AlfalfaGEDB | Msa1255350

M. sativa cultivar zhongmu-4 / Msa1255350

KEGG: -
GO: GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009937 GO:0009966 GO:0010029 GO:0010154 GO:0010431 GO:0010468 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0023051 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048316 GO:0048580 GO:0048583 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0097159 GO:0140110 GO:1900140 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2001141
PFAM: PF00096.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1255350	XP_024629013.1	97.323	523	8	2	1	521	1	519	0.0	1030

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1255350	sp\|Q9SCQ6\|IDD2_ARATH	56.238	521	151	14	2	519	3	449	1.20e-178	513

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1255350	A0A396GNR0	97.323	523	8	2	1	521	1	519	0.0	1030

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TFs/TRs:

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Gene ID	Type	Classification
Msa1255350	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1255350	MtrunA17_Chr8g0373541	97.323	523	8	2	1	521	1	519	0.0	1030
Msa1255350	MtrunA17_Chr2g0330171	75.120	209	36	1	4	196	1	209	1.16e-117	355
Msa1255350	MtrunA17_Chr8g0342421	76.077	209	35	2	3	196	17	225	4.37e-117	355
Msa1255350	MtrunA17_Chr4g0040571	47.805	410	169	8	29	413	35	424	6.04e-117	354
Msa1255350	MtrunA17_Chr1g0191991	88.372	172	19	1	31	202	61	231	1.04e-115	352
Msa1255350	MtrunA17_Chr1g0181381	84.091	176	22	2	26	195	26	201	2.62e-111	339
Msa1255350	MtrunA17_Chr4g0029521	76.842	190	39	2	11	195	12	201	3.90e-111	339
Msa1255350	MtrunA17_Chr1g0185121	47.549	408	120	10	4	397	6	333	4.41e-110	335
Msa1255350	MtrunA17_Chr7g0263941	79.032	186	34	1	15	195	11	196	1.29e-109	332
Msa1255350	MtrunA17_Chr1g0199101	85.185	162	24	0	31	192	45	206	7.58e-109	334

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1255350	AT3G50700.1	56.238	521	151	14	2	519	3	449	1.22e-179	513
Msa1255350	AT5G66730.1	58.071	539	166	15	2	521	3	500	1.83e-178	511
Msa1255350	AT1G03840.1	86.228	167	23	0	29	195	37	203	3.41e-111	340
Msa1255350	AT5G44160.1	78.351	194	40	1	4	195	6	199	6.99e-111	338
Msa1255350	AT1G55110.3	70.507	217	49	5	3	204	20	236	3.11e-108	330
Msa1255350	AT1G55110.1	70.507	217	49	5	3	204	20	236	3.11e-108	330
Msa1255350	AT1G55110.2	70.507	217	49	5	3	204	20	236	3.11e-108	330
Msa1255350	AT1G03840.2	85.030	167	23	1	29	195	37	201	8.13e-108	331
Msa1255350	AT3G13810.4	70.233	215	42	2	3	195	19	233	2.35e-106	327
Msa1255350	AT3G13810.1	70.233	215	42	2	3	195	19	233	2.35e-106	327

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Find 160 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATTTGTTGTCTATGAA+TGG	0.395676	8_2:+53859324	Msa1255350:three_prime_UTR
AAAGATCAAGTAAAGAAATT+AGG	0.296295	8_2:+53857261	Msa1255350:CDS
AAAGCTCACTCTAAAGTTTG+TGG	0.439997	8_2:+53857446	Msa1255350:CDS
AAATCAAGAGTTGTCTGCTT+AGG	0.482911	8_2:-53859077	None:intergenic
AAATCACCTAAAGCTCTAGA+AGG	0.470379	8_2:-53857329	None:intergenic
AAATCCACCACAAATCATAG+AGG	0.623951	8_2:+53858452	Msa1255350:CDS
AAATTAAGGGTATGTGCATA+TGG	0.514034	8_2:+53859556	Msa1255350:three_prime_UTR
AACTACTAGTGTTATTATCA+GGG	0.565154	8_2:+53859279	Msa1255350:three_prime_UTR
AACTCTTGATTTCCTAGGAT+TGG	0.365068	8_2:+53859088	Msa1255350:CDS
AAGCACATTGTACCTTGTTA+AGG	0.439079	8_2:-53859509	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATTGTCTAAATCAACCATT+GGG	-	chr8_2:53856899-53856918	None:intergenic	30.0%
ACATTGTCTAAATCAACCAT+TGG	-	chr8_2:53856900-53856919	None:intergenic	30.0%
AAGAAAAAAAGAAATCTCCC+AGG	+	chr8_2:53856996-53857015	Msa1255350:CDS	30.0%
GTGTGTGAAATATGTAACAA+AGG	+	chr8_2:53857173-53857192	Msa1255350:CDS	30.0%
AATCTTCAACTACATAGAAG+AGG	+	chr8_2:53857212-53857231	Msa1255350:CDS	30.0%
AATATGCTGTTCAATCTGAT+TGG	+	chr8_2:53857423-53857442	Msa1255350:CDS	30.0%
ATTGTTTGTTTATGTGGTCT+TGG	+	chr8_2:53857995-53858014	Msa1255350:intron	30.0%
AACACATAGACAAGTAAAGT+TGG	-	chr8_2:53858296-53858315	None:intergenic	30.0%
GACTAAAGGAATTGATGTTA+GGG	+	chr8_2:53859036-53859055	Msa1255350:CDS	30.0%
CTTAAATATGGTCTTTCTTC+TGG	-	chr8_2:53859474-53859493	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	53856696	53859830	53856696	ID=Msa1255350;Name=Msa1255350
chr8_2	mRNA	53856696	53859830	53856696	ID=Msa1255350-mRNA-1;Parent=Msa1255350;Name=Msa1255350-mRNA-1;_AED=0.00;_eAED=0.00;_QI=204\|1\|1\|1\|1\|1\|4\|574\|521
chr8_2	exon	53856696	53857026	53856696	ID=Msa1255350-mRNA-1:exon:16690;Parent=Msa1255350-mRNA-1
chr8_2	exon	53857114	53857510	53857114	ID=Msa1255350-mRNA-1:exon:16691;Parent=Msa1255350-mRNA-1
chr8_2	exon	53857631	53857857	53857631	ID=Msa1255350-mRNA-1:exon:16692;Parent=Msa1255350-mRNA-1
chr8_2	exon	53858442	53859830	53858442	ID=Msa1255350-mRNA-1:exon:16693;Parent=Msa1255350-mRNA-1
chr8_2	five_prime_UTR	53856696	53856899	53856696	ID=Msa1255350-mRNA-1:five_prime_utr;Parent=Msa1255350-mRNA-1
chr8_2	CDS	53856900	53857026	53856900	ID=Msa1255350-mRNA-1:cds;Parent=Msa1255350-mRNA-1
chr8_2	CDS	53857114	53857510	53857114	ID=Msa1255350-mRNA-1:cds;Parent=Msa1255350-mRNA-1
chr8_2	CDS	53857631	53857857	53857631	ID=Msa1255350-mRNA-1:cds;Parent=Msa1255350-mRNA-1
chr8_2	CDS	53858442	53859256	53858442	ID=Msa1255350-mRNA-1:cds;Parent=Msa1255350-mRNA-1
chr8_2	three_prime_UTR	53859257	53859830	53859257	ID=Msa1255350-mRNA-1:three_prime_utr;Parent=Msa1255350-mRNA-1

Gene Sequence

>Msa1255350

ATGGTTGATTTAGACAATGTTTCCACAGCTTCAGGTGAAGCTAGCATCTCTTCCTCTGGTAATAACAATATTCAATCACCAATTCCAAAACCCACCAAGAAAAAAAGAAATCTCCCAGGAATGCCAGATCCAGAAGCAGAGGTGATTGCTCTGTCACCAACAACGTTGTTAGCTACAAACAGATTTGTGTGTGAAATATGTAACAAAGGTTTTCAAAGAGATCAGAATCTTCAACTACATAGAAGAGGACATAATCTACCATGGAAACTGAGACAAAGATCAAGTAAAGAAATTAGGAAAAGGGTTTATGTTTGTCCTGAACCTACTTGTGTTCATCATGATCCTTCTAGAGCTTTAGGTGATTTAACTGGGATAAAAAAGCACTTTTGTAGAAAACATGGTGAGAAAAAGTGGAAATGTGAGAAATGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCACTCTAAAGTTTGTGGTTCTAGAGAGTATAAATGTGATTGTGGAACCGTTTTTTCCAGGAGGGATAGTTTTATCACACATAGAGCTTTTTGTGATGCGTTGGCAGAGGAGAATGCAAAATCTCAGAATCAAGCTGTTGTGAAAGCTAATTCAGAATCTGATTCAAAGGTTTTGACCGGTGATTCGAAGCCGGTGTCGATGCCGGCGGTGATTACTACTACTGCTGCTGCTACTACTCCTCAGTCAAATAGTGGTGTGTCCTCTGCTTTGGAGACTCAGAAGCTAGATTTGCCGGAAAATCCACCACAAATCATAGAGGAGCCACAAGTTGTTGTTACTACTACTGCTAGTGCTTTAAATGCGAGTTGTAGCAGCAGTACTAGCTCAACAAGCAACGGCTGTGCTACCACCAGCACTGGCGTGTTTGCGAGCTTGTTTGCTTCATCAACAGCTTCAGCTTCTGCGAGTCTCCAACCTCAGGCACCGGCGTTCAGCGACCTAATTAGGTCCATGGGATGTACAGATCCTCGTCCTTCAGATTTCTCAGCTCCTCCATCGTCCGAGGCGATCTCTCTTTGCCTCTCGACCAATCATGGATCATCAATTTTCGGAACAGGAGGGCAGGAGTGTCGCCAATACGTGCCAACACATCAGCCGCCCGCGATGTCTGCCACTGCATTACTTCAAAAAGCAGCTCAAATGGGCGCTGCTGCAACAAACGCCTCTCTGCTTCGCGGGCTTGGAATTGTGTCGTCTTCTGCTTCCACTTCATCTGGTCAACAAGATAGCCTGCATTGGGGTCTCGGACAAATGGAACCAGAGGGTTCTAGTTTAGTTTCAGCAGGACTCGGACTAGGTCTTCCTTGTGACGGCGATTCTGGACTAAAGGAATTGATGTTAGGGACTCCGTCAATGTTTGGTCCTAAGCAGACAACTCTTGATTTCCTAGGATTGGGGATGGCTGCTGGTGGCAGTGCCGGTGGAGGCTTGTCTGCACTTATCACATCAATTGGCGGTGGCAGTGGTCTGGATGTTACCGCAGCAGCCGCATCCTTCGGTAATGGAGAGTTCTCTGGCAAAGATATTGGAAGAAGTTCATGA

Protein sequence

>Msa1255350

MVDLDNVSTASGEASISSSGNNNIQSPIPKPTKKKRNLPGMPDPEAEVIALSPTTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEIRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKVCGSREYKCDCGTVFSRRDSFITHRAFCDALAEENAKSQNQAVVKANSESDSKVLTGDSKPVSMPAVITTTAAATTPQSNSGVSSALETQKLDLPENPPQIIEEPQVVVTTTASALNASCSSSTSSTSNGCATTSTGVFASLFASSTASASASLQPQAPAFSDLIRSMGCTDPRPSDFSAPPSSEAISLCLSTNHGSSIFGTGGQECRQYVPTHQPPAMSATALLQKAAQMGAAATNASLLRGLGIVSSSASTSSGQQDSLHWGLGQMEPEGSSLVSAGLGLGLPCDGDSGLKELMLGTPSMFGPKQTTLDFLGLGMAAGGSAGGGLSALITSIGGGSGLDVTAAAASFGNGEFSGKDIGRSS*