AlfalfaGEDB | Msa1255790

M. sativa cultivar zhongmu-4 / Msa1255790

KEGG: K14498
GO: GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1255790	AGG09694.1	100.000	363	0	0	1	363	1	363	0.0	756

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1255790	sp\|Q39193\|SRK2I_ARATH	82.597	362	62	1	1	362	1	361	0.0	613

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1255790	S4TWB4	100.000	363	0	0	1	363	1	363	0.0	756

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1255790	MtrunA17_Chr8g0374571	99.449	363	2	0	1	363	1	363	0.0	754
Msa1255790	MtrunA17_Chr4g0045371	81.543	363	66	1	1	362	1	363	0.0	625
Msa1255790	MtrunA17_Chr5g0402661	83.754	357	56	2	6	362	1	355	0.0	603
Msa1255790	MtrunA17_Chr1g0162301	81.370	365	65	3	1	362	1	365	0.0	594
Msa1255790	MtrunA17_Chr4g0055451	67.941	340	97	2	21	357	3	333	1.42e-176	493
Msa1255790	MtrunA17_Chr8g0381821	69.298	342	101	2	21	362	2	339	6.10e-173	484
Msa1255790	MtrunA17_Chr2g0277501	70.938	320	92	1	21	339	2	321	6.58e-172	482
Msa1255790	MtrunA17_Chr3g0131061	74.086	301	77	1	21	320	2	302	2.08e-171	481
Msa1255790	MtrunA17_Chr8g0385281	73.754	301	78	1	21	320	3	303	2.24e-171	481
Msa1255790	MtrunA17_Chr5g0426521	68.182	330	98	2	21	345	2	329	7.74e-170	476

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1255790	AT5G66880.1	82.597	362	62	1	1	362	1	361	0.0	613
Msa1255790	AT5G66880.2	82.597	362	62	1	1	362	1	361	0.0	613
Msa1255790	AT3G50500.1	81.215	362	68	0	1	362	1	362	0.0	601
Msa1255790	AT3G50500.2	79.675	369	68	1	1	362	1	369	0.0	594
Msa1255790	AT4G33950.1	79.945	364	69	3	1	362	1	362	0.0	591
Msa1255790	AT4G33950.2	80.645	341	64	2	1	341	1	339	0.0	581
Msa1255790	AT5G63650.1	71.704	311	87	1	21	330	2	312	1.91e-170	479
Msa1255790	AT5G08590.1	71.336	307	88	0	21	327	2	308	2.77e-170	479
Msa1255790	AT1G10940.1	73.179	302	78	2	21	320	2	302	9.61e-170	478
Msa1255790	AT1G60940.1	71.383	311	88	1	21	330	2	312	2.17e-169	476

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Find 129 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATATTTGGATGGATT+GGG	0.385680	8_2:+55034926	None:intergenic
AAACAAAGATCCTTGAGATA+AGG	0.518593	8_2:+55031358	None:intergenic
AAACATGTACACATGAACTA+CGG	0.612439	8_2:+55030441	None:intergenic
AAAGAACAGGTTCCAGCTGC+TGG	0.474162	8_2:+55031032	None:intergenic
AAAGTTTAATTACCATTGCA+TGG	0.540079	8_2:+55033507	None:intergenic
AAATCACATATCTTCAGACG+AGG	0.705036	8_2:+55033299	None:intergenic
AACCTTATATGTGATGCTAG+TGG	0.585559	8_2:-55031585	Msa1255790:CDS
AAGGAGAGCATTCTTAATAT+TGG	0.197222	8_2:-55030860	Msa1255790:three_prime_UTR
AATATCAGATTGCAGATGTT+TGG	0.368115	8_2:-55031619	Msa1255790:intron
ACATGTTGTATTTCAAGTAC+TGG	0.423910	8_2:+55030886	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAAGCGAGAAAGAGA+GGG	+	chr8_2:55030578-55030597	None:intergenic	30.0%
TGTATTTACGAATTGAAGTC+GGG	-	chr8_2:55031219-55031238	Msa1255790:intron	30.0%
GCAAATTTACAAAACTGCAA+AGG	+	chr8_2:55031263-55031282	None:intergenic	30.0%
ACAAAAAATACACCTAAACC+AGG	+	chr8_2:55031311-55031330	None:intergenic	30.0%
TAACCTTATGTTATGACTGA+TGG	-	chr8_2:55031399-55031418	Msa1255790:CDS	30.0%
ATTACAATAGCAAGATGAGT+AGG	+	chr8_2:55031634-55031653	None:intergenic	30.0%
TTCACACTCTATGAATAAAC+AGG	+	chr8_2:55031755-55031774	None:intergenic	30.0%
TTCTTTCAACAACTCATATC+TGG	-	chr8_2:55031839-55031858	Msa1255790:intron	30.0%
TCTTTCAACAACTCATATCT+GGG	-	chr8_2:55031840-55031859	Msa1255790:intron	30.0%
AAACATAAGACTAATGCATC+AGG	+	chr8_2:55031986-55032005	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	55030406	55034997	55030406	ID=Msa1255790;Name=Msa1255790
chr8_2	mRNA	55030406	55034997	55030406	ID=Msa1255790-mRNA-1;Parent=Msa1255790;Name=Msa1255790-mRNA-1;_AED=0.15;_eAED=0.15;_QI=212\|1\|1\|1\|1\|1\|9\|514\|363
chr8_2	exon	55030406	55031213	55030406	ID=Msa1255790-mRNA-1:exon:16994;Parent=Msa1255790-mRNA-1
chr8_2	exon	55031344	55031442	55031344	ID=Msa1255790-mRNA-1:exon:16993;Parent=Msa1255790-mRNA-1
chr8_2	exon	55031529	55031633	55031529	ID=Msa1255790-mRNA-1:exon:16992;Parent=Msa1255790-mRNA-1
chr8_2	exon	55032535	55032627	55032535	ID=Msa1255790-mRNA-1:exon:16991;Parent=Msa1255790-mRNA-1
chr8_2	exon	55033286	55033378	55033286	ID=Msa1255790-mRNA-1:exon:16990;Parent=Msa1255790-mRNA-1
chr8_2	exon	55033520	55033573	55033520	ID=Msa1255790-mRNA-1:exon:16989;Parent=Msa1255790-mRNA-1
chr8_2	exon	55033683	55033784	55033683	ID=Msa1255790-mRNA-1:exon:16988;Parent=Msa1255790-mRNA-1
chr8_2	exon	55033866	55033940	55033866	ID=Msa1255790-mRNA-1:exon:16987;Parent=Msa1255790-mRNA-1
chr8_2	exon	55034609	55034997	55034609	ID=Msa1255790-mRNA-1:exon:16986;Parent=Msa1255790-mRNA-1
chr8_2	five_prime_UTR	55034786	55034997	55034786	ID=Msa1255790-mRNA-1:five_prime_utr;Parent=Msa1255790-mRNA-1
chr8_2	CDS	55034609	55034785	55034609	ID=Msa1255790-mRNA-1:cds;Parent=Msa1255790-mRNA-1
chr8_2	CDS	55033866	55033940	55033866	ID=Msa1255790-mRNA-1:cds;Parent=Msa1255790-mRNA-1
chr8_2	CDS	55033683	55033784	55033683	ID=Msa1255790-mRNA-1:cds;Parent=Msa1255790-mRNA-1
chr8_2	CDS	55033520	55033573	55033520	ID=Msa1255790-mRNA-1:cds;Parent=Msa1255790-mRNA-1
chr8_2	CDS	55033286	55033378	55033286	ID=Msa1255790-mRNA-1:cds;Parent=Msa1255790-mRNA-1
chr8_2	CDS	55032535	55032627	55032535	ID=Msa1255790-mRNA-1:cds;Parent=Msa1255790-mRNA-1
chr8_2	CDS	55031529	55031633	55031529	ID=Msa1255790-mRNA-1:cds;Parent=Msa1255790-mRNA-1
chr8_2	CDS	55031344	55031442	55031344	ID=Msa1255790-mRNA-1:cds;Parent=Msa1255790-mRNA-1
chr8_2	CDS	55030920	55031213	55030920	ID=Msa1255790-mRNA-1:cds;Parent=Msa1255790-mRNA-1
chr8_2	three_prime_UTR	55030406	55030919	55030406	ID=Msa1255790-mRNA-1:three_prime_utr;Parent=Msa1255790-mRNA-1

Gene Sequence

>Msa1255790

ATGGATCGAGCTGCGATGACGGTCGGACCGGGTATGGATTTACCGATCATGCACGACAGTGATCGGTACGATCTGGTTCGTGATATCGGGTCCGGAAATTTCGGTATTGCTAGGTTGATGCAAGATAAACAAACCAAAGAGCTTGTTGCTGTTAAATATATCGAACGTGGTGATAAGATTGATGAAAATGTGAAGAGAGAAATTATTAATCACAGGTCTCTGAGACATCCTAACATTGTTAGGTTCAAGGAGGTCATTTTAACACCTACTCATCTTGCTATTGTAATGGAGTATGCATCTGGAGGAGAACTTTTCGAGCGAATCAGTAATGCTGGCCATTTTTCTGAGGACGAGGCTCGTTTCTTCTTTCAACAACTCATATCTGGGGTCAGCTACTGCCATGCAATGCAAGTATGTCACCGGGACCTGAAATTGGAAAATACTTTGTTGGATGGAAGCCCGACTCCTCGTCTGAAGATATGTGATTTTGGTTACTCCAAGTCTTCAGTGCTTCATTCACAACCGAAGTCAACTGTGGGAACTCCGGCATATATTGCTCCAGAAGTATTACTGAGACAAGAGTATGATGGAAAGATTGCAGATGTTTGGTCTTGTGGGGTAACCTTATATGTGATGCTAGTGGGATCGTATCCCTTTGAAGATCCTAACGAGCCAAAAGATTTCCGGAAGACAATACAGAGAGTACTAAGTGTCCAGTATTCCATTCCAGACAATGTTCAGATAACTCCAGAGTGTCGCCACCTTATCTCAAGGATCTTTGTTTTTGACCCTGCAGAGAGAATTACCATGCCCGAAATCTGGAAACATAAATGGTTTCTGAAGAATCTTCCCATGGACCTGATGGATGAGAAGATAATGGGTAACCAATTTGAAGAGCCTGAACAACCCATGCAGAGCATTGATGCAATCATGCAGATAATTTCAGAAGCTACTATACCAGCAGCTGGAACCTGTTCTTTAGACCAGTTTATGGCAGATAACATTGATATGGACGATGAATTTGATGACTTGGAATATGAATCCGAGCTTGATATAGATAGCAGTGGGGAGATAGTGTATGCTATGTACTAA

Protein sequence

>Msa1255790

MDRAAMTVGPGMDLPIMHDSDRYDLVRDIGSGNFGIARLMQDKQTKELVAVKYIERGDKIDENVKREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERISNAGHFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPTPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGSYPFEDPNEPKDFRKTIQRVLSVQYSIPDNVQITPECRHLISRIFVFDPAERITMPEIWKHKWFLKNLPMDLMDEKIMGNQFEEPEQPMQSIDAIMQIISEATIPAAGTCSLDQFMADNIDMDDEFDDLEYESELDIDSSGEIVYAMY*