AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1259440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1259440 MtrunA17_Chr4g0059631 78.157 293 26 2 289 581 1 255 3.81e-160 457
Msa1259440 MtrunA17_Chr4g0059631 77.273 286 27 2 4 289 1 248 6.47e-153 439
Msa1259440 MtrunA17_Chr4g0022641 54.209 297 105 5 289 581 1 270 5.55e-95 296
Msa1259440 MtrunA17_Chr4g0022641 53.448 290 104 5 4 289 1 263 7.40e-89 280
Msa1259440 MtrunA17_Chr1g0212471 62.987 154 55 1 4 155 1 154 1.33e-59 196
Msa1259440 MtrunA17_Chr1g0212471 62.338 154 56 1 289 440 1 154 1.40e-58 194
Msa1259440 MtrunA17_Chr2g0303981 50.617 162 77 3 6 165 5 165 5.91e-45 157
Msa1259440 MtrunA17_Chr2g0303981 50.000 162 78 3 291 450 5 165 2.32e-44 156
Msa1259440 MtrunA17_Chr6g0457851 39.744 156 91 1 3 155 10 165 2.29e-34 133
Msa1259440 MtrunA17_Chr6g0457851 38.217 157 94 1 287 440 9 165 4.97e-34 132
Msa1259440 MtrunA17_Chr1g0212151 42.581 155 86 1 4 155 1 155 6.41e-34 132
Msa1259440 MtrunA17_Chr1g0212151 42.581 155 86 1 289 440 1 155 7.65e-34 132
Msa1259440 MtrunA17_Chr6g0449851 39.744 156 91 1 289 441 1 156 1.17e-32 127
Msa1259440 MtrunA17_Chr6g0449851 38.462 156 93 1 4 156 1 156 4.48e-32 126
Msa1259440 MtrunA17_Chr6g0449861 34.146 205 122 4 279 474 3 203 1.33e-28 117
Msa1259440 MtrunA17_Chr6g0449861 34.184 196 120 3 3 189 8 203 4.32e-28 115
Msa1259440 MtrunA17_Chr3g0107381 32.353 136 86 4 289 423 1 131 2.52e-14 72.4
Msa1259440 MtrunA17_Chr3g0107381 31.618 136 87 4 4 138 1 131 7.64e-14 71.2
Msa1259440 MtrunA17_Chr2g0283941 27.742 155 101 3 5 151 3 154 5.97e-14 72.0
Msa1259440 MtrunA17_Chr2g0283941 27.097 155 102 3 290 436 3 154 3.42e-13 69.7
Msa1259440 MtrunA17_Chr5g0432691 33.019 106 67 3 4 108 1 103 1.47e-11 63.2
Msa1259440 MtrunA17_Chr5g0432691 32.075 106 68 3 289 393 1 103 5.22e-11 61.6
Msa1259440 MtrunA17_Chr3g0107461 31.092 119 74 4 289 402 1 116 9.82e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1259440 AT5G55690.1 33.113 151 90 3 4 150 1 144 1.91e-15 77.4
Msa1259440 AT5G55690.1 32.450 151 91 3 289 435 1 144 6.38e-15 75.9
Msa1259440 AT5G55690.2 33.113 151 90 3 4 150 1 144 1.91e-15 77.4
Msa1259440 AT5G55690.2 32.450 151 91 3 289 435 1 144 6.38e-15 75.9

Find 99 sgRNAs with CRISPR-Local

Find 391 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTACACTTGTAAGGTCTTC+TGG 0.270047 8_2:-61082020 None:intergenic
TTTACACTTGTAAGGTCTTC+TGG 0.270047 8_2:-61088129 None:intergenic
TCCTGAGATATTTGATGTTA+AGG 0.348371 8_2:+61082085 Msa1259440:CDS
TCCTGAGATATTTGATGTTA+AGG 0.348371 8_2:+61088194 Msa1259440:CDS
GCACTTTGGATGTATTTCAT+AGG 0.357011 8_2:-61087967 None:intergenic
AGCCCACTAAGTTGGTTTGA+TGG 0.416723 8_2:-61082380 None:intergenic
AGCCCACTAAGTTGGTTTGA+TGG 0.416723 8_2:-61088489 None:intergenic
ACCATCTCACTTGTATAATC+AGG 0.418843 8_2:-61082431 None:intergenic
ACCATCTCACTTGTATAATC+AGG 0.418843 8_2:-61088540 None:intergenic
GATCAACAAGTTGACTAAGT+TGG 0.422061 8_2:-61082610 None:intergenic
GATCAACAAGTTGACTAAGT+TGG 0.422061 8_2:-61088719 None:intergenic
ACAATCTCACTCATATAATC+AGG 0.433010 8_2:-61082542 None:intergenic
ACAATCTCACTCATATAATC+AGG 0.433010 8_2:-61088651 None:intergenic
GCAAGGAGTTTACACTTGTA+AGG 0.440354 8_2:-61082028 None:intergenic
GCAAGGAGTTTACACTTGTA+AGG 0.440354 8_2:-61088137 None:intergenic
TGGTTTGATGATGAACTAGA+AGG 0.448565 8_2:-61082479 None:intergenic
AGTTGGTTTGCTGATGAACT+TGG 0.448642 8_2:-61082593 None:intergenic
AGTTGGTTTGCTGATGAACT+TGG 0.448642 8_2:-61088702 None:intergenic
AGTTGGTTTGATGGTGAACT+AGG 0.459766 8_2:-61082371 None:intergenic
AGTTGGTTTGATGGTGAACT+AGG 0.459766 8_2:-61088480 None:intergenic
TTGTGCTGGGATTGTCAACC+TGG 0.478151 8_2:+61088777 Msa1259440:CDS
CTAAAATGTGGATGCCAAGT+TGG 0.479466 8_2:-61082185 None:intergenic
CTAAAATGTGGATGCCAAGT+TGG 0.479466 8_2:-61088294 None:intergenic
TAAAATGTGGATGCCAAGTT+GGG 0.491000 8_2:-61082184 None:intergenic
TAAAATGTGGATGCCAAGTT+GGG 0.491000 8_2:-61088293 None:intergenic
GCTTGCTTTATTGTGTATGA+TGG 0.491871 8_2:+61081966 Msa1259440:CDS
GCTTGCTTTATTGTGTATGA+TGG 0.491871 8_2:+61088075 Msa1259440:CDS
TCATCATCAAACCAACTTAG+TGG 0.501564 8_2:+61082488 Msa1259440:CDS
TCATCATCAAACCAACTTAG+TGG 0.501564 8_2:+61088597 Msa1259440:CDS
TCCTTAACATCAAATATCTC+AGG 0.501707 8_2:-61082086 None:intergenic
TCCTTAACATCAAATATCTC+AGG 0.501707 8_2:-61088195 None:intergenic
TCTCCACAAGCCCACTAAGT+TGG 0.502348 8_2:-61082388 None:intergenic
TCTCCACAAGCCCACTAAGT+TGG 0.502348 8_2:-61088497 None:intergenic
CTTTGAAAATAAGATAGAAA+AGG 0.507369 8_2:+61082112 Msa1259440:CDS
CTTTGAAAATAAGATAGAAA+AGG 0.507369 8_2:+61088221 Msa1259440:CDS
TCTCCACAAGCCCACTAAGT+TGG 0.508925 8_2:-61082499 None:intergenic
TCTCCACAAGCCCACTAAGT+TGG 0.508925 8_2:-61088608 None:intergenic
TTGTAAGAAGTCTGGAGCAA+AGG 0.512867 8_2:+61081944 Msa1259440:CDS
TTGTAAGAAGTCTGGAGCAA+AGG 0.512867 8_2:+61088053 Msa1259440:CDS
AACTTGTTGATCTTGATGAC+TGG 0.515181 8_2:+61082621 Msa1259440:CDS
AACTTGTTGATCTTGATGAC+TGG 0.515181 8_2:+61088730 Msa1259440:CDS
AGGTCTTCTGGCCATGTCGT+TGG 0.516955 8_2:-61082008 None:intergenic
TCACCATCAAACCAACTTAG+TGG 0.519319 8_2:+61082377 Msa1259440:CDS
TCACCATCAAACCAACTTAG+TGG 0.519319 8_2:+61088486 Msa1259440:CDS
ATTGTGGATTTCACTAGTCT+TGG 0.527589 8_2:+61082560 Msa1259440:CDS
ATTGTGGATTTCACTAGTCT+TGG 0.527589 8_2:+61088669 Msa1259440:CDS
AGTTGGTTTGATGATGAACT+AGG 0.530891 8_2:-61088591 None:intergenic
TATAATCAGGATTAACAACT+TGG 0.538229 8_2:-61082529 None:intergenic
TATAATCAGGATTAACAACT+TGG 0.538229 8_2:-61088638 None:intergenic
AGAAGGCAAATCACCAAGAC+TGG 0.548262 8_2:-61082462 None:intergenic
AAACCAACTTAGTGGGCTTG+TGG 0.552156 8_2:+61082385 Msa1259440:CDS
AAACCAACTTAGTGGGCTTG+TGG 0.552156 8_2:+61082496 Msa1259440:CDS
AAACCAACTTAGTGGGCTTG+TGG 0.552156 8_2:+61088494 Msa1259440:CDS
AAACCAACTTAGTGGGCTTG+TGG 0.552156 8_2:+61088605 Msa1259440:CDS
CATCATCAAACCAACTTAGT+GGG 0.554520 8_2:+61082489 Msa1259440:CDS
CATCATCAAACCAACTTAGT+GGG 0.554520 8_2:+61088598 Msa1259440:CDS
AGGAGGCAAATCACCAAGAC+TGG 0.555082 8_2:-61088571 None:intergenic
ACTTTCAAACAGAGAAAGCA+TGG 0.556747 8_2:+61088006 Msa1259440:CDS
AGGTCTTCTGGCCATGTCGT+AGG 0.557005 8_2:-61088117 None:intergenic
ATGGTGGATTTCACCAGTCT+TGG 0.561657 8_2:+61082449 Msa1259440:CDS
ATGGTGGATTTCACCAGTCT+TGG 0.561657 8_2:+61088558 Msa1259440:CDS
TGATTATATGAGTGAGATTG+TGG 0.565961 8_2:+61082544 Msa1259440:CDS
TGATTATATGAGTGAGATTG+TGG 0.565961 8_2:+61088653 Msa1259440:CDS
ACTTTCAAACAGAGAAAGCA+TGG 0.566683 8_2:+61081897 Msa1259440:CDS
TCATCCAAGTTACTAAAATG+TGG 0.567439 8_2:-61082197 None:intergenic
TCATCCAAGTTACTAAAATG+TGG 0.567439 8_2:-61088306 None:intergenic
TGGTTTGCTGATGAACTTGG+AGG 0.570787 8_2:-61082590 None:intergenic
TGGTTTGCTGATGAACTTGG+AGG 0.570787 8_2:-61088699 None:intergenic
TCACTAAGATCTACCCAACT+TGG 0.574367 8_2:+61082171 Msa1259440:CDS
TCACTAAGATCTACCCAACT+TGG 0.574367 8_2:+61088280 Msa1259440:CDS
TATAATCAGGATCAACAACT+TGG 0.576059 8_2:-61082418 None:intergenic
TATAATCAGGATCAACAACT+TGG 0.576059 8_2:-61088527 None:intergenic
CACCATCAAACCAACTTAGT+GGG 0.576425 8_2:+61082378 Msa1259440:CDS
CACCATCAAACCAACTTAGT+GGG 0.576425 8_2:+61088487 Msa1259440:CDS
AGTGGGCTTGTGGAGAGGAA+TGG 0.577682 8_2:+61082395 Msa1259440:CDS
AGTGGGCTTGTGGAGAGGAA+TGG 0.577682 8_2:+61088504 Msa1259440:CDS
ATTCTGATACTCTTGAAGCA+AGG 0.580425 8_2:-61082045 None:intergenic
ATTCTGATACTCTTGAAGCA+AGG 0.580425 8_2:-61088154 None:intergenic
AACTTAGTGGGCTTGTGGAG+AGG 0.584533 8_2:+61082390 Msa1259440:CDS
AACTTAGTGGGCTTGTGGAG+AGG 0.584533 8_2:+61088499 Msa1259440:CDS
TGATTATACAAGTGAGATGG+TGG 0.591946 8_2:+61082433 Msa1259440:CDS
TGATTATACAAGTGAGATGG+TGG 0.591946 8_2:+61088542 Msa1259440:CDS
ACAAATAGAAACTAGCACCT+TGG 0.593239 8_2:+61082304 Msa1259440:CDS
ACAAATAGAAACTAGCACCT+TGG 0.593239 8_2:+61088413 Msa1259440:CDS
TGGTTTGATGGTGAACTAGG+AGG 0.598871 8_2:-61082368 None:intergenic
TGGTTTGATGGTGAACTAGG+AGG 0.598871 8_2:-61088477 None:intergenic
AATCATGTCACATATATCCA+AGG 0.609547 8_2:-61082321 None:intergenic
AATCATGTCACATATATCCA+AGG 0.609547 8_2:-61088430 None:intergenic
TGGATAAATCAATTAGATGA+TGG 0.616770 8_2:+61082641 Msa1259440:CDS
TGGATAAATCAATTAGATGA+TGG 0.616770 8_2:+61088750 Msa1259440:CDS
AAACAAAGATTAAGAAAGTG+CGG 0.626571 8_2:+61082138 Msa1259440:CDS
AAACAAAGATTAAGAAAGTG+CGG 0.626571 8_2:+61088247 Msa1259440:CDS
ATAATGTTGAACCAACGACA+TGG 0.647240 8_2:+61081997 Msa1259440:CDS
TGGTTTGATGATGAACTAGG+AGG 0.662339 8_2:-61088588 None:intergenic
TCCTGATTATACAAGTGAGA+TGG 0.678910 8_2:+61082430 Msa1259440:CDS
TCCTGATTATACAAGTGAGA+TGG 0.678910 8_2:+61088539 Msa1259440:CDS
ATAATATTGAACCTACGACA+TGG 0.717032 8_2:+61088106 Msa1259440:CDS
AAGTTGGGTAGATCTTAGTG+AGG 0.717752 8_2:-61082169 None:intergenic
AAGTTGGGTAGATCTTAGTG+AGG 0.717752 8_2:-61088278 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATAATATACAACTTAAA+AGG - chr8_2:61086697-61086716 None:intergenic 10.0%
!! AAAGAATTATAATATAATAC+TGG - chr8_2:61087781-61087800 None:intergenic 10.0%
!!! ATATTATAATTCTTTTACAT+TGG + chr8_2:61087786-61087805 Msa1259440:intron 10.0%
!!! TTTTCTTTAAATTTGTAGAA+TGG + chr8_2:61081821-61081840 Msa1259440:intron 15.0%
!! TTTCTTTAAATTTGTAGAAT+GGG + chr8_2:61081822-61081841 Msa1259440:intron 15.0%
!!! AATTATTTTTATGTAAGATG+AGG - chr8_2:61083140-61083159 None:intergenic 15.0%
!!! ATCTTCCATTTAATTTTTTT+GGG - chr8_2:61083595-61083614 None:intergenic 15.0%
!!! TATCTTCCATTTAATTTTTT+TGG - chr8_2:61083596-61083615 None:intergenic 15.0%
!!! AAATAATTGACTATGATTTT+TGG + chr8_2:61083836-61083855 Msa1259440:intron 15.0%
!!! AATAATTGACTATGATTTTT+GGG + chr8_2:61083837-61083856 Msa1259440:intron 15.0%
!! AAATATTGAAATGAACTATA+CGG - chr8_2:61084634-61084653 None:intergenic 15.0%
!!! CACTAATAGTTTTTTTTTTA+AGG + chr8_2:61084730-61084749 Msa1259440:intron 15.0%
!!! AAATCTTTTATTGAACTATT+AGG - chr8_2:61084788-61084807 None:intergenic 15.0%
!!! AAGATTTAATTTTGGTAAAA+AGG - chr8_2:61084831-61084850 None:intergenic 15.0%
!! AAAAAAAGTTTCAAATAAAG+TGG - chr8_2:61084945-61084964 None:intergenic 15.0%
!!! GATGTATTTTTTTTTTTAGA+GGG - chr8_2:61085280-61085299 None:intergenic 15.0%
!!! TATCTTCCATTTAATTTTTT+AGG - chr8_2:61083596-61083615 None:intergenic 15.0%
!! ATTTCATAATTCAAACAAAA+TGG + chr8_2:61086816-61086835 Msa1259440:intron 15.0%
!!! TTGGATTTAAAATATTGTAA+TGG - chr8_2:61086888-61086907 None:intergenic 15.0%
!! ATTCCTTAAAAAAAACTATT+CGG - chr8_2:61086946-61086965 None:intergenic 15.0%
!! TAAATAAATAGAATGACATA+TGG - chr8_2:61087521-61087540 None:intergenic 15.0%
!!! AAGAATATAAGAAATTTTAG+AGG - chr8_2:61087640-61087659 None:intergenic 15.0%
!!! TTTTCTTTAAATTTGTAGAA+TGG + chr8_2:61081821-61081840 Msa1259440:intron 15.0%
!! TTTCTTTAAATTTGTAGAAT+GGG + chr8_2:61081822-61081841 Msa1259440:intron 15.0%
!!! CTTTGAAAATAAGATAGAAA+AGG + chr8_2:61082112-61082131 Msa1259440:CDS 20.0%
!!! AGAAGTGTTTTCAATATTTT+CGG - chr8_2:61083304-61083323 None:intergenic 20.0%
!!! TTCTACATTTTTATTGTTTC+TGG + chr8_2:61083324-61083343 Msa1259440:intron 20.0%
!! TCAATCCCAAAAAAATTAAA+TGG + chr8_2:61083587-61083606 Msa1259440:intron 20.0%
!!! ATACGTGAGATTTTTTAATA+TGG + chr8_2:61083715-61083734 Msa1259440:intron 20.0%
!!! ATTTTTCAGTCATTTTAGTT+AGG + chr8_2:61083788-61083807 Msa1259440:intron 20.0%
!! TAAATAAGAATTCCAATAAG+GGG - chr8_2:61084366-61084385 None:intergenic 20.0%
!! GTAAATAAGAATTCCAATAA+GGG - chr8_2:61084367-61084386 None:intergenic 20.0%
!!! TTTTTTATAGAGTAGCTATT+AGG - chr8_2:61084762-61084781 None:intergenic 20.0%
!!! GACATGTTTTTTATTATTGA+CGG - chr8_2:61084923-61084942 None:intergenic 20.0%
!! TATTTATAGATTAGGATTGT+GGG - chr8_2:61085254-61085273 None:intergenic 20.0%
!!! GGATGTATTTTTTTTTTTAG+AGG - chr8_2:61085281-61085300 None:intergenic 20.0%
!!! TAAAACAATCACAAGTTTTA+GGG + chr8_2:61085582-61085601 Msa1259440:intron 20.0%
!!! TAATATTTTCGCAAAGTAAA+TGG + chr8_2:61085621-61085640 Msa1259440:intron 20.0%
!!! TATCTTTTTGTGGTTTTATA+AGG - chr8_2:61085725-61085744 None:intergenic 20.0%
!! CTCAATCCTAAAAAATTAAA+TGG + chr8_2:61085780-61085799 Msa1259440:intron 20.0%
!!! GGAAGATATTTACAATTTTT+CGG + chr8_2:61083608-61083627 Msa1259440:intron 20.0%
!!! ATATTTACAATTTTTCGGAT+TGG + chr8_2:61085806-61085825 Msa1259440:intron 20.0%
!!! AAAGTTGTTTTTTTATTACC+CGG - chr8_2:61086457-61086476 None:intergenic 20.0%
!!! TTTATAAGTTGATTTTCAAG+TGG - chr8_2:61086533-61086552 None:intergenic 20.0%
!! TAAAATCAGACTTTGATATT+TGG - chr8_2:61086907-61086926 None:intergenic 20.0%
!!! ATTCCGAATAGTTTTTTTTA+AGG + chr8_2:61086940-61086959 Msa1259440:intron 20.0%
!!! TTTTTTATGGAATAGCTATT+AGG - chr8_2:61086972-61086991 None:intergenic 20.0%
!!! AACAATCAGGATTTTTTTTA+TGG - chr8_2:61086985-61087004 None:intergenic 20.0%
!! TATTTATAGATTAGGAATGT+GGG - chr8_2:61087235-61087254 None:intergenic 20.0%
!!! TTTTCCTTTTTATAATCACT+AGG + chr8_2:61087676-61087695 Msa1259440:intron 20.0%
!! ATTTCCTAGTGATTATAAAA+AGG - chr8_2:61087683-61087702 None:intergenic 20.0%
!! ATAGTAACAGTAGAAATTTA+AGG - chr8_2:61087728-61087747 None:intergenic 20.0%
!!! ACACAAGTATTAGTTTTTAT+AGG + chr8_2:61087828-61087847 Msa1259440:intron 20.0%
!!! CTTTGAAAATAAGATAGAAA+AGG + chr8_2:61082112-61082131 Msa1259440:CDS 20.0%
!!! CTCAAGTATTGGTTTTTTAT+AGG + chr8_2:61081720-61081739 Msa1259440:intron 25.0%
! AAACAAAGATTAAGAAAGTG+CGG + chr8_2:61082138-61082157 Msa1259440:CDS 25.0%
!!! ATGATTGATTTTTCTGATCT+TGG + chr8_2:61082338-61082357 Msa1259440:CDS 25.0%
! TATAATCAGGATTAACAACT+TGG - chr8_2:61082532-61082551 None:intergenic 25.0%
! TGGATAAATCAATTAGATGA+TGG + chr8_2:61082641-61082660 Msa1259440:CDS 25.0%
!! TTTTTAATCTCAGAAAGAAG+AGG + chr8_2:61082715-61082734 Msa1259440:intron 25.0%
!! TTTTAATCTCAGAAAGAAGA+GGG + chr8_2:61082716-61082735 Msa1259440:intron 25.0%
! ACTTAAATTAAACAACTCGA+TGG - chr8_2:61082893-61082912 None:intergenic 25.0%
! GGAACATGTTCATAATATAT+TGG - chr8_2:61083021-61083040 None:intergenic 25.0%
!!! TATTTTTATGTAAGATGAGG+CGG - chr8_2:61083137-61083156 None:intergenic 25.0%
!!! AATGTTTTCAAGAAGTAAAC+AGG - chr8_2:61083166-61083185 None:intergenic 25.0%
!! TAAAACCAACACAAGTTTTA+GGG + chr8_2:61083395-61083414 Msa1259440:intron 25.0%
!!! ATCTAGTTCTATGAACTTAA+GGG - chr8_2:61083457-61083476 None:intergenic 25.0%
!!! AATCTAGTTCTATGAACTTA+AGG - chr8_2:61083458-61083477 None:intergenic 25.0%
!! ATACGTGAGATTTTCTAATA+TGG + chr8_2:61083689-61083708 Msa1259440:intron 25.0%
!! TATTTGAAACTCCTCTAAAT+TGG - chr8_2:61083821-61083840 None:intergenic 25.0%
! CAATGCAAAATTATGCAAAT+CGG + chr8_2:61083943-61083962 Msa1259440:intron 25.0%
! TTCTTCTTGAAACTTATCTT+GGG - chr8_2:61084065-61084084 None:intergenic 25.0%
! TTTCTTCTTGAAACTTATCT+TGG - chr8_2:61084066-61084085 None:intergenic 25.0%
! AATTAGTGCAAAAAATACAC+TGG + chr8_2:61084157-61084176 Msa1259440:intron 25.0%
!!! TTTATATGCTGATTTATGAG+TGG - chr8_2:61084276-61084295 None:intergenic 25.0%
! ATCATTCATTCAGAATGAAT+AGG + chr8_2:61084316-61084335 Msa1259440:intron 25.0%
! GGTAAATAAGAATTCCAATA+AGG - chr8_2:61084368-61084387 None:intergenic 25.0%
! CTTATTTACCATGTTCTTTA+TGG + chr8_2:61084378-61084397 Msa1259440:intron 25.0%
! AAGAAAATCCATAAAGAACA+TGG - chr8_2:61084389-61084408 None:intergenic 25.0%
! ACCCTTGGAATAAATTAATT+GGG + chr8_2:61084417-61084436 Msa1259440:intron 25.0%
! ACCCAATTAATTTATTCCAA+GGG - chr8_2:61084421-61084440 None:intergenic 25.0%
! AACCCAATTAATTTATTCCA+AGG - chr8_2:61084422-61084441 None:intergenic 25.0%
! GTAGAAATATTATTGTCGAT+CGG + chr8_2:61084884-61084903 Msa1259440:intron 25.0%
! ATTTATAGATTAGGATTGTG+GGG - chr8_2:61085253-61085272 None:intergenic 25.0%
! GTATTTATAGATTAGGATTG+TGG - chr8_2:61085255-61085274 None:intergenic 25.0%
!! AATGTTTTCACAAAGTAAAC+AGG - chr8_2:61085352-61085371 None:intergenic 25.0%
! AAGAAGATAAAGTGATAGTT+AGG + chr8_2:61085453-61085472 Msa1259440:intron 25.0%
!! TTCTACATTTTCATTGTTTC+AGG + chr8_2:61085511-61085530 Msa1259440:intron 25.0%
!!! AAAAGAGACTTTTAAAGTGA+AGG - chr8_2:61085547-61085566 None:intergenic 25.0%
!!! GATTGTTTTACTTGTTAACT+CGG - chr8_2:61085572-61085591 None:intergenic 25.0%
!! GTAAAACAATCACAAGTTTT+AGG + chr8_2:61085581-61085600 Msa1259440:intron 25.0%
!!! AACTAGTTCTATGAACTTAA+GGG - chr8_2:61085648-61085667 None:intergenic 25.0%
!!! AAACTAGTTCTATGAACTTA+AGG - chr8_2:61085649-61085668 None:intergenic 25.0%
!!! AGAACTAGTTTTATATGAAG+AGG + chr8_2:61085658-61085677 Msa1259440:intron 25.0%
! TAAAACCACAAAAAGATAGA+AGG + chr8_2:61085727-61085746 Msa1259440:intron 25.0%
!!! TAAGTTTTGATCCAATTTAG+AGG + chr8_2:61086046-61086065 Msa1259440:intron 25.0%
! GCAAATTTAATCATGCAAAT+CGG + chr8_2:61086183-61086202 Msa1259440:intron 25.0%
! AAGTCTCAAGATAAATTTCA+AGG + chr8_2:61086298-61086317 Msa1259440:intron 25.0%
! ACTTAAAAAGACCAAGAAAA+AGG + chr8_2:61086329-61086348 Msa1259440:intron 25.0%
! AATGAATGATTATGAATGAG+AGG - chr8_2:61086563-61086582 None:intergenic 25.0%
! ATGGTAAATAAACCCAATAA+GGG - chr8_2:61086624-61086643 None:intergenic 25.0%
! ATCCGATTAATTTATTCGAT+GGG - chr8_2:61086668-61086687 None:intergenic 25.0%
! TATCCGATTAATTTATTCGA+TGG - chr8_2:61086669-61086688 None:intergenic 25.0%
! AAATCTTGTATTGAACAATC+AGG - chr8_2:61086998-61087017 None:intergenic 25.0%
! GTATTTATAGATTAGGAATG+TGG - chr8_2:61087236-61087255 None:intergenic 25.0%
! AAGGGATGTATTTATAGATT+AGG - chr8_2:61087243-61087262 None:intergenic 25.0%
! AAACAAAAAGAGTGAAGTAA+GGG - chr8_2:61087277-61087296 None:intergenic 25.0%
!!! AACGTGTTTTTTACCTTAAA+CGG - chr8_2:61087350-61087369 None:intergenic 25.0%
! TAAATAGAATGACATATGGA+GGG - chr8_2:61087517-61087536 None:intergenic 25.0%
! ATAAATAGAATGACATATGG+AGG - chr8_2:61087518-61087537 None:intergenic 25.0%
! ACTAGGAAATTTCAAATAGA+TGG + chr8_2:61087693-61087712 Msa1259440:intron 25.0%
! AAACAAAGATTAAGAAAGTG+CGG + chr8_2:61082138-61082157 Msa1259440:CDS 25.0%
!!! ATGATTGATTTTTCTGATCT+TGG + chr8_2:61082338-61082357 Msa1259440:CDS 25.0%
! TATAATCAGGATTAACAACT+TGG - chr8_2:61082532-61082551 None:intergenic 25.0%
! TGGATAAATCAATTAGATGA+TGG + chr8_2:61082641-61082660 Msa1259440:CDS 25.0%
TTATAGGATTCAGCAAGAAA+AGG + chr8_2:61081736-61081755 Msa1259440:intron 30.0%
TATAGGATTCAGCAAGAAAA+GGG + chr8_2:61081737-61081756 Msa1259440:intron 30.0%
! GCATTTTGGATGTATTTCAT+AGG - chr8_2:61081861-61081880 None:intergenic 30.0%
! TCTGAATTTTGTAAGAAGTC+TGG + chr8_2:61081936-61081955 Msa1259440:CDS 30.0%
TCCTGAGATATTTGATGTTA+AGG + chr8_2:61082085-61082104 Msa1259440:CDS 30.0%
TCCTTAACATCAAATATCTC+AGG - chr8_2:61082089-61082108 None:intergenic 30.0%
TCATCCAAGTTACTAAAATG+TGG - chr8_2:61082200-61082219 None:intergenic 30.0%
AATCATGTCACATATATCCA+AGG - chr8_2:61082324-61082343 None:intergenic 30.0%
TATAATCAGGATCAACAACT+TGG - chr8_2:61082421-61082440 None:intergenic 30.0%
ACAATCTCACTCATATAATC+AGG - chr8_2:61082545-61082564 None:intergenic 30.0%
TGATTATATGAGTGAGATTG+TGG + chr8_2:61082544-61082563 Msa1259440:CDS 30.0%
TCTTTCCAAAAAAACTCATC+AGG - chr8_2:61082689-61082708 None:intergenic 30.0%
!! AGTTTTGATGGTTTGAAACT+AGG + chr8_2:61082746-61082765 Msa1259440:intron 30.0%
! TAAATTATACGTGCTGTTGA+TGG - chr8_2:61082938-61082957 None:intergenic 30.0%
! CATATTGTAAAACTCTGAAG+AGG + chr8_2:61083111-61083130 Msa1259440:intron 30.0%
ATTCTCGTATCTCTTTGTTA+AGG - chr8_2:61083222-61083241 None:intergenic 30.0%
!!! GTTGGTTTTACATGTTAACT+CGG - chr8_2:61083385-61083404 None:intergenic 30.0%
! GTAAAACCAACACAAGTTTT+AGG + chr8_2:61083394-61083413 Msa1259440:intron 30.0%
AGAACTAGATTTCTATGAAG+AGG + chr8_2:61083467-61083486 Msa1259440:intron 30.0%
AACCAGAACCATAATTAATG+TGG + chr8_2:61083505-61083524 Msa1259440:intron 30.0%
TAAGGATGCCACATTAATTA+TGG - chr8_2:61083516-61083535 None:intergenic 30.0%
!! TATCTTTCTGTGGTGTTATA+AGG - chr8_2:61083534-61083553 None:intergenic 30.0%
TTATAACACCACAGAAAGAT+AGG + chr8_2:61083533-61083552 Msa1259440:intron 30.0%
AAGACACACTCAAGTTATTA+TGG + chr8_2:61083634-61083653 Msa1259440:intron 30.0%
TTAGAAAATCTCACGTATTG+TGG - chr8_2:61083687-61083706 None:intergenic 30.0%
TAAGATGAGTTGTCATTAGA+GGG - chr8_2:61083753-61083772 None:intergenic 30.0%
!! TAGGTTTTGATCCAATTTAG+AGG + chr8_2:61083807-61083826 Msa1259440:intron 30.0%
ACATCAAAAAGACCAAAGAA+CGG - chr8_2:61083919-61083938 None:intergenic 30.0%
! AAAGCATCTCATAAGGATTT+GGG + chr8_2:61083972-61083991 Msa1259440:intron 30.0%
!!! AAAGCTGTTTTTTTTCCCAA+AGG - chr8_2:61084200-61084219 None:intergenic 30.0%
!!! CTTTTTGTTGTTTTTCTCTG+CGG + chr8_2:61084216-61084235 Msa1259440:intron 30.0%
!!! TTTTTGTTGTTTTTCTCTGC+GGG + chr8_2:61084217-61084236 Msa1259440:intron 30.0%
TGGATTTGAGCTGAAAAATT+GGG - chr8_2:61084256-61084275 None:intergenic 30.0%
AATGAATGATTGTGAATGAG+AGG - chr8_2:61084306-61084325 None:intergenic 30.0%
ATTAGATTCAAGTCCATCTA+AGG - chr8_2:61084343-61084362 None:intergenic 30.0%
GACCCTTGGAATAAATTAAT+TGG + chr8_2:61084416-61084435 Msa1259440:intron 30.0%
TTGTGCACATTAGAACATTT+CGG + chr8_2:61084494-61084513 Msa1259440:intron 30.0%
ATGAAATCCAAAACGATGTA+GGG - chr8_2:61084548-61084567 None:intergenic 30.0%
TATGAAATCCAAAACGATGT+AGG - chr8_2:61084549-61084568 None:intergenic 30.0%
ATTTCATAATCCAAACCAGA+TGG + chr8_2:61084561-61084580 Msa1259440:intron 30.0%
!! GTTTATTTTTCCATCTGGTT+TGG - chr8_2:61084574-61084593 None:intergenic 30.0%
!! TGAGAGTTTATTTTTCCATC+TGG - chr8_2:61084579-61084598 None:intergenic 30.0%
ATATAATGAAAAACGCACGT+TGG + chr8_2:61084862-61084881 Msa1259440:intron 30.0%
AAATTTCGCCGTGATAATTA+GGG + chr8_2:61085175-61085194 Msa1259440:intron 30.0%
!! TTGATTTTGTTTCCCAAATC+AGG + chr8_2:61085221-61085240 Msa1259440:intron 30.0%
GAGGGATGTATTTATAGATT+AGG - chr8_2:61085262-61085281 None:intergenic 30.0%
TCACTTTATCTTCTTTCCAT+CGG - chr8_2:61085448-61085467 None:intergenic 30.0%
! AGTTAGGAATGATGCATTTT+CGG + chr8_2:61085469-61085488 Msa1259440:intron 30.0%
TTCGTATCTCTTACTTTGAT+AGG - chr8_2:61085852-61085871 None:intergenic 30.0%
TCGTAAAATCTCACGTATTA+TGG - chr8_2:61085957-61085976 None:intergenic 30.0%
TTAAGATGACTGTCATTAGA+GGG - chr8_2:61085997-61086016 None:intergenic 30.0%
!! GTTCTAAAACTCCTCTAAAT+TGG - chr8_2:61086060-61086079 None:intergenic 30.0%
!!! TAGAGGAGTTTTAGAACAAT+TGG + chr8_2:61086063-61086082 Msa1259440:intron 30.0%
!!! AGTTTTAGAACAATTGGCTA+TGG + chr8_2:61086069-61086088 Msa1259440:intron 30.0%
ATGAGAATTTGTGAAGACAA+TGG + chr8_2:61086222-61086241 Msa1259440:intron 30.0%
TGAGAATTTGTGAAGACAAT+GGG + chr8_2:61086223-61086242 Msa1259440:intron 30.0%
! TCTCTAAAGACATTACAAAG+TGG + chr8_2:61086261-61086280 Msa1259440:intron 30.0%
TGGATTTGGATTGAAAAACT+GGG - chr8_2:61086513-61086532 None:intergenic 30.0%
!!! AGTTGATTTTCAAGTGGATT+TGG - chr8_2:61086527-61086546 None:intergenic 30.0%
ATTAGATTCAAGTCCATCTA+AGG - chr8_2:61084343-61084362 None:intergenic 30.0%
TTGAATCTAATCCCCTTATT+GGG + chr8_2:61084352-61084371 Msa1259440:intron 30.0%
TGGTAAATAAACCCAATAAG+GGG - chr8_2:61086623-61086642 None:intergenic 30.0%
CATGGTAAATAAACCCAATA+AGG - chr8_2:61086625-61086644 None:intergenic 30.0%
GACCCATCGAATAAATTAAT+CGG + chr8_2:61086663-61086682 Msa1259440:intron 30.0%
!!! AGATTTTTTTCTCCATTCTC+CGG + chr8_2:61086717-61086736 Msa1259440:intron 30.0%
ATGAAATCCAAAATGTTGCA+TGG - chr8_2:61086803-61086822 None:intergenic 30.0%
AATTTCGCCGTGTAATAATT+AGG + chr8_2:61087157-61087176 Msa1259440:intron 30.0%
ATTTCGCCGTGTAATAATTA+GGG + chr8_2:61087158-61087177 Msa1259440:intron 30.0%
TTCTTGCCCTAATTATTACA+CGG - chr8_2:61087167-61087186 None:intergenic 30.0%
! GTAAGGGTTTAGTTTAACAA+GGG - chr8_2:61087261-61087280 None:intergenic 30.0%
! AGTAAGGGTTTAGTTTAACA+AGG - chr8_2:61087262-61087281 None:intergenic 30.0%
CAAACAAAAAGAGTGAAGTA+AGG - chr8_2:61087278-61087297 None:intergenic 30.0%
! TCTGAATTTTGTAAGAAGTC+TGG + chr8_2:61081936-61081955 Msa1259440:CDS 30.0%
ATAATATTGAACCTACGACA+TGG + chr8_2:61088106-61088125 Msa1259440:CDS 30.0%
TCCTGAGATATTTGATGTTA+AGG + chr8_2:61082085-61082104 Msa1259440:CDS 30.0%
TCCTTAACATCAAATATCTC+AGG - chr8_2:61082089-61082108 None:intergenic 30.0%
TCATCCAAGTTACTAAAATG+TGG - chr8_2:61082200-61082219 None:intergenic 30.0%
AATCATGTCACATATATCCA+AGG - chr8_2:61082324-61082343 None:intergenic 30.0%
TATAATCAGGATCAACAACT+TGG - chr8_2:61082421-61082440 None:intergenic 30.0%
ACAATCTCACTCATATAATC+AGG - chr8_2:61082545-61082564 None:intergenic 30.0%
TGATTATATGAGTGAGATTG+TGG + chr8_2:61082544-61082563 Msa1259440:CDS 30.0%
ATAGGATTCAGCAAGAAAAG+GGG + chr8_2:61081738-61081757 Msa1259440:intron 35.0%
! GTTTGCGAGATTTTGCATTT+TGG - chr8_2:61081875-61081894 None:intergenic 35.0%
ACTTTCAAACAGAGAAAGCA+TGG + chr8_2:61081897-61081916 Msa1259440:CDS 35.0%
! GCTTGCTTTATTGTGTATGA+TGG + chr8_2:61081966-61081985 Msa1259440:CDS 35.0%
ATAATGTTGAACCAACGACA+TGG + chr8_2:61081997-61082016 Msa1259440:CDS 35.0%
TTTACACTTGTAAGGTCTTC+TGG - chr8_2:61082023-61082042 None:intergenic 35.0%
ATTCTGATACTCTTGAAGCA+AGG - chr8_2:61082048-61082067 None:intergenic 35.0%
TAAAATGTGGATGCCAAGTT+GGG - chr8_2:61082187-61082206 None:intergenic 35.0%
!! GCATCCACATTTTAGTAACT+TGG + chr8_2:61082193-61082212 Msa1259440:CDS 35.0%
ACAAATAGAAACTAGCACCT+TGG + chr8_2:61082304-61082323 Msa1259440:CDS 35.0%
TCCTGATTATACAAGTGAGA+TGG + chr8_2:61082430-61082449 Msa1259440:CDS 35.0%
ACCATCTCACTTGTATAATC+AGG - chr8_2:61082434-61082453 None:intergenic 35.0%
TGATTATACAAGTGAGATGG+TGG + chr8_2:61082433-61082452 Msa1259440:CDS 35.0%
!! TGGTTTGATGATGAACTAGA+AGG - chr8_2:61082482-61082501 None:intergenic 35.0%
TCATCATCAAACCAACTTAG+TGG + chr8_2:61082488-61082507 Msa1259440:CDS 35.0%
CATCATCAAACCAACTTAGT+GGG + chr8_2:61082489-61082508 Msa1259440:CDS 35.0%
! ATTGTGGATTTCACTAGTCT+TGG + chr8_2:61082560-61082579 Msa1259440:CDS 35.0%
! GATCAACAAGTTGACTAAGT+TGG - chr8_2:61082613-61082632 None:intergenic 35.0%
!! AACTTGTTGATCTTGATGAC+TGG + chr8_2:61082621-61082640 Msa1259440:CDS 35.0%
!!! GTCAACCTGATGAGTTTTTT+TGG + chr8_2:61082681-61082700 Msa1259440:intron 35.0%
CTATGTTTGTGTTGTGAACT+TGG + chr8_2:61082838-61082857 Msa1259440:intron 35.0%
TTGTTAGCAATTGCTCTCTA+AGG + chr8_2:61082975-61082994 Msa1259440:intron 35.0%
CTTGAAGTGAGTCATTCTAA+TGG + chr8_2:61083242-61083261 Msa1259440:intron 35.0%
TCAATCCCTAAAACTTGTGT+TGG - chr8_2:61083403-61083422 None:intergenic 35.0%
TGCCACATTAATTATGGTTC+TGG - chr8_2:61083510-61083529 None:intergenic 35.0%
GTAAGATGAGTTGTCATTAG+AGG - chr8_2:61083754-61083773 None:intergenic 35.0%
AAAAAGACCAAAGAACGGTT+TGG - chr8_2:61083914-61083933 None:intergenic 35.0%
! CAAAGCATCTCATAAGGATT+TGG + chr8_2:61083971-61083990 Msa1259440:intron 35.0%
CCACTTTGTAATATCTTCAG+AGG - chr8_2:61084024-61084043 None:intergenic 35.0%
! CCTCTGAAGATATTACAAAG+TGG + chr8_2:61084021-61084040 Msa1259440:intron 35.0%
TTGAAACTTATCTTGGGACT+TGG - chr8_2:61084059-61084078 None:intergenic 35.0%
AGAAAAAGACGAAAACGCAT+TGG + chr8_2:61084104-61084123 Msa1259440:intron 35.0%
GTGGATTTGAGCTGAAAAAT+TGG - chr8_2:61084257-61084276 None:intergenic 35.0%
AGAATGAATAGGTCCTTAGA+TGG + chr8_2:61084327-61084346 Msa1259440:intron 35.0%
CTTGAATCTAATCCCCTTAT+TGG + chr8_2:61084351-61084370 Msa1259440:intron 35.0%
! AAAAACACCCTACATCGTTT+TGG + chr8_2:61084538-61084557 Msa1259440:intron 35.0%
GAAATTTCGCCGTGATAATT+AGG + chr8_2:61085174-61085193 Msa1259440:intron 35.0%
TCTTGTTGCCCTAATTATCA+CGG - chr8_2:61085186-61085205 None:intergenic 35.0%
AAGACACAATCAAGTTATCG+TGG + chr8_2:61085881-61085900 Msa1259440:intron 35.0%
CTTAAGATGACTGTCATTAG+AGG - chr8_2:61085998-61086017 None:intergenic 35.0%
!! ACCAAAGAACGACTTGTTTT+CGG - chr8_2:61086144-61086163 None:intergenic 35.0%
!! ACAATGGGTTATGATTCAAG+AGG + chr8_2:61086238-61086257 Msa1259440:intron 35.0%
! ATGCATTTTCGCCTTTTTCT+TGG - chr8_2:61086343-61086362 None:intergenic 35.0%
AAAAGGCGAAAATGCATAAG+AGG + chr8_2:61086346-61086365 Msa1259440:intron 35.0%
! TGTTTTTCTCTGCAGATTTG+AGG + chr8_2:61086481-61086500 Msa1259440:intron 35.0%
! GTTTTTCTCTGCAGATTTGA+GGG + chr8_2:61086482-61086501 Msa1259440:intron 35.0%
GTGGATTTGGATTGAAAAAC+TGG - chr8_2:61086514-61086533 None:intergenic 35.0%
AGAATGAAGTAGTCCTTAGA+TGG + chr8_2:61086584-61086603 Msa1259440:intron 35.0%
CTTGAATCTAATCCCCTTAT+TGG + chr8_2:61084351-61084370 Msa1259440:intron 35.0%
GTCTAACAAGAAGAGAAACA+TGG - chr8_2:61086643-61086662 None:intergenic 35.0%
AATGTTGTAGTGCACATGAA+GGG - chr8_2:61086743-61086762 None:intergenic 35.0%
AAATGTTGTAGTGCACATGA+AGG - chr8_2:61086744-61086763 None:intergenic 35.0%
ATCCAAAATGTTGCATGGTA+GGG - chr8_2:61086798-61086817 None:intergenic 35.0%
AATCCAAAATGTTGCATGGT+AGG - chr8_2:61086799-61086818 None:intergenic 35.0%
!!! GTGTTTTTTACCTTAAACGG+TGG - chr8_2:61087347-61087366 None:intergenic 35.0%
TGGTTCTTTGCTTTCTTTCT+GGG - chr8_2:61087568-61087587 None:intergenic 35.0%
ATGGTTCTTTGCTTTCTTTC+TGG - chr8_2:61087569-61087588 None:intergenic 35.0%
! AAACGTTGAGATGAGTTGAA+TGG - chr8_2:61087588-61087607 None:intergenic 35.0%
! CTCATCTCAACGTTTTATGT+CGG + chr8_2:61087593-61087612 Msa1259440:intron 35.0%
! TCATCTCAACGTTTTATGTC+GGG + chr8_2:61087594-61087613 Msa1259440:intron 35.0%
TTATAGGACTCAGCAAGAAA+AGG + chr8_2:61087844-61087863 Msa1259440:intron 35.0%
TATAGGACTCAGCAAGAAAA+GGG + chr8_2:61087845-61087864 Msa1259440:intron 35.0%
GCACTTTGGATGTATTTCAT+AGG - chr8_2:61087970-61087989 None:intergenic 35.0%
ACTTTCAAACAGAGAAAGCA+TGG + chr8_2:61081897-61081916 Msa1259440:CDS 35.0%
! GCTTGCTTTATTGTGTATGA+TGG + chr8_2:61081966-61081985 Msa1259440:CDS 35.0%
TTTACACTTGTAAGGTCTTC+TGG - chr8_2:61082023-61082042 None:intergenic 35.0%
ATTCTGATACTCTTGAAGCA+AGG - chr8_2:61082048-61082067 None:intergenic 35.0%
TAAAATGTGGATGCCAAGTT+GGG - chr8_2:61082187-61082206 None:intergenic 35.0%
!! GCATCCACATTTTAGTAACT+TGG + chr8_2:61082193-61082212 Msa1259440:CDS 35.0%
ACAAATAGAAACTAGCACCT+TGG + chr8_2:61082304-61082323 Msa1259440:CDS 35.0%
TCCTGATTATACAAGTGAGA+TGG + chr8_2:61082430-61082449 Msa1259440:CDS 35.0%
ACCATCTCACTTGTATAATC+AGG - chr8_2:61082434-61082453 None:intergenic 35.0%
TGATTATACAAGTGAGATGG+TGG + chr8_2:61082433-61082452 Msa1259440:CDS 35.0%
!! AGTTGGTTTGATGATGAACT+AGG - chr8_2:61082485-61082504 None:intergenic 35.0%
TCATCATCAAACCAACTTAG+TGG + chr8_2:61082488-61082507 Msa1259440:CDS 35.0%
CATCATCAAACCAACTTAGT+GGG + chr8_2:61082489-61082508 Msa1259440:CDS 35.0%
! ATTGTGGATTTCACTAGTCT+TGG + chr8_2:61082560-61082579 Msa1259440:CDS 35.0%
! GATCAACAAGTTGACTAAGT+TGG - chr8_2:61082613-61082632 None:intergenic 35.0%
!! AACTTGTTGATCTTGATGAC+TGG + chr8_2:61082621-61082640 Msa1259440:CDS 35.0%
TCTTTCCAAAAAAACTCACC+AGG - chr8_2:61088798-61088817 None:intergenic 35.0%
! TTGTAAGAAGTCTGGAGCAA+AGG + chr8_2:61081944-61081963 Msa1259440:CDS 40.0%
GCAAGGAGTTTACACTTGTA+AGG - chr8_2:61082031-61082050 None:intergenic 40.0%
AAGTTGGGTAGATCTTAGTG+AGG - chr8_2:61082172-61082191 None:intergenic 40.0%
TCACTAAGATCTACCCAACT+TGG + chr8_2:61082171-61082190 Msa1259440:CDS 40.0%
CTAAAATGTGGATGCCAAGT+TGG - chr8_2:61082188-61082207 None:intergenic 40.0%
!! AGTTGGTTTGATGGTGAACT+AGG - chr8_2:61082374-61082393 None:intergenic 40.0%
TCACCATCAAACCAACTTAG+TGG + chr8_2:61082377-61082396 Msa1259440:CDS 40.0%
CACCATCAAACCAACTTAGT+GGG + chr8_2:61082378-61082397 Msa1259440:CDS 40.0%
!! AGTTGGTTTGCTGATGAACT+TGG - chr8_2:61082596-61082615 None:intergenic 40.0%
!! TAGATGATGGTGTTTTGTGC+TGG + chr8_2:61082654-61082673 Msa1259440:CDS 40.0%
!! AGATGATGGTGTTTTGTGCT+GGG + chr8_2:61082655-61082674 Msa1259440:CDS 40.0%
TAATCTCAGAAAGAAGAGGG+TGG + chr8_2:61082719-61082738 Msa1259440:intron 40.0%
!! CACTTTACCCTCTAGAGTAT+AGG + chr8_2:61083059-61083078 Msa1259440:intron 40.0%
AGTGAGACCTATACTCTAGA+GGG - chr8_2:61083069-61083088 None:intergenic 40.0%
AAGTGAGACCTATACTCTAG+AGG - chr8_2:61083070-61083089 None:intergenic 40.0%
! AAAAGAGACCTTTGAAGGGA+AGG - chr8_2:61083360-61083379 None:intergenic 40.0%
GGAGAAAAGAGACCTTTGAA+GGG - chr8_2:61083364-61083383 None:intergenic 40.0%
ATTCGACTCCTATCTTTCTG+TGG - chr8_2:61083544-61083563 None:intergenic 40.0%
!!! CCAAAGAACGGTTTGGTTTT+GGG - chr8_2:61083907-61083926 None:intergenic 40.0%
!!! ACCAAAGAACGGTTTGGTTT+TGG - chr8_2:61083908-61083927 None:intergenic 40.0%
! GCAAAGCAAAGCATCTCATA+AGG + chr8_2:61083965-61083984 Msa1259440:intron 40.0%
AAAAGACGAAAACGCATTGG+AGG + chr8_2:61084107-61084126 Msa1259440:intron 40.0%
TTTGCACTAATTCACACACC+CGG - chr8_2:61084149-61084168 None:intergenic 40.0%
! TTTTCTTGTTAGACGACCCT+TGG + chr8_2:61084402-61084421 Msa1259440:intron 40.0%
GCACAAGAAGCTTAAAGACT+GGG - chr8_2:61084480-61084499 None:intergenic 40.0%
TGCACAAGAAGCTTAAAGAC+TGG - chr8_2:61084481-61084500 None:intergenic 40.0%
CACATATAAGAAACGCACGT+TGG + chr8_2:61085149-61085168 Msa1259440:intron 40.0%
TATGTCCAAAGTGAGCTAGA+GGG - chr8_2:61085302-61085321 None:intergenic 40.0%
AGTCTCGTTTCTCGTTGTTA+AGG - chr8_2:61085409-61085428 None:intergenic 40.0%
! TTTGAAGTGAGTCATTCCGA+TGG + chr8_2:61085429-61085448 Msa1259440:intron 40.0%
! CGACTCCTTCTATCTTTTTG+TGG - chr8_2:61085735-61085754 None:intergenic 40.0%
!! CCAAAGAACGACTTGTTTTC+GGG - chr8_2:61086143-61086162 None:intergenic 40.0%
!!! GCTAGTGCATTTTTTTGCAC+TGG - chr8_2:61086421-61086440 None:intergenic 40.0%
AAGATCATCTCCACCGTTTA+AGG + chr8_2:61087334-61087353 Msa1259440:intron 40.0%
ATAGGACTCAGCAAGAAAAG+GGG + chr8_2:61087846-61087865 Msa1259440:intron 40.0%
! TTTTGCGAGATTTCGCACTT+TGG - chr8_2:61087984-61088003 None:intergenic 40.0%
! TTGTAAGAAGTCTGGAGCAA+AGG + chr8_2:61081944-61081963 Msa1259440:CDS 40.0%
GCAAGGAGTTTACACTTGTA+AGG - chr8_2:61082031-61082050 None:intergenic 40.0%
AAGTTGGGTAGATCTTAGTG+AGG - chr8_2:61082172-61082191 None:intergenic 40.0%
TCACTAAGATCTACCCAACT+TGG + chr8_2:61082171-61082190 Msa1259440:CDS 40.0%
CTAAAATGTGGATGCCAAGT+TGG - chr8_2:61082188-61082207 None:intergenic 40.0%
!! AGTTGGTTTGATGGTGAACT+AGG - chr8_2:61082374-61082393 None:intergenic 40.0%
TCACCATCAAACCAACTTAG+TGG + chr8_2:61082377-61082396 Msa1259440:CDS 40.0%
CACCATCAAACCAACTTAGT+GGG + chr8_2:61082378-61082397 Msa1259440:CDS 40.0%
!! TGGTTTGATGATGAACTAGG+AGG - chr8_2:61088591-61088610 None:intergenic 40.0%
!! AGTTGGTTTGCTGATGAACT+TGG - chr8_2:61082596-61082615 None:intergenic 40.0%
!! TAGATGATGGTGTTTTGTGC+TGG + chr8_2:61082654-61082673 Msa1259440:CDS 40.0%
!! AGATGATGGTGTTTTGTGCT+GGG + chr8_2:61082655-61082674 Msa1259440:CDS 40.0%
!!! GTCAACCTGGTGAGTTTTTT+TGG + chr8_2:61088790-61088809 Msa1259440:CDS 40.0%
!! TGGTTTGATGGTGAACTAGG+AGG - chr8_2:61082371-61082390 None:intergenic 45.0%
!! AGCCCACTAAGTTGGTTTGA+TGG - chr8_2:61082383-61082402 None:intergenic 45.0%
!! AAACCAACTTAGTGGGCTTG+TGG + chr8_2:61082385-61082404 Msa1259440:CDS 45.0%
!! ATGGTGGATTTCACCAGTCT+TGG + chr8_2:61082449-61082468 Msa1259440:CDS 45.0%
AGAAGGCAAATCACCAAGAC+TGG - chr8_2:61082465-61082484 None:intergenic 45.0%
!! AAACCAACTTAGTGGGCTTG+TGG + chr8_2:61082385-61082404 Msa1259440:CDS 45.0%
!! TGGTTTGCTGATGAACTTGG+AGG - chr8_2:61082593-61082612 None:intergenic 45.0%
!! GTGCTGAGTTGATGGAGTAA+TGG - chr8_2:61083042-61083061 None:intergenic 45.0%
!! AGGGTAAAGTGCTGAGTTGA+TGG - chr8_2:61083050-61083069 None:intergenic 45.0%
ATGCAAGACCTTCCCTTCAA+AGG + chr8_2:61083349-61083368 Msa1259440:intron 45.0%
CGGAGAAAAGAGACCTTTGA+AGG - chr8_2:61083365-61083384 None:intergenic 45.0%
CCCAAAACCAAACCGTTCTT+TGG + chr8_2:61083904-61083923 Msa1259440:intron 45.0%
TTGCACTAATTCACACACCC+GGG - chr8_2:61084148-61084167 None:intergenic 45.0%
AAAAAATACACTGGCGCGTG+AGG + chr8_2:61084166-61084185 Msa1259440:intron 45.0%
! TGTTTTTCTCTGCGGGTTTG+AGG + chr8_2:61084224-61084243 Msa1259440:intron 45.0%
! GTTTTTCTCTGCGGGTTTGA+GGG + chr8_2:61084225-61084244 Msa1259440:intron 45.0%
GTGGGGTTATAGCCTGATTT+GGG - chr8_2:61085236-61085255 None:intergenic 45.0%
TGTGGGGTTATAGCCTGATT+TGG - chr8_2:61085237-61085256 None:intergenic 45.0%
! TACATCCCTCTAGCTCACTT+TGG + chr8_2:61085294-61085313 Msa1259440:intron 45.0%
GTATGTCCAAAGTGAGCTAG+AGG - chr8_2:61085303-61085322 None:intergenic 45.0%
CCCGAAAACAAGTCGTTCTT+TGG + chr8_2:61086140-61086159 Msa1259440:intron 45.0%
AATGCATAAGAGGACAGCAG+CGG + chr8_2:61086356-61086375 Msa1259440:intron 45.0%
AGGCGAACAACATCACACTA+AGG - chr8_2:61086386-61086405 None:intergenic 45.0%
TAGTGTGATGTTGTTCGCCT+TGG + chr8_2:61086386-61086405 Msa1259440:intron 45.0%
AGTGTGATGTTGTTCGCCTT+GGG + chr8_2:61086387-61086406 Msa1259440:intron 45.0%
! CACCCTACCATGCAACATTT+TGG + chr8_2:61086793-61086812 Msa1259440:intron 45.0%
GTGGGCTTACAGCTTGATTT+GGG - chr8_2:61087217-61087236 None:intergenic 45.0%
TGTGGGCTTACAGCTTGATT+TGG - chr8_2:61087218-61087237 None:intergenic 45.0%
! CTTTCTGGGTGCAAGTTGAA+TGG - chr8_2:61087554-61087573 None:intergenic 45.0%
!! TGGTTTGATGGTGAACTAGG+AGG - chr8_2:61082371-61082390 None:intergenic 45.0%
!! AGCCCACTAAGTTGGTTTGA+TGG - chr8_2:61082383-61082402 None:intergenic 45.0%
!! AAACCAACTTAGTGGGCTTG+TGG + chr8_2:61082385-61082404 Msa1259440:CDS 45.0%
!! ATGGTGGATTTCACCAGTCT+TGG + chr8_2:61082449-61082468 Msa1259440:CDS 45.0%
!! AAACCAACTTAGTGGGCTTG+TGG + chr8_2:61082385-61082404 Msa1259440:CDS 45.0%
!! TGGTTTGCTGATGAACTTGG+AGG - chr8_2:61082593-61082612 None:intergenic 45.0%
!!! TTAAATAAAAGATTTAATTT+TGG - chr8_2:61084839-61084858 None:intergenic 5.0%
!!! AAGTTTTTTTTTTTATTTTA+TGG - chr8_2:61085009-61085028 None:intergenic 5.0%
!! ACAAAAAAAATAAATAAATT+AGG + chr8_2:61085043-61085062 Msa1259440:intron 5.0%
!! CAAAAAAAATAAATAAATTA+GGG + chr8_2:61085044-61085063 Msa1259440:intron 5.0%
TCTCCACAAGCCCACTAAGT+TGG - chr8_2:61082391-61082410 None:intergenic 50.0%
!! AACTTAGTGGGCTTGTGGAG+AGG + chr8_2:61082390-61082409 Msa1259440:CDS 50.0%
TCTCCACAAGCCCACTAAGT+TGG - chr8_2:61082391-61082410 None:intergenic 50.0%
!! GAGGGTGGTGCAAGTTTTGA+TGG + chr8_2:61082734-61082753 Msa1259440:intron 50.0%
TGCACTAATTCACACACCCG+GGG - chr8_2:61084147-61084166 None:intergenic 50.0%
GTGTGATGTTGTTCGCCTTG+GGG + chr8_2:61086388-61086407 Msa1259440:intron 50.0%
TGTGATGTTGTTCGCCTTGG+GGG + chr8_2:61086389-61086408 Msa1259440:intron 50.0%
AAAAAATGCACTAGCGCGCG+AGG + chr8_2:61086426-61086445 Msa1259440:intron 50.0%
TTGTAGTGCACATGAAGGGC+CGG - chr8_2:61086739-61086758 None:intergenic 50.0%
TCTCCACAAGCCCACTAAGT+TGG - chr8_2:61082391-61082410 None:intergenic 50.0%
!! AACTTAGTGGGCTTGTGGAG+AGG + chr8_2:61082390-61082409 Msa1259440:CDS 50.0%
AGGAGGCAAATCACCAAGAC+TGG - chr8_2:61088574-61088593 None:intergenic 50.0%
TCTCCACAAGCCCACTAAGT+TGG - chr8_2:61082391-61082410 None:intergenic 50.0%
TTGTGCTGGGATTGTCAACC+TGG + chr8_2:61082668-61082687 Msa1259440:CDS 50.0%
AGGTCTTCTGGCCATGTCGT+TGG - chr8_2:61082011-61082030 None:intergenic 55.0%
! AGTGGGCTTGTGGAGAGGAA+TGG + chr8_2:61082395-61082414 Msa1259440:CDS 55.0%
AACGCATTGGAGGACAGCTC+TGG + chr8_2:61084117-61084136 Msa1259440:intron 55.0%
CGTGAGGTGTGTTCGCCTTT+GGG + chr8_2:61084182-61084201 Msa1259440:intron 55.0%
AGGTCTTCTGGCCATGTCGT+AGG - chr8_2:61082011-61082030 None:intergenic 55.0%
! AGTGGGCTTGTGGAGAGGAA+TGG + chr8_2:61082395-61082414 Msa1259440:CDS 55.0%
GCGTGAGGTGTGTTCGCCTT+TGG + chr8_2:61084181-61084200 Msa1259440:intron 60.0%
GCACATGAAGGGCCGGAGAA+TGG - chr8_2:61086732-61086751 None:intergenic 60.0%
!! TGCACTGGTTCGCACCCCCA+AGG - chr8_2:61086406-61086425 None:intergenic 65.0%
! ACTAGCGCGCGAGGCGCTTC+CGG + chr8_2:61086435-61086454 Msa1259440:intron 70.0%
! AGGACAGCTCTGGCGCGCCC+CGG + chr8_2:61084127-61084146 Msa1259440:intron 75.0%
! CTAGCGCGCGAGGCGCTTCC+GGG + chr8_2:61086436-61086455 Msa1259440:intron 75.0%
!! GGACAGCTCTGGCGCGCCCC+GGG + chr8_2:61084128-61084147 Msa1259440:intron 80.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 61081717 61088830 61081717 ID=Msa1259440;Name=Msa1259440
chr8_2 mRNA 61081717 61088830 61081717 ID=Msa1259440-mRNA-1;Parent=Msa1259440;Name=Msa1259440-mRNA-1;_AED=0.03;_eAED=0.06;_QI=0|0|0|0.66|0|0|3|0|581
chr8_2 exon 61081717 61081724 61081717 ID=Msa1259440-mRNA-1:exon:19203;Parent=Msa1259440-mRNA-1
chr8_2 exon 61081839 61082693 61081839 ID=Msa1259440-mRNA-1:exon:19204;Parent=Msa1259440-mRNA-1
chr8_2 exon 61087948 61088830 61087948 ID=Msa1259440-mRNA-1:exon:19205;Parent=Msa1259440-mRNA-1
chr8_2 CDS 61081717 61081724 61081717 ID=Msa1259440-mRNA-1:cds;Parent=Msa1259440-mRNA-1
chr8_2 CDS 61081839 61082693 61081839 ID=Msa1259440-mRNA-1:cds;Parent=Msa1259440-mRNA-1
chr8_2 CDS 61087948 61088830 61087948 ID=Msa1259440-mRNA-1:cds;Parent=Msa1259440-mRNA-1
Gene Sequence

>Msa1259440

ACTCTCAAAATGGGTCGCGCAAAAATACCTATGAAATACATCCAAAATGCAAAATCTCGCAAACTAACTTTCAAACAGAGAAAGCATGGATTAGAAAAGAAAATTTCTGAATTTTGTAAGAAGTCTGGAGCAAAGGCTTGCTTTATTGTGTATGATGGTGATCATAATAATGTTGAACCAACGACATGGCCAGAAGACCTTACAAGTGTAAACTCCTTGCTTCAAGAGTATCAGAATCAAAAGATTGAGAAAACTCCTGAGATATTTGATGTTAAGGACTACTTTGAAAATAAGATAGAAAAGGTTGAAACAAAGATTAAGAAAGTGCGGAGAGATATCCTCACTAAGATCTACCCAACTTGGCATCCACATTTTAGTAACTTGGATGAGAATCAACTCAGAGACTTCATTGCTACAATAAATGCTAAGATTCAAGCTTGCAATCACAAAATTAGCATGTTGAAAAATATGCAACAAATAGAAACTAGCACCTTGGATATATGTGACATGATTGATTTTTCTGATCTTGGTGATTTTCCTCCTAGTTCACCATCAAACCAACTTAGTGGGCTTGTGGAGAGGAATGGCCAAGTTGTTGATCCTGATTATACAAGTGAGATGGTGGATTTCACCAGTCTTGGTGATTTGCCTTCTAGTTCATCATCAAACCAACTTAGTGGGCTTGTGGAGATGAGTGACCAAGTTGTTAATCCTGATTATATGAGTGAGATTGTGGATTTCACTAGTCTTGGTGATTTGCCTCCAAGTTCATCAGCAAACCAACTTAGTCAACTTGTTGATCTTGATGACTGGATAAATCAATTAGATGATGGTGTTTTGTGCTGGGATTGTCAACCTGATGAAATGGGTCGCGCAAAAATACCTATGAAATACATCCAAAGTGCGAAATCTCGCAAAATAACTTTCAAACAGAGAAAGCATGGATTAGAAAAGAAAATTTCTGAATTTTGTAAGAAGTCTGGAGCAAAGGCTTGCTTTATTGTGTATGATGGTGATCATAATAATATTGAACCTACGACATGGCCAGAAGACCTTACAAGTGTAAACTCCTTGCTTCAAGAGTATCAGAATCAAAAGATTGAGAAAACTCCTGAGATATTTGATGTTAAGGACTACTTTGAAAATAAGATAGAAAAGGTTGAAACAAAGATTAAGAAAGTGCGGAGAGATATCCTCACTAAGATCTACCCAACTTGGCATCCACATTTTAGTAACTTGGATGAGAATCAACTCAGAGACTTCATTGCTACAATAAATGCTAAGATTCAAGCTTGCAATCACAAAATTAGCATGTTGAAAAATATGCAACAAATAGAAACTAGCACCTTGGATATATGTGACATGATTGATTTTTCTGATCTTGGTGATTTTCCTCCTAGTTCACCATCAAACCAACTTAGTGGGCTTGTGGAGAGGAATGGCCAAGTTGTTGATCCTGATTATACAAGTGAGATGGTGGATTTCACCAGTCTTGGTGATTTGCCTCCTAGTTCATCATCAAACCAACTTAGTGGGCTTGTGGAGATGAGTGACCAAGTTGTTAATCCTGATTATATGAGTGAGATTGTGGATTTCACTAGTCTTGGTGATTTGCCTCCAAGTTCATCAGCAAACCAACTTAGTCAACTTGTTGATCTTGATGACTGGATAAATCAATTAGATGATGGTGTTTTGTGCTGGGATTGTCAACCTGGTGAGTTTTTTTGGAAAGATCTTTCTTTTTAA

Protein sequence

>Msa1259440

TLKMGRAKIPMKYIQNAKSRKLTFKQRKHGLEKKISEFCKKSGAKACFIVYDGDHNNVEPTTWPEDLTSVNSLLQEYQNQKIEKTPEIFDVKDYFENKIEKVETKIKKVRRDILTKIYPTWHPHFSNLDENQLRDFIATINAKIQACNHKISMLKNMQQIETSTLDICDMIDFSDLGDFPPSSPSNQLSGLVERNGQVVDPDYTSEMVDFTSLGDLPSSSSSNQLSGLVEMSDQVVNPDYMSEIVDFTSLGDLPPSSSANQLSQLVDLDDWINQLDDGVLCWDCQPDEMGRAKIPMKYIQSAKSRKITFKQRKHGLEKKISEFCKKSGAKACFIVYDGDHNNIEPTTWPEDLTSVNSLLQEYQNQKIEKTPEIFDVKDYFENKIEKVETKIKKVRRDILTKIYPTWHPHFSNLDENQLRDFIATINAKIQACNHKISMLKNMQQIETSTLDICDMIDFSDLGDFPPSSPSNQLSGLVERNGQVVDPDYTSEMVDFTSLGDLPPSSSSNQLSGLVEMSDQVVNPDYMSEIVDFTSLGDLPPSSSANQLSQLVDLDDWINQLDDGVLCWDCQPGEFFWKDLSF*