GGG | - | chr8_2:51392493-51392512 | None:intergenic | 40.0% | |
| GTTAGCACCTAACACATTCA+AGG | - | chr8_2:51392589-51392608 | None:intergenic | 40.0% | |
| AATGAGTGTTCGGATATTGC+AGG | + | chr8_2:51392769-51392788 | Msa1253740:intron | 40.0% | |
| ATGAGTGTTCGGATATTGCA+GGG | + | chr8_2:51392770-51392789 | Msa1253740:intron | 40.0% | |
| !! | AGGAAAGCTTCTGGAACAAT+TGG | + | chr8_2:51392810-51392829 | Msa1253740:intron | 40.0% |
| TCAGCTTGACATTAAATGGC+CGG | - | chr8_2:51393102-51393121 | None:intergenic | 40.0% | |
| TCCAAGAAGTTCCATCATCA+GGG | - | chr8_2:51393338-51393357 | None:intergenic | 40.0% | |
| TTCCAAGAAGTTCCATCATC+AGG | - | chr8_2:51393339-51393358 | None:intergenic | 40.0% | |
| AGTTACGGTGTAGTCAATCA+TGG | - | chr8_2:51393517-51393536 | None:intergenic | 40.0% | |
| AAGGATTTCTTCGACAGACA+CGG | + | chr8_2:51393594-51393613 | Msa1253740:CDS | 40.0% | |
| ! | GGATTCGGAGGCTAAAATTT+TGG | + | chr8_2:51393628-51393647 | Msa1253740:CDS | 40.0% |
| AGTGTGGAAAAAGTGGATGT+TGG | + | chr8_2:51393834-51393853 | Msa1253740:CDS | 40.0% | |
| GCAACCTTAAAATCAAGGTG+GGG | + | chr8_2:51393862-51393881 | Msa1253740:CDS | 40.0% | |
| ! | ACTTCCCCACCTTGATTTTA+AGG | - | chr8_2:51393869-51393888 | None:intergenic | 40.0% |
| !!! | TTTTGTTTTCCTCCTCCATG+AGG | + | chr8_2:51394110-51394129 | Msa1253740:three_prime_UTR | 40.0% |
| !! | TGGAGCATTGTTGAAGAGAG+AGG | + | chr8_2:51390478-51390497 | Msa1253740:five_prime_UTR | 45.0% |
| ! | GGGTCTGAAGATGATGATGA+AGG | + | chr8_2:51390690-51390709 | Msa1253740:CDS | 45.0% |
| TTTGATTCCTACCGCAAAGG+TGG | + | chr8_2:51390714-51390733 | Msa1253740:CDS | 45.0% | |
| TAGCTCAGAGGAAATTGGGT+TGG | + | chr8_2:51390784-51390803 | Msa1253740:CDS | 45.0% | |
| AGCTCAGAGGAAATTGGGTT+GGG | + | chr8_2:51390785-51390804 | Msa1253740:CDS | 45.0% | |
| AGCTGCATATGGAAACACCA+TGG | + | chr8_2:51391591-51391610 | Msa1253740:intron | 45.0% | |
| ! | TAAGACTTAGGGGTCTTGTG+CGG | + | chr8_2:51391651-51391670 | Msa1253740:intron | 45.0% |
| ATCGACCACTTTAAGCACAC+AGG | + | chr8_2:51391863-51391882 | Msa1253740:CDS | 45.0% | |
| TAGGACCTGTGTGCTTAAAG+TGG | - | chr8_2:51391871-51391890 | None:intergenic | 45.0% | |
| GAAACTCGAGTACCATGCAT+TGG | - | chr8_2:51391904-51391923 | None:intergenic | 45.0% | |
| TGCATGGTACTCGAGTTTCT+TGG | + | chr8_2:51391905-51391924 | Msa1253740:CDS | 45.0% | |
| AGGCCTGAGGGAAACATAAA+CGG | + | chr8_2:51392145-51392164 | Msa1253740:CDS | 45.0% | |
| TGAGGGAAACATAAACGGCA+CGG | + | chr8_2:51392150-51392169 | Msa1253740:CDS | 45.0% | |
| AGTTGAAAAGGAGAGCAAGG+AGG | + | chr8_2:51392194-51392213 | Msa1253740:CDS | 45.0% | |
| GTTGAAAAGGAGAGCAAGGA+GGG | + | chr8_2:51392195-51392214 | Msa1253740:CDS | 45.0% | |
| AGGGCGGTAGCTAAAATTTC+TGG | + | chr8_2:51392214-51392233 | Msa1253740:CDS | 45.0% | |
| AAGAGCTTCTATGGGAGGAA+TGG | + | chr8_2:51392240-51392259 | Msa1253740:CDS | 45.0% | |
| AGAGCTTCTATGGGAGGAAT+GGG | + | chr8_2:51392241-51392260 | Msa1253740:CDS | 45.0% | |
| TTGGGCTGATAAGCCATTTG+CGG | + | chr8_2:51392339-51392358 | Msa1253740:CDS | 45.0% | |
| AGCTCCTGAAGTTATACTGC+AGG | + | chr8_2:51392387-51392406 | Msa1253740:CDS | 45.0% | |
| ATTCCTTCTCCGTCGATATG+TGG | + | chr8_2:51392416-51392435 | Msa1253740:CDS | 45.0% | |
| TTTACTCCCAAAGTCGGACA+AGG | + | chr8_2:51392484-51392503 | Msa1253740:CDS | 45.0% | |
| GCTAAAACCTTGTCCGACTT+TGG | - | chr8_2:51392494-51392513 | None:intergenic | 45.0% | |
| CCAAACTAACGAGACATTGG+AGG | - | chr8_2:51392650-51392669 | None:intergenic | 45.0% | |
| CCTCCAATGTCTCGTTAGTT+TGG | + | chr8_2:51392647-51392666 | Msa1253740:intron | 45.0% | |
| GGACCAAACTAACGAGACAT+TGG | - | chr8_2:51392653-51392672 | None:intergenic | 45.0% | |
| !! | TTCAAGGAGGCACCCAATAA+TGG | + | chr8_2:51393052-51393071 | Msa1253740:intron | 45.0% |
| CATTAAATGGCCGGTAACAC+AGG | - | chr8_2:51393093-51393112 | None:intergenic | 45.0% | |
| CTTTGTGAGTCTCTACACCT+CGG | + | chr8_2:51393258-51393277 | Msa1253740:intron | 45.0% | |
| TTATCCTGACATGCTATCCG+AGG | - | chr8_2:51393278-51393297 | None:intergenic | 45.0% | |
| !! | CTTTGCATTTTGTCGGTTGC+AGG | + | chr8_2:51393303-51393322 | Msa1253740:intron | 45.0% |
| AACTTCTTGGAAAGATGCCC+CGG | + | chr8_2:51393347-51393366 | Msa1253740:CDS | 45.0% | |
| GACTACACCGTAACTAACTG+TGG | + | chr8_2:51393522-51393541 | Msa1253740:intron | 45.0% | |
| ATGTTACAGGTTGCTACTGC+AGG | + | chr8_2:51393561-51393580 | Msa1253740:intron | 45.0% | |
| TACTGCAGGAGTGAAATCCA+AGG | + | chr8_2:51393575-51393594 | Msa1253740:CDS | 45.0% | |
| GTGTCTGTCGAAGAAATCCT+TGG | - | chr8_2:51393595-51393614 | None:intergenic | 45.0% | |
| AGGATTTCTTCGACAGACAC+GGG | + | chr8_2:51393595-51393614 | Msa1253740:CDS | 45.0% | |
| ACGGGGATCTCAAAAGGATT+CGG | + | chr8_2:51393613-51393632 | Msa1253740:CDS | 45.0% | |
| TCGGGTGCAAAATCAAGAAG+AGG | - | chr8_2:51393729-51393748 | None:intergenic | 45.0% | |
| ! | AGTCCTTTTCCATGAGCCAA+GGG | - | chr8_2:51393785-51393804 | None:intergenic | 45.0% |
| AAATCAAGGTGGGGAAGTGA+AGG | + | chr8_2:51393871-51393890 | Msa1253740:CDS | 45.0% | |
| AATCAAGGTGGGGAAGTGAA+GGG | + | chr8_2:51393872-51393891 | Msa1253740:exon | 45.0% | |
| TGTTGAAGAGGGGACTTAGA+GGG | - | chr8_2:51393919-51393938 | None:intergenic | 45.0% | |
| ATGTTGAAGAGGGGACTTAG+AGG | - | chr8_2:51393920-51393939 | None:intergenic | 45.0% | |
| !! | TTAGCTTTGAGACCTCATGG+AGG | - | chr8_2:51394125-51394144 | None:intergenic | 45.0% |
| !! | CTCTTAGCTTTGAGACCTCA+TGG | - | chr8_2:51394128-51394147 | None:intergenic | 45.0% |
| ! | GGCTTTGATTCCTACCGCAA+AGG | + | chr8_2:51390711-51390730 | Msa1253740:CDS | 50.0% |
| ATGGTATCCACCTTTGCGGT+AGG | - | chr8_2:51390724-51390743 | None:intergenic | 50.0% | |
| CAGCATGGTATCCACCTTTG+CGG | - | chr8_2:51390728-51390747 | None:intergenic | 50.0% | |
| AAGGTGGATACCATGCTGTC+CGG | + | chr8_2:51390730-51390749 | Msa1253740:CDS | 50.0% | |
| CTGAGCTATGTACCTTCCAC+CGG | - | chr8_2:51390772-51390791 | None:intergenic | 50.0% | |
| ! | GTGGAAGGTACATAGCTCAG+AGG | + | chr8_2:51390772-51390791 | Msa1253740:CDS | 50.0% |
| ! | GCTCAGAGGAAATTGGGTTG+GGG | + | chr8_2:51390786-51390805 | Msa1253740:CDS | 50.0% |
| ! | GGGGTCAGTTTTCAACCGTT+TGG | + | chr8_2:51390805-51390824 | Msa1253740:CDS | 50.0% |
| GTCTCGTTGCAGAGGACTTA+AGG | + | chr8_2:51391408-51391427 | Msa1253740:intron | 50.0% | |
| ! | CAAACTGCGCTGCACTTTTC+TGG | - | chr8_2:51391760-51391779 | None:intergenic | 50.0% |
| GATCTAACAGGGTCTTTCGC+CGG | - | chr8_2:51392103-51392122 | None:intergenic | 50.0% | |
| GGCGAAAGACCCTGTTAGAT+CGG | + | chr8_2:51392102-51392121 | Msa1253740:CDS | 50.0% | |
| GCGAAAGACCCTGTTAGATC+GGG | + | chr8_2:51392103-51392122 | Msa1253740:CDS | 50.0% | |
| !! | GAGTCTCCCCGATTTTAGAG+AGG | + | chr8_2:51392125-51392144 | Msa1253740:CDS | 50.0% |
| !! | CTCAGGCCTCTCTAAAATCG+GGG | - | chr8_2:51392134-51392153 | None:intergenic | 50.0% |
| !! | CCTCAGGCCTCTCTAAAATC+GGG | - | chr8_2:51392135-51392154 | None:intergenic | 50.0% |
| !! | CCCTCAGGCCTCTCTAAAAT+CGG | - | chr8_2:51392136-51392155 | None:intergenic | 50.0% |
| !! | CCGATTTTAGAGAGGCCTGA+GGG | + | chr8_2:51392133-51392152 | Msa1253740:CDS | 50.0% |
| !! | GTGCCGTTTATGTTTCCCTC+AGG | - | chr8_2:51392151-51392170 | None:intergenic | 50.0% |
| GGACAAAGAGCTTCTATGGG+AGG | + | chr8_2:51392235-51392254 | Msa1253740:CDS | 50.0% | |
| CCAGCCTGCAGTATAACTTC+AGG | - | chr8_2:51392394-51392413 | None:intergenic | 50.0% | |
| CCTGAAGTTATACTGCAGGC+TGG | + | chr8_2:51392391-51392410 | Msa1253740:CDS | 50.0% | |
| AGACCACATATCGACGGAGA+AGG | - | chr8_2:51392422-51392441 | None:intergenic | 50.0% | |
| ATTGCTTTCGAGCTTGCCAC+TGG | + | chr8_2:51392451-51392470 | Msa1253740:CDS | 50.0% | |
| TTGCTTTCGAGCTTGCCACT+GGG | + | chr8_2:51392452-51392471 | Msa1253740:CDS | 50.0% | |
| !! | AGTCGGACAAGGTTTTAGCG+AGG | + | chr8_2:51392495-51392514 | Msa1253740:CDS | 50.0% |
| !! | ACAAGGTTTTAGCGAGGACG+AGG | + | chr8_2:51392501-51392520 | Msa1253740:CDS | 50.0% |
| TACACCTCGGATAGCATGTC+AGG | + | chr8_2:51393271-51393290 | Msa1253740:intron | 50.0% | |
| GAAGTTCCATCATCAGGGCA+AGG | - | chr8_2:51393333-51393352 | None:intergenic | 50.0% | |
| !! | GCCCTGATGATGGAACTTCT+TGG | + | chr8_2:51393334-51393353 | Msa1253740:CDS | 50.0% |
| CAATGACATGCAGAGACGGT+GGG | - | chr8_2:51393384-51393403 | None:intergenic | 50.0% | |
| ACAATGACATGCAGAGACGG+TGG | - | chr8_2:51393385-51393404 | None:intergenic | 50.0% | |
| TTTGCCACGCTGCAAAGCTA+TGG | - | chr8_2:51393467-51393486 | None:intergenic | 50.0% | |
| GGATTTCTTCGACAGACACG+GGG | + | chr8_2:51393596-51393615 | Msa1253740:CDS | 50.0% | |
| ACAGACACGGGGATCTCAAA+AGG | + | chr8_2:51393607-51393626 | Msa1253740:CDS | 50.0% | |
| GGGATCTCAAAAGGATTCGG+AGG | + | chr8_2:51393616-51393635 | Msa1253740:CDS | 50.0% | |
| TTCTGCAGTTGGTCGCTTCT+CGG | - | chr8_2:51393748-51393767 | None:intergenic | 50.0% | |
| ACACCCTTGGCTCATGGAAA+AGG | + | chr8_2:51393779-51393798 | Msa1253740:CDS | 50.0% | |
| ! | GAGTCCTTTTCCATGAGCCA+AGG | - | chr8_2:51393786-51393805 | None:intergenic | 50.0% |
| ATCAAGGTGGGGAAGTGAAG+GGG | + | chr8_2:51393873-51393892 | Msa1253740:exon | 50.0% | |
| AGGTGGATACCATGCTGTCC+GGG | + | chr8_2:51390731-51390750 | Msa1253740:CDS | 55.0% | |
| !! | ATGCATTGGTGCTGGCCGTT+AGG | - | chr8_2:51391890-51391909 | None:intergenic | 55.0% |
| TAACGGCCAGCACCAATGCA+TGG | + | chr8_2:51391889-51391908 | Msa1253740:CDS | 55.0% | |
| ! | CGAGTACCATGCATTGGTGC+TGG | - | chr8_2:51391898-51391917 | None:intergenic | 55.0% |
| GGGAGACTCCCGATCTAACA+GGG | - | chr8_2:51392114-51392133 | None:intergenic | 55.0% | |
| !! | CCCGATTTTAGAGAGGCCTG+AGG | + | chr8_2:51392132-51392151 | Msa1253740:CDS | 55.0% |
| GAAAAGGAGAGCAAGGAGGG+CGG | + | chr8_2:51392198-51392217 | Msa1253740:CDS | 55.0% | |
| TGCTTTCGAGCTTGCCACTG+GGG | + | chr8_2:51392453-51392472 | Msa1253740:CDS | 55.0% | |
| GGATCACCTTGCCCTGATGA+TGG | + | chr8_2:51393324-51393343 | Msa1253740:intron | 55.0% | |
| TCTTGGAAAGATGCCCCGGA+AGG | + | chr8_2:51393351-51393370 | Msa1253740:CDS | 55.0% | |
| ACGGTGGGAACACTACCTTC+CGG | - | chr8_2:51393369-51393388 | None:intergenic | 55.0% | |
| ! | AGCACCATAGCTTTGCAGCG+TGG | + | chr8_2:51393460-51393479 | Msa1253740:intron | 55.0% |
| TCTGCAGTTGGTCGCTTCTC+GGG | - | chr8_2:51393747-51393766 | None:intergenic | 55.0% | |
| ! | TGCAGGCACTGTTCTGCAGT+TGG | - | chr8_2:51393759-51393778 | None:intergenic | 55.0% |
| AACAGTGCCTGCAACACCCT+TGG | + | chr8_2:51393766-51393785 | Msa1253740:CDS | 55.0% | |
| !! | GCTTTGAGACCTCATGGAGG+AGG | - | chr8_2:51394122-51394141 | None:intergenic | 55.0% |
| GGATACCATGCTGTCCGGGT+CGG | + | chr8_2:51390735-51390754 | Msa1253740:CDS | 60.0% | |
| GTGATCAGTTCGCCGGTGGA+AGG | + | chr8_2:51390757-51390776 | Msa1253740:CDS | 60.0% | |
| !! | TGAAGGGGCGCCATCAGCAA+TGG | - | chr8_2:51391819-51391838 | None:intergenic | 60.0% |
| GGGGAGACTCCCGATCTAAC+AGG | - | chr8_2:51392115-51392134 | None:intergenic | 60.0% | |
| GGTGGGAACACTACCTTCCG+GGG | - | chr8_2:51393367-51393386 | None:intergenic | 60.0% | |
| CGGTGGGAACACTACCTTCC+GGG | - | chr8_2:51393368-51393387 | None:intergenic | 60.0% | |
| !! | CCATGAGCCAAGGGTGTTGC+AGG | - | chr8_2:51393776-51393795 | None:intergenic | 60.0% |
| CCTGCAACACCCTTGGCTCA+TGG | + | chr8_2:51393773-51393792 | Msa1253740:CDS | 60.0% | |
| GATCACCGACCCGGACAGCA+TGG | - | chr8_2:51390743-51390762 | None:intergenic | 65.0% | |
| CGGCGAACTGATCACCGACC+CGG | - | chr8_2:51390752-51390771 | None:intergenic | 65.0% | |
| CGGGTCGGTGATCAGTTCGC+CGG | + | chr8_2:51390750-51390769 | Msa1253740:CDS | 65.0% | |
| GTCGGTGATCAGTTCGCCGG+TGG | + | chr8_2:51390753-51390772 | Msa1253740:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 51390415 | 51394162 | 51390415 | ID=Msa1253740;Name=Msa1253740 |
| chr8_2 | mRNA | 51390415 | 51394162 | 51390415 | ID=Msa1253740-mRNA-1;Parent=Msa1253740;Name=Msa1253740-mRNA-1;_AED=0.01;_eAED=0.01;_QI=254|1|1|1|1|1|4|272|445 |
| chr8_2 | exon | 51390415 | 51390851 | 51390415 | ID=Msa1253740-mRNA-1:exon:15763;Parent=Msa1253740-mRNA-1 |
| chr8_2 | exon | 51391737 | 51392522 | 51391737 | ID=Msa1253740-mRNA-1:exon:15764;Parent=Msa1253740-mRNA-1 |
| chr8_2 | exon | 51393325 | 51393372 | 51393325 | ID=Msa1253740-mRNA-1:exon:15765;Parent=Msa1253740-mRNA-1 |
| chr8_2 | exon | 51393570 | 51394162 | 51393570 | ID=Msa1253740-mRNA-1:exon:15766;Parent=Msa1253740-mRNA-1 |
| chr8_2 | five_prime_UTR | 51390415 | 51390668 | 51390415 | ID=Msa1253740-mRNA-1:five_prime_utr;Parent=Msa1253740-mRNA-1 |
| chr8_2 | CDS | 51390669 | 51390851 | 51390669 | ID=Msa1253740-mRNA-1:cds;Parent=Msa1253740-mRNA-1 |
| chr8_2 | CDS | 51391737 | 51392522 | 51391737 | ID=Msa1253740-mRNA-1:cds;Parent=Msa1253740-mRNA-1 |
| chr8_2 | CDS | 51393325 | 51393372 | 51393325 | ID=Msa1253740-mRNA-1:cds;Parent=Msa1253740-mRNA-1 |
| chr8_2 | CDS | 51393570 | 51393890 | 51393570 | ID=Msa1253740-mRNA-1:cds;Parent=Msa1253740-mRNA-1 |
| chr8_2 | three_prime_UTR | 51393891 | 51394162 | 51393891 | ID=Msa1253740-mRNA-1:three_prime_utr;Parent=Msa1253740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
