AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1257050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1257050 MtrunA17_Chr4g0055611 96.863 542 17 0 1 542 1 542 0.0 1089
Msa1257050 MtrunA17_Chr5g0399781 77.075 253 52 4 1 250 1 250 4.06e-128 374
Msa1257050 MtrunA17_Chr5g0399791 61.411 241 81 2 282 522 6 234 1.44e-93 286
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1257050 AT4G17570.3 50.752 532 227 14 1 518 1 511 2.64e-144 426
Msa1257050 AT4G17570.1 50.188 532 226 15 1 518 1 507 1.69e-139 413
Msa1257050 AT4G17570.2 49.807 518 225 14 15 518 27 523 8.63e-132 394
Msa1257050 AT5G47140.1 46.154 533 206 13 1 518 1 467 1.81e-118 358

Find 160 sgRNAs with CRISPR-Local

Find 349 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGATGTCTTGCAGTCTTC+AGG 0.202442 8_2:-57407594 None:intergenic
CCACATGCATTGCATAAAAT+TGG 0.209606 8_2:-57404747 None:intergenic
GATGAACTAGACAATTATTT+TGG 0.224964 8_2:+57409053 Msa1257050:three_prime_UTR
TGAGCAACCAAGCTAGAATT+TGG 0.226392 8_2:-57408590 None:intergenic
GTCCTTCTCGGTCAGTAGTC+TGG 0.257209 8_2:+57405700 Msa1257050:CDS
TATCCTCATCAACAGCCTTT+TGG 0.266134 8_2:-57404980 None:intergenic
TGGAATCCTTGATTATATTC+AGG 0.275290 8_2:-57404960 None:intergenic
AGCTGCTCCTGTTGCAGTCT+TGG 0.279584 8_2:-57406104 None:intergenic
CATTCATCTGAAGAAATAAA+TGG 0.283008 8_2:+57409005 Msa1257050:three_prime_UTR
ATACTGCTAAATTTCCTAAT+AGG 0.293174 8_2:+57407306 Msa1257050:CDS
TAAGAACAAAGAAGTGAAAT+TGG 0.296795 8_2:+57404884 Msa1257050:CDS
CGGGGAGATACTTCAGTAAT+TGG 0.306286 8_2:-57407277 None:intergenic
GTCTTTGATATCTCTTTGTT+TGG 0.309370 8_2:+57407564 Msa1257050:CDS
ACACATCAAGTGTCATGTTT+TGG 0.312360 8_2:-57409089 None:intergenic
TAACCAGATTCTAACCTATT+AGG 0.314410 8_2:-57407320 None:intergenic
ACTGATATAAGCCTTAAATT+AGG 0.315615 8_2:+57403315 Msa1257050:five_prime_UTR
AGCTGGAAAACGTAATGATA+TGG 0.322982 8_2:+57408073 Msa1257050:CDS
GCTGCTCCTGTTGCAGTCTT+GGG 0.330451 8_2:-57406103 None:intergenic
TGGCATGAATTTCTCTTCTC+AGG 0.335218 8_2:+57406052 Msa1257050:CDS
TCAGAAAGCTGCGTTCAATT+TGG 0.340455 8_2:+57405041 Msa1257050:CDS
AACAGGATTGCTGTTGTTCA+TGG 0.347627 8_2:-57405815 None:intergenic
TTCAGAAGAAGCAGAGAAAC+AGG 0.359840 8_2:-57405832 None:intergenic
TGCTGGCCCAAGACTGCAAC+AGG 0.360278 8_2:+57406097 Msa1257050:CDS
GACATGGAAGCATGCTTATT+AGG 0.380641 8_2:+57405904 Msa1257050:CDS
AATGAGGCATATTCGTGTTA+TGG 0.381814 8_2:+57406002 Msa1257050:CDS
AAGACTGCAAGACATCTAAA+AGG 0.389266 8_2:+57407598 Msa1257050:CDS
GTTCGATAGCTTTCAATTCA+AGG 0.390519 8_2:+57407503 Msa1257050:CDS
CATTTATTTCTTCAGATGAA+TGG 0.391400 8_2:-57409004 None:intergenic
TCCATAGTACATACTCTTCC+AGG 0.393390 8_2:-57408682 None:intergenic
ACGAATATGCCTCATTCATT+AGG 0.397130 8_2:-57405995 None:intergenic
TTTGATATCTCTTTGTTTGG+AGG 0.399259 8_2:+57407567 Msa1257050:CDS
GATAATGCTTATGCTGCATC+TGG 0.405843 8_2:+57404927 Msa1257050:CDS
ACAAGCAATAGATCAAGTTC+AGG 0.405979 8_2:+57405002 Msa1257050:CDS
TGGTTAATTTAGGTCCTTCT+CGG 0.410225 8_2:+57405688 Msa1257050:intron
CATTGCGAGGAAATGCAAAT+AGG 0.412981 8_2:-57408457 None:intergenic
TAGATGTCTTGCAGTCTTCA+GGG 0.413125 8_2:-57407593 None:intergenic
TTGGTTATAAAGAGTTTAGT+TGG 0.418646 8_2:+57409482 Msa1257050:three_prime_UTR
TTGGCAATCCAAGCTCAATA+AGG 0.423805 8_2:-57408807 None:intergenic
ATTGCATAAAATTGGCTTCT+CGG 0.425605 8_2:-57404739 None:intergenic
CGTTGATGAGAGTTCGGATC+AGG 0.428748 8_2:+57408511 Msa1257050:CDS
AAACTTCGTTGATGAGAGTT+CGG 0.431868 8_2:+57408505 Msa1257050:CDS
GGAATCCTTGATTATATTCA+GGG 0.435974 8_2:-57404959 None:intergenic
TTTAAGGCTTATATCAGTAG+TGG 0.440888 8_2:-57403310 None:intergenic
TTTCTCTGCTTCTTCTGAAG+AGG 0.445798 8_2:+57405836 Msa1257050:CDS
GCTTCTTTGCCACCAGTGCC+AGG 0.446048 8_2:-57408404 None:intergenic
ACCTGGAAGAGTATGTACTA+TGG 0.448507 8_2:+57408681 Msa1257050:three_prime_UTR
AGAGAGAATGAGAGGAAGGA+AGG 0.449351 8_2:-57403062 None:intergenic
TTGCATAAAATTGGCTTCTC+GGG 0.450813 8_2:-57404738 None:intergenic
CCGATGGTCTCTGTTGAGAT+AGG 0.451064 8_2:+57405882 Msa1257050:CDS
ACTTGCAACCTTATTGAGCT+TGG 0.456245 8_2:+57408799 Msa1257050:three_prime_UTR
GAGCAACCAAGCTAGAATTT+GGG 0.456850 8_2:-57408589 None:intergenic
CAATGGTGGCTTGCACATGC+TGG 0.457641 8_2:+57408475 Msa1257050:CDS
CCCATCCAACTTGCATCCCT+TGG 0.461584 8_2:-57408826 None:intergenic
GTCCTTGAATAATCTTTACT+AGG 0.465381 8_2:+57408654 Msa1257050:exon
CTCTTCTCAGGGAGTTGCAA+AGG 0.470360 8_2:+57406064 Msa1257050:CDS
AACCTAGTAAAGATTATTCA+AGG 0.476906 8_2:-57408656 None:intergenic
CCTGCTCCCAAATTCTAGCT+TGG 0.478457 8_2:+57408583 Msa1257050:CDS
GAAAGCTGCGTTCAATTTGG+CGG 0.481959 8_2:+57405044 Msa1257050:CDS
CAACAATGAGGAGTCCCAAA+AGG 0.482639 8_2:+57408369 Msa1257050:CDS
TCCTTCTCGGTCAGTAGTCT+GGG 0.482866 8_2:+57405701 Msa1257050:CDS
GGAAGAGAAAAGAACATTGA+AGG 0.484756 8_2:-57403133 None:intergenic
GGTGGCAAAGAAGCTGTAGA+TGG 0.485633 8_2:+57408413 Msa1257050:CDS
GCCAGTGTAATCACTAAGCA+TGG 0.486056 8_2:-57406033 None:intergenic
AGAGAGAAAAGGAGAAGGGA+AGG 0.487756 8_2:-57403097 None:intergenic
AATTAGAGAGATTGATAAGT+GGG 0.487796 8_2:-57403186 None:intergenic
AAGGAGAAGGGAAGGTGCAA+TGG 0.490917 8_2:-57403089 None:intergenic
AAGAGTTTAGTTGGCAAGTG+AGG 0.492655 8_2:+57409491 Msa1257050:three_prime_UTR
TGTGGAAAAGAATTGTTAGA+TGG 0.494479 8_2:-57408551 None:intergenic
GAAATTTCAGGGACAAGTCT+CGG 0.494618 8_2:+57406512 Msa1257050:intron
ATTATACTCCTTTACATGCT+CGG 0.500610 8_2:+57404802 Msa1257050:CDS
TGGATGAATAGCTTTATGAA+TGG 0.500950 8_2:+57409025 Msa1257050:three_prime_UTR
GAATAGCTTTATGAATGGAT+AGG 0.503442 8_2:+57409030 Msa1257050:three_prime_UTR
CTATTTGCATTTCCTCGCAA+TGG 0.505348 8_2:+57408458 Msa1257050:CDS
TGAGGAAAAGATTGAGACAT+GGG 0.507698 8_2:+57403428 Msa1257050:exon
TCTGATGAATGAGAGAGAAA+AGG 0.511143 8_2:-57403108 None:intergenic
CATAAAATTGGCTTCTCGGG+TGG 0.513655 8_2:-57404735 None:intergenic
TTGAGGATCAGAGAGTTTCA+AGG 0.515344 8_2:+57404841 Msa1257050:CDS
GCCAAGGGATGCAAGTTGGA+TGG 0.515362 8_2:+57408825 Msa1257050:three_prime_UTR
CAGAAAGGTGGAAACAAAGC+TGG 0.517998 8_2:+57408056 Msa1257050:intron
AAAGAGAGAGAATGAGAGGA+AGG 0.520843 8_2:-57403066 None:intergenic
GAATGAGAGAGAAAAGGAGA+AGG 0.521112 8_2:-57403102 None:intergenic
AATAGCTTTATGAATGGATA+GGG 0.521302 8_2:+57409031 Msa1257050:three_prime_UTR
GGCATGAATTTCTCTTCTCA+GGG 0.528773 8_2:+57406053 Msa1257050:CDS
AATTCTAGCTTGGTTGCTCA+AGG 0.529989 8_2:+57408593 Msa1257050:CDS
CGAGTATACTGAGCTACTAC+TGG 0.530369 8_2:-57408621 None:intergenic
CGCAACATTACTTGATGCCA+CGG 0.532105 8_2:-57408105 None:intergenic
GGCACACCACTTTGGCGTAA+CGG 0.532158 8_2:+57404711 Msa1257050:intron
CCAAGGGATGCAAGTTGGAT+GGG 0.536174 8_2:+57408826 Msa1257050:three_prime_UTR
TAAACAATGCCTAATGAATG+AGG 0.536919 8_2:+57405986 Msa1257050:CDS
AATGAGAGAGAAAAGGAGAA+GGG 0.538089 8_2:-57403101 None:intergenic
TTGCAATAGGCACACCACTT+TGG 0.540892 8_2:+57404703 Msa1257050:intron
TTTCAGAAACTTCTCGAGGA+AGG 0.544680 8_2:+57407540 Msa1257050:CDS
CCAAGCTAGAATTTGGGAGC+AGG 0.546142 8_2:-57408583 None:intergenic
ACCTGTCAAATCACTAGCAT+CGG 0.546237 8_2:-57405069 None:intergenic
GCAAAGGTCAGAAACTCTGC+TGG 0.547430 8_2:+57406080 Msa1257050:CDS
GTATCTGTCCGAGCATGTAA+AGG 0.548439 8_2:-57404810 None:intergenic
AGAAGAATGCTTCAGACGCC+CGG 0.550473 8_2:-57405757 None:intergenic
AATGGTGTTTCTGTGGAAGG+AGG 0.551675 8_2:-57408986 None:intergenic
ACCGATGCTAGTGATTTGAC+AGG 0.552424 8_2:+57405068 Msa1257050:CDS
ATGGAAAGAGAGAGAATGAG+AGG 0.556418 8_2:-57403070 None:intergenic
AACAATGAGGAGTCCCAAAA+GGG 0.557773 8_2:+57408370 Msa1257050:CDS
TTCACCCCTGAATATAATCA+AGG 0.559752 8_2:+57404954 Msa1257050:CDS
ACATTACTTGATGCCACGGC+AGG 0.560071 8_2:-57408101 None:intergenic
GATTGCCAAGGGATGCAAGT+TGG 0.561688 8_2:+57408821 Msa1257050:three_prime_UTR
AATCTTTACTAGGTTATACC+TGG 0.562944 8_2:+57408664 Msa1257050:three_prime_UTR
GGATCTCGATGGAGGACAAA+GGG 0.566793 8_2:+57404768 Msa1257050:CDS
TCGTCACGAGCTATAGAGCT+AGG 0.567657 8_2:-57405930 None:intergenic
ATATAATCAAGGATTCCAAA+AGG 0.569920 8_2:+57404965 Msa1257050:CDS
TCTTGTACAATACAACTAAG+AGG 0.575264 8_2:+57403009 Msa1257050:five_prime_UTR
TTACGAAAGTGAAACTCCGA+TGG 0.575376 8_2:+57405866 Msa1257050:CDS
GATTGAGACATGGGAAAACA+AGG 0.576682 8_2:+57403437 Msa1257050:exon
GAATTAGAGAGATTGATAAG+TGG 0.576897 8_2:-57403187 None:intergenic
TTTGCATTTCCTCGCAATGG+TGG 0.577452 8_2:+57408461 Msa1257050:CDS
TTGAGGAAAAGATTGAGACA+TGG 0.577970 8_2:+57403427 Msa1257050:exon
AATTTAGCAGTATCAACCAC+GGG 0.579103 8_2:-57407296 None:intergenic
ATGGTGTTTCTGTGGAAGGA+GGG 0.580700 8_2:-57408985 None:intergenic
TATTGAGCTTGGATTGCCAA+GGG 0.582624 8_2:+57408810 Msa1257050:three_prime_UTR
CAGTGACATTTAATATGTTG+AGG 0.582964 8_2:-57409524 None:intergenic
GCAGCTTTCTGAATTAGAGA+TGG 0.584857 8_2:-57405030 None:intergenic
ATTCCAAAAGGCTGTTGATG+AGG 0.585516 8_2:+57404977 Msa1257050:CDS
TTAAGGCTTATATCAGTAGT+GGG 0.585928 8_2:-57403309 None:intergenic
CAAGCAATAGATCAAGTTCA+GGG 0.586403 8_2:+57405003 Msa1257050:CDS
AGCTCGTGACGAAGAGTCTG+AGG 0.591447 8_2:+57405941 Msa1257050:CDS
GTCTCTGTTGAGATAGGACA+TGG 0.594614 8_2:+57405888 Msa1257050:CDS
ATGCTTATGCTGCATCTGGA+TGG 0.594811 8_2:+57404931 Msa1257050:CDS
ATAGTAAAACCTGGCACTGG+TGG 0.598374 8_2:+57408395 Msa1257050:CDS
TGGATCTCGATGGAGGACAA+AGG 0.599405 8_2:+57404767 Msa1257050:CDS
TCAGATGAATGGTGTTTCTG+TGG 0.600576 8_2:-57408993 None:intergenic
TGCAACAGGAGCAGCTTGTG+TGG 0.602488 8_2:+57406111 Msa1257050:CDS
GTGATAGTAAAACCTGGCAC+TGG 0.602888 8_2:+57408392 Msa1257050:CDS
TACAATTGCATACAAAACAC+TGG 0.603777 8_2:-57408914 None:intergenic
TTATTGAGCTTGGATTGCCA+AGG 0.608489 8_2:+57408809 Msa1257050:three_prime_UTR
TAGGAATCTGTACAATCCAA+TGG 0.620481 8_2:-57403154 None:intergenic
CTTCTACGAGTGCAGAAAGG+TGG 0.623014 8_2:+57408044 Msa1257050:intron
ATGAATGGTGTTTCTGTGGA+AGG 0.623129 8_2:-57408989 None:intergenic
GTAACTCCACAGTGAAAGCA+AGG 0.627202 8_2:-57403461 None:intergenic
CCAGTGTAATCACTAAGCAT+GGG 0.628822 8_2:-57406032 None:intergenic
TATCTCTTGTACAAGGACTT+CGG 0.632890 8_2:-57408756 None:intergenic
AAAAGGGTGATAGTAAAACC+TGG 0.635517 8_2:+57408386 Msa1257050:CDS
CATATATATAGCACAAAATG+CGG 0.640585 8_2:+57408880 Msa1257050:three_prime_UTR
CAGAATTGAAGACAACAATG+AGG 0.642781 8_2:+57408357 Msa1257050:intron
GGGAGCAGGAGCTCTGCCTG+TGG 0.642912 8_2:-57408569 None:intergenic
ATGTGCAAGCCACCATTGCG+AGG 0.645717 8_2:-57408470 None:intergenic
TCCTTGTACAAGAGATACGA+TGG 0.646277 8_2:+57408762 Msa1257050:three_prime_UTR
CCTATCTCAACAGAGACCAT+CGG 0.650405 8_2:-57405882 None:intergenic
GCCATCGTATCTCTTGTACA+AGG 0.652953 8_2:-57408763 None:intergenic
TGATATGGAATCTCCTGCCG+TGG 0.657248 8_2:+57408088 Msa1257050:CDS
CGATAGCTTTCAATTCAAGG+AGG 0.658269 8_2:+57407506 Msa1257050:CDS
GAATCCTTGATTATATTCAG+GGG 0.659607 8_2:-57404958 None:intergenic
GCAATGCATGTGGATCTCGA+TGG 0.669120 8_2:+57404757 Msa1257050:CDS
GGTGGCCCGTTACGCCAAAG+TGG 0.670404 8_2:-57404717 None:intergenic
CCCATGCTTAGTGATTACAC+TGG 0.670617 8_2:+57406032 Msa1257050:CDS
TAAGACACAAGCAAAACATG+TGG 0.676172 8_2:-57408729 None:intergenic
ATGCATGTGGATCTCGATGG+AGG 0.680507 8_2:+57404760 Msa1257050:CDS
TTAGGATGTAGTGAACTACA+AGG 0.684148 8_2:+57407220 Msa1257050:intron
AAATTTAGCAGTATCAACCA+CGG 0.687637 8_2:-57407297 None:intergenic
CAAGGACCTTGCTTTCACTG+TGG 0.702292 8_2:+57403455 Msa1257050:CDS
GTCAGTAGTCTGGGATACTG+CGG 0.720733 8_2:+57405710 Msa1257050:CDS
ATTACTGAAGTATCTCCCCG+TGG 0.761483 8_2:+57407280 Msa1257050:CDS
ATTTAGCAGTATCAACCACG+GGG 0.799155 8_2:-57407295 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAACTGTATAT+TGG - chr8_2:57403505-57403524 None:intergenic 10.0%
!!! TTTTTTTTGCTATTTTTTTT+TGG + chr8_2:57403519-57403538 Msa1257050:intron 10.0%
!! AATATATTATTTGTTTATGT+TGG - chr8_2:57403670-57403689 None:intergenic 10.0%
!!! AAATTTAAAATGTTTCATTT+AGG + chr8_2:57404247-57404266 Msa1257050:intron 10.0%
!!! ATATTTGATTTGAATAAAAA+TGG - chr8_2:57406697-57406716 None:intergenic 10.0%
!!! TTTTGTAATAATTTCATATT+CGG - chr8_2:57408207-57408226 None:intergenic 10.0%
!! AATATGATAAAAGATAATCA+TGG - chr8_2:57404055-57404074 None:intergenic 15.0%
!!! CATATTAATATAATGTGTTT+TGG + chr8_2:57406766-57406785 Msa1257050:intron 15.0%
!!! AAATGATTTTTAATACTGTT+TGG + chr8_2:57406851-57406870 Msa1257050:intron 15.0%
!!! AATGATTTTTAATACTGTTT+GGG + chr8_2:57406852-57406871 Msa1257050:intron 15.0%
!! TCTTAAAAATAAAAAAGGAT+AGG - chr8_2:57407977-57407996 None:intergenic 15.0%
!! CTAACTCTTAAAAATAAAAA+AGG - chr8_2:57407982-57408001 None:intergenic 15.0%
!!! TATGGACATAATTTTATATT+TGG + chr8_2:57408699-57408718 Msa1257050:three_prime_UTR 15.0%
!!! CATAATTTTATATTTGGTTA+CGG + chr8_2:57408705-57408724 Msa1257050:three_prime_UTR 15.0%
!!! GTAAAAAAAAAGCACTTTTA+AGG + chr8_2:57403234-57403253 Msa1257050:five_prime_UTR 20.0%
!!! GTTTTTTTAAGCCTAATTTA+AGG - chr8_2:57403329-57403348 None:intergenic 20.0%
!! GAATCATAAACAAATGTAAT+TGG + chr8_2:57403831-57403850 Msa1257050:intron 20.0%
!!! ATTTGAAAACAGTTTTCAAA+TGG + chr8_2:57404195-57404214 Msa1257050:intron 20.0%
!! TAAATTCATCAAGCAAATAT+GGG - chr8_2:57404383-57404402 None:intergenic 20.0%
!! ATAAATTCATCAAGCAAATA+TGG - chr8_2:57404384-57404403 None:intergenic 20.0%
!! TATGTAAAATATCTAGTAAG+AGG + chr8_2:57404460-57404479 Msa1257050:intron 20.0%
!! TTGATTATGCTCAAATAAAT+AGG - chr8_2:57405196-57405215 None:intergenic 20.0%
!!! TTGCTTTTATTAAAGAAACA+AGG - chr8_2:57405647-57405666 None:intergenic 20.0%
!! TAACTCTAATAACAATAGTT+TGG + chr8_2:57405668-57405687 Msa1257050:intron 20.0%
!! AACAATAGTTTGGTTAATTT+AGG + chr8_2:57405678-57405697 Msa1257050:intron 20.0%
!! GAATAACTATTAAGTCTTAA+AGG - chr8_2:57406486-57406505 None:intergenic 20.0%
!!! TTATTCCTTTTTGAAATTTC+AGG + chr8_2:57406500-57406519 Msa1257050:intron 20.0%
!!! TATTCCTTTTTGAAATTTCA+GGG + chr8_2:57406501-57406520 Msa1257050:intron 20.0%
!!! AAATGATATGATCATGATTT+TGG + chr8_2:57406894-57406913 Msa1257050:intron 20.0%
!!! AATGATATGATCATGATTTT+GGG + chr8_2:57406895-57406914 Msa1257050:intron 20.0%
!! AACATAACAAATTGACATTA+TGG + chr8_2:57407052-57407071 Msa1257050:intron 20.0%
!!! ACATTATGGTTTGATTTAAT+TGG + chr8_2:57407066-57407085 Msa1257050:intron 20.0%
!!! TTCAGCATTCATTAATTTTA+TGG - chr8_2:57407179-57407198 None:intergenic 20.0%
!! AAAATTGAAACTTATGTCAA+AGG - chr8_2:57407418-57407437 None:intergenic 20.0%
!! CATATCATTCATATTTATTC+AGG - chr8_2:57407861-57407880 None:intergenic 20.0%
!!! AAAGCATAACATATTTTGTT+TGG + chr8_2:57407909-57407928 Msa1257050:intron 20.0%
!!! ATAACATATTTTGTTTGGTT+TGG + chr8_2:57407914-57407933 Msa1257050:intron 20.0%
!! TGTAGAAAATAATTGTACAT+TGG + chr8_2:57409152-57409171 Msa1257050:intron 20.0%
!! ACTTGTTTATAATTGTGAAT+CGG - chr8_2:57409306-57409325 None:intergenic 20.0%
!!! AATCCAATATATTTGTTTCT+TGG - chr8_2:57409349-57409368 None:intergenic 20.0%
!!! TTGAGATTTTACAACTATTT+TGG + chr8_2:57409367-57409386 Msa1257050:intron 20.0%
! AATTAGAGAGATTGATAAGT+GGG - chr8_2:57403189-57403208 None:intergenic 25.0%
! TTAAAAACAAAAACTGCTTC+TGG + chr8_2:57403259-57403278 Msa1257050:five_prime_UTR 25.0%
! TAAAAACAAAAACTGCTTCT+GGG + chr8_2:57403260-57403279 Msa1257050:five_prime_UTR 25.0%
! ACTGATATAAGCCTTAAATT+AGG + chr8_2:57403315-57403334 Msa1257050:five_prime_UTR 25.0%
!!! TTTATTTACCCTTTTGTTTG+AGG + chr8_2:57403410-57403429 Msa1257050:five_prime_UTR 25.0%
!! AATCTTTTCCTCAAACAAAA+GGG - chr8_2:57403421-57403440 None:intergenic 25.0%
! AAAATTGAAATATGTGTTGC+TGG + chr8_2:57403644-57403663 Msa1257050:intron 25.0%
! TAGTTCACTTATTTCACATT+TGG + chr8_2:57403928-57403947 Msa1257050:intron 25.0%
!! CAGATAAATGTTAATCCTTT+TGG + chr8_2:57404300-57404319 Msa1257050:intron 25.0%
! TTGATGAATTTATTGCATAC+CGG + chr8_2:57404391-57404410 Msa1257050:intron 25.0%
!!! TATCTTATTTTCCTTGCAAA+AGG + chr8_2:57404414-57404433 Msa1257050:intron 25.0%
!!! ATCTTATTTTCCTTGCAAAA+GGG + chr8_2:57404415-57404434 Msa1257050:intron 25.0%
! TATCAGTATTCAAGATCATA+AGG - chr8_2:57404521-57404540 None:intergenic 25.0%
! TGTGATTGTTAATTGTCTAT+CGG + chr8_2:57404601-57404620 Msa1257050:intron 25.0%
! TAACAAATAATCCTTGCAAT+AGG + chr8_2:57404690-57404709 Msa1257050:intron 25.0%
! TAAGAACAAAGAAGTGAAAT+TGG + chr8_2:57404884-57404903 Msa1257050:CDS 25.0%
! ATATAATCAAGGATTCCAAA+AGG + chr8_2:57404965-57404984 Msa1257050:CDS 25.0%
! TCTATAGTATTTCAACTGAA+AGG - chr8_2:57405161-57405180 None:intergenic 25.0%
!! TCAAGAAGTGCATAATATAA+TGG + chr8_2:57405212-57405231 Msa1257050:intron 25.0%
!! CAAGAAGTGCATAATATAAT+GGG + chr8_2:57405213-57405232 Msa1257050:intron 25.0%
!! AAGAAGTGCATAATATAATG+GGG + chr8_2:57405214-57405233 Msa1257050:intron 25.0%
! ATGAATAGTCTTTGTACATA+TGG + chr8_2:57406394-57406413 Msa1257050:intron 25.0%
! AAATATTAGAGATAAGACTG+TGG + chr8_2:57406427-57406446 Msa1257050:intron 25.0%
! TCAAATATTCTATCCTAACA+TGG + chr8_2:57406709-57406728 Msa1257050:intron 25.0%
! ATAATTTCATGCATTACTCT+TGG + chr8_2:57406802-57406821 Msa1257050:intron 25.0%
! TAATTTCATGCATTACTCTT+GGG + chr8_2:57406803-57406822 Msa1257050:intron 25.0%
! CTACAAACGCATTTATAATT+AGG + chr8_2:57406938-57406957 Msa1257050:intron 25.0%
! TTTCACCATATAGATATTTG+TGG + chr8_2:57407013-57407032 Msa1257050:intron 25.0%
! AACCTCTTACAATTGTATAT+TGG + chr8_2:57407124-57407143 Msa1257050:intron 25.0%
! TCTTACAATTGTATATTGGT+CGG + chr8_2:57407128-57407147 Msa1257050:intron 25.0%
! ATACTGCTAAATTTCCTAAT+AGG + chr8_2:57407306-57407325 Msa1257050:CDS 25.0%
!! ATAACTTTTATTCCCTATTC+CGG - chr8_2:57407447-57407466 None:intergenic 25.0%
!! AGAACACTATAATTTTCTCA+AGG + chr8_2:57407656-57407675 Msa1257050:CDS 25.0%
!!! AATTTGACTTGAGATACAAT+TGG + chr8_2:57407829-57407848 Msa1257050:intron 25.0%
! TTGGTTTCAAAATTTGTATC+TGG + chr8_2:57407943-57407962 Msa1257050:intron 25.0%
!!! AACCTGGAAAATTTTGATTT+TGG - chr8_2:57408154-57408173 None:intergenic 25.0%
! ATTGATGTGTTTCAAAGTAA+AGG - chr8_2:57408248-57408267 None:intergenic 25.0%
! AACCTAGTAAAGATTATTCA+AGG - chr8_2:57408659-57408678 None:intergenic 25.0%
! CATATATATAGCACAAAATG+CGG + chr8_2:57408880-57408899 Msa1257050:three_prime_UTR 25.0%
!! CATTTATTTCTTCAGATGAA+TGG - chr8_2:57409007-57409026 None:intergenic 25.0%
! CATTCATCTGAAGAAATAAA+TGG + chr8_2:57409005-57409024 Msa1257050:three_prime_UTR 25.0%
!!! AATAGCTTTATGAATGGATA+GGG + chr8_2:57409031-57409050 Msa1257050:three_prime_UTR 25.0%
!! GATGAACTAGACAATTATTT+TGG + chr8_2:57409053-57409072 Msa1257050:three_prime_UTR 25.0%
! TCACCAAGAAACAAATATAT+TGG + chr8_2:57409343-57409362 Msa1257050:intron 25.0%
!! TTGAAAGACATTTTACGATT+AGG + chr8_2:57409449-57409468 Msa1257050:intron 25.0%
! TTGGTTATAAAGAGTTTAGT+TGG + chr8_2:57409482-57409501 Msa1257050:three_prime_UTR 25.0%
TCTTGTACAATACAACTAAG+AGG + chr8_2:57403009-57403028 Msa1257050:five_prime_UTR 30.0%
! AATGTTCTTTTCTCTTCCAT+TGG + chr8_2:57403138-57403157 Msa1257050:five_prime_UTR 30.0%
GAATTAGAGAGATTGATAAG+TGG - chr8_2:57403190-57403209 None:intergenic 30.0%
TTAAGGCTTATATCAGTAGT+GGG - chr8_2:57403312-57403331 None:intergenic 30.0%
! TTTAAGGCTTATATCAGTAG+TGG - chr8_2:57403313-57403332 None:intergenic 30.0%
! CAATCTTTTCCTCAAACAAA+AGG - chr8_2:57403422-57403441 None:intergenic 30.0%
!! TTGTTGTTGTCTAGTGTTTT+GGG + chr8_2:57403707-57403726 Msa1257050:intron 30.0%
GAACATAAGAGAAAGAAAAG+AGG + chr8_2:57403961-57403980 Msa1257050:intron 30.0%
AGAAAGAAAAGAGGATAATG+TGG + chr8_2:57403970-57403989 Msa1257050:intron 30.0%
!! ATCCACTCATGTGTTTTAAA+AGG + chr8_2:57404016-57404035 Msa1257050:intron 30.0%
!!! ATCCTTTTAAAACACATGAG+TGG - chr8_2:57404021-57404040 None:intergenic 30.0%
!! ATGCTTGGATTTTAACCAAA+AGG - chr8_2:57404318-57404337 None:intergenic 30.0%
ATTTAAGAGGTCATGTATAC+TGG - chr8_2:57404352-57404371 None:intergenic 30.0%
TTGCAAGGAAAATAAGATAC+CGG - chr8_2:57404413-57404432 None:intergenic 30.0%
ATCTAGTAAGAGGAAGATAT+TGG + chr8_2:57404470-57404489 Msa1257050:intron 30.0%
AGATATTGGACAATTTAAGC+AGG + chr8_2:57404484-57404503 Msa1257050:intron 30.0%
TGAACTCAGAAAACATCTTA+AGG - chr8_2:57404560-57404579 None:intergenic 30.0%
! ATTGCATAAAATTGGCTTCT+CGG - chr8_2:57404742-57404761 None:intergenic 30.0%
ATTATACTCCTTTACATGCT+CGG + chr8_2:57404802-57404821 Msa1257050:CDS 30.0%
GAATCCTTGATTATATTCAG+GGG - chr8_2:57404961-57404980 None:intergenic 30.0%
GGAATCCTTGATTATATTCA+GGG - chr8_2:57404962-57404981 None:intergenic 30.0%
TGGAATCCTTGATTATATTC+AGG - chr8_2:57404963-57404982 None:intergenic 30.0%
GAATTGCAAATGAACATATG+AGG + chr8_2:57405261-57405280 Msa1257050:intron 30.0%
! TGATAACTTGTCTTCCTTTA+GGG - chr8_2:57405296-57405315 None:intergenic 30.0%
! ATGATAACTTGTCTTCCTTT+AGG - chr8_2:57405297-57405316 None:intergenic 30.0%
TAAACAATGCCTAATGAATG+AGG + chr8_2:57405986-57406005 Msa1257050:CDS 30.0%
CATATGTGTAACTTTAGTAG+TGG - chr8_2:57406292-57406311 None:intergenic 30.0%
TTGATATTATTCTCCTGAAG+TGG + chr8_2:57406350-57406369 Msa1257050:intron 30.0%
!! TAAGACTGTGGAATTTGTTT+TGG + chr8_2:57406439-57406458 Msa1257050:intron 30.0%
TTGTCCCTGAAATTTCAAAA+AGG - chr8_2:57406508-57406527 None:intergenic 30.0%
CTTGAAAAACTAGAAGTTCT+TGG + chr8_2:57406535-57406554 Msa1257050:CDS 30.0%
!!! CTTTGTTTTCCCTCTTTTTA+TGG + chr8_2:57406613-57406632 Msa1257050:intron 30.0%
CCAAACAATCCATAAAAAGA+GGG - chr8_2:57406625-57406644 None:intergenic 30.0%
TTAGTACTTACTACAAGACT+GGG - chr8_2:57406672-57406691 None:intergenic 30.0%
TTTAGTACTTACTACAAGAC+TGG - chr8_2:57406673-57406692 None:intergenic 30.0%
! TTTTAATACTGTTTGGGAGT+AGG + chr8_2:57406858-57406877 Msa1257050:intron 30.0%
CATCTCCACAAATATCTATA+TGG - chr8_2:57407021-57407040 None:intergenic 30.0%
GACCAATATACAATTGTAAG+AGG - chr8_2:57407129-57407148 None:intergenic 30.0%
AATGCAATATCTGTCATGTT+TGG + chr8_2:57407197-57407216 Msa1257050:intron 30.0%
AATATCTGTCATGTTTGGTT+AGG + chr8_2:57407202-57407221 Msa1257050:intron 30.0%
AAATTTAGCAGTATCAACCA+CGG - chr8_2:57407300-57407319 None:intergenic 30.0%
TTTCCTAATAGGTTAGAATC+TGG + chr8_2:57407317-57407336 Msa1257050:intron 30.0%
TAACCAGATTCTAACCTATT+AGG - chr8_2:57407323-57407342 None:intergenic 30.0%
! AAGTTTCAATTTTGTCTCTC+CGG + chr8_2:57407425-57407444 Msa1257050:intron 30.0%
AGGGAATAAAAGTTATTGAC+CGG + chr8_2:57407451-57407470 Msa1257050:intron 30.0%
! TTATTTTCAGAAACTTCTCG+AGG + chr8_2:57407536-57407555 Msa1257050:CDS 30.0%
GTCTTTGATATCTCTTTGTT+TGG + chr8_2:57407564-57407583 Msa1257050:CDS 30.0%
! TTTGATATCTCTTTGTTTGG+AGG + chr8_2:57407567-57407586 Msa1257050:CDS 30.0%
!!! TTAGTTTTGCCAGTTTAGAT+TGG + chr8_2:57407998-57408017 Msa1257050:intron 30.0%
TGAACTAATCCAATCTAAAC+TGG - chr8_2:57408010-57408029 None:intergenic 30.0%
! AGCCAAAATCAAAATTTTCC+AGG + chr8_2:57408149-57408168 Msa1257050:CDS 30.0%
ACAACTGATAACAATAACAC+AGG - chr8_2:57408286-57408305 None:intergenic 30.0%
!! CAATTCTGAAATTTGCAAGA+TGG - chr8_2:57408345-57408364 None:intergenic 30.0%
TGTGGAAAAGAATTGTTAGA+TGG - chr8_2:57408554-57408573 None:intergenic 30.0%
! ATCTAACAATTCTTTTCCAC+AGG + chr8_2:57408553-57408572 Msa1257050:CDS 30.0%
GTCCTTGAATAATCTTTACT+AGG + chr8_2:57408654-57408673 Msa1257050:exon 30.0%
AATCTTTACTAGGTTATACC+TGG + chr8_2:57408664-57408683 Msa1257050:three_prime_UTR 30.0%
TACAATTGCATACAAAACAC+TGG - chr8_2:57408917-57408936 None:intergenic 30.0%
!! TGGATGAATAGCTTTATGAA+TGG + chr8_2:57409025-57409044 Msa1257050:three_prime_UTR 30.0%
!! GAATAGCTTTATGAATGGAT+AGG + chr8_2:57409030-57409049 Msa1257050:three_prime_UTR 30.0%
!!! ACTTGATGTGTTTGGTTTTA+TGG + chr8_2:57409101-57409120 Msa1257050:intron 30.0%
!! ACGATTAGGATTTTAGTGTT+TGG + chr8_2:57409463-57409482 Msa1257050:three_prime_UTR 30.0%
CAGTGACATTTAATATGTTG+AGG - chr8_2:57409527-57409546 None:intergenic 30.0%
AATGAGAGAGAAAAGGAGAA+GGG - chr8_2:57403104-57403123 None:intergenic 35.0%
TCTGATGAATGAGAGAGAAA+AGG - chr8_2:57403111-57403130 None:intergenic 35.0%
GGAAGAGAAAAGAACATTGA+AGG - chr8_2:57403136-57403155 None:intergenic 35.0%
TAGGAATCTGTACAATCCAA+TGG - chr8_2:57403157-57403176 None:intergenic 35.0%
TTGAGGAAAAGATTGAGACA+TGG + chr8_2:57403427-57403446 Msa1257050:exon 35.0%
TGAGGAAAAGATTGAGACAT+GGG + chr8_2:57403428-57403447 Msa1257050:exon 35.0%
!! GTTGTTGTTGTCTAGTGTTT+TGG + chr8_2:57403706-57403725 Msa1257050:intron 35.0%
CACACAAAACACATCAAAGT+AGG - chr8_2:57403764-57403783 None:intergenic 35.0%
TCAGAATCTGTTGAATGCAT+AGG + chr8_2:57403867-57403886 Msa1257050:intron 35.0%
TGGATTTGTGAAATGTCCAT+TGG + chr8_2:57403990-57404009 Msa1257050:intron 35.0%
!! TTGGAGGATTAGTTCTATTG+AGG - chr8_2:57404130-57404149 None:intergenic 35.0%
TCAATAGAACTAATCCTCCA+AGG + chr8_2:57404129-57404148 Msa1257050:intron 35.0%
!!! AATTTTGAAGTGCACACCAA+CGG - chr8_2:57404232-57404251 None:intergenic 35.0%
ATGGGTGAACTCAATTTAAG+AGG - chr8_2:57404365-57404384 None:intergenic 35.0%
TTGGACAATTTAAGCAGGAA+TGG + chr8_2:57404489-57404508 Msa1257050:intron 35.0%
! GTTTTCTGAGTTCAGTTTTG+TGG + chr8_2:57404566-57404585 Msa1257050:intron 35.0%
TGTCTATCGGTCTTTCTAAT+TGG + chr8_2:57404614-57404633 Msa1257050:intron 35.0%
! TCTCTTTTCTTGTGTACAAG+AGG + chr8_2:57404643-57404662 Msa1257050:intron 35.0%
! CTCTTTTCTTGTGTACAAGA+GGG + chr8_2:57404644-57404663 Msa1257050:intron 35.0%
! TTGCATAAAATTGGCTTCTC+GGG - chr8_2:57404741-57404760 None:intergenic 35.0%
CCACATGCATTGCATAAAAT+TGG - chr8_2:57404750-57404769 None:intergenic 35.0%
! CCAATTTTATGCAATGCATG+TGG + chr8_2:57404747-57404766 Msa1257050:CDS 35.0%
TTCACCCCTGAATATAATCA+AGG + chr8_2:57404954-57404973 Msa1257050:CDS 35.0%
ACAAGCAATAGATCAAGTTC+AGG + chr8_2:57405002-57405021 Msa1257050:CDS 35.0%
CAAGCAATAGATCAAGTTCA+GGG + chr8_2:57405003-57405022 Msa1257050:CDS 35.0%
TGTTTCTTCATAACCGATCA+TGG + chr8_2:57405126-57405145 Msa1257050:intron 35.0%
GTGTCTCAAAACAATTGCAA+TGG + chr8_2:57405416-57405435 Msa1257050:intron 35.0%
CGTGAAGATTTGCATATATG+AGG + chr8_2:57405552-57405571 Msa1257050:intron 35.0%
TGGTTAATTTAGGTCCTTCT+CGG + chr8_2:57405688-57405707 Msa1257050:intron 35.0%
!!! GCACATGTTCTCTTTTTTGA+AGG - chr8_2:57405738-57405757 None:intergenic 35.0%
TCAAAAAAGAGAACATGTGC+CGG + chr8_2:57405738-57405757 Msa1257050:CDS 35.0%
ACGAATATGCCTCATTCATT+AGG - chr8_2:57405998-57406017 None:intergenic 35.0%
AATGAGGCATATTCGTGTTA+TGG + chr8_2:57406002-57406021 Msa1257050:CDS 35.0%
!! CCCTCTTTTTATGGATTGTT+TGG + chr8_2:57406622-57406641 Msa1257050:intron 35.0%
GCCAAACAATCCATAAAAAG+AGG - chr8_2:57406626-57406645 None:intergenic 35.0%
TTAGGATGTAGTGAACTACA+AGG + chr8_2:57407220-57407239 Msa1257050:intron 35.0%
AATTTAGCAGTATCAACCAC+GGG - chr8_2:57407299-57407318 None:intergenic 35.0%
! AATTTTGTCTCTCCGGAATA+GGG + chr8_2:57407432-57407451 Msa1257050:intron 35.0%
GTTCGATAGCTTTCAATTCA+AGG + chr8_2:57407503-57407522 Msa1257050:CDS 35.0%
AAGACTGCAAGACATCTAAA+AGG + chr8_2:57407598-57407617 Msa1257050:CDS 35.0%
! AATTTTCTCAAGGTTTGTGC+TGG + chr8_2:57407666-57407685 Msa1257050:intron 35.0%
CTTGTCAGATATCACATCTA+GGG + chr8_2:57407746-57407765 Msa1257050:intron 35.0%
TTGTCAGATATCACATCTAG+GGG + chr8_2:57407747-57407766 Msa1257050:intron 35.0%
!! TTGTTTGGTTTGGATGTAGT+TGG + chr8_2:57407924-57407943 Msa1257050:intron 35.0%
AGCTGGAAAACGTAATGATA+TGG + chr8_2:57408073-57408092 Msa1257050:CDS 35.0%
CAGAATTGAAGACAACAATG+AGG + chr8_2:57408357-57408376 Msa1257050:intron 35.0%
! GGTTTTACTATCACCCTTTT+GGG - chr8_2:57408386-57408405 None:intergenic 35.0%
! AGGTTTTACTATCACCCTTT+TGG - chr8_2:57408387-57408406 None:intergenic 35.0%
AAAAGGGTGATAGTAAAACC+TGG + chr8_2:57408386-57408405 Msa1257050:CDS 35.0%
! GGAAATGCAAATAGGCTTTT+CGG - chr8_2:57408452-57408471 None:intergenic 35.0%
! AAACTTCGTTGATGAGAGTT+CGG + chr8_2:57408505-57408524 Msa1257050:CDS 35.0%
TAAGACACAAGCAAAACATG+TGG - chr8_2:57408732-57408751 None:intergenic 35.0%
TATCTCTTGTACAAGGACTT+CGG - chr8_2:57408759-57408778 None:intergenic 35.0%
!!! TTGGATGGGCTATTTTGTAT+AGG + chr8_2:57408840-57408859 Msa1257050:three_prime_UTR 35.0%
! ACACATCAAGTGTCATGTTT+TGG - chr8_2:57409092-57409111 None:intergenic 35.0%
AACATGACACTTGATGTGTT+TGG + chr8_2:57409093-57409112 Msa1257050:intron 35.0%
!! AGAGTGTCAAATGATTTGCT+AGG + chr8_2:57409127-57409146 Msa1257050:intron 35.0%
!! AACCTGTTTGTTGTGTCATT+AGG + chr8_2:57409201-57409220 Msa1257050:intron 35.0%
TGAAGAGGATAGTCAAAACA+TGG + chr8_2:57409227-57409246 Msa1257050:intron 35.0%
! AGTCAAAACATGGTTGGTAT+TGG + chr8_2:57409237-57409256 Msa1257050:intron 35.0%
! GTCAAAACATGGTTGGTATT+GGG + chr8_2:57409238-57409257 Msa1257050:intron 35.0%
! ATATTTGTTTCTTGGTGAGC+TGG - chr8_2:57409341-57409360 None:intergenic 35.0%
AAAGAGAGAGAATGAGAGGA+AGG - chr8_2:57403069-57403088 None:intergenic 40.0%
ATGGAAAGAGAGAGAATGAG+AGG - chr8_2:57403073-57403092 None:intergenic 40.0%
GAATGAGAGAGAAAAGGAGA+AGG - chr8_2:57403105-57403124 None:intergenic 40.0%
!!! GATAAGTGGGTGTTTTAGCT+AGG - chr8_2:57403176-57403195 None:intergenic 40.0%
GATTGAGACATGGGAAAACA+AGG + chr8_2:57403437-57403456 Msa1257050:exon 40.0%
! CAAAGTCTGTTTTGCAACCT+TGG + chr8_2:57403602-57403621 Msa1257050:intron 40.0%
CAAAATCACAATCAGTGCCA+AGG - chr8_2:57403622-57403641 None:intergenic 40.0%
!!! GTTGTCTAGTGTTTTGGGAT+TGG + chr8_2:57403712-57403731 Msa1257050:intron 40.0%
!! CACATGAGTGGATTAACCAA+TGG - chr8_2:57404009-57404028 None:intergenic 40.0%
ATGTTTAAGAGTTGCAGCCT+TGG - chr8_2:57404149-57404168 None:intergenic 40.0%
CTGGTAAGTAAGACAATGCT+TGG - chr8_2:57404333-57404352 None:intergenic 40.0%
!!! GACAGATACTGTCGATTTTG+AGG + chr8_2:57404824-57404843 Msa1257050:CDS 40.0%
TTGAGGATCAGAGAGTTTCA+AGG + chr8_2:57404841-57404860 Msa1257050:CDS 40.0%
GATAATGCTTATGCTGCATC+TGG + chr8_2:57404927-57404946 Msa1257050:CDS 40.0%
ATTCCAAAAGGCTGTTGATG+AGG + chr8_2:57404977-57404996 Msa1257050:CDS 40.0%
! TATCCTCATCAACAGCCTTT+TGG - chr8_2:57404983-57405002 None:intergenic 40.0%
GCAGCTTTCTGAATTAGAGA+TGG - chr8_2:57405033-57405052 None:intergenic 40.0%
TCAGAAAGCTGCGTTCAATT+TGG + chr8_2:57405041-57405060 Msa1257050:CDS 40.0%
ACCTGTCAAATCACTAGCAT+CGG - chr8_2:57405072-57405091 None:intergenic 40.0%
ATGCTAGTGATTTGACAGGT+TGG + chr8_2:57405072-57405091 Msa1257050:intron 40.0%
! GTCTTCCTTTAGGGAAACAA+AGG - chr8_2:57405287-57405306 None:intergenic 40.0%
ATCTACTGCAGCTCAAAAAC+AGG + chr8_2:57405618-57405637 Msa1257050:intron 40.0%
CAAAAAAGAGAACATGTGCC+GGG + chr8_2:57405739-57405758 Msa1257050:CDS 40.0%
! AACAGGATTGCTGTTGTTCA+TGG - chr8_2:57405818-57405837 None:intergenic 40.0%
TTCAGAAGAAGCAGAGAAAC+AGG - chr8_2:57405835-57405854 None:intergenic 40.0%
! TTTCTCTGCTTCTTCTGAAG+AGG + chr8_2:57405836-57405855 Msa1257050:CDS 40.0%
TTACGAAAGTGAAACTCCGA+TGG + chr8_2:57405866-57405885 Msa1257050:CDS 40.0%
! GACATGGAAGCATGCTTATT+AGG + chr8_2:57405904-57405923 Msa1257050:CDS 40.0%
CCAGTGTAATCACTAAGCAT+GGG - chr8_2:57406035-57406054 None:intergenic 40.0%
TGGCATGAATTTCTCTTCTC+AGG + chr8_2:57406052-57406071 Msa1257050:CDS 40.0%
GGCATGAATTTCTCTTCTCA+GGG + chr8_2:57406053-57406072 Msa1257050:CDS 40.0%
TAAGATCTTCGTACCACTTC+AGG - chr8_2:57406366-57406385 None:intergenic 40.0%
GAAATTTCAGGGACAAGTCT+CGG + chr8_2:57406512-57406531 Msa1257050:intron 40.0%
GGTTAATTGCTATGCACTGA+TGG - chr8_2:57407108-57407127 None:intergenic 40.0%
ATTTAGCAGTATCAACCACG+GGG - chr8_2:57407298-57407317 None:intergenic 40.0%
! CAATTTTGTCTCTCCGGAAT+AGG + chr8_2:57407431-57407450 Msa1257050:intron 40.0%
CGATAGCTTTCAATTCAAGG+AGG + chr8_2:57407506-57407525 Msa1257050:CDS 40.0%
TTTCAGAAACTTCTCGAGGA+AGG + chr8_2:57407540-57407559 Msa1257050:CDS 40.0%
TAGATGTCTTGCAGTCTTCA+GGG - chr8_2:57407596-57407615 None:intergenic 40.0%
TTAGATGTCTTGCAGTCTTC+AGG - chr8_2:57407597-57407616 None:intergenic 40.0%
GCTTGTCAGATATCACATCT+AGG + chr8_2:57407745-57407764 Msa1257050:intron 40.0%
ATTCTTCTACGAGTGCAGAA+AGG + chr8_2:57408041-57408060 Msa1257050:intron 40.0%
! GACAAGAGATTTTGCTAACC+TGG - chr8_2:57408170-57408189 None:intergenic 40.0%
AACAATGAGGAGTCCCAAAA+GGG + chr8_2:57408370-57408389 Msa1257050:CDS 40.0%
CATTGCGAGGAAATGCAAAT+AGG - chr8_2:57408460-57408479 None:intergenic 40.0%
CTATTTGCATTTCCTCGCAA+TGG + chr8_2:57408458-57408477 Msa1257050:CDS 40.0%
GAGCAACCAAGCTAGAATTT+GGG - chr8_2:57408592-57408611 None:intergenic 40.0%
TGAGCAACCAAGCTAGAATT+TGG - chr8_2:57408593-57408612 None:intergenic 40.0%
!! AATTCTAGCTTGGTTGCTCA+AGG + chr8_2:57408593-57408612 Msa1257050:CDS 40.0%
! ACCTGGAAGAGTATGTACTA+TGG + chr8_2:57408681-57408700 Msa1257050:three_prime_UTR 40.0%
TCCATAGTACATACTCTTCC+AGG - chr8_2:57408685-57408704 None:intergenic 40.0%
TCCTTGTACAAGAGATACGA+TGG + chr8_2:57408762-57408781 Msa1257050:three_prime_UTR 40.0%
ACTTGCAACCTTATTGAGCT+TGG + chr8_2:57408799-57408818 Msa1257050:three_prime_UTR 40.0%
TTGGCAATCCAAGCTCAATA+AGG - chr8_2:57408810-57408829 None:intergenic 40.0%
TTATTGAGCTTGGATTGCCA+AGG + chr8_2:57408809-57408828 Msa1257050:three_prime_UTR 40.0%
TATTGAGCTTGGATTGCCAA+GGG + chr8_2:57408810-57408829 Msa1257050:three_prime_UTR 40.0%
! ATGAATGGTGTTTCTGTGGA+AGG - chr8_2:57408992-57409011 None:intergenic 40.0%
! TCAGATGAATGGTGTTTCTG+TGG - chr8_2:57408996-57409015 None:intergenic 40.0%
CACCTAATGACACAACAAAC+AGG - chr8_2:57409206-57409225 None:intergenic 40.0%
!! CTGTTTGTTGTGTCATTAGG+TGG + chr8_2:57409204-57409223 Msa1257050:intron 40.0%
GAGGATAGTCAAAACATGGT+TGG + chr8_2:57409231-57409250 Msa1257050:intron 40.0%
AAGAGTTTAGTTGGCAAGTG+AGG + chr8_2:57409491-57409510 Msa1257050:three_prime_UTR 40.0%
AGAGAGAATGAGAGGAAGGA+AGG - chr8_2:57403065-57403084 None:intergenic 45.0%
AGAGAGAAAAGGAGAAGGGA+AGG - chr8_2:57403100-57403119 None:intergenic 45.0%
GTAACTCCACAGTGAAAGCA+AGG - chr8_2:57403464-57403483 None:intergenic 45.0%
TTTAAGAGTTGCAGCCTTGG+AGG - chr8_2:57404146-57404165 None:intergenic 45.0%
AAAGTGGTGTGCCTATTGCA+AGG - chr8_2:57404704-57404723 None:intergenic 45.0%
TTGCAATAGGCACACCACTT+TGG + chr8_2:57404703-57404722 Msa1257050:intron 45.0%
! CATAAAATTGGCTTCTCGGG+TGG - chr8_2:57404738-57404757 None:intergenic 45.0%
GTATCTGTCCGAGCATGTAA+AGG - chr8_2:57404813-57404832 None:intergenic 45.0%
ATGCTTATGCTGCATCTGGA+TGG + chr8_2:57404931-57404950 Msa1257050:CDS 45.0%
GAAAGCTGCGTTCAATTTGG+CGG + chr8_2:57405044-57405063 Msa1257050:CDS 45.0%
ACCGATGCTAGTGATTTGAC+AGG + chr8_2:57405068-57405087 Msa1257050:CDS 45.0%
AAGGACAATGCTGCCATGAT+CGG - chr8_2:57405142-57405161 None:intergenic 45.0%
! TGAGGCCTTTGTTTCCCTAA+AGG + chr8_2:57405279-57405298 Msa1257050:intron 45.0%
CCTATCTCAACAGAGACCAT+CGG - chr8_2:57405885-57405904 None:intergenic 45.0%
GTCTCTGTTGAGATAGGACA+TGG + chr8_2:57405888-57405907 Msa1257050:CDS 45.0%
CCCATGCTTAGTGATTACAC+TGG + chr8_2:57406032-57406051 Msa1257050:CDS 45.0%
GCCAGTGTAATCACTAAGCA+TGG - chr8_2:57406036-57406055 None:intergenic 45.0%
ACACTGCTGCAAACCATGTT+AGG - chr8_2:57406725-57406744 None:intergenic 45.0%
! TGGTTTGCAGCAGTGTTGTT+TGG + chr8_2:57406729-57406748 Msa1257050:intron 45.0%
GCATTACTCTTGGGACTTTC+TGG + chr8_2:57406812-57406831 Msa1257050:intron 45.0%
CGGGGAGATACTTCAGTAAT+TGG - chr8_2:57407280-57407299 None:intergenic 45.0%
! ATTACTGAAGTATCTCCCCG+TGG + chr8_2:57407280-57407299 Msa1257050:CDS 45.0%
TGCTGCACATACAACAATGC+CGG - chr8_2:57407473-57407492 None:intergenic 45.0%
CAGAAAGGTGGAAACAAAGC+TGG + chr8_2:57408056-57408075 Msa1257050:intron 45.0%
CGCAACATTACTTGATGCCA+CGG - chr8_2:57408108-57408127 None:intergenic 45.0%
CAACAATGAGGAGTCCCAAA+AGG + chr8_2:57408369-57408388 Msa1257050:CDS 45.0%
GTGATAGTAAAACCTGGCAC+TGG + chr8_2:57408392-57408411 Msa1257050:CDS 45.0%
! ATAGTAAAACCTGGCACTGG+TGG + chr8_2:57408395-57408414 Msa1257050:CDS 45.0%
TTTGCATTTCCTCGCAATGG+TGG + chr8_2:57408461-57408480 Msa1257050:CDS 45.0%
CGAGTATACTGAGCTACTAC+TGG - chr8_2:57408624-57408643 None:intergenic 45.0%
GCCATCGTATCTCTTGTACA+AGG - chr8_2:57408766-57408785 None:intergenic 45.0%
! ATGGTGTTTCTGTGGAAGGA+GGG - chr8_2:57408988-57409007 None:intergenic 45.0%
! AATGGTGTTTCTGTGGAAGG+AGG - chr8_2:57408989-57409008 None:intergenic 45.0%
TGGTCGCAAATGTGTAGCTT+TGG + chr8_2:57409172-57409191 Msa1257050:intron 45.0%
! TGTGTCATTAGGTGGTGAAG+AGG + chr8_2:57409212-57409231 Msa1257050:intron 45.0%
! AAGGAGAAGGGAAGGTGCAA+TGG - chr8_2:57403092-57403111 None:intergenic 50.0%
CAAGGACCTTGCTTTCACTG+TGG + chr8_2:57403455-57403474 Msa1257050:CDS 50.0%
AATGGTGAAGTCGATGCCGT+TGG + chr8_2:57404213-57404232 Msa1257050:intron 50.0%
! CATAGCAACGCCCTTTTGCA+AGG - chr8_2:57404428-57404447 None:intergenic 50.0%
GCAATGCATGTGGATCTCGA+TGG + chr8_2:57404757-57404776 Msa1257050:CDS 50.0%
ATGCATGTGGATCTCGATGG+AGG + chr8_2:57404760-57404779 Msa1257050:CDS 50.0%
TGGATCTCGATGGAGGACAA+AGG + chr8_2:57404767-57404786 Msa1257050:CDS 50.0%
GGATCTCGATGGAGGACAAA+GGG + chr8_2:57404768-57404787 Msa1257050:CDS 50.0%
TCCTTCTCGGTCAGTAGTCT+GGG + chr8_2:57405701-57405720 Msa1257050:CDS 50.0%
! GTCAGTAGTCTGGGATACTG+CGG + chr8_2:57405710-57405729 Msa1257050:CDS 50.0%
AGAAGAATGCTTCAGACGCC+CGG - chr8_2:57405760-57405779 None:intergenic 50.0%
CCGATGGTCTCTGTTGAGAT+AGG + chr8_2:57405882-57405901 Msa1257050:CDS 50.0%
TCGTCACGAGCTATAGAGCT+AGG - chr8_2:57405933-57405952 None:intergenic 50.0%
CTCTTCTCAGGGAGTTGCAA+AGG + chr8_2:57406064-57406083 Msa1257050:CDS 50.0%
GCAAAGGTCAGAAACTCTGC+TGG + chr8_2:57406080-57406099 Msa1257050:CDS 50.0%
CTTCTACGAGTGCAGAAAGG+TGG + chr8_2:57408044-57408063 Msa1257050:intron 50.0%
TGATATGGAATCTCCTGCCG+TGG + chr8_2:57408088-57408107 Msa1257050:CDS 50.0%
ACATTACTTGATGCCACGGC+AGG - chr8_2:57408104-57408123 None:intergenic 50.0%
GGTGGCAAAGAAGCTGTAGA+TGG + chr8_2:57408413-57408432 Msa1257050:CDS 50.0%
! CGTTGATGAGAGTTCGGATC+AGG + chr8_2:57408511-57408530 Msa1257050:CDS 50.0%
CCAAGCTAGAATTTGGGAGC+AGG - chr8_2:57408586-57408605 None:intergenic 50.0%
! CCTGCTCCCAAATTCTAGCT+TGG + chr8_2:57408583-57408602 Msa1257050:CDS 50.0%
GATTGCCAAGGGATGCAAGT+TGG + chr8_2:57408821-57408840 Msa1257050:three_prime_UTR 50.0%
! CCAAGGGATGCAAGTTGGAT+GGG + chr8_2:57408826-57408845 Msa1257050:three_prime_UTR 50.0%
GGCACACCACTTTGGCGTAA+CGG + chr8_2:57404711-57404730 Msa1257050:intron 55.0%
GCACACCACTTTGGCGTAAC+GGG + chr8_2:57404712-57404731 Msa1257050:CDS 55.0%
GTCCTTCTCGGTCAGTAGTC+TGG + chr8_2:57405700-57405719 Msa1257050:CDS 55.0%
TCCCAGACTACTGACCGAGA+AGG - chr8_2:57405705-57405724 None:intergenic 55.0%
AGCTCGTGACGAAGAGTCTG+AGG + chr8_2:57405941-57405960 Msa1257050:CDS 55.0%
GCTGCTCCTGTTGCAGTCTT+GGG - chr8_2:57406106-57406125 None:intergenic 55.0%
AGCTGCTCCTGTTGCAGTCT+TGG - chr8_2:57406107-57406126 None:intergenic 55.0%
TGCAACAGGAGCAGCTTGTG+TGG + chr8_2:57406111-57406130 Msa1257050:CDS 55.0%
ATGTGCAAGCCACCATTGCG+AGG - chr8_2:57408473-57408492 None:intergenic 55.0%
! CAATGGTGGCTTGCACATGC+TGG + chr8_2:57408475-57408494 Msa1257050:CDS 55.0%
! GCCAAGGGATGCAAGTTGGA+TGG + chr8_2:57408825-57408844 Msa1257050:three_prime_UTR 55.0%
CCCATCCAACTTGCATCCCT+TGG - chr8_2:57408829-57408848 None:intergenic 55.0%
TGCTGGCCCAAGACTGCAAC+AGG + chr8_2:57406097-57406116 Msa1257050:CDS 60.0%
GCTTCTTTGCCACCAGTGCC+AGG - chr8_2:57408407-57408426 None:intergenic 60.0%
GGTGGCCCGTTACGCCAAAG+TGG - chr8_2:57404720-57404739 None:intergenic 65.0%
GGGAGCAGGAGCTCTGCCTG+TGG - chr8_2:57408572-57408591 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 57402981 57409562 57402981 ID=Msa1257050;Name=Msa1257050
chr8_2 mRNA 57402981 57409562 57402981 ID=Msa1257050-mRNA-1;Parent=Msa1257050;Name=Msa1257050-mRNA-1;_AED=0.05;_eAED=0.05;_QI=465|1|1|1|0.87|0.77|9|544|542
chr8_2 exon 57402981 57403485 57402981 ID=Msa1257050-mRNA-1:exon:17721;Parent=Msa1257050-mRNA-1
chr8_2 exon 57404712 57405089 57404712 ID=Msa1257050-mRNA-1:exon:17722;Parent=Msa1257050-mRNA-1
chr8_2 exon 57405700 57406132 57405700 ID=Msa1257050-mRNA-1:exon:17723;Parent=Msa1257050-mRNA-1
chr8_2 exon 57406522 57406594 57406522 ID=Msa1257050-mRNA-1:exon:17724;Parent=Msa1257050-mRNA-1
chr8_2 exon 57407224 57407327 57407224 ID=Msa1257050-mRNA-1:exon:17725;Parent=Msa1257050-mRNA-1
chr8_2 exon 57407491 57407677 57407491 ID=Msa1257050-mRNA-1:exon:17726;Parent=Msa1257050-mRNA-1
chr8_2 exon 57408059 57408170 57408059 ID=Msa1257050-mRNA-1:exon:17727;Parent=Msa1257050-mRNA-1
chr8_2 exon 57408360 57409097 57408360 ID=Msa1257050-mRNA-1:exon:17728;Parent=Msa1257050-mRNA-1
chr8_2 exon 57409455 57409562 57409455 ID=Msa1257050-mRNA-1:exon:17729;Parent=Msa1257050-mRNA-1
chr8_2 five_prime_UTR 57402981 57403445 57402981 ID=Msa1257050-mRNA-1:five_prime_utr;Parent=Msa1257050-mRNA-1
chr8_2 CDS 57403446 57403485 57403446 ID=Msa1257050-mRNA-1:cds;Parent=Msa1257050-mRNA-1
chr8_2 CDS 57404712 57405089 57404712 ID=Msa1257050-mRNA-1:cds;Parent=Msa1257050-mRNA-1
chr8_2 CDS 57405700 57406132 57405700 ID=Msa1257050-mRNA-1:cds;Parent=Msa1257050-mRNA-1
chr8_2 CDS 57406522 57406594 57406522 ID=Msa1257050-mRNA-1:cds;Parent=Msa1257050-mRNA-1
chr8_2 CDS 57407224 57407327 57407224 ID=Msa1257050-mRNA-1:cds;Parent=Msa1257050-mRNA-1
chr8_2 CDS 57407491 57407677 57407491 ID=Msa1257050-mRNA-1:cds;Parent=Msa1257050-mRNA-1
chr8_2 CDS 57408059 57408170 57408059 ID=Msa1257050-mRNA-1:cds;Parent=Msa1257050-mRNA-1
chr8_2 CDS 57408360 57408661 57408360 ID=Msa1257050-mRNA-1:cds;Parent=Msa1257050-mRNA-1
chr8_2 three_prime_UTR 57408662 57409097 57408662 ID=Msa1257050-mRNA-1:three_prime_utr;Parent=Msa1257050-mRNA-1
chr8_2 three_prime_UTR 57409455 57409562 57409455 ID=Msa1257050-mRNA-1:three_prime_utr;Parent=Msa1257050-mRNA-1
Gene Sequence

>Msa1257050

ATGGGAAAACAAGGACCTTGCTTTCACTGTGGAGTTACAAGCACACCACTTTGGCGTAACGGGCCACCCGAGAAGCCAATTTTATGCAATGCATGTGGATCTCGATGGAGGACAAAGGGAACACTTGCAAATTATACTCCTTTACATGCTCGGACAGATACTGTCGATTTTGAGGATCAGAGAGTTTCAAGGTTAAAGATTGTATCATTAAATAAGAACAAAGAAGTGAAATTGGTTAAACGAAAGCAGAACTATGATAATGCTTATGCTGCATCTGGATGGTTCACCCCTGAATATAATCAAGGATTCCAAAAGGCTGTTGATGAGGATACAAGCAATAGATCAAGTTCAGGGTCAGCCATCTCTAATTCAGAAAGCTGCGTTCAATTTGGCGGCACCGATGCTAGTGATTTGACAGGTCCTTCTCGGTCAGTAGTCTGGGATACTGCGGCGCCTTCAAAAAAGAGAACATGTGCCGGGCGTCTGAAGCATTCTTCTGTTGAAAAGCTCACACAAGACTTGTGTACTATTCTCCATGAACAACAGCAATCCTGTTTCTCTGCTTCTTCTGAAGAGGAACTTCTTTACGAAAGTGAAACTCCGATGGTCTCTGTTGAGATAGGACATGGAAGCATGCTTATTAGGCATCCTAGCTCTATAGCTCGTGACGAAGAGTCTGAGGCTAGCTCTCTTTCAGTTGATAATAAACAATGCCTAATGAATGAGGCATATTCGTGTTATGGTTCAATTCCCATGCTTAGTGATTACACTGGCATGAATTTCTCTTCTCAGGGAGTTGCAAAGGTCAGAAACTCTGCTGGCCCAAGACTGCAACAGGAGCAGCTTGTGTGGGACAAGTCTCGGCTTGAAAAACTAGAAGTTCTTGGAAATCATGATTCATCACTGTGCTCAATAGATTTAAATGATGTAGTGAACTACAAGGAGTTTTCAAGAAACTTGACAAATGAAGAGCAGCACCAATTACTGAAGTATCTCCCCGTGGTTGATACTGCTAAATTTCCTAATAGCATTAAAATTATGTTCGATAGCTTTCAATTCAAGGAGGAGTTAACTTATTTTCAGAAACTTCTCGAGGAAGGTGTCTTTGATATCTCTTTGTTTGGAGGAGACCCTGAAGACTGCAAGACATCTAAAAGGCTTGCATTATCTAACTTGTCAAAGTCAAAATGTGTAGAACACTATAATTTTCTCAAGAAAGGTGGAAACAAAGCTGGAAAACGTAATGATATGGAATCTCCTGCCGTGGCATCAAGTAATGTTGCGAATGTTAAGAGATTGCGTGTCAGCCAAAATCAAAATTTTCCAGAATTGAAGACAACAATGAGGAGTCCCAAAAGGGTGATAGTAAAACCTGGCACTGGTGGCAAAGAAGCTGTAGATGGCTCTAGCATCAGTCCGAAAAGCCTATTTGCATTTCCTCGCAATGGTGGCTTGCACATGCTGGATTCTTTAAACTTCGTTGATGAGAGTTCGGATCAGGATCTGCTGCTAGAGTTTCCATCTAACAATTCTTTTCCACAGGCAGAGCTCCTGCTCCCAAATTCTAGCTTGGTTGCTCAAGGAAGCACCAGTAGTAGCTCAGTATACTCGCATGTTACTCGTCCTTGA
Protein sequence

>Msa1257050

MGKQGPCFHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGTLANYTPLHARTDTVDFEDQRVSRLKIVSLNKNKEVKLVKRKQNYDNAYAASGWFTPEYNQGFQKAVDEDTSNRSSSGSAISNSESCVQFGGTDASDLTGPSRSVVWDTAAPSKKRTCAGRLKHSSVEKLTQDLCTILHEQQQSCFSASSEEELLYESETPMVSVEIGHGSMLIRHPSSIARDEESEASSLSVDNKQCLMNEAYSCYGSIPMLSDYTGMNFSSQGVAKVRNSAGPRLQQEQLVWDKSRLEKLEVLGNHDSSLCSIDLNDVVNYKEFSRNLTNEEQHQLLKYLPVVDTAKFPNSIKIMFDSFQFKEELTYFQKLLEEGVFDISLFGGDPEDCKTSKRLALSNLSKSKCVEHYNFLKKGGNKAGKRNDMESPAVASSNVANVKRLRVSQNQNFPELKTTMRSPKRVIVKPGTGGKEAVDGSSISPKSLFAFPRNGGLHMLDSLNFVDESSDQDLLLEFPSNNSFPQAELLLPNSSLVAQGSTSSSSVYSHVTRP*