Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1258010 | KEH39580.1 | 48.930 | 327 | 116 | 8 | 4 | 296 | 47 | 356 | 1.04e-82 | 263 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1258010 | sp|Q5KQI4|Y5814_ORYSJ | 62.500 | 96 | 36 | 0 | 19 | 114 | 113 | 208 | 1.88e-39 | 142 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1258010 | A0A072VN61 | 48.930 | 327 | 116 | 8 | 4 | 296 | 47 | 356 | 4.95e-83 | 263 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1258010 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1258010 | MtrunA17_Chr2g0332121 | 48.930 | 327 | 116 | 8 | 4 | 296 | 101 | 410 | 2.60e-86 | 264 |
| Msa1258010 | MtrunA17_Chr4g0002411 | 67.619 | 105 | 34 | 0 | 10 | 114 | 45 | 149 | 5.35e-47 | 155 |
| Msa1258010 | MtrunA17_Chr4g0056751 | 72.340 | 94 | 20 | 1 | 183 | 276 | 112 | 199 | 6.46e-34 | 125 |
| Msa1258010 | MtrunA17_Chr3g0133791 | 45.833 | 96 | 52 | 0 | 19 | 114 | 108 | 203 | 1.18e-24 | 99.4 |
| Msa1258010 | MtrunA17_Chr8g0375001 | 53.659 | 82 | 38 | 0 | 31 | 112 | 34 | 115 | 2.27e-24 | 96.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1258010 | AT5G58280.1 | 55.556 | 108 | 48 | 0 | 7 | 114 | 89 | 196 | 8.12e-36 | 130 |
| Msa1258010 | AT5G58280.2 | 55.556 | 108 | 48 | 0 | 7 | 114 | 122 | 229 | 1.18e-35 | 130 |
| Msa1258010 | AT5G58280.3 | 55.556 | 108 | 48 | 0 | 7 | 114 | 121 | 228 | 1.22e-35 | 130 |
| Msa1258010 | AT3G19184.1 | 46.875 | 96 | 51 | 0 | 19 | 114 | 104 | 199 | 3.47e-22 | 94.0 |
| Msa1258010 | AT3G19184.2 | 46.875 | 96 | 51 | 0 | 19 | 114 | 104 | 199 | 4.27e-22 | 94.0 |
| Msa1258010 | AT5G42700.1 | 44.681 | 94 | 52 | 0 | 19 | 112 | 104 | 197 | 6.54e-22 | 92.0 |
| Msa1258010 | AT5G42700.2 | 44.681 | 94 | 52 | 0 | 19 | 112 | 59 | 152 | 6.86e-22 | 90.9 |
Find 44 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTCATTCTTACCTTCTT+TGG | 0.170238 | 8_2:-59108648 | None:intergenic |
| TCAATTTGTTCTTCCCCTTT+TGG | 0.185000 | 8_2:-59108464 | None:intergenic |
| ATTTGCATTGGAACATAAAT+TGG | 0.189949 | 8_2:+59107995 | Msa1258010:CDS |
| CCATTCTTCTTGCGCGTGTT+AGG | 0.308971 | 8_2:-59108737 | None:intergenic |
| CATGTGCTTGCTTCACCATC+TGG | 0.323630 | 8_2:-59108800 | None:intergenic |
| TAAAACTGAACTGCTTCTAT+TGG | 0.326579 | 8_2:+59108688 | Msa1258010:CDS |
| AATATTAGTAACATGGCTAT+TGG | 0.329071 | 8_2:+59107517 | None:intergenic |
| CTCCTGACTCTAAGTCAAAA+GGG | 0.381899 | 8_2:+59108351 | Msa1258010:CDS |
| GACTTAGAGTCAGGAGTAGT+AGG | 0.391020 | 8_2:-59108344 | None:intergenic |
| TCTTCCAGGGTCTTCCTAGT+AGG | 0.396253 | 8_2:+59107853 | Msa1258010:intron |
| ACCATTGACTTGATAAATGA+TGG | 0.398569 | 8_2:-59107655 | None:intergenic |
| CCTAACACGCGCAAGAAGAA+TGG | 0.412184 | 8_2:+59108737 | Msa1258010:CDS |
| GAGTATGATGTTGTCTATAT+TGG | 0.436717 | 8_2:+59107939 | Msa1258010:CDS |
| ACTCCTGACTCTAAGTCAAA+AGG | 0.442221 | 8_2:+59108350 | Msa1258010:CDS |
| GTCTATATTGGCAGTAGAAG+TGG | 0.481140 | 8_2:+59107951 | Msa1258010:CDS |
| TCAACTTGTGCTTCACAAGT+TGG | 0.481970 | 8_2:-59108575 | None:intergenic |
| AACAACAAAGAACTCGTGCT+TGG | 0.497832 | 8_2:+59107590 | Msa1258010:CDS |
| TCCATCATTTATCAAGTCAA+TGG | 0.499589 | 8_2:+59107654 | Msa1258010:CDS |
| TGTTCCTCACAAAACCTACT+AGG | 0.504504 | 8_2:-59107867 | None:intergenic |
| AAGTCAATGGTCCGGTCTCA+TGG | 0.512045 | 8_2:+59107667 | Msa1258010:CDS |
| GCTACTACTCCTGATCCAAA+AGG | 0.514593 | 8_2:+59108449 | Msa1258010:CDS |
| ACAAAGAACTCGTGCTTGGA+AGG | 0.515051 | 8_2:+59107594 | Msa1258010:CDS |
| CTACTACTCCTGATCCAAAA+GGG | 0.521002 | 8_2:+59108450 | Msa1258010:CDS |
| CTAACACGCGCAAGAAGAAT+GGG | 0.523922 | 8_2:+59108738 | Msa1258010:CDS |
| GACTCTTTAGTTACGTTGCA+AGG | 0.524631 | 8_2:+59107539 | Msa1258010:CDS |
| AATTGAAATTGTTGAAGCAA+AGG | 0.524896 | 8_2:+59108481 | Msa1258010:CDS |
| GAAGTGGGCTAAGTGGTGGC+TGG | 0.540038 | 8_2:+59107967 | Msa1258010:CDS |
| GGGCTAAGTGGTGGCTGGAG+AGG | 0.544907 | 8_2:+59107972 | Msa1258010:CDS |
| CATTTATCAAGTCAATGGTC+CGG | 0.559658 | 8_2:+59107659 | Msa1258010:CDS |
| AACAGCTAAAACCATGAGAC+CGG | 0.566641 | 8_2:-59107678 | None:intergenic |
| TTTAGAGGATGAAAATGGCT+CGG | 0.571858 | 8_2:+59107917 | Msa1258010:CDS |
| TCGTGCTTGGAAGGCTGCAG+AGG | 0.573588 | 8_2:+59107603 | Msa1258010:CDS |
| TCTATATTGGCAGTAGAAGT+GGG | 0.573838 | 8_2:+59107952 | Msa1258010:CDS |
| AAGACAAGGAAGTCCAAAGA+AGG | 0.577361 | 8_2:+59108635 | Msa1258010:CDS |
| TTGGAACATAAATTGGATGA+TGG | 0.579994 | 8_2:+59108002 | Msa1258010:CDS |
| GGCAGTAGAAGTGGGCTAAG+TGG | 0.585137 | 8_2:+59107960 | Msa1258010:CDS |
| TTAATGAAAGTTAAGCCAGA+TGG | 0.605559 | 8_2:+59108785 | Msa1258010:CDS |
| TGGCTGGAGAGGATTTGCAT+TGG | 0.612968 | 8_2:+59107983 | Msa1258010:CDS |
| TCCTGACTCTAAGTCAAAAG+GGG | 0.616375 | 8_2:+59108352 | Msa1258010:CDS |
| TTAGAGTCAGGAGTAGTAGG+TGG | 0.638133 | 8_2:-59108341 | None:intergenic |
| TACTACTCCTGATCCAAAAG+GGG | 0.651841 | 8_2:+59108451 | Msa1258010:CDS |
| TAAAATTGTCAAACAAGACA+AGG | 0.658988 | 8_2:+59108621 | Msa1258010:CDS |
| AGTTGAAACTGTGAAACCAA+AGG | 0.667404 | 8_2:+59108592 | Msa1258010:CDS |
| AGTAGAAGTGGGCTAAGTGG+TGG | 0.694572 | 8_2:+59107963 | Msa1258010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GACAAATAAATATAATATTT+TGG | - | chr8_2:59107828-59107847 | None:intergenic | 10.0% |
| !!! | GACAAATAAATATAATATTT+TGG | - | chr8_2:59107828-59107847 | None:intergenic | 10.0% |
| !!! | GTTCAGAATATTTTTCTATA+TGG | + | chr8_2:59107719-59107738 | Msa1258010:intron | 20.0% |
| !! | TAAAAAGAATGTACAAAACA+TGG | - | chr8_2:59107760-59107779 | None:intergenic | 20.0% |
| !!! | GTTCAGAATATTTTTCTATA+TGG | + | chr8_2:59107719-59107738 | Msa1258010:intron | 20.0% |
| !! | TAAAAAGAATGTACAAAACA+TGG | - | chr8_2:59107760-59107779 | None:intergenic | 20.0% |
| ! | TTATTTGTCTTTATTCTTCC+AGG | + | chr8_2:59107839-59107858 | Msa1258010:intron | 25.0% |
| ! | TATTTGTCTTTATTCTTCCA+GGG | + | chr8_2:59107840-59107859 | Msa1258010:intron | 25.0% |
| !!! | ATGATTTTAGAGGATGAAAA+TGG | + | chr8_2:59107912-59107931 | Msa1258010:CDS | 25.0% |
| ! | ATTTGCATTGGAACATAAAT+TGG | + | chr8_2:59107995-59108014 | Msa1258010:CDS | 25.0% |
| !!! | TGATGCACTTGTTTTTTAAT+CGG | + | chr8_2:59108025-59108044 | Msa1258010:intron | 25.0% |
| !!! | GAAGATTTAGTTTTTCCATT+CGG | - | chr8_2:59108295-59108314 | None:intergenic | 25.0% |
| ! | AATTGAAATTGTTGAAGCAA+AGG | + | chr8_2:59108481-59108500 | Msa1258010:CDS | 25.0% |
| ! | TAAAATTGTCAAACAAGACA+AGG | + | chr8_2:59108621-59108640 | Msa1258010:CDS | 25.0% |
| ! | TTATTTGTCTTTATTCTTCC+AGG | + | chr8_2:59107839-59107858 | Msa1258010:intron | 25.0% |
| ! | TATTTGTCTTTATTCTTCCA+GGG | + | chr8_2:59107840-59107859 | Msa1258010:intron | 25.0% |
| !!! | ATGATTTTAGAGGATGAAAA+TGG | + | chr8_2:59107912-59107931 | Msa1258010:CDS | 25.0% |
| ! | ATTTGCATTGGAACATAAAT+TGG | + | chr8_2:59107995-59108014 | Msa1258010:CDS | 25.0% |
| !!! | TGATGCACTTGTTTTTTAAT+CGG | + | chr8_2:59108025-59108044 | Msa1258010:intron | 25.0% |
| !!! | GAAGATTTAGTTTTTCCATT+CGG | - | chr8_2:59108295-59108314 | None:intergenic | 25.0% |
| ! | AATTGAAATTGTTGAAGCAA+AGG | + | chr8_2:59108481-59108500 | Msa1258010:CDS | 25.0% |
| ! | TAAAATTGTCAAACAAGACA+AGG | + | chr8_2:59108621-59108640 | Msa1258010:CDS | 25.0% |
| !!! | GCTTTTTCGATTTCATCTAT+TGG | - | chr8_2:59107565-59107584 | None:intergenic | 30.0% |
| TCCATCATTTATCAAGTCAA+TGG | + | chr8_2:59107654-59107673 | Msa1258010:CDS | 30.0% | |
| !! | ACCATTGACTTGATAAATGA+TGG | - | chr8_2:59107658-59107677 | None:intergenic | 30.0% |
| ! | ATCATGTTATGCACTGTTTT+TGG | - | chr8_2:59107897-59107916 | None:intergenic | 30.0% |
| ! | AGTGCATAACATGATTTTAG+AGG | + | chr8_2:59107902-59107921 | Msa1258010:CDS | 30.0% |
| GAGTATGATGTTGTCTATAT+TGG | + | chr8_2:59107939-59107958 | Msa1258010:CDS | 30.0% | |
| TTGGAACATAAATTGGATGA+TGG | + | chr8_2:59108002-59108021 | Msa1258010:CDS | 30.0% | |
| !! | AAGCTTTGAAAGGACTAATT+TGG | - | chr8_2:59108129-59108148 | None:intergenic | 30.0% |
| GTTTCGCATAAATTGGAATA+AGG | - | chr8_2:59108196-59108215 | None:intergenic | 30.0% | |
| TTCCAATTTATGCGAAACTA+AGG | + | chr8_2:59108198-59108217 | Msa1258010:intron | 30.0% | |
| TTCCTTAGTTTCGCATAAAT+TGG | - | chr8_2:59108203-59108222 | None:intergenic | 30.0% | |
| ! | GTTTTCTTTATAGCTGTCTT+TGG | - | chr8_2:59108401-59108420 | None:intergenic | 30.0% |
| ACATTCATTCTTACCTTCTT+TGG | - | chr8_2:59108651-59108670 | None:intergenic | 30.0% | |
| TAAAACTGAACTGCTTCTAT+TGG | + | chr8_2:59108688-59108707 | Msa1258010:CDS | 30.0% | |
| TTAATGAAAGTTAAGCCAGA+TGG | + | chr8_2:59108785-59108804 | Msa1258010:CDS | 30.0% | |
| !!! | GCTTTTTCGATTTCATCTAT+TGG | - | chr8_2:59107565-59107584 | None:intergenic | 30.0% |
| TCCATCATTTATCAAGTCAA+TGG | + | chr8_2:59107654-59107673 | Msa1258010:CDS | 30.0% | |
| !! | ACCATTGACTTGATAAATGA+TGG | - | chr8_2:59107658-59107677 | None:intergenic | 30.0% |
| ! | ATCATGTTATGCACTGTTTT+TGG | - | chr8_2:59107897-59107916 | None:intergenic | 30.0% |
| ! | AGTGCATAACATGATTTTAG+AGG | + | chr8_2:59107902-59107921 | Msa1258010:CDS | 30.0% |
| GAGTATGATGTTGTCTATAT+TGG | + | chr8_2:59107939-59107958 | Msa1258010:CDS | 30.0% | |
| TTGGAACATAAATTGGATGA+TGG | + | chr8_2:59108002-59108021 | Msa1258010:CDS | 30.0% | |
| !! | AAGCTTTGAAAGGACTAATT+TGG | - | chr8_2:59108129-59108148 | None:intergenic | 30.0% |
| GTTTCGCATAAATTGGAATA+AGG | - | chr8_2:59108196-59108215 | None:intergenic | 30.0% | |
| TTCCAATTTATGCGAAACTA+AGG | + | chr8_2:59108198-59108217 | Msa1258010:intron | 30.0% | |
| TTCCTTAGTTTCGCATAAAT+TGG | - | chr8_2:59108203-59108222 | None:intergenic | 30.0% | |
| ! | GTTTTCTTTATAGCTGTCTT+TGG | - | chr8_2:59108401-59108420 | None:intergenic | 30.0% |
| ACATTCATTCTTACCTTCTT+TGG | - | chr8_2:59108651-59108670 | None:intergenic | 30.0% | |
| TAAAACTGAACTGCTTCTAT+TGG | + | chr8_2:59108688-59108707 | Msa1258010:CDS | 30.0% | |
| TTAATGAAAGTTAAGCCAGA+TGG | + | chr8_2:59108785-59108804 | Msa1258010:CDS | 30.0% | |
| CATTTATCAAGTCAATGGTC+CGG | + | chr8_2:59107659-59107678 | Msa1258010:CDS | 35.0% | |
| !!! | CTCATGGTTTTAGCTGTTTT+TGG | + | chr8_2:59107683-59107702 | Msa1258010:CDS | 35.0% |
| !!! | TGGTTTTAGCTGTTTTTGGT+TGG | + | chr8_2:59107687-59107706 | Msa1258010:CDS | 35.0% |
| AAACATGGATAAGAATGTGC+AGG | - | chr8_2:59107745-59107764 | None:intergenic | 35.0% | |
| TTTAGAGGATGAAAATGGCT+CGG | + | chr8_2:59107917-59107936 | Msa1258010:CDS | 35.0% | |
| TCTATATTGGCAGTAGAAGT+GGG | + | chr8_2:59107952-59107971 | Msa1258010:CDS | 35.0% | |
| TATGAAGAAAGTCTGCTAGA+AGG | + | chr8_2:59108232-59108251 | Msa1258010:intron | 35.0% | |
| ACAAAGAATTCAAACCACAG+AGG | + | chr8_2:59108263-59108282 | Msa1258010:intron | 35.0% | |
| CAAAGAATTCAAACCACAGA+GGG | + | chr8_2:59108264-59108283 | Msa1258010:intron | 35.0% | |
| !! | TCAATTTGTTCTTCCCCTTT+TGG | - | chr8_2:59108467-59108486 | None:intergenic | 35.0% |
| AGTTGAAACTGTGAAACCAA+AGG | + | chr8_2:59108592-59108611 | Msa1258010:CDS | 35.0% | |
| ! | GACAATTTTATAGCTGCCTT+TGG | - | chr8_2:59108611-59108630 | None:intergenic | 35.0% |
| !!! | TTATGCGCTGATTTTTTTCG+AGG | - | chr8_2:59108839-59108858 | None:intergenic | 35.0% |
| CATTTATCAAGTCAATGGTC+CGG | + | chr8_2:59107659-59107678 | Msa1258010:CDS | 35.0% | |
| !!! | CTCATGGTTTTAGCTGTTTT+TGG | + | chr8_2:59107683-59107702 | Msa1258010:CDS | 35.0% |
| !!! | TGGTTTTAGCTGTTTTTGGT+TGG | + | chr8_2:59107687-59107706 | Msa1258010:CDS | 35.0% |
| AAACATGGATAAGAATGTGC+AGG | - | chr8_2:59107745-59107764 | None:intergenic | 35.0% | |
| TTTAGAGGATGAAAATGGCT+CGG | + | chr8_2:59107917-59107936 | Msa1258010:CDS | 35.0% | |
| TCTATATTGGCAGTAGAAGT+GGG | + | chr8_2:59107952-59107971 | Msa1258010:CDS | 35.0% | |
| TATGAAGAAAGTCTGCTAGA+AGG | + | chr8_2:59108232-59108251 | Msa1258010:intron | 35.0% | |
| ACAAAGAATTCAAACCACAG+AGG | + | chr8_2:59108263-59108282 | Msa1258010:intron | 35.0% | |
| CAAAGAATTCAAACCACAGA+GGG | + | chr8_2:59108264-59108283 | Msa1258010:intron | 35.0% | |
| !! | TCAATTTGTTCTTCCCCTTT+TGG | - | chr8_2:59108467-59108486 | None:intergenic | 35.0% |
| AGTTGAAACTGTGAAACCAA+AGG | + | chr8_2:59108592-59108611 | Msa1258010:CDS | 35.0% | |
| ! | GACAATTTTATAGCTGCCTT+TGG | - | chr8_2:59108611-59108630 | None:intergenic | 35.0% |
| !!! | TTATGCGCTGATTTTTTTCG+AGG | - | chr8_2:59108839-59108858 | None:intergenic | 35.0% |
| GACTCTTTAGTTACGTTGCA+AGG | + | chr8_2:59107539-59107558 | Msa1258010:CDS | 40.0% | |
| AACAACAAAGAACTCGTGCT+TGG | + | chr8_2:59107590-59107609 | Msa1258010:CDS | 40.0% | |
| AACAGCTAAAACCATGAGAC+CGG | - | chr8_2:59107681-59107700 | None:intergenic | 40.0% | |
| !! | TCTTCCTAGTAGGTTTTGTG+AGG | + | chr8_2:59107863-59107882 | Msa1258010:CDS | 40.0% |
| TGTTCCTCACAAAACCTACT+AGG | - | chr8_2:59107870-59107889 | None:intergenic | 40.0% | |
| GTCTATATTGGCAGTAGAAG+TGG | + | chr8_2:59107951-59107970 | Msa1258010:CDS | 40.0% | |
| ! | CAACTCTCGTTTAACTTCGA+AGG | + | chr8_2:59108093-59108112 | Msa1258010:intron | 40.0% |
| !! | AGGAACGCTTAAGCTTTGAA+AGG | - | chr8_2:59108139-59108158 | None:intergenic | 40.0% |
| AAAAGCTAGCTCAAGAGGTA+AGG | - | chr8_2:59108159-59108178 | None:intergenic | 40.0% | |
| !!! | TTACCTCTTGAGCTAGCTTT+TGG | + | chr8_2:59108158-59108177 | Msa1258010:intron | 40.0% |
| ACTCCTGACTCTAAGTCAAA+AGG | + | chr8_2:59108350-59108369 | Msa1258010:CDS | 40.0% | |
| CTCCTGACTCTAAGTCAAAA+GGG | + | chr8_2:59108351-59108370 | Msa1258010:CDS | 40.0% | |
| TCCTGACTCTAAGTCAAAAG+GGG | + | chr8_2:59108352-59108371 | Msa1258010:CDS | 40.0% | |
| CTACTACTCCTGATCCAAAA+GGG | + | chr8_2:59108450-59108469 | Msa1258010:CDS | 40.0% | |
| TACTACTCCTGATCCAAAAG+GGG | + | chr8_2:59108451-59108470 | Msa1258010:CDS | 40.0% | |
| TCAACTTGTGCTTCACAAGT+TGG | - | chr8_2:59108578-59108597 | None:intergenic | 40.0% | |
| AAGACAAGGAAGTCCAAAGA+AGG | + | chr8_2:59108635-59108654 | Msa1258010:CDS | 40.0% | |
| GACTCTTTAGTTACGTTGCA+AGG | + | chr8_2:59107539-59107558 | Msa1258010:CDS | 40.0% | |
| AACAACAAAGAACTCGTGCT+TGG | + | chr8_2:59107590-59107609 | Msa1258010:CDS | 40.0% | |
| AACAGCTAAAACCATGAGAC+CGG | - | chr8_2:59107681-59107700 | None:intergenic | 40.0% | |
| !! | TCTTCCTAGTAGGTTTTGTG+AGG | + | chr8_2:59107863-59107882 | Msa1258010:CDS | 40.0% |
| TGTTCCTCACAAAACCTACT+AGG | - | chr8_2:59107870-59107889 | None:intergenic | 40.0% | |
| GTCTATATTGGCAGTAGAAG+TGG | + | chr8_2:59107951-59107970 | Msa1258010:CDS | 40.0% | |
| ! | CAACTCTCGTTTAACTTCGA+AGG | + | chr8_2:59108093-59108112 | Msa1258010:intron | 40.0% |
| !! | AGGAACGCTTAAGCTTTGAA+AGG | - | chr8_2:59108139-59108158 | None:intergenic | 40.0% |
| AAAAGCTAGCTCAAGAGGTA+AGG | - | chr8_2:59108159-59108178 | None:intergenic | 40.0% | |
| !!! | TTACCTCTTGAGCTAGCTTT+TGG | + | chr8_2:59108158-59108177 | Msa1258010:intron | 40.0% |
| ACTCCTGACTCTAAGTCAAA+AGG | + | chr8_2:59108350-59108369 | Msa1258010:CDS | 40.0% | |
| CTCCTGACTCTAAGTCAAAA+GGG | + | chr8_2:59108351-59108370 | Msa1258010:CDS | 40.0% | |
| TCCTGACTCTAAGTCAAAAG+GGG | + | chr8_2:59108352-59108371 | Msa1258010:CDS | 40.0% | |
| CTACTACTCCTGATCCAAAA+GGG | + | chr8_2:59108450-59108469 | Msa1258010:CDS | 40.0% | |
| TACTACTCCTGATCCAAAAG+GGG | + | chr8_2:59108451-59108470 | Msa1258010:CDS | 40.0% | |
| TCAACTTGTGCTTCACAAGT+TGG | - | chr8_2:59108578-59108597 | None:intergenic | 40.0% | |
| AAGACAAGGAAGTCCAAAGA+AGG | + | chr8_2:59108635-59108654 | Msa1258010:CDS | 40.0% | |
| ACAAAGAACTCGTGCTTGGA+AGG | + | chr8_2:59107594-59107613 | Msa1258010:CDS | 45.0% | |
| AAAACCTACTAGGAAGACCC+TGG | - | chr8_2:59107860-59107879 | None:intergenic | 45.0% | |
| GGTTGAAGCGACGAGATTTA+AGG | + | chr8_2:59108046-59108065 | Msa1258010:intron | 45.0% | |
| TTAGAGTCAGGAGTAGTAGG+TGG | - | chr8_2:59108344-59108363 | None:intergenic | 45.0% | |
| GACTTAGAGTCAGGAGTAGT+AGG | - | chr8_2:59108347-59108366 | None:intergenic | 45.0% | |
| !!! | TCCCCTTTTGACTTAGAGTC+AGG | - | chr8_2:59108356-59108375 | None:intergenic | 45.0% |
| GCTACTACTCCTGATCCAAA+AGG | + | chr8_2:59108449-59108468 | Msa1258010:CDS | 45.0% | |
| ! | TGTTCTTCCCCTTTTGGATC+AGG | - | chr8_2:59108461-59108480 | None:intergenic | 45.0% |
| CTAACACGCGCAAGAAGAAT+GGG | + | chr8_2:59108738-59108757 | Msa1258010:CDS | 45.0% | |
| ACAAAGAACTCGTGCTTGGA+AGG | + | chr8_2:59107594-59107613 | Msa1258010:CDS | 45.0% | |
| AAAACCTACTAGGAAGACCC+TGG | - | chr8_2:59107860-59107879 | None:intergenic | 45.0% | |
| GGTTGAAGCGACGAGATTTA+AGG | + | chr8_2:59108046-59108065 | Msa1258010:intron | 45.0% | |
| TTAGAGTCAGGAGTAGTAGG+TGG | - | chr8_2:59108344-59108363 | None:intergenic | 45.0% | |
| GACTTAGAGTCAGGAGTAGT+AGG | - | chr8_2:59108347-59108366 | None:intergenic | 45.0% | |
| !!! | TCCCCTTTTGACTTAGAGTC+AGG | - | chr8_2:59108356-59108375 | None:intergenic | 45.0% |
| GCTACTACTCCTGATCCAAA+AGG | + | chr8_2:59108449-59108468 | Msa1258010:CDS | 45.0% | |
| ! | TGTTCTTCCCCTTTTGGATC+AGG | - | chr8_2:59108461-59108480 | None:intergenic | 45.0% |
| CTAACACGCGCAAGAAGAAT+GGG | + | chr8_2:59108738-59108757 | Msa1258010:CDS | 45.0% | |
| AAGTCAATGGTCCGGTCTCA+TGG | + | chr8_2:59107667-59107686 | Msa1258010:CDS | 50.0% | |
| TCTTCCAGGGTCTTCCTAGT+AGG | + | chr8_2:59107853-59107872 | Msa1258010:intron | 50.0% | |
| !! | AGTAGAAGTGGGCTAAGTGG+TGG | + | chr8_2:59107963-59107982 | Msa1258010:CDS | 50.0% |
| TGGCTGGAGAGGATTTGCAT+TGG | + | chr8_2:59107983-59108002 | Msa1258010:CDS | 50.0% | |
| ACGCCAAAAGCTAGCTCAAG+AGG | - | chr8_2:59108164-59108183 | None:intergenic | 50.0% | |
| ! | CCATTCGGATTTTCCCTCTG+TGG | - | chr8_2:59108280-59108299 | None:intergenic | 50.0% |
| CCACAGAGGGAAAATCCGAA+TGG | + | chr8_2:59108277-59108296 | Msa1258010:intron | 50.0% | |
| CCATTCTTCTTGCGCGTGTT+AGG | - | chr8_2:59108740-59108759 | None:intergenic | 50.0% | |
| CCTAACACGCGCAAGAAGAA+TGG | + | chr8_2:59108737-59108756 | Msa1258010:CDS | 50.0% | |
| CATGTGCTTGCTTCACCATC+TGG | - | chr8_2:59108803-59108822 | None:intergenic | 50.0% | |
| AAGTCAATGGTCCGGTCTCA+TGG | + | chr8_2:59107667-59107686 | Msa1258010:CDS | 50.0% | |
| TCTTCCAGGGTCTTCCTAGT+AGG | + | chr8_2:59107853-59107872 | Msa1258010:intron | 50.0% | |
| !! | AGTAGAAGTGGGCTAAGTGG+TGG | + | chr8_2:59107963-59107982 | Msa1258010:CDS | 50.0% |
| TGGCTGGAGAGGATTTGCAT+TGG | + | chr8_2:59107983-59108002 | Msa1258010:CDS | 50.0% | |
| ACGCCAAAAGCTAGCTCAAG+AGG | - | chr8_2:59108164-59108183 | None:intergenic | 50.0% | |
| ! | CCATTCGGATTTTCCCTCTG+TGG | - | chr8_2:59108280-59108299 | None:intergenic | 50.0% |
| CCACAGAGGGAAAATCCGAA+TGG | + | chr8_2:59108277-59108296 | Msa1258010:intron | 50.0% | |
| CCATTCTTCTTGCGCGTGTT+AGG | - | chr8_2:59108740-59108759 | None:intergenic | 50.0% | |
| CCTAACACGCGCAAGAAGAA+TGG | + | chr8_2:59108737-59108756 | Msa1258010:CDS | 50.0% | |
| CATGTGCTTGCTTCACCATC+TGG | - | chr8_2:59108803-59108822 | None:intergenic | 50.0% | |
| !! | GGCAGTAGAAGTGGGCTAAG+TGG | + | chr8_2:59107960-59107979 | Msa1258010:CDS | 55.0% |
| !! | GGCAGTAGAAGTGGGCTAAG+TGG | + | chr8_2:59107960-59107979 | Msa1258010:CDS | 55.0% |
| TCGTGCTTGGAAGGCTGCAG+AGG | + | chr8_2:59107603-59107622 | Msa1258010:CDS | 60.0% | |
| !! | GAAGTGGGCTAAGTGGTGGC+TGG | + | chr8_2:59107967-59107986 | Msa1258010:CDS | 60.0% |
| TCGTGCTTGGAAGGCTGCAG+AGG | + | chr8_2:59107603-59107622 | Msa1258010:CDS | 60.0% | |
| !! | GAAGTGGGCTAAGTGGTGGC+TGG | + | chr8_2:59107967-59107986 | Msa1258010:CDS | 60.0% |
| GGGCTAAGTGGTGGCTGGAG+AGG | + | chr8_2:59107972-59107991 | Msa1258010:CDS | 65.0% | |
| GGGCTAAGTGGTGGCTGGAG+AGG | + | chr8_2:59107972-59107991 | Msa1258010:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 59107529 | 59108880 | 59107529 | ID=Msa1258010;Name=Msa1258010 |
| chr8_2 | mRNA | 59107529 | 59108880 | 59107529 | ID=Msa1258010-mRNA-1;Parent=Msa1258010;Name=Msa1258010-mRNA-1;_AED=0.08;_eAED=0.11;_QI=0|0|0|1|0.5|0.33|3|0|296 |
| chr8_2 | exon | 59107529 | 59107708 | 59107529 | ID=Msa1258010-mRNA-1:exon:18323;Parent=Msa1258010-mRNA-1 |
| chr8_2 | exon | 59107861 | 59108023 | 59107861 | ID=Msa1258010-mRNA-1:exon:18324;Parent=Msa1258010-mRNA-1 |
| chr8_2 | exon | 59108333 | 59108880 | 59108333 | ID=Msa1258010-mRNA-1:exon:18325;Parent=Msa1258010-mRNA-1 |
| chr8_2 | CDS | 59107529 | 59107708 | 59107529 | ID=Msa1258010-mRNA-1:cds;Parent=Msa1258010-mRNA-1 |
| chr8_2 | CDS | 59107861 | 59108023 | 59107861 | ID=Msa1258010-mRNA-1:cds;Parent=Msa1258010-mRNA-1 |
| chr8_2 | CDS | 59108333 | 59108880 | 59108333 | ID=Msa1258010-mRNA-1:cds;Parent=Msa1258010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
