Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1262050 | XP_003609277.1 | 75.439 | 228 | 36 | 1 | 1 | 208 | 43 | 270 | 1.09e-117 | 345 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1262050 | sp|Q9LT81|C3H39_ARATH | 35.357 | 280 | 105 | 10 | 4 | 208 | 95 | 373 | 6.90e-37 | 135 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa1262050 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1262050 | MtrunA17_Chr4g0063391 | 70.833 | 168 | 29 | 1 | 1 | 148 | 43 | 210 | 1.95e-81 | 242 |
| Msa1262050 | MtrunA17_Chr4g0063371 | 61.290 | 217 | 37 | 3 | 1 | 207 | 51 | 230 | 2.39e-76 | 229 |
| Msa1262050 | MtrunA17_Chr4g0063401 | 49.730 | 185 | 54 | 4 | 1 | 147 | 65 | 248 | 4.66e-50 | 162 |
| Msa1262050 | MtrunA17_Chr4g0063361 | 50.588 | 170 | 59 | 2 | 1 | 145 | 71 | 240 | 6.18e-50 | 162 |
| Msa1262050 | MtrunA17_Chr3g0098251 | 42.771 | 166 | 58 | 5 | 4 | 145 | 24 | 176 | 4.47e-33 | 117 |
| Msa1262050 | MtrunA17_Chr8g0360671 | 36.301 | 146 | 49 | 4 | 35 | 155 | 41 | 167 | 1.78e-19 | 81.6 |
| Msa1262050 | MtrunA17_Chr8g0366501 | 25.430 | 291 | 116 | 8 | 12 | 208 | 91 | 374 | 9.88e-19 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1262050 | AT3G19360.1 | 35.357 | 280 | 105 | 10 | 4 | 208 | 95 | 373 | 7.01e-38 | 135 |
| Msa1262050 | AT3G19360.2 | 35.357 | 280 | 105 | 10 | 4 | 208 | 95 | 373 | 7.01e-38 | 135 |
Find 51 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACCTAGCTTCTGCAAATT+TGG | 0.182814 | 8_2:+64595974 | None:intergenic |
| AATCGTTGGAACTAATAATT+TGG | 0.191122 | 8_2:-64595763 | Msa1262050:CDS |
| ATGAAGATCCTGCACAGTTT+AGG | 0.265678 | 8_2:-64595821 | Msa1262050:CDS |
| CCAAGTATACGCTTCTTCTT+AGG | 0.280007 | 8_2:+64594560 | None:intergenic |
| AGCCAGATCAATCGTATTTA+CGG | 0.289560 | 8_2:-64594527 | Msa1262050:CDS |
| TGAAGATCCTGCACAGTTTA+GGG | 0.304032 | 8_2:-64595820 | Msa1262050:CDS |
| AATTTACAGTTATCTCTATA+TGG | 0.334708 | 8_2:+64595849 | None:intergenic |
| TCAATCGTATTTACGGTGAT+TGG | 0.347052 | 8_2:-64594520 | Msa1262050:CDS |
| CATACCGGATATTGTTCCTT+TGG | 0.350886 | 8_2:-64595669 | Msa1262050:CDS |
| ATTTGTACCAAGTTCAGATT+TGG | 0.372890 | 8_2:-64596061 | Msa1262050:CDS |
| CCTAAGAAGAAGCGTATACT+TGG | 0.373101 | 8_2:-64594560 | Msa1262050:CDS |
| TCAACTGCAGCTGGGAAATC+AGG | 0.376300 | 8_2:-64595936 | Msa1262050:intron |
| AAATCAGAGTTACAAGTTCC+TGG | 0.402537 | 8_2:-64594680 | Msa1262050:intron |
| GGAGTACTCTCTTGATTTCA+AGG | 0.405462 | 8_2:+64595791 | None:intergenic |
| AGACTAAGCTGTGTCGCAAT+TGG | 0.427484 | 8_2:-64595695 | Msa1262050:CDS |
| AGCAAGCAAGGGGCACTTAT+CGG | 0.435970 | 8_2:-64595719 | Msa1262050:CDS |
| AGATTTGGTGCTTGTAGAAA+CGG | 0.437088 | 8_2:-64596046 | Msa1262050:CDS |
| TGCAAGTCAACTTGTGGAAA+AGG | 0.437938 | 8_2:-64594594 | Msa1262050:CDS |
| CAACGAAGATCAACTGCAGC+TGG | 0.445811 | 8_2:-64595945 | Msa1262050:CDS |
| CTAATAATTTGGAAGGCAGT+AGG | 0.449439 | 8_2:-64595752 | Msa1262050:CDS |
| AACTGCAGCTTCAGCTTCAA+TGG | 0.456894 | 8_2:+64594652 | None:intergenic |
| CATTCCAAAGGAACAATATC+CGG | 0.460353 | 8_2:+64595665 | None:intergenic |
| AGCTTCTGCAAATTTGGTGG+TGG | 0.473172 | 8_2:+64595980 | None:intergenic |
| CACCGTAAATACGATTGATC+TGG | 0.481235 | 8_2:+64594525 | None:intergenic |
| CACAAGTTGACTTGCAGGGG+AGG | 0.509364 | 8_2:+64594601 | None:intergenic |
| TGCTCTGATTTGTTTGATTG+AGG | 0.510278 | 8_2:+64596103 | None:intergenic |
| CCTAGCTTCTGCAAATTTGG+TGG | 0.512657 | 8_2:+64595977 | None:intergenic |
| GGGCTGTGAACAAGCAAGCA+AGG | 0.529652 | 8_2:-64595731 | Msa1262050:CDS |
| TGCAGTTGATCTTCGTTGCA+CGG | 0.530704 | 8_2:+64595950 | None:intergenic |
| TAATAATTTGGAAGGCAGTA+GGG | 0.531942 | 8_2:-64595751 | Msa1262050:CDS |
| ACAAGCACCAAATCTGAACT+TGG | 0.532357 | 8_2:+64596054 | None:intergenic |
| GAATCATCCCTAAACTGTGC+AGG | 0.539981 | 8_2:+64595813 | None:intergenic |
| CTCCCCTGCAAGTCAACTTG+TGG | 0.543090 | 8_2:-64594600 | Msa1262050:CDS |
| GTTGGAACTAATAATTTGGA+AGG | 0.547263 | 8_2:-64595759 | Msa1262050:CDS |
| AAGTTGACTTGCAGGGGAGG+TGG | 0.548779 | 8_2:+64594604 | None:intergenic |
| GGCTGTGAACAAGCAAGCAA+GGG | 0.555542 | 8_2:-64595730 | Msa1262050:CDS |
| TTTCCACAAGTTGACTTGCA+GGG | 0.560920 | 8_2:+64594597 | None:intergenic |
| TGTCGCAATTGGAAGCATAC+CGG | 0.563682 | 8_2:-64595684 | Msa1262050:CDS |
| TCAGCTTCAATGGCTCGACC+AGG | 0.567766 | 8_2:+64594662 | None:intergenic |
| TGATTTGTTTGATTGAGGCA+AGG | 0.569543 | 8_2:+64596108 | None:intergenic |
| ATTAGTTCCAACGATTATTG+CGG | 0.587078 | 8_2:+64595770 | None:intergenic |
| TTCCACAAGTTGACTTGCAG+GGG | 0.588906 | 8_2:+64594598 | None:intergenic |
| AACGAAGATCAACTGCAGCT+GGG | 0.593604 | 8_2:-64595944 | Msa1262050:CDS |
| ACTGTGCAGGATCTTCATGA+AGG | 0.599205 | 8_2:+64595826 | None:intergenic |
| CTCATGGAGCTGAAAAGACA+AGG | 0.599616 | 8_2:-64596006 | Msa1262050:CDS |
| CCACCAAATTTGCAGAAGCT+AGG | 0.604649 | 8_2:-64595977 | Msa1262050:CDS |
| AAAGAGACAGTTCATTCCAA+AGG | 0.613697 | 8_2:+64595653 | None:intergenic |
| GAGTACTCCGCAATAATCGT+TGG | 0.615437 | 8_2:-64595777 | Msa1262050:CDS |
| CTAAGAAGAAGCGTATACTT+GGG | 0.628540 | 8_2:-64594559 | Msa1262050:CDS |
| CCAAATTTGCAGAAGCTAGG+TGG | 0.641093 | 8_2:-64595974 | Msa1262050:CDS |
| GCTGTGAACAAGCAAGCAAG+GGG | 0.667598 | 8_2:-64595729 | Msa1262050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAGTTTTTTTTTTAATATA+AGG | + | chr8_2:64595789-64595808 | None:intergenic | 10.0% |
| !!! | CAAGTTTTTTTTTTAATATA+AGG | + | chr8_2:64595789-64595808 | None:intergenic | 10.0% |
| !! | ATAATACAAATATAAAACTG+TGG | + | chr8_2:64595628-64595647 | None:intergenic | 15.0% |
| !! | ATAATACAAATATAAAACTG+TGG | + | chr8_2:64595628-64595647 | None:intergenic | 15.0% |
| !! | GAAGATAAAAAATCATACAA+AGG | - | chr8_2:64594709-64594728 | Msa1262050:intron | 20.0% |
| !! | AATTTACAGTTATCTCTATA+TGG | + | chr8_2:64594774-64594793 | None:intergenic | 20.0% |
| !!! | CAATAACTCATTTTGATTAT+TGG | - | chr8_2:64595010-64595029 | Msa1262050:intron | 20.0% |
| !!! | ATCTTTTGCAAAGTTTTAAA+TGG | - | chr8_2:64595652-64595671 | Msa1262050:CDS | 20.0% |
| !!! | TTTTTTTTAATATAAGGCCT+TGG | + | chr8_2:64595783-64595802 | None:intergenic | 20.0% |
| !!! | TTATAACAATTGCAACTTTT+TGG | - | chr8_2:64595872-64595891 | Msa1262050:intron | 20.0% |
| !! | GAAGATAAAAAATCATACAA+AGG | - | chr8_2:64594709-64594728 | Msa1262050:intron | 20.0% |
| !! | AATTTACAGTTATCTCTATA+TGG | + | chr8_2:64594774-64594793 | None:intergenic | 20.0% |
| !!! | CAATAACTCATTTTGATTAT+TGG | - | chr8_2:64595010-64595029 | Msa1262050:intron | 20.0% |
| !!! | ATCTTTTGCAAAGTTTTAAA+TGG | - | chr8_2:64595652-64595671 | Msa1262050:CDS | 20.0% |
| !!! | TTTTTTTTAATATAAGGCCT+TGG | + | chr8_2:64595783-64595802 | None:intergenic | 20.0% |
| !!! | TTATAACAATTGCAACTTTT+TGG | - | chr8_2:64595872-64595891 | Msa1262050:intron | 20.0% |
| ! | AATCGTTGGAACTAATAATT+TGG | - | chr8_2:64594857-64594876 | Msa1262050:intron | 25.0% |
| !!! | CTCATTTTGATTATTGGTTT+TGG | - | chr8_2:64595016-64595035 | Msa1262050:intron | 25.0% |
| !!! | TGTTTCATGTTTGATTTGAA+TGG | - | chr8_2:64595202-64595221 | Msa1262050:intron | 25.0% |
| ! | AAAAATCTGGTATACAAACA+TGG | + | chr8_2:64595374-64595393 | None:intergenic | 25.0% |
| ! | TTGTACTAAATAACGTTTCA+TGG | - | chr8_2:64595502-64595521 | Msa1262050:intron | 25.0% |
| ! | TGTACTAAATAACGTTTCAT+GGG | - | chr8_2:64595503-64595522 | Msa1262050:intron | 25.0% |
| !! | TACACAGTTTTACATTTGTT+AGG | - | chr8_2:64595590-64595609 | Msa1262050:intron | 25.0% |
| ! | AATCGTTGGAACTAATAATT+TGG | - | chr8_2:64594857-64594876 | Msa1262050:intron | 25.0% |
| !!! | CTCATTTTGATTATTGGTTT+TGG | - | chr8_2:64595016-64595035 | Msa1262050:intron | 25.0% |
| !!! | TGTTTCATGTTTGATTTGAA+TGG | - | chr8_2:64595202-64595221 | Msa1262050:intron | 25.0% |
| ! | AAAAATCTGGTATACAAACA+TGG | + | chr8_2:64595374-64595393 | None:intergenic | 25.0% |
| ! | TTGTACTAAATAACGTTTCA+TGG | - | chr8_2:64595502-64595521 | Msa1262050:intron | 25.0% |
| ! | TGTACTAAATAACGTTTCAT+GGG | - | chr8_2:64595503-64595522 | Msa1262050:intron | 25.0% |
| !! | TACACAGTTTTACATTTGTT+AGG | - | chr8_2:64595590-64595609 | Msa1262050:intron | 25.0% |
| ATTTGTACCAAGTTCAGATT+TGG | - | chr8_2:64594559-64594578 | Msa1262050:CDS | 30.0% | |
| AAAAATTGCAACTTTGCTCA+TGG | - | chr8_2:64594598-64594617 | Msa1262050:CDS | 30.0% | |
| ! | TGTGCAATAAGTATTGCAAT+GGG | - | chr8_2:64594739-64594758 | Msa1262050:intron | 30.0% |
| ATTAGTTCCAACGATTATTG+CGG | + | chr8_2:64594853-64594872 | None:intergenic | 30.0% | |
| GTTGGAACTAATAATTTGGA+AGG | - | chr8_2:64594861-64594880 | Msa1262050:intron | 30.0% | |
| TAATAATTTGGAAGGCAGTA+GGG | - | chr8_2:64594869-64594888 | Msa1262050:intron | 30.0% | |
| ! | TCATTTTCCATCATAACCTT+AGG | + | chr8_2:64595282-64595301 | None:intergenic | 30.0% |
| ! | ATGATTCCATCCTTGTTTAT+AGG | - | chr8_2:64595298-64595317 | Msa1262050:intron | 30.0% |
| AAGTTATCATAAGCAAAAGG+CGG | + | chr8_2:64595413-64595432 | None:intergenic | 30.0% | |
| GCAAAGTTATCATAAGCAAA+AGG | + | chr8_2:64595416-64595435 | None:intergenic | 30.0% | |
| GTACTAAATAACGTTTCATG+GGG | - | chr8_2:64595504-64595523 | Msa1262050:intron | 30.0% | |
| ! | TGTGTAGTGTTGTTAAATAG+CGG | + | chr8_2:64595576-64595595 | None:intergenic | 30.0% |
| CATATTTGACCGCAATATTA+AGG | + | chr8_2:64595693-64595712 | None:intergenic | 30.0% | |
| CTTAATATTGCGGTCAAATA+TGG | - | chr8_2:64595691-64595710 | Msa1262050:CDS | 30.0% | |
| ! | AGCGATTGTTGAATTTTCTA+TGG | + | chr8_2:64595995-64596014 | None:intergenic | 30.0% |
| ATTTGTACCAAGTTCAGATT+TGG | - | chr8_2:64594559-64594578 | Msa1262050:CDS | 30.0% | |
| AAAAATTGCAACTTTGCTCA+TGG | - | chr8_2:64594598-64594617 | Msa1262050:CDS | 30.0% | |
| ! | TGTGCAATAAGTATTGCAAT+GGG | - | chr8_2:64594739-64594758 | Msa1262050:intron | 30.0% |
| ATTAGTTCCAACGATTATTG+CGG | + | chr8_2:64594853-64594872 | None:intergenic | 30.0% | |
| GTTGGAACTAATAATTTGGA+AGG | - | chr8_2:64594861-64594880 | Msa1262050:intron | 30.0% | |
| TAATAATTTGGAAGGCAGTA+GGG | - | chr8_2:64594869-64594888 | Msa1262050:intron | 30.0% | |
| ! | TCATTTTCCATCATAACCTT+AGG | + | chr8_2:64595282-64595301 | None:intergenic | 30.0% |
| ! | ATGATTCCATCCTTGTTTAT+AGG | - | chr8_2:64595298-64595317 | Msa1262050:intron | 30.0% |
| AAGTTATCATAAGCAAAAGG+CGG | + | chr8_2:64595413-64595432 | None:intergenic | 30.0% | |
| GCAAAGTTATCATAAGCAAA+AGG | + | chr8_2:64595416-64595435 | None:intergenic | 30.0% | |
| GTACTAAATAACGTTTCATG+GGG | - | chr8_2:64595504-64595523 | Msa1262050:intron | 30.0% | |
| ! | TGTGTAGTGTTGTTAAATAG+CGG | + | chr8_2:64595576-64595595 | None:intergenic | 30.0% |
| CATATTTGACCGCAATATTA+AGG | + | chr8_2:64595693-64595712 | None:intergenic | 30.0% | |
| CTTAATATTGCGGTCAAATA+TGG | - | chr8_2:64595691-64595710 | Msa1262050:CDS | 30.0% | |
| ! | AGCGATTGTTGAATTTTCTA+TGG | + | chr8_2:64595995-64596014 | None:intergenic | 30.0% |
| !! | TGATTTGTTTGATTGAGGCA+AGG | + | chr8_2:64594515-64594534 | None:intergenic | 35.0% |
| !! | TGCTCTGATTTGTTTGATTG+AGG | + | chr8_2:64594520-64594539 | None:intergenic | 35.0% |
| !! | AGATTTGGTGCTTGTAGAAA+CGG | - | chr8_2:64594574-64594593 | Msa1262050:CDS | 35.0% |
| ! | CTGTGCAATAAGTATTGCAA+TGG | - | chr8_2:64594738-64594757 | Msa1262050:intron | 35.0% |
| ! | GTGCAATAAGTATTGCAATG+GGG | - | chr8_2:64594740-64594759 | Msa1262050:intron | 35.0% |
| CTAATAATTTGGAAGGCAGT+AGG | - | chr8_2:64594868-64594887 | Msa1262050:intron | 35.0% | |
| CATTCCAAAGGAACAATATC+CGG | + | chr8_2:64594958-64594977 | None:intergenic | 35.0% | |
| AAAGAGACAGTTCATTCCAA+AGG | + | chr8_2:64594970-64594989 | None:intergenic | 35.0% | |
| ! | TTTTTGCAAGACAAGGCAAA+GGG | + | chr8_2:64595251-64595270 | None:intergenic | 35.0% |
| ! | ATTTTTGCAAGACAAGGCAA+AGG | + | chr8_2:64595252-64595271 | None:intergenic | 35.0% |
| ! | AGGAACATTTTTGCAAGACA+AGG | + | chr8_2:64595258-64595277 | None:intergenic | 35.0% |
| TGCAAAAATGTTCCTTCCTA+AGG | - | chr8_2:64595263-64595282 | Msa1262050:intron | 35.0% | |
| TTTCCATCATAACCTTAGGA+AGG | + | chr8_2:64595278-64595297 | None:intergenic | 35.0% | |
| ATCGTAGTTGACGAAAAATC+TGG | + | chr8_2:64595387-64595406 | None:intergenic | 35.0% | |
| AGGAGTCAGAACAATATACA+TGG | + | chr8_2:64595901-64595920 | None:intergenic | 35.0% | |
| AAATCAGAGTTACAAGTTCC+TGG | - | chr8_2:64595940-64595959 | Msa1262050:CDS | 35.0% | |
| ! | CTAAGAAGAAGCGTATACTT+GGG | - | chr8_2:64596061-64596080 | Msa1262050:CDS | 35.0% |
| AGCCAGATCAATCGTATTTA+CGG | - | chr8_2:64596093-64596112 | Msa1262050:CDS | 35.0% | |
| TCAATCGTATTTACGGTGAT+TGG | - | chr8_2:64596100-64596119 | Msa1262050:CDS | 35.0% | |
| !! | TGATTTGTTTGATTGAGGCA+AGG | + | chr8_2:64594515-64594534 | None:intergenic | 35.0% |
| !! | TGCTCTGATTTGTTTGATTG+AGG | + | chr8_2:64594520-64594539 | None:intergenic | 35.0% |
| !! | AGATTTGGTGCTTGTAGAAA+CGG | - | chr8_2:64594574-64594593 | Msa1262050:CDS | 35.0% |
| ! | CTGTGCAATAAGTATTGCAA+TGG | - | chr8_2:64594738-64594757 | Msa1262050:intron | 35.0% |
| ! | GTGCAATAAGTATTGCAATG+GGG | - | chr8_2:64594740-64594759 | Msa1262050:intron | 35.0% |
| CTAATAATTTGGAAGGCAGT+AGG | - | chr8_2:64594868-64594887 | Msa1262050:intron | 35.0% | |
| CATTCCAAAGGAACAATATC+CGG | + | chr8_2:64594958-64594977 | None:intergenic | 35.0% | |
| AAAGAGACAGTTCATTCCAA+AGG | + | chr8_2:64594970-64594989 | None:intergenic | 35.0% | |
| ! | TTTTTGCAAGACAAGGCAAA+GGG | + | chr8_2:64595251-64595270 | None:intergenic | 35.0% |
| ! | ATTTTTGCAAGACAAGGCAA+AGG | + | chr8_2:64595252-64595271 | None:intergenic | 35.0% |
| ! | AGGAACATTTTTGCAAGACA+AGG | + | chr8_2:64595258-64595277 | None:intergenic | 35.0% |
| TGCAAAAATGTTCCTTCCTA+AGG | - | chr8_2:64595263-64595282 | Msa1262050:intron | 35.0% | |
| TTTCCATCATAACCTTAGGA+AGG | + | chr8_2:64595278-64595297 | None:intergenic | 35.0% | |
| ATCGTAGTTGACGAAAAATC+TGG | + | chr8_2:64595387-64595406 | None:intergenic | 35.0% | |
| AGGAGTCAGAACAATATACA+TGG | + | chr8_2:64595901-64595920 | None:intergenic | 35.0% | |
| AAATCAGAGTTACAAGTTCC+TGG | - | chr8_2:64595940-64595959 | Msa1262050:CDS | 35.0% | |
| ! | CTAAGAAGAAGCGTATACTT+GGG | - | chr8_2:64596061-64596080 | Msa1262050:CDS | 35.0% |
| AGCCAGATCAATCGTATTTA+CGG | - | chr8_2:64596093-64596112 | Msa1262050:CDS | 35.0% | |
| TCAATCGTATTTACGGTGAT+TGG | - | chr8_2:64596100-64596119 | Msa1262050:CDS | 35.0% | |
| ACAAGCACCAAATCTGAACT+TGG | + | chr8_2:64594569-64594588 | None:intergenic | 40.0% | |
| ! | CAATAAGTATTGCAATGGGG+AGG | - | chr8_2:64594743-64594762 | Msa1262050:intron | 40.0% |
| ATGAAGATCCTGCACAGTTT+AGG | - | chr8_2:64594799-64594818 | Msa1262050:intron | 40.0% | |
| TGAAGATCCTGCACAGTTTA+GGG | - | chr8_2:64594800-64594819 | Msa1262050:intron | 40.0% | |
| ! | GGAGTACTCTCTTGATTTCA+AGG | + | chr8_2:64594832-64594851 | None:intergenic | 40.0% |
| CATACCGGATATTGTTCCTT+TGG | - | chr8_2:64594951-64594970 | Msa1262050:intron | 40.0% | |
| ATGGAAAATGCTCCTCCTAT+TGG | - | chr8_2:64595221-64595240 | Msa1262050:intron | 40.0% | |
| AAGGCAAAGGGAAAACCAAT+AGG | + | chr8_2:64595239-64595258 | None:intergenic | 40.0% | |
| GTTCCTTCCTAAGGTTATGA+TGG | - | chr8_2:64595272-64595291 | Msa1262050:intron | 40.0% | |
| TGATAACTTTGCTCTAGCTG+AGG | - | chr8_2:64595424-64595443 | Msa1262050:intron | 40.0% | |
| TTCATGGGGTAGTAGTGATA+TGG | - | chr8_2:64595518-64595537 | Msa1262050:intron | 40.0% | |
| TTGTTAAATAGCGGCTGCAT+CGG | + | chr8_2:64595567-64595586 | None:intergenic | 40.0% | |
| CAATATTAAGGATCGCGACA+TGG | + | chr8_2:64595681-64595700 | None:intergenic | 40.0% | |
| TGTCGCGATCCTTAATATTG+CGG | - | chr8_2:64595681-64595700 | Msa1262050:CDS | 40.0% | |
| TGTTCTGACTCCTGAAGTAT+TGG | - | chr8_2:64595908-64595927 | Msa1262050:intron | 40.0% | |
| TGCAAGACAACCAATACTTC+AGG | + | chr8_2:64595921-64595940 | None:intergenic | 40.0% | |
| !! | TTTCCACAAGTTGACTTGCA+GGG | + | chr8_2:64596026-64596045 | None:intergenic | 40.0% |
| !!! | TTTTCCACAAGTTGACTTGC+AGG | + | chr8_2:64596027-64596046 | None:intergenic | 40.0% |
| TGCAAGTCAACTTGTGGAAA+AGG | - | chr8_2:64596026-64596045 | Msa1262050:CDS | 40.0% | |
| CCAAGTATACGCTTCTTCTT+AGG | + | chr8_2:64596063-64596082 | None:intergenic | 40.0% | |
| ! | CCTAAGAAGAAGCGTATACT+TGG | - | chr8_2:64596060-64596079 | Msa1262050:CDS | 40.0% |
| CACCGTAAATACGATTGATC+TGG | + | chr8_2:64596098-64596117 | None:intergenic | 40.0% | |
| ACAAGCACCAAATCTGAACT+TGG | + | chr8_2:64594569-64594588 | None:intergenic | 40.0% | |
| ! | CAATAAGTATTGCAATGGGG+AGG | - | chr8_2:64594743-64594762 | Msa1262050:intron | 40.0% |
| ATGAAGATCCTGCACAGTTT+AGG | - | chr8_2:64594799-64594818 | Msa1262050:intron | 40.0% | |
| TGAAGATCCTGCACAGTTTA+GGG | - | chr8_2:64594800-64594819 | Msa1262050:intron | 40.0% | |
| ! | GGAGTACTCTCTTGATTTCA+AGG | + | chr8_2:64594832-64594851 | None:intergenic | 40.0% |
| CATACCGGATATTGTTCCTT+TGG | - | chr8_2:64594951-64594970 | Msa1262050:intron | 40.0% | |
| ATGGAAAATGCTCCTCCTAT+TGG | - | chr8_2:64595221-64595240 | Msa1262050:intron | 40.0% | |
| AAGGCAAAGGGAAAACCAAT+AGG | + | chr8_2:64595239-64595258 | None:intergenic | 40.0% | |
| GTTCCTTCCTAAGGTTATGA+TGG | - | chr8_2:64595272-64595291 | Msa1262050:intron | 40.0% | |
| TGATAACTTTGCTCTAGCTG+AGG | - | chr8_2:64595424-64595443 | Msa1262050:intron | 40.0% | |
| TTCATGGGGTAGTAGTGATA+TGG | - | chr8_2:64595518-64595537 | Msa1262050:intron | 40.0% | |
| TTGTTAAATAGCGGCTGCAT+CGG | + | chr8_2:64595567-64595586 | None:intergenic | 40.0% | |
| CAATATTAAGGATCGCGACA+TGG | + | chr8_2:64595681-64595700 | None:intergenic | 40.0% | |
| TGTCGCGATCCTTAATATTG+CGG | - | chr8_2:64595681-64595700 | Msa1262050:CDS | 40.0% | |
| TGTTCTGACTCCTGAAGTAT+TGG | - | chr8_2:64595908-64595927 | Msa1262050:intron | 40.0% | |
| TGCAAGACAACCAATACTTC+AGG | + | chr8_2:64595921-64595940 | None:intergenic | 40.0% | |
| !! | TTTCCACAAGTTGACTTGCA+GGG | + | chr8_2:64596026-64596045 | None:intergenic | 40.0% |
| !!! | TTTTCCACAAGTTGACTTGC+AGG | + | chr8_2:64596027-64596046 | None:intergenic | 40.0% |
| TGCAAGTCAACTTGTGGAAA+AGG | - | chr8_2:64596026-64596045 | Msa1262050:CDS | 40.0% | |
| CCAAGTATACGCTTCTTCTT+AGG | + | chr8_2:64596063-64596082 | None:intergenic | 40.0% | |
| ! | CCTAAGAAGAAGCGTATACT+TGG | - | chr8_2:64596060-64596079 | Msa1262050:CDS | 40.0% |
| CACCGTAAATACGATTGATC+TGG | + | chr8_2:64596098-64596117 | None:intergenic | 40.0% | |
| CTCATGGAGCTGAAAAGACA+AGG | - | chr8_2:64594614-64594633 | Msa1262050:CDS | 45.0% | |
| ! | AGCTTCTGCAAATTTGGTGG+TGG | + | chr8_2:64594643-64594662 | None:intergenic | 45.0% |
| CCTAGCTTCTGCAAATTTGG+TGG | + | chr8_2:64594646-64594665 | None:intergenic | 45.0% | |
| CCACCAAATTTGCAGAAGCT+AGG | - | chr8_2:64594643-64594662 | Msa1262050:CDS | 45.0% | |
| CCACCTAGCTTCTGCAAATT+TGG | + | chr8_2:64594649-64594668 | None:intergenic | 45.0% | |
| CCAAATTTGCAGAAGCTAGG+TGG | - | chr8_2:64594646-64594665 | Msa1262050:CDS | 45.0% | |
| TGCAGTTGATCTTCGTTGCA+CGG | + | chr8_2:64594673-64594692 | None:intergenic | 45.0% | |
| AACGAAGATCAACTGCAGCT+GGG | - | chr8_2:64594676-64594695 | Msa1262050:CDS | 45.0% | |
| ACTGTGCAGGATCTTCATGA+AGG | + | chr8_2:64594797-64594816 | None:intergenic | 45.0% | |
| GAATCATCCCTAAACTGTGC+AGG | + | chr8_2:64594810-64594829 | None:intergenic | 45.0% | |
| GAGTACTCCGCAATAATCGT+TGG | - | chr8_2:64594843-64594862 | Msa1262050:intron | 45.0% | |
| AGACTAAGCTGTGTCGCAAT+TGG | - | chr8_2:64594925-64594944 | Msa1262050:intron | 45.0% | |
| ! | TGTCGCAATTGGAAGCATAC+CGG | - | chr8_2:64594936-64594955 | Msa1262050:intron | 45.0% |
| GCAAAGGGAAAACCAATAGG+AGG | + | chr8_2:64595236-64595255 | None:intergenic | 45.0% | |
| GCTCTGCCTATAAACAAGGA+TGG | + | chr8_2:64595307-64595326 | None:intergenic | 45.0% | |
| ! | TCCTTGTTTATAGGCAGAGC+AGG | - | chr8_2:64595307-64595326 | Msa1262050:intron | 45.0% |
| ACCTGCTCTGCCTATAAACA+AGG | + | chr8_2:64595311-64595330 | None:intergenic | 45.0% | |
| GGTATACAAACATGGAGCTG+CGG | + | chr8_2:64595366-64595385 | None:intergenic | 45.0% | |
| !! | CATCGGTGCTATTGCATAGT+GGG | + | chr8_2:64595550-64595569 | None:intergenic | 45.0% |
| TGCCTTCATCATCACAAGTG+CGG | + | chr8_2:64595726-64595745 | None:intergenic | 45.0% | |
| AACTGCAGCTTCAGCTTCAA+TGG | + | chr8_2:64595971-64595990 | None:intergenic | 45.0% | |
| !! | TTCCACAAGTTGACTTGCAG+GGG | + | chr8_2:64596025-64596044 | None:intergenic | 45.0% |
| CTCATGGAGCTGAAAAGACA+AGG | - | chr8_2:64594614-64594633 | Msa1262050:CDS | 45.0% | |
| ! | AGCTTCTGCAAATTTGGTGG+TGG | + | chr8_2:64594643-64594662 | None:intergenic | 45.0% |
| CCTAGCTTCTGCAAATTTGG+TGG | + | chr8_2:64594646-64594665 | None:intergenic | 45.0% | |
| CCACCAAATTTGCAGAAGCT+AGG | - | chr8_2:64594643-64594662 | Msa1262050:CDS | 45.0% | |
| CCACCTAGCTTCTGCAAATT+TGG | + | chr8_2:64594649-64594668 | None:intergenic | 45.0% | |
| CCAAATTTGCAGAAGCTAGG+TGG | - | chr8_2:64594646-64594665 | Msa1262050:CDS | 45.0% | |
| TGCAGTTGATCTTCGTTGCA+CGG | + | chr8_2:64594673-64594692 | None:intergenic | 45.0% | |
| AACGAAGATCAACTGCAGCT+GGG | - | chr8_2:64594676-64594695 | Msa1262050:CDS | 45.0% | |
| ACTGTGCAGGATCTTCATGA+AGG | + | chr8_2:64594797-64594816 | None:intergenic | 45.0% | |
| GAATCATCCCTAAACTGTGC+AGG | + | chr8_2:64594810-64594829 | None:intergenic | 45.0% | |
| GAGTACTCCGCAATAATCGT+TGG | - | chr8_2:64594843-64594862 | Msa1262050:intron | 45.0% | |
| AGACTAAGCTGTGTCGCAAT+TGG | - | chr8_2:64594925-64594944 | Msa1262050:intron | 45.0% | |
| ! | TGTCGCAATTGGAAGCATAC+CGG | - | chr8_2:64594936-64594955 | Msa1262050:intron | 45.0% |
| GCAAAGGGAAAACCAATAGG+AGG | + | chr8_2:64595236-64595255 | None:intergenic | 45.0% | |
| GCTCTGCCTATAAACAAGGA+TGG | + | chr8_2:64595307-64595326 | None:intergenic | 45.0% | |
| ! | TCCTTGTTTATAGGCAGAGC+AGG | - | chr8_2:64595307-64595326 | Msa1262050:intron | 45.0% |
| ACCTGCTCTGCCTATAAACA+AGG | + | chr8_2:64595311-64595330 | None:intergenic | 45.0% | |
| GGTATACAAACATGGAGCTG+CGG | + | chr8_2:64595366-64595385 | None:intergenic | 45.0% | |
| !! | CATCGGTGCTATTGCATAGT+GGG | + | chr8_2:64595550-64595569 | None:intergenic | 45.0% |
| TGCCTTCATCATCACAAGTG+CGG | + | chr8_2:64595726-64595745 | None:intergenic | 45.0% | |
| AACTGCAGCTTCAGCTTCAA+TGG | + | chr8_2:64595971-64595990 | None:intergenic | 45.0% | |
| !! | TTCCACAAGTTGACTTGCAG+GGG | + | chr8_2:64596025-64596044 | None:intergenic | 45.0% |
| CAACGAAGATCAACTGCAGC+TGG | - | chr8_2:64594675-64594694 | Msa1262050:CDS | 50.0% | |
| TCAACTGCAGCTGGGAAATC+AGG | - | chr8_2:64594684-64594703 | Msa1262050:intron | 50.0% | |
| GGCTGTGAACAAGCAAGCAA+GGG | - | chr8_2:64594890-64594909 | Msa1262050:intron | 50.0% | |
| GCTGTGAACAAGCAAGCAAG+GGG | - | chr8_2:64594891-64594910 | Msa1262050:intron | 50.0% | |
| !! | AGCAAGCAAGGGGCACTTAT+CGG | - | chr8_2:64594901-64594920 | Msa1262050:intron | 50.0% |
| GCGTATGGCAGAAACAAGTC+GGG | + | chr8_2:64595344-64595363 | None:intergenic | 50.0% | |
| GGCGTATGGCAGAAACAAGT+CGG | + | chr8_2:64595345-64595364 | None:intergenic | 50.0% | |
| !! | GCATCGGTGCTATTGCATAG+TGG | + | chr8_2:64595551-64595570 | None:intergenic | 50.0% |
| ! | AGCCGCACTTGTGATGATGA+AGG | - | chr8_2:64595721-64595740 | Msa1262050:CDS | 50.0% |
| CAACGAAGATCAACTGCAGC+TGG | - | chr8_2:64594675-64594694 | Msa1262050:CDS | 50.0% | |
| TCAACTGCAGCTGGGAAATC+AGG | - | chr8_2:64594684-64594703 | Msa1262050:intron | 50.0% | |
| GGCTGTGAACAAGCAAGCAA+GGG | - | chr8_2:64594890-64594909 | Msa1262050:intron | 50.0% | |
| GCTGTGAACAAGCAAGCAAG+GGG | - | chr8_2:64594891-64594910 | Msa1262050:intron | 50.0% | |
| !! | AGCAAGCAAGGGGCACTTAT+CGG | - | chr8_2:64594901-64594920 | Msa1262050:intron | 50.0% |
| GCGTATGGCAGAAACAAGTC+GGG | + | chr8_2:64595344-64595363 | None:intergenic | 50.0% | |
| GGCGTATGGCAGAAACAAGT+CGG | + | chr8_2:64595345-64595364 | None:intergenic | 50.0% | |
| !! | GCATCGGTGCTATTGCATAG+TGG | + | chr8_2:64595551-64595570 | None:intergenic | 50.0% |
| ! | AGCCGCACTTGTGATGATGA+AGG | - | chr8_2:64595721-64595740 | Msa1262050:CDS | 50.0% |
| GGGCTGTGAACAAGCAAGCA+AGG | - | chr8_2:64594889-64594908 | Msa1262050:intron | 55.0% | |
| AAACATGGAGCTGCGGCGTA+TGG | + | chr8_2:64595359-64595378 | None:intergenic | 55.0% | |
| GTACATCTCAGCCACAGTCG+TGG | - | chr8_2:64595756-64595775 | Msa1262050:CDS | 55.0% | |
| TCAGCTTCAATGGCTCGACC+AGG | + | chr8_2:64595961-64595980 | None:intergenic | 55.0% | |
| !! | AAGTTGACTTGCAGGGGAGG+TGG | + | chr8_2:64596019-64596038 | None:intergenic | 55.0% |
| !! | CACAAGTTGACTTGCAGGGG+AGG | + | chr8_2:64596022-64596041 | None:intergenic | 55.0% |
| CTCCCCTGCAAGTCAACTTG+TGG | - | chr8_2:64596020-64596039 | Msa1262050:CDS | 55.0% | |
| GGGCTGTGAACAAGCAAGCA+AGG | - | chr8_2:64594889-64594908 | Msa1262050:intron | 55.0% | |
| AAACATGGAGCTGCGGCGTA+TGG | + | chr8_2:64595359-64595378 | None:intergenic | 55.0% | |
| GTACATCTCAGCCACAGTCG+TGG | - | chr8_2:64595756-64595775 | Msa1262050:CDS | 55.0% | |
| TCAGCTTCAATGGCTCGACC+AGG | + | chr8_2:64595961-64595980 | None:intergenic | 55.0% | |
| !! | AAGTTGACTTGCAGGGGAGG+TGG | + | chr8_2:64596019-64596038 | None:intergenic | 55.0% |
| !! | CACAAGTTGACTTGCAGGGG+AGG | + | chr8_2:64596022-64596041 | None:intergenic | 55.0% |
| CTCCCCTGCAAGTCAACTTG+TGG | - | chr8_2:64596020-64596039 | Msa1262050:CDS | 55.0% | |
| TCAGCCACAGTCGTGGTCCA+AGG | - | chr8_2:64595763-64595782 | Msa1262050:CDS | 60.0% | |
| AAGGCCTTGGACCACGACTG+TGG | + | chr8_2:64595770-64595789 | None:intergenic | 60.0% | |
| TCAGCCACAGTCGTGGTCCA+AGG | - | chr8_2:64595763-64595782 | Msa1262050:CDS | 60.0% | |
| AAGGCCTTGGACCACGACTG+TGG | + | chr8_2:64595770-64595789 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 64594508 | 64596134 | 64594508 | ID=Msa1262050;Name=Msa1262050 |
| chr8_2 | mRNA | 64594508 | 64596134 | 64594508 | ID=Msa1262050-mRNA-1;Parent=Msa1262050;Name=Msa1262050-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0|1|0.5|0.66|3|0|208 |
| chr8_2 | exon | 64595937 | 64596134 | 64595937 | ID=Msa1262050-mRNA-1:exon:20913;Parent=Msa1262050-mRNA-1 |
| chr8_2 | exon | 64595637 | 64595877 | 64595637 | ID=Msa1262050-mRNA-1:exon:20912;Parent=Msa1262050-mRNA-1 |
| chr8_2 | exon | 64594508 | 64594695 | 64594508 | ID=Msa1262050-mRNA-1:exon:20911;Parent=Msa1262050-mRNA-1 |
| chr8_2 | CDS | 64595937 | 64596134 | 64595937 | ID=Msa1262050-mRNA-1:cds;Parent=Msa1262050-mRNA-1 |
| chr8_2 | CDS | 64595637 | 64595877 | 64595637 | ID=Msa1262050-mRNA-1:cds;Parent=Msa1262050-mRNA-1 |
| chr8_2 | CDS | 64594508 | 64594695 | 64594508 | ID=Msa1262050-mRNA-1:cds;Parent=Msa1262050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
