AlfalfaGEDB | Msa1262060

M. sativa cultivar zhongmu-4 / Msa1262060

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0006417 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010629 GO:0017148 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031329 GO:0031331 GO:0032268 GO:0032269 GO:0034248 GO:0034249 GO:0043487 GO:0043488 GO:0044424 GO:0044444 GO:0044464 GO:0045935 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050779 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051248 GO:0051252 GO:0051254 GO:0060255 GO:0061013 GO:0061014 GO:0061157 GO:0061158 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903311 GO:1903313 GO:1903506 GO:2000112 GO:2000113 GO:2001141
PFAM: PF00642.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1262060	XP_003609272.1	84.082	245	16	2	1	237	1	230	2.06e-133	385

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1262060	sp\|Q9LT81\|C3H39_ARATH	35.017	297	100	7	31	238	81	373	6.02e-44	155

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1262060	G7JVB3	84.082	245	16	2	1	237	1	230	9.85e-134	385

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TFs/TRs:

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Gene ID	Type	Classification
Msa1262060	TF	C3H

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1262060	MtrunA17_Chr4g0063371	84.082	245	16	2	1	237	1	230	1.90e-137	385
Msa1262060	MtrunA17_Chr4g0063391	66.667	210	30	2	1	170	1	210	2.73e-93	273
Msa1262060	MtrunA17_Chr4g0063361	44.583	240	60	4	1	167	1	240	6.29e-63	197
Msa1262060	MtrunA17_Chr4g0063401	44.980	249	56	6	1	169	1	248	6.17e-58	184
Msa1262060	MtrunA17_Chr3g0098251	41.477	176	50	5	31	167	15	176	2.36e-32	117
Msa1262060	MtrunA17_Chr8g0366501	36.364	110	44	1	54	137	91	200	6.53e-17	79.0
Msa1262060	MtrunA17_Chr8g0366501	34.454	119	54	4	142	238	258	374	3.11e-11	62.4
Msa1262060	MtrunA17_Chr8g0360671	58.065	62	18	1	77	130	41	102	6.88e-17	75.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1262060	AT3G19360.1	35.017	297	100	7	31	238	81	373	6.12e-45	155
Msa1262060	AT3G19360.2	35.017	297	100	7	31	238	81	373	6.12e-45	155
Msa1262060	AT2G35430.1	32.308	195	106	8	55	238	71	250	2.02e-19	84.7
Msa1262060	AT1G32360.1	33.913	115	45	2	54	137	90	204	8.50e-15	73.2

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Find 61 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGACAGTTCTTTCCAA+AGG	0.613225	8_2:+64610903	None:intergenic
AAATCAGAGTTACAAGTTCC+TGG	0.400098	8_2:-64610096	Msa1262060:intron
AAATTGCAACTTTGCTCATG+GGG	0.550865	8_2:-64611151	Msa1262060:CDS
AACAATGACTTCAAAAGAGA+AGG	0.542813	8_2:-64611306	Msa1262060:CDS
AACTGCAGATTCAGCTTCAA+TGG	0.461590	8_2:+64610068	None:intergenic
AAGTTGACTTGCAGGGGAGG+TGG	0.548779	8_2:+64609996	None:intergenic
AATATCATCTGGAAAAGCCA+TGG	0.624162	8_2:+64611371	None:intergenic
AATTGCAGCTTCAGCTTCAA+TGG	0.400607	8_2:+64610044	None:intergenic
AATTTACACTTATCTGCATA+GGG	0.538027	8_2:+64611009	None:intergenic
ACAAATTGCAACTTTGCTCA+TGG	0.469357	8_2:-64611153	Msa1262060:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAATGACTTCAAAAGAGA+AGG	-	chr8_2:64609963-64609982	Msa1262060:CDS	30.0%
GAATTTACACTTATCTGCAT+AGG	+	chr8_2:64610264-64610283	None:intergenic	30.0%
TCTTACCAAATGTAAAACTG+TGG	+	chr8_2:64610711-64610730	None:intergenic	30.0%
GATGAACATAATACAATAGC+TGG	+	chr8_2:64610779-64610798	None:intergenic	30.0%
CCTCAAAATTATTGATGAGT+CGG	+	chr8_2:64610860-64610879	None:intergenic	30.0%
AAGAGTCAGAACAATATACA+TGG	+	chr8_2:64611134-64611153	None:intergenic	30.0%
CTAAGAAGAAACGTATACTT+GGG	-	chr8_2:64611318-64611337	Msa1262060:CDS	30.0%
AGTCAGATCAATCGTATTTA+CGG	-	chr8_2:64611350-64611369	Msa1262060:CDS	30.0%
TTAGAGGTTGGAATATCATC+TGG	+	chr8_2:64609912-64609931	None:intergenic	35.0%
TGATCTGTTTGATTGAGGAA+GGG	+	chr8_2:64610033-64610052	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	64609900	64611391	64609900	ID=Msa1262060;Name=Msa1262060
chr8_2	mRNA	64609900	64611391	64609900	ID=Msa1262060-mRNA-1;Parent=Msa1262060;Name=Msa1262060-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0\|0\|0\|1\|1\|1\|2\|0\|238
chr8_2	exon	64610887	64611391	64610887	ID=Msa1262060-mRNA-1:exon:20910;Parent=Msa1262060-mRNA-1
chr8_2	exon	64609900	64610111	64609900	ID=Msa1262060-mRNA-1:exon:20909;Parent=Msa1262060-mRNA-1
chr8_2	CDS	64610887	64611391	64610887	ID=Msa1262060-mRNA-1:cds;Parent=Msa1262060-mRNA-1
chr8_2	CDS	64609900	64610111	64609900	ID=Msa1262060-mRNA-1:cds;Parent=Msa1262060-mRNA-1

Gene Sequence

>Msa1262060

ATGGCTTTTCCAGATGATATTCCAACCTCTAAGATGTCACCGCCTCAGTTCTCTTCATTGAAAAACAATGACTTCAAAAGAGAAGGAACTTCTCATTCCAATGCATTGATATGCCCTCCTCCAAGGATGACCCTTCCTCAATCAAACAGATCAGACCACATTTTCTACAAAACACGAATTTGTACTAAGTTCAGATTTGGTGCTTGTAGAAACGGAACAAATTGCAACTTTGCTCATGGGGCTGAAGAGATAAGGAAACCACCTCCAAATTCGCAGAAGCTAGTTGGTCCGTGCAACGAAGTTAAAAAAATCATAAACAAGATGAAACTGTGCAAGAAGTATAGCAATGGGGAGGAATGTCCCTATGCAGATAAGTGTAAATTCCTTCATGAAGATCCTGCACAATTTAGGGGCACTTATCGGAAGACTAAGCTGTGTCTCAAGTGGAAGGATACAGGATATTGTTCCTTTGGAAAGAACTGTCACTTTGCTCATTGTGAAGAAGAGTTACAAGTTCCTGGTGGAGCCATTGAAGCTGAATCTGCAGTTGCCATTGAAGCTGAAGCTGCAATTACCATAGAAAATTCAACAAACCCTACCACCTCCCCTGCAAGTCAACTTGTGGAAAAGGAAGAAGAGCAGCCTAAGAAGAAACGTATACTTGGGTTGAAATTCAGTCAGATCAATCGTATTTACGGTGATTGGATTGACGATTGA

Protein sequence

>Msa1262060

MAFPDDIPTSKMSPPQFSSLKNNDFKREGTSHSNALICPPPRMTLPQSNRSDHIFYKTRICTKFRFGACRNGTNCNFAHGAEEIRKPPPNSQKLVGPCNEVKKIINKMKLCKKYSNGEECPYADKCKFLHEDPAQFRGTYRKTKLCLKWKDTGYCSFGKNCHFAHCEEELQVPGGAIEAESAVAIEAEAAITIENSTNPTTSPASQLVEKEEEQPKKKRILGLKFSQINRIYGDWIDD*