AlfalfaGEDB | Msa1257160

M. sativa cultivar zhongmu-4 / Msa1257160

KEGG: K09338
GO: GO:0000003 GO:0000902 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008283 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009641 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009735 GO:0009755 GO:0009791 GO:0009826 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0010016 GO:0010017 GO:0010022 GO:0010033 GO:0010073 GO:0010154 GO:0010218 GO:0010468 GO:0010556 GO:0010558 GO:0010582 GO:0010605 GO:0010629 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043621 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0046983 GO:0048364 GO:0048367 GO:0048438 GO:0048467 GO:0048507 GO:0048519 GO:0048523 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0070887 GO:0071214 GO:0071310 GO:0071365 GO:0071478 GO:0071482 GO:0071489 GO:0071495 GO:0071840 GO:0080090 GO:0080127 GO:0090567 GO:0097159 GO:0099402 GO:0104004 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1905328 GO:2000112 GO:2000113 GO:2001141
PFAM: PF04618.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1257160	XP_003608673.2	94.286	280	8	3	1	272	1	280	0.0	530

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1257160	sp\|Q05466\|HAT4_ARATH	61.034	290	84	6	2	271	1	281	3.82e-101	299

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa1257160	TF	HB-HD-ZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1257160	MtrunA17_Chr4g0055851	94.286	280	8	3	1	272	1	280	0.0	530
Msa1257160	MtrunA17_Chr5g0399491	71.477	298	52	9	2	271	1	293	1.33e-135	384
Msa1257160	MtrunA17_Chr8g0335131	57.843	306	82	12	3	265	1	302	1.99e-88	265
Msa1257160	MtrunA17_Chr7g0258831	65.054	186	55	2	51	227	89	273	7.82e-73	225
Msa1257160	MtrunA17_Chr1g0175651	60.000	205	64	5	50	242	82	280	2.64e-69	216
Msa1257160	MtrunA17_Chr2g0308611	74.000	150	35	2	92	238	176	324	1.01e-67	213
Msa1257160	MtrunA17_Chr4g0054421	75.573	131	31	1	96	226	110	239	5.85e-63	199
Msa1257160	MtrunA17_Chr5g0400781	71.774	124	34	1	104	227	114	236	2.28e-58	187
Msa1257160	MtrunA17_Chr1g0151971	61.151	139	44	3	112	241	129	266	2.26e-52	172
Msa1257160	MtrunA17_Chr4g0044091	62.097	124	42	1	107	225	59	182	1.90e-46	154

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1257160	AT4G16780.1	61.034	290	84	6	2	271	1	281	3.89e-102	299
Msa1257160	AT5G47370.1	60.068	293	57	12	2	260	1	267	5.33e-96	284
Msa1257160	AT4G17460.1	57.383	298	80	11	2	271	1	279	3.37e-95	281
Msa1257160	AT3G60390.1	63.750	240	59	7	49	265	75	309	1.82e-88	266
Msa1257160	AT2G44910.1	61.277	235	54	6	18	227	55	277	1.38e-82	251
Msa1257160	AT5G06710.1	59.091	198	63	4	73	255	135	329	2.00e-68	215
Msa1257160	AT4G37790.1	76.423	123	28	1	104	226	117	238	2.47e-61	195
Msa1257160	AT2G22800.1	71.875	128	32	2	102	226	99	225	2.95e-58	187
Msa1257160	AT2G01430.1	52.326	172	65	4	74	234	95	260	5.67e-46	155
Msa1257160	AT1G70920.2	57.480	127	46	1	101	227	27	145	5.17e-37	129

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Find 99 sgRNAs with CRISPR-Local

Find 275 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTAACGGAGGAAAAT+AGG	0.298194	8_2:+57597247	Msa1257160:CDS
AAAATGCATACCTGAAGTGA+AGG	0.585786	8_2:-57596422	None:intergenic
AAAGGAGGAGGAAATGGGGT+GGG	0.551653	8_2:-57596175	None:intergenic
AAATAGAAAGGAGGAGGAAA+TGG	0.364859	8_2:-57596181	None:intergenic
AACCAGACTTCTACTTGTCT+TGG	0.452242	8_2:-57597070	None:intergenic
AAGAAGACGCTGAAACTGCT+AGG	0.546613	8_2:+57596839	Msa1257160:CDS
AAGGAATGGAGTATGAATAT+GGG	0.535565	8_2:-57597805	None:intergenic
AAGGTGCTGTGAAAATCTAA+CGG	0.636807	8_2:+57597236	Msa1257160:CDS
AATAGAAAGGAGGAGGAAAT+GGG	0.420491	8_2:-57596180	None:intergenic
AATCATGTGCTAGGATATTA+TGG	0.325011	8_2:+57597587	Msa1257160:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTTGAAGAATTTGTGAGTT+TGG	-	chr8_2:57596292-57596311	None:intergenic	30.0%
TTTCTTCAAGAATAGCTGAT+TGG	-	chr8_2:57596888-57596907	None:intergenic	30.0%
AAAATCTAACGGAGGAAAAT+AGG	+	chr8_2:57597247-57597266	Msa1257160:CDS	30.0%
CATTTGCATGTAAAATTGTG+GGG	-	chr8_2:57597316-57597335	None:intergenic	30.0%
GTCATTTGCATGTAAAATTG+TGG	-	chr8_2:57597318-57597337	None:intergenic	30.0%
AATCATGTGCTAGGATATTA+TGG	+	chr8_2:57597587-57597606	Msa1257160:three_prime_UTR	30.0%
TCTATGATAAGCCTTGAAAT+GGG	-	chr8_2:57597708-57597727	None:intergenic	30.0%
ATGAATATGGGCGAATTATT+AGG	-	chr8_2:57597796-57597815	None:intergenic	30.0%
GTTTGAAGAATTTGTGAGTT+TGG	-	chr8_2:57596292-57596311	None:intergenic	30.0%
TTTCTTCAAGAATAGCTGAT+TGG	-	chr8_2:57596888-57596907	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	57596134	57597821	57596134	ID=Msa1257160;Name=Msa1257160
chr8_2	mRNA	57596134	57597821	57596134	ID=Msa1257160-mRNA-1;Parent=Msa1257160;Name=Msa1257160-mRNA-1;_AED=0.11;_eAED=0.11;_QI=194\|1\|1\|1\|1\|1\|4\|300\|272
chr8_2	exon	57596134	57596433	57596134	ID=Msa1257160-mRNA-1:exon:17787;Parent=Msa1257160-mRNA-1
chr8_2	exon	57596632	57596936	57596632	ID=Msa1257160-mRNA-1:exon:17788;Parent=Msa1257160-mRNA-1
chr8_2	exon	57597031	57597110	57597031	ID=Msa1257160-mRNA-1:exon:17789;Parent=Msa1257160-mRNA-1
chr8_2	exon	57597194	57597821	57597194	ID=Msa1257160-mRNA-1:exon:17790;Parent=Msa1257160-mRNA-1
chr8_2	five_prime_UTR	57596134	57596327	57596134	ID=Msa1257160-mRNA-1:five_prime_utr;Parent=Msa1257160-mRNA-1
chr8_2	CDS	57596328	57596433	57596328	ID=Msa1257160-mRNA-1:cds;Parent=Msa1257160-mRNA-1
chr8_2	CDS	57596632	57596936	57596632	ID=Msa1257160-mRNA-1:cds;Parent=Msa1257160-mRNA-1
chr8_2	CDS	57597031	57597110	57597031	ID=Msa1257160-mRNA-1:cds;Parent=Msa1257160-mRNA-1
chr8_2	CDS	57597194	57597521	57597194	ID=Msa1257160-mRNA-1:cds;Parent=Msa1257160-mRNA-1
chr8_2	three_prime_UTR	57597522	57597821	57597522	ID=Msa1257160-mRNA-1:three_prime_utr;Parent=Msa1257160-mRNA-1

Gene Sequence

>Msa1257160

ATGATGATGGTTGAAAAGGAAGACTTGGGTTTGAGTCTTAGCTTGAACTTCTTTCACAATAACTCTTCTCCTCACAAACCATCTTCCATCCAAACCTTCACTTCAGATCGAAACTTGGAAACATGCAGAGGAGAGAGTGGAAAATACCTACGAGGAATCGACGTGAATCGGTTACCATCTACAGCTATTGAATGCCAAGAGGAAGAAGAAGCAGGGGTTTCATCTCCAAACAGCACAGTTTCAAGTGTTAGTGGAAAAAGAAGCTTGAGAGAAGAAGATCATGACGTGGAAAATAGAGGAAATATCAGTGATGAAGAAGACGCTGAAACTGCTAGGAAAAAACTTAGACTCTCTAAAGACCAATCAGCTATTCTTGAAGAAACTTTCAAAGAACACAATACCCTTAATCCCAAGCAAAAGTTGGCACTTGCAAAGCAACTTGGTCTTCGTCCAAGACAAGTAGAAGTCTGGTTCCAAAACAGAAGAGCTAGGACGAAGCTGAAGCAAACAGAGGTTGATTGTGAAGTGTTGAAAAGGTGCTGTGAAAATCTAACGGAGGAAAATAGGAGACTACAGAAGGAAGTTCAAGAGCTTAGAGCACTGAAACTTTCCCCACAATTTTACATGCAAATGACTCCACCAACTACTCTTACTATGTGCCCTTCTTGTGAACGTGTGGCTGTTCCATCTAATGCTTGTGTTGATGCATCTAACCGTCACCATTCTATGGCCCAAGCCCATCCTCGGGCTGTGCCTATAGGCCCATGGGCTTCTGCTGCTCCAGTCACAAATAGGATGTTTGATGTTTTCCGTCAATGA

Protein sequence

>Msa1257160

MMMVEKEDLGLSLSLNFFHNNSSPHKPSSIQTFTSDRNLETCRGESGKYLRGIDVNRLPSTAIECQEEEEAGVSSPNSTVSSVSGKRSLREEDHDVENRGNISDEEDAETARKKLRLSKDQSAILEETFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKEVQELRALKLSPQFYMQMTPPTTLTMCPSCERVAVPSNACVDASNRHHSMAQAHPRAVPIGPWASAAPVTNRMFDVFRQ*