AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1262170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1262170 MtrunA17_Chr4g0063461 94.167 600 21 2 1 592 1 594 0.0 1128
Msa1262170 MtrunA17_Chr8g0375251 59.504 121 32 1 7 110 117 237 9.02e-44 167
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1262170 AT2G02160.1 53.061 147 51 5 2 131 25 170 2.92e-40 156

Find 124 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTGTTGGTATTGGTTATC+TGG 0.161820 8_2:+64787389 Msa1262170:CDS
CACCGATTGCGTTTATTTCT+TGG 0.184040 8_2:+64787027 Msa1262170:CDS
TTGCTTCAAAATTTCTTCTT+TGG 0.213240 8_2:+64788936 Msa1262170:CDS
CTTGCCTTTGATGCCTTTCC+CGG 0.220942 8_2:-64789545 None:intergenic
TTTGCAGAGTCATTCTTTAA+AGG 0.222829 8_2:-64788583 None:intergenic
TTTGCAGAGTCATTCTTTAA+AGG 0.222829 8_2:-64788607 None:intergenic
TTGCTTCACAATTGGTTTCC+TGG 0.230232 8_2:-64789748 None:intergenic
TTACACTAACATTACGATTA+TGG 0.244673 8_2:-64786905 None:intergenic
TTAATATCGGACAAAGCTTT+TGG 0.255089 8_2:-64788853 None:intergenic
AATAAACCCAACTTAGAAAA+TGG 0.256208 8_2:+64788754 Msa1262170:CDS
CATTCAGAGGTTTGGGATCC+TGG 0.288878 8_2:-64789887 None:intergenic
GCTTTCTTGGCCTACTTTGC+TGG 0.293087 8_2:-64789677 None:intergenic
CCAACAAGCAAAGGTTATTC+AGG 0.302583 8_2:+64789649 Msa1262170:CDS
ATTGTCTTGTTTGCAGTTGC+AGG 0.306173 8_2:-64788394 None:intergenic
GAGAATTTCATTCAGAGGTT+TGG 0.311271 8_2:-64789895 None:intergenic
AGAATTTCATTCAGAGGTTT+GGG 0.313834 8_2:-64789894 None:intergenic
TTTGCAGAGTCATTCATTAA+AGG 0.316622 8_2:-64788631 None:intergenic
ACATGAGTCGTCTTCTTTGA+TGG 0.333051 8_2:+64789515 Msa1262170:CDS
CCTGAATAACCTTTGCTTGT+TGG 0.334230 8_2:-64789649 None:intergenic
CTTGGCCTACTTTGCTGGTA+AGG 0.345619 8_2:-64789672 None:intergenic
TTTATTTCTGCAAGAGTCTT+GGG 0.348071 8_2:-64789807 None:intergenic
GTTCTTGTTCATGATGAATC+TGG 0.352114 8_2:+64789111 Msa1262170:CDS
CTTCTTTGATGGTTCAAAAC+CGG 0.368582 8_2:+64789526 Msa1262170:CDS
ATATTTGCCAGTGCTTGATA+TGG 0.371228 8_2:+64789164 Msa1262170:CDS
GCCATCTCTCACTCAATCTA+TGG 0.380953 8_2:-64789928 None:intergenic
AGTACTGCTCATTCAGTTCA+TGG 0.395523 8_2:-64789191 None:intergenic
GGCTTAACCCAAGGGATTGT+TGG 0.404034 8_2:+64787375 Msa1262170:CDS
CTTAGGCTGAGGTTTAATAT+CGG 0.404253 8_2:-64788866 None:intergenic
TGGGAACAACCTGGGTTATG+AGG 0.406841 8_2:+64789131 Msa1262170:CDS
AAGCTCGTCAGCTGGTTTCC+AGG 0.411618 8_2:+64789869 Msa1262170:CDS
ATCAAGCACTGGCAAATATT+CGG 0.411769 8_2:-64789160 None:intergenic
ACCCAAGGGATTGTTGGTAT+TGG 0.413035 8_2:+64787381 Msa1262170:CDS
GATCTCTGTTGCTTCACAAT+TGG 0.413086 8_2:-64789756 None:intergenic
ATTGTTGGTATTGGTTATCT+GGG 0.423158 8_2:+64787390 Msa1262170:CDS
TTAGAAAATGGAACTGCATC+GGG 0.423544 8_2:+64788766 Msa1262170:CDS
GAAGGAAATGGCCGTTTAGC+TGG 0.432071 8_2:-64789714 None:intergenic
TGAACTGAATGAGCAGTACT+TGG 0.434200 8_2:+64789194 Msa1262170:CDS
AGTATCTAAGACCATCTCTC+TGG 0.436807 8_2:-64789358 None:intergenic
TTCTTTGATGGTTCAAAACC+GGG 0.442952 8_2:+64789527 Msa1262170:CDS
CTTCCATTGTCATTCTTCAA+AGG 0.447586 8_2:-64788727 None:intergenic
TTCCTTCTTCTAAAGAATCC+AGG 0.454352 8_2:+64789730 Msa1262170:CDS
TTCCTGGATTCTTTAGAAGA+AGG 0.458511 8_2:-64789732 None:intergenic
TCAGGCCTTACCAGCAAAGT+AGG 0.477593 8_2:+64789667 Msa1262170:CDS
CATTGTGAAAGCTCGTCAGC+TGG 0.479616 8_2:+64789861 Msa1262170:CDS
AACCAATACCAACAATCCCT+TGG 0.486459 8_2:-64787383 None:intergenic
GCAAAGCCGTCGTCTGGTAA+TGG 0.491634 8_2:-64788994 None:intergenic
TGAACAAGAACATCAAATCC+AGG 0.492763 8_2:-64789099 None:intergenic
TGATGAATCTGGGAACAACC+TGG 0.493882 8_2:+64789122 Msa1262170:CDS
CCACAAACTTTCCTTTCACT+AGG 0.496086 8_2:-64789330 None:intergenic
ACCAATACCAACAATCCCTT+GGG 0.499094 8_2:-64787382 None:intergenic
TTATGAGCAAAGCCGTCGTC+TGG 0.499701 8_2:-64789000 None:intergenic
TTCACCCCTCACTTGCAAGA+AGG 0.501218 8_2:+64787051 Msa1262170:CDS
TGATGGTTCAAAACCGGGAA+AGG 0.501541 8_2:+64789532 Msa1262170:CDS
GGTAGCTGAAGATCTTCCTT+AGG 0.509144 8_2:-64788883 None:intergenic
ACTCCAGTGTGTCCATCCAC+AGG 0.509244 8_2:-64788343 None:intergenic
CTTCTTAAGAGACCTGTGTC+AGG 0.510576 8_2:-64789492 None:intergenic
CTTGGGCCCTGAAAATGCAT+TGG 0.511654 8_2:-64789790 None:intergenic
ACAGTAAGCGAGCTATCATC+AGG 0.513126 8_2:-64788484 None:intergenic
GATTCTTTAGAAGAAGGAAA+TGG 0.514362 8_2:-64789726 None:intergenic
TTTACAGTGTCATTCTTCAA+AGG 0.519264 8_2:-64788511 None:intergenic
TTTACAGTGTCATTCTTCAA+AGG 0.519264 8_2:-64788535 None:intergenic
TTTGTAGAGTCATTCTTCAA+AGG 0.519264 8_2:-64788559 None:intergenic
GAAGATTGTGTAGGTTCAGA+TGG 0.524821 8_2:-64788367 None:intergenic
CTCAGTGTAACGAACGAACA+TGG 0.525005 8_2:+64786982 Msa1262170:exon
GAACTGAATGAGCAGTACTT+GGG 0.530894 8_2:+64789195 Msa1262170:CDS
TTCTTGTTCATGATGAATCT+GGG 0.535477 8_2:+64789112 Msa1262170:CDS
TTCACAGTGTCAATCTTCAA+AGG 0.538247 8_2:-64788655 None:intergenic
TTCACAGTGTCAATCTTCAA+AGG 0.538247 8_2:-64788703 None:intergenic
AGCCAAGAAATAAACGCAAT+CGG 0.538661 8_2:-64787029 None:intergenic
TTTCAATTGCCAACAAGCAA+AGG 0.539740 8_2:+64789640 Msa1262170:CDS
ATAATCGTAATGTTAGTGTA+AGG 0.540304 8_2:+64786907 Msa1262170:five_prime_UTR
TTGAACCTTCTTGCAAGTGA+GGG 0.541701 8_2:-64787056 None:intergenic
TGAAGATCTTCCTTAGGCTG+AGG 0.541736 8_2:-64788877 None:intergenic
CTTAGAAAATGGAACTGCAT+CGG 0.543707 8_2:+64788765 Msa1262170:CDS
CCTAGTGAAAGGAAAGTTTG+TGG 0.543844 8_2:+64789330 Msa1262170:CDS
CGATATTAAACCTCAGCCTA+AGG 0.549253 8_2:+64788867 Msa1262170:CDS
TTGGTCAGCGGCAAAATAGA+AGG 0.550102 8_2:+64789571 Msa1262170:CDS
TTTGCAGAGTCATTCTTCAA+AGG 0.551294 8_2:-64788679 None:intergenic
GGTTAAGCCTCGCAATCTCA+TGG 0.556438 8_2:-64787361 None:intergenic
GGGAACAACCTGGGTTATGA+GGG 0.557547 8_2:+64789132 Msa1262170:CDS
ATTGAACCTTCTTGCAAGTG+AGG 0.561506 8_2:-64787057 None:intergenic
AAAACCGGGAAAGGCATCAA+AGG 0.564085 8_2:+64789541 Msa1262170:CDS
ACAAGCAGCCATCTCAGAAG+TGG 0.566131 8_2:-64789409 None:intergenic
CGTTCGTTACACTGAGAGAG+AGG 0.566494 8_2:-64786975 None:intergenic
TCTTTGAGAATTTCATTCAG+AGG 0.567578 8_2:-64789900 None:intergenic
TCGAATGTCCACTTCTGAGA+TGG 0.567972 8_2:+64789401 Msa1262170:CDS
ATAAAGAAGCTGCTGTGACT+CGG 0.570342 8_2:+64788962 Msa1262170:CDS
GATTACGACACTATGTGCTC+AGG 0.573085 8_2:+64789240 Msa1262170:CDS
CAGCCTGTGGATGGACACAC+TGG 0.576235 8_2:+64788340 Msa1262170:intron
GTATCTAAGACCATCTCTCT+GGG 0.580465 8_2:-64789357 None:intergenic
TGGTCATCCATATCAAGCAC+TGG 0.581438 8_2:-64789171 None:intergenic
CCCGAAAATGTTAAACAGCA+AGG 0.581671 8_2:+64788910 Msa1262170:CDS
AAATAGTCAAGTAGAGCCTG+AGG 0.587572 8_2:+64789065 Msa1262170:CDS
GAACAAGAACATCAAATCCA+GGG 0.590993 8_2:-64789098 None:intergenic
ATGCACTGAGCAGAGTTCAG+AGG 0.592492 8_2:+64789035 Msa1262170:CDS
GTCAATAGTCCTCCTGACAC+AGG 0.595790 8_2:+64789480 Msa1262170:CDS
AGAAGGTTAACATCACAAGT+AGG 0.600688 8_2:+64789588 Msa1262170:CDS
TTGTGGTTATCCCAGAGAGA+TGG 0.602992 8_2:+64789347 Msa1262170:CDS
GCAGGCAATGAAGATTGTGT+AGG 0.603065 8_2:-64788376 None:intergenic
TGAACCTTCTTGCAAGTGAG+GGG 0.613141 8_2:-64787055 None:intergenic
GATGAATCTGGGAACAACCT+GGG 0.613350 8_2:+64789123 Msa1262170:CDS
AGGGTGTAGAATGTGAGTAT+AGG 0.616264 8_2:+64787336 Msa1262170:intron
AGGCATCAAAGGCAAGACAT+TGG 0.618149 8_2:+64789552 Msa1262170:CDS
AACAACCTGGGTTATGAGGG+CGG 0.623566 8_2:+64789135 Msa1262170:CDS
TGGTTAAAATGTGTATCCCT+TGG 0.626602 8_2:-64788817 None:intergenic
AGATTGCGAGGCTTAACCCA+AGG 0.626610 8_2:+64787366 Msa1262170:CDS
GGGTGTCTAAAAGCACAAGT+TGG 0.629066 8_2:-64787425 None:intergenic
TGTAGCATCATCCACACCAA+GGG 0.637768 8_2:+64788801 Msa1262170:CDS
GATTGCGAGGCTTAACCCAA+GGG 0.640036 8_2:+64787367 Msa1262170:CDS
AACTGAATGAGCAGTACTTG+GGG 0.640126 8_2:+64789196 Msa1262170:CDS
GTCACCATCTGAGAAGACGC+AGG 0.644495 8_2:+64789454 Msa1262170:CDS
GTCAAGTAGAGCCTGAGGAA+CGG 0.645293 8_2:+64789070 Msa1262170:CDS
AAGCCTTTGAAGAATGACAA+TGG 0.648926 8_2:+64788724 Msa1262170:CDS
TCACCATCTGAGAAGACGCA+GGG 0.650947 8_2:+64789455 Msa1262170:CDS
CTTAAGAGACCTGTGTCAGG+AGG 0.654168 8_2:-64789489 None:intergenic
ATAGGCACCATGAGATTGCG+AGG 0.657532 8_2:+64787354 Msa1262170:CDS
TGCAACTGCAAACAAGACAA+TGG 0.662371 8_2:+64788396 Msa1262170:CDS
AAAATGTGTATCCCTTGGTG+TGG 0.666851 8_2:-64788812 None:intergenic
GACTCTCCATTACCAGACGA+CGG 0.668142 8_2:+64788988 Msa1262170:CDS
GTGTAGCATCATCCACACCA+AGG 0.671419 8_2:+64788800 Msa1262170:CDS
AACAAGAACATCAAATCCAG+GGG 0.675043 8_2:-64789097 None:intergenic
AAGAACATCAAATCCAGGGG+AGG 0.679312 8_2:-64789094 None:intergenic
AAAGGCAAGACATTGGTCAG+CGG 0.696430 8_2:+64789559 Msa1262170:CDS
CCATCTGAGAAGACGCAGGG+AGG 0.719477 8_2:+64789458 Msa1262170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGGAATAAATATAATTTTT+TGG + chr8_2:64787862-64787881 Msa1262170:intron 10.0%
!! AAAAAAATGAATATGAAATT+TGG - chr8_2:64788244-64788263 None:intergenic 10.0%
!!! AATTCTGTTTTTGTTTTTAA+TGG + chr8_2:64787260-64787279 Msa1262170:intron 15.0%
!!! TTGAAAATGTTATAATCTTT+TGG + chr8_2:64787522-64787541 Msa1262170:intron 15.0%
!! TATATCAGTAAAAAAAACAT+TGG + chr8_2:64787615-64787634 Msa1262170:intron 15.0%
!! AAAATATCAAATTAATGAAC+AGG + chr8_2:64788143-64788162 Msa1262170:intron 15.0%
!!! TAAATTTTTGTTCTGTAAGT+TGG + chr8_2:64787770-64787789 Msa1262170:intron 20.0%
!! TTATATTTATTCCATTGACA+AGG - chr8_2:64787857-64787876 None:intergenic 20.0%
!! TGTTTCTTAAAATATCAAGT+TGG + chr8_2:64787913-64787932 Msa1262170:intron 20.0%
!!! TTTTATATATTGTTTGCATC+TGG + chr8_2:64788049-64788068 Msa1262170:intron 20.0%
!! AAATGAATATGAAATTTGGA+GGG - chr8_2:64788240-64788259 None:intergenic 20.0%
!! AAAATGAATATGAAATTTGG+AGG - chr8_2:64788241-64788260 None:intergenic 20.0%
! ATAATCGTAATGTTAGTGTA+AGG + chr8_2:64786907-64786926 Msa1262170:five_prime_UTR 25.0%
! TACTGATATACAATACATCA+AGG - chr8_2:64787605-64787624 None:intergenic 25.0%
! TAAGAAACATTACAAATGTG+AGG - chr8_2:64787649-64787668 None:intergenic 25.0%
! GAACAAAAATTTACAAGAGA+CGG - chr8_2:64787763-64787782 None:intergenic 25.0%
! TTCATCCAAGAAATCAATTA+AGG - chr8_2:64788108-64788127 None:intergenic 25.0%
!! AATTGATTTCTTGGATGAAT+AGG + chr8_2:64788109-64788128 Msa1262170:intron 25.0%
! AATGAATATGAAATTTGGAG+GGG - chr8_2:64788239-64788258 None:intergenic 25.0%
! CAGATAGATTAATACTAAAC+AGG - chr8_2:64788275-64788294 None:intergenic 25.0%
! AATAAACCCAACTTAGAAAA+TGG + chr8_2:64788754-64788773 Msa1262170:CDS 25.0%
! TTGCTTCAAAATTTCTTCTT+TGG + chr8_2:64788936-64788955 Msa1262170:CDS 25.0%
!!! ATGATTACAGATGTTTTGAT+AGG + chr8_2:64789295-64789314 Msa1262170:CDS 25.0%
!!! TGATTACAGATGTTTTGATA+GGG + chr8_2:64789296-64789315 Msa1262170:CDS 25.0%
!! TCTTAGATACTATATTTTCC+AGG + chr8_2:64789370-64789389 Msa1262170:CDS 25.0%
!! ATACTATATTTTCCAGGAAA+AGG + chr8_2:64789376-64789395 Msa1262170:CDS 25.0%
TCGAAAATGTGACGAAAATA+GGG - chr8_2:64787154-64787173 None:intergenic 30.0%
ATCGAAAATGTGACGAAAAT+AGG - chr8_2:64787155-64787174 None:intergenic 30.0%
GAAAATGTAACCTAACTGAA+CGG - chr8_2:64787201-64787220 None:intergenic 30.0%
CCTGCAAACAAAATAAACAA+CGG - chr8_2:64787319-64787338 None:intergenic 30.0%
!!! CGTTGTTTATTTTGTTTGCA+GGG + chr8_2:64787317-64787336 Msa1262170:intron 30.0%
!! ATTGTTGGTATTGGTTATCT+GGG + chr8_2:64787390-64787409 Msa1262170:CDS 30.0%
!!! GTACTTTTTTTCGCTTATGT+GGG + chr8_2:64787490-64787509 Msa1262170:intron 30.0%
!!! TCTTTTGGACTTAATTTGCA+CGG + chr8_2:64787537-64787556 Msa1262170:intron 30.0%
!! ATTTTTGTTCTGTAAGTTGG+TGG + chr8_2:64787773-64787792 Msa1262170:intron 30.0%
AAATCATCAAAACACTTGCA+AGG - chr8_2:64788080-64788099 None:intergenic 30.0%
!!! TGCAAGTGTTTTGATGATTT+TGG + chr8_2:64788080-64788099 Msa1262170:intron 30.0%
! TGGTTCCTTAATTGATTTCT+TGG + chr8_2:64788100-64788119 Msa1262170:intron 30.0%
ATGAATATGAAATTTGGAGG+GGG - chr8_2:64788238-64788257 None:intergenic 30.0%
AAAATTAGATGAAAGTGACG+AGG - chr8_2:64788309-64788328 None:intergenic 30.0%
CCATTGAAGAAAAAGTAACA+GGG - chr8_2:64788424-64788443 None:intergenic 30.0%
!!! CCTGTTACTTTTTCTTCAAT+GGG + chr8_2:64788422-64788441 Msa1262170:CDS 30.0%
! TTTACAGTGTCATTCTTCAA+AGG - chr8_2:64788514-64788533 None:intergenic 30.0%
! TTTACAGTGTCATTCTTCAA+AGG - chr8_2:64788514-64788533 None:intergenic 30.0%
TTTGTAGAGTCATTCTTCAA+AGG - chr8_2:64788562-64788581 None:intergenic 30.0%
TTTGCAGAGTCATTCTTTAA+AGG - chr8_2:64788586-64788605 None:intergenic 30.0%
TTTGCAGAGTCATTCTTTAA+AGG - chr8_2:64788586-64788605 None:intergenic 30.0%
TTTGCAGAGTCATTCATTAA+AGG - chr8_2:64788634-64788653 None:intergenic 30.0%
! TTAATATCGGACAAAGCTTT+TGG - chr8_2:64788856-64788875 None:intergenic 30.0%
!!! TGTTTAACATTTTCGGGTAA+TGG - chr8_2:64788907-64788926 None:intergenic 30.0%
!!! ACCTTGCTGTTTAACATTTT+CGG - chr8_2:64788914-64788933 None:intergenic 30.0%
TTCTTGTTCATGATGAATCT+GGG + chr8_2:64789112-64789131 Msa1262170:CDS 30.0%
! ATTTTACTAGTCCTAGTGAA+AGG + chr8_2:64789319-64789338 Msa1262170:CDS 30.0%
! TTTTCTCTATAGTGCTTTCT+TGG - chr8_2:64789693-64789712 None:intergenic 30.0%
ATAGAGAAAAACCAGCTAAA+CGG + chr8_2:64789703-64789722 Msa1262170:CDS 30.0%
! GATTCTTTAGAAGAAGGAAA+TGG - chr8_2:64789729-64789748 None:intergenic 30.0%
! AGAAATCCAATGCATTTTCA+GGG + chr8_2:64789784-64789803 Msa1262170:CDS 30.0%
!! TTTATTTCTGCAAGAGTCTT+GGG - chr8_2:64789810-64789829 None:intergenic 30.0%
!!! TTTTATTTCTGCAAGAGTCT+TGG - chr8_2:64789811-64789830 None:intergenic 30.0%
AAAGAAGAGAAGAAAAAGTC+TGG + chr8_2:64789828-64789847 Msa1262170:CDS 30.0%
AGAATTTCATTCAGAGGTTT+GGG - chr8_2:64789897-64789916 None:intergenic 30.0%
! TCTTTGAGAATTTCATTCAG+AGG - chr8_2:64789903-64789922 None:intergenic 30.0%
AGCCAAGAAATAAACGCAAT+CGG - chr8_2:64787032-64787051 None:intergenic 35.0%
!!! CCGTTGTTTATTTTGTTTGC+AGG + chr8_2:64787316-64787335 Msa1262170:intron 35.0%
!! GATTGTTGGTATTGGTTATC+TGG + chr8_2:64787389-64787408 Msa1262170:CDS 35.0%
!!! GGTACTTTTTTTCGCTTATG+TGG + chr8_2:64787489-64787508 Msa1262170:intron 35.0%
!! TTAATTTGCACGGTTAGGTT+AGG + chr8_2:64787547-64787566 Msa1262170:intron 35.0%
CATTACAAATGTGAGGACTA+AGG - chr8_2:64787642-64787661 None:intergenic 35.0%
TGAACGCTTCTGTGTTTAAA+TGG + chr8_2:64787680-64787699 Msa1262170:intron 35.0%
ACTATAGGTAAAATGCAGCT+CGG - chr8_2:64787706-64787725 None:intergenic 35.0%
! TTTTGTCCAATTGTTGAGTC+AGG - chr8_2:64788014-64788033 None:intergenic 35.0%
! TTTGTAATTTTGTCAGCCTG+TGG + chr8_2:64788327-64788346 Msa1262170:intron 35.0%
!!! CCCTGTTACTTTTTCTTCAA+TGG + chr8_2:64788421-64788440 Msa1262170:CDS 35.0%
CCCATTGAAGAAAAAGTAAC+AGG - chr8_2:64788425-64788444 None:intergenic 35.0%
!! TTCAATGGGTTTTGCAACAA+AGG + chr8_2:64788436-64788455 Msa1262170:CDS 35.0%
!! AGCAAATGCTCATTTTTGCA+TGG + chr8_2:64788460-64788479 Msa1262170:CDS 35.0%
TTCACAGTGTCAATCTTCAA+AGG - chr8_2:64788658-64788677 None:intergenic 35.0%
TTTGCAGAGTCATTCTTCAA+AGG - chr8_2:64788682-64788701 None:intergenic 35.0%
TTCACAGTGTCAATCTTCAA+AGG - chr8_2:64788658-64788677 None:intergenic 35.0%
! AAGCCTTTGAAGAATGACAA+TGG + chr8_2:64788724-64788743 Msa1262170:CDS 35.0%
CTTCCATTGTCATTCTTCAA+AGG - chr8_2:64788730-64788749 None:intergenic 35.0%
! GCAGTTCCATTTTCTAAGTT+GGG - chr8_2:64788763-64788782 None:intergenic 35.0%
! TGCAGTTCCATTTTCTAAGT+TGG - chr8_2:64788764-64788783 None:intergenic 35.0%
CTTAGAAAATGGAACTGCAT+CGG + chr8_2:64788765-64788784 Msa1262170:CDS 35.0%
TTAGAAAATGGAACTGCATC+GGG + chr8_2:64788766-64788785 Msa1262170:CDS 35.0%
TGGTTAAAATGTGTATCCCT+TGG - chr8_2:64788820-64788839 None:intergenic 35.0%
!!! CTTTTGGAGCAGATAAAGAT+TGG - chr8_2:64788840-64788859 None:intergenic 35.0%
CTTAGGCTGAGGTTTAATAT+CGG - chr8_2:64788869-64788888 None:intergenic 35.0%
!!! CCTTGCTGTTTAACATTTTC+GGG - chr8_2:64788913-64788932 None:intergenic 35.0%
AACAAGAACATCAAATCCAG+GGG - chr8_2:64789100-64789119 None:intergenic 35.0%
GAACAAGAACATCAAATCCA+GGG - chr8_2:64789101-64789120 None:intergenic 35.0%
TGAACAAGAACATCAAATCC+AGG - chr8_2:64789102-64789121 None:intergenic 35.0%
GTTCTTGTTCATGATGAATC+TGG + chr8_2:64789111-64789130 Msa1262170:CDS 35.0%
!! ATCAAGCACTGGCAAATATT+CGG - chr8_2:64789163-64789182 None:intergenic 35.0%
ATATTTGCCAGTGCTTGATA+TGG + chr8_2:64789164-64789183 Msa1262170:CDS 35.0%
! CTTCTTTGATGGTTCAAAAC+CGG + chr8_2:64789526-64789545 Msa1262170:CDS 35.0%
! TTCTTTGATGGTTCAAAACC+GGG + chr8_2:64789527-64789546 Msa1262170:CDS 35.0%
AGAAGGTTAACATCACAAGT+AGG + chr8_2:64789588-64789607 Msa1262170:CDS 35.0%
TTTCAATTGCCAACAAGCAA+AGG + chr8_2:64789640-64789659 Msa1262170:CDS 35.0%
! TTCCTTCTTCTAAAGAATCC+AGG + chr8_2:64789730-64789749 Msa1262170:CDS 35.0%
! TTCCTGGATTCTTTAGAAGA+AGG - chr8_2:64789735-64789754 None:intergenic 35.0%
! CAGAAATCCAATGCATTTTC+AGG + chr8_2:64789783-64789802 Msa1262170:CDS 35.0%
GAGAATTTCATTCAGAGGTT+TGG - chr8_2:64789898-64789917 None:intergenic 35.0%
! CACCGATTGCGTTTATTTCT+TGG + chr8_2:64787027-64787046 Msa1262170:CDS 40.0%
TTGAACCTTCTTGCAAGTGA+GGG - chr8_2:64787059-64787078 None:intergenic 40.0%
ATTGAACCTTCTTGCAAGTG+AGG - chr8_2:64787060-64787079 None:intergenic 40.0%
ATTGAATTCGCGATTGCGAA+GGG - chr8_2:64787090-64787109 None:intergenic 40.0%
AATTGAATTCGCGATTGCGA+AGG - chr8_2:64787091-64787110 None:intergenic 40.0%
!! GCTTTTGTTTCCGTTCAGTT+AGG + chr8_2:64787188-64787207 Msa1262170:intron 40.0%
AGGGTGTAGAATGTGAGTAT+AGG + chr8_2:64787336-64787355 Msa1262170:intron 40.0%
ACCAATACCAACAATCCCTT+GGG - chr8_2:64787385-64787404 None:intergenic 40.0%
AACCAATACCAACAATCCCT+TGG - chr8_2:64787386-64787405 None:intergenic 40.0%
GGCACAATGAAAAACTCACA+GGG - chr8_2:64787448-64787467 None:intergenic 40.0%
AGGCACAATGAAAAACTCAC+AGG - chr8_2:64787449-64787468 None:intergenic 40.0%
! AATCGAGAAGTGCAAATGCA+AGG - chr8_2:64787469-64787488 None:intergenic 40.0%
TTGCATTTGCACTTCTCGAT+TGG + chr8_2:64787468-64787487 Msa1262170:intron 40.0%
!! TGGACTTAATTTGCACGGTT+AGG + chr8_2:64787542-64787561 Msa1262170:intron 40.0%
! ACGGTTAGGTTAGGTTTTTG+TGG + chr8_2:64787556-64787575 Msa1262170:intron 40.0%
GGTTCGATGTGTCAGATTAA+AGG + chr8_2:64787577-64787596 Msa1262170:intron 40.0%
!!! AGACACTTTTTCCATCACAC+AGG - chr8_2:64787732-64787751 None:intergenic 40.0%
TGCATGTACTTCCTTGTCAA+TGG + chr8_2:64787843-64787862 Msa1262170:intron 40.0%
TCCAATTGTTGAGTCAGGAT+GGG - chr8_2:64788009-64788028 None:intergenic 40.0%
! TAATTTTGTCAGCCTGTGGA+TGG + chr8_2:64788331-64788350 Msa1262170:intron 40.0%
GAAGATTGTGTAGGTTCAGA+TGG - chr8_2:64788370-64788389 None:intergenic 40.0%
!! ATTGTCTTGTTTGCAGTTGC+AGG - chr8_2:64788397-64788416 None:intergenic 40.0%
TGCAACTGCAAACAAGACAA+TGG + chr8_2:64788396-64788415 Msa1262170:CDS 40.0%
AAAATGTGTATCCCTTGGTG+TGG - chr8_2:64788815-64788834 None:intergenic 40.0%
CGATATTAAACCTCAGCCTA+AGG + chr8_2:64788867-64788886 Msa1262170:CDS 40.0%
CCCGAAAATGTTAAACAGCA+AGG + chr8_2:64788910-64788929 Msa1262170:CDS 40.0%
ATAAAGAAGCTGCTGTGACT+CGG + chr8_2:64788962-64788981 Msa1262170:CDS 40.0%
AAATAGTCAAGTAGAGCCTG+AGG + chr8_2:64789065-64789084 Msa1262170:CDS 40.0%
AGTACTGCTCATTCAGTTCA+TGG - chr8_2:64789194-64789213 None:intergenic 40.0%
TGAACTGAATGAGCAGTACT+TGG + chr8_2:64789194-64789213 Msa1262170:CDS 40.0%
GAACTGAATGAGCAGTACTT+GGG + chr8_2:64789195-64789214 Msa1262170:CDS 40.0%
AACTGAATGAGCAGTACTTG+GGG + chr8_2:64789196-64789215 Msa1262170:CDS 40.0%
CCACAAACTTTCCTTTCACT+AGG - chr8_2:64789333-64789352 None:intergenic 40.0%
CCTAGTGAAAGGAAAGTTTG+TGG + chr8_2:64789330-64789349 Msa1262170:CDS 40.0%
! GTATCTAAGACCATCTCTCT+GGG - chr8_2:64789360-64789379 None:intergenic 40.0%
! AGTATCTAAGACCATCTCTC+TGG - chr8_2:64789361-64789380 None:intergenic 40.0%
ACATGAGTCGTCTTCTTTGA+TGG + chr8_2:64789515-64789534 Msa1262170:CDS 40.0%
CCTGAATAACCTTTGCTTGT+TGG - chr8_2:64789652-64789671 None:intergenic 40.0%
CCAACAAGCAAAGGTTATTC+AGG + chr8_2:64789649-64789668 Msa1262170:CDS 40.0%
! TTGCTTCACAATTGGTTTCC+TGG - chr8_2:64789751-64789770 None:intergenic 40.0%
! GATCTCTGTTGCTTCACAAT+TGG - chr8_2:64789759-64789778 None:intergenic 40.0%
CTCAGTGTAACGAACGAACA+TGG + chr8_2:64786982-64787001 Msa1262170:exon 45.0%
TGAACCTTCTTGCAAGTGAG+GGG - chr8_2:64787058-64787077 None:intergenic 45.0%
ACCCAAGGGATTGTTGGTAT+TGG + chr8_2:64787381-64787400 Msa1262170:CDS 45.0%
! GGGTGTCTAAAAGCACAAGT+TGG - chr8_2:64787428-64787447 None:intergenic 45.0%
CCATCACACAGGTTCACTAT+AGG - chr8_2:64787721-64787740 None:intergenic 45.0%
CCTATAGTGAACCTGTGTGA+TGG + chr8_2:64787718-64787737 Msa1262170:intron 45.0%
ACCCATCCTGACTCAACAAT+TGG + chr8_2:64788005-64788024 Msa1262170:intron 45.0%
GTCCAATTGTTGAGTCAGGA+TGG - chr8_2:64788010-64788029 None:intergenic 45.0%
ATGAAATTTGGAGGGGGAGT+GGG - chr8_2:64788232-64788251 None:intergenic 45.0%
TATGAAATTTGGAGGGGGAG+TGG - chr8_2:64788233-64788252 None:intergenic 45.0%
GCAGGCAATGAAGATTGTGT+AGG - chr8_2:64788379-64788398 None:intergenic 45.0%
ACAGTAAGCGAGCTATCATC+AGG - chr8_2:64788487-64788506 None:intergenic 45.0%
TGTAGCATCATCCACACCAA+GGG + chr8_2:64788801-64788820 Msa1262170:CDS 45.0%
TGAAGATCTTCCTTAGGCTG+AGG - chr8_2:64788880-64788899 None:intergenic 45.0%
GGTAGCTGAAGATCTTCCTT+AGG - chr8_2:64788886-64788905 None:intergenic 45.0%
AAGAACATCAAATCCAGGGG+AGG - chr8_2:64789097-64789116 None:intergenic 45.0%
TGATGAATCTGGGAACAACC+TGG + chr8_2:64789122-64789141 Msa1262170:CDS 45.0%
GATGAATCTGGGAACAACCT+GGG + chr8_2:64789123-64789142 Msa1262170:CDS 45.0%
TGGTCATCCATATCAAGCAC+TGG - chr8_2:64789174-64789193 None:intergenic 45.0%
GATTACGACACTATGTGCTC+AGG + chr8_2:64789240-64789259 Msa1262170:CDS 45.0%
TTGTGGTTATCCCAGAGAGA+TGG + chr8_2:64789347-64789366 Msa1262170:CDS 45.0%
! GGACATTCGAATCCTTTTCC+TGG - chr8_2:64789391-64789410 None:intergenic 45.0%
! TCGAATGTCCACTTCTGAGA+TGG + chr8_2:64789401-64789420 Msa1262170:CDS 45.0%
CTTCTTAAGAGACCTGTGTC+AGG - chr8_2:64789495-64789514 None:intergenic 45.0%
TGATGGTTCAAAACCGGGAA+AGG + chr8_2:64789532-64789551 Msa1262170:CDS 45.0%
!! AAAACCGGGAAAGGCATCAA+AGG + chr8_2:64789541-64789560 Msa1262170:CDS 45.0%
AGGCATCAAAGGCAAGACAT+TGG + chr8_2:64789552-64789571 Msa1262170:CDS 45.0%
AAAGGCAAGACATTGGTCAG+CGG + chr8_2:64789559-64789578 Msa1262170:CDS 45.0%
TTGGTCAGCGGCAAAATAGA+AGG + chr8_2:64789571-64789590 Msa1262170:CDS 45.0%
CGTTCGTTACACTGAGAGAG+AGG - chr8_2:64786978-64786997 None:intergenic 50.0%
TTCACCCCTCACTTGCAAGA+AGG + chr8_2:64787051-64787070 Msa1262170:CDS 50.0%
ATAGGCACCATGAGATTGCG+AGG + chr8_2:64787354-64787373 Msa1262170:CDS 50.0%
GGTTAAGCCTCGCAATCTCA+TGG - chr8_2:64787364-64787383 None:intergenic 50.0%
AGATTGCGAGGCTTAACCCA+AGG + chr8_2:64787366-64787385 Msa1262170:CDS 50.0%
GATTGCGAGGCTTAACCCAA+GGG + chr8_2:64787367-64787386 Msa1262170:CDS 50.0%
GGCTTAACCCAAGGGATTGT+TGG + chr8_2:64787375-64787394 Msa1262170:CDS 50.0%
!! GTTCTGTAAGTTGGTGGCGA+TGG + chr8_2:64787779-64787798 Msa1262170:intron 50.0%
TGAAATTTGGAGGGGGAGTG+GGG - chr8_2:64788231-64788250 None:intergenic 50.0%
GTGTAGCATCATCCACACCA+AGG + chr8_2:64788800-64788819 Msa1262170:CDS 50.0%
GACTCTCCATTACCAGACGA+CGG + chr8_2:64788988-64789007 Msa1262170:CDS 50.0%
TTATGAGCAAAGCCGTCGTC+TGG - chr8_2:64789003-64789022 None:intergenic 50.0%
GAACTCTGCTCAGTGCATGA+AGG - chr8_2:64789033-64789052 None:intergenic 50.0%
ATGCACTGAGCAGAGTTCAG+AGG + chr8_2:64789035-64789054 Msa1262170:CDS 50.0%
GTCAAGTAGAGCCTGAGGAA+CGG + chr8_2:64789070-64789089 Msa1262170:CDS 50.0%
TGGGAACAACCTGGGTTATG+AGG + chr8_2:64789131-64789150 Msa1262170:CDS 50.0%
GGGAACAACCTGGGTTATGA+GGG + chr8_2:64789132-64789151 Msa1262170:CDS 50.0%
AACAACCTGGGTTATGAGGG+CGG + chr8_2:64789135-64789154 Msa1262170:CDS 50.0%
ACAAGCAGCCATCTCAGAAG+TGG - chr8_2:64789412-64789431 None:intergenic 50.0%
TCACCATCTGAGAAGACGCA+GGG + chr8_2:64789455-64789474 Msa1262170:CDS 50.0%
GTCAATAGTCCTCCTGACAC+AGG + chr8_2:64789480-64789499 Msa1262170:CDS 50.0%
CTTAAGAGACCTGTGTCAGG+AGG - chr8_2:64789492-64789511 None:intergenic 50.0%
CTTGCCTTTGATGCCTTTCC+CGG - chr8_2:64789548-64789567 None:intergenic 50.0%
TCAGGCCTTACCAGCAAAGT+AGG + chr8_2:64789667-64789686 Msa1262170:CDS 50.0%
CTTGGCCTACTTTGCTGGTA+AGG - chr8_2:64789675-64789694 None:intergenic 50.0%
GCTTTCTTGGCCTACTTTGC+TGG - chr8_2:64789680-64789699 None:intergenic 50.0%
GAAGGAAATGGCCGTTTAGC+TGG - chr8_2:64789717-64789736 None:intergenic 50.0%
CTTGGGCCCTGAAAATGCAT+TGG - chr8_2:64789793-64789812 None:intergenic 50.0%
CATTGTGAAAGCTCGTCAGC+TGG + chr8_2:64789861-64789880 Msa1262170:CDS 50.0%
! CATTCAGAGGTTTGGGATCC+TGG - chr8_2:64789890-64789909 None:intergenic 50.0%
ACTCCAGTGTGTCCATCCAC+AGG - chr8_2:64788346-64788365 None:intergenic 55.0%
GCAAAGCCGTCGTCTGGTAA+TGG - chr8_2:64788997-64789016 None:intergenic 55.0%
GTCACCATCTGAGAAGACGC+AGG + chr8_2:64789454-64789473 Msa1262170:CDS 55.0%
! AAGCTCGTCAGCTGGTTTCC+AGG + chr8_2:64789869-64789888 Msa1262170:CDS 55.0%
CAGCCTGTGGATGGACACAC+TGG + chr8_2:64788340-64788359 Msa1262170:intron 60.0%
CCTCCCTGCGTCTTCTCAGA+TGG - chr8_2:64789461-64789480 None:intergenic 60.0%
CCATCTGAGAAGACGCAGGG+AGG + chr8_2:64789458-64789477 Msa1262170:CDS 60.0%
CGGAACCGCCCTCATAACCC+AGG - chr8_2:64789143-64789162 None:intergenic 65.0%
CCAGGGGAGGACCGTTCCTC+AGG - chr8_2:64789084-64789103 None:intergenic 70.0%
CCTGAGGAACGGTCCTCCCC+TGG + chr8_2:64789081-64789100 Msa1262170:CDS 70.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 64786906 64789938 64786906 ID=Msa1262170;Name=Msa1262170
chr8_2 mRNA 64786906 64789938 64786906 ID=Msa1262170-mRNA-1;Parent=Msa1262170;Name=Msa1262170-mRNA-1;_AED=0.00;_eAED=0.00;_QI=95|1|0.66|1|1|1|3|0|592
chr8_2 exon 64786906 64787072 64786906 ID=Msa1262170-mRNA-1:exon:20953;Parent=Msa1262170-mRNA-1
chr8_2 exon 64787338 64787448 64787338 ID=Msa1262170-mRNA-1:exon:20954;Parent=Msa1262170-mRNA-1
chr8_2 exon 64788343 64789938 64788343 ID=Msa1262170-mRNA-1:exon:20955;Parent=Msa1262170-mRNA-1
chr8_2 five_prime_UTR 64786906 64787000 64786906 ID=Msa1262170-mRNA-1:five_prime_utr;Parent=Msa1262170-mRNA-1
chr8_2 CDS 64787001 64787072 64787001 ID=Msa1262170-mRNA-1:cds;Parent=Msa1262170-mRNA-1
chr8_2 CDS 64787338 64787448 64787338 ID=Msa1262170-mRNA-1:cds;Parent=Msa1262170-mRNA-1
chr8_2 CDS 64788343 64789938 64788343 ID=Msa1262170-mRNA-1:cds;Parent=Msa1262170-mRNA-1
Gene Sequence

>Msa1262170

ATGGACGAAGATTTTCAAAAGCGTAACACCGATTGCGTTTATTTCTTGGCTTCACCCCTCACTTGCAAGAAGGGTGTAGAATGTGAGTATAGGCACCATGAGATTGCGAGGCTTAACCCAAGGGATTGTTGGTATTGGTTATCTGGGAATTGTCTTAATCCAACTTGTGCTTTTAGACACCCTCCTGTGGATGGACACACTGGAGTGCCATCTGAACCTACACAATCTTCATTGCCTGCAACTGCAAACAAGACAATGGTTCCCTGTTACTTTTTCTTCAATGGGTTTTGCAACAAAGGTAGCAAATGCTCATTTTTGCATGGACCTGATGATAGCTCGCTTACTGTAAAGCCTTTGAAGAATGACACTGTAAAGCCTTTGAAGAATGACACTGTAAAGCCTTTGAAGAATGACTCTACAAAGCCTTTAAAGAATGACTCTGCAAAGCCTTTAAAGAATGACTCTGCAAAGCCTTTAATGAATGACTCTGCAAAACCTTTGAAGATTGACACTGTGAAGCCTTTGAAGAATGACTCTGCAAAACCTTTGAAGATTGACACTGTGAAGCCTTTGAAGAATGACAATGGAAGCATTAATAAACCCAACTTAGAAAATGGAACTGCATCGGGAAATAAAACAAGTGTAGCATCATCCACACCAAGGGATACACATTTTAACCAATCTTTATCTGCTCCAAAAGCTTTGTCCGATATTAAACCTCAGCCTAAGGAAGATCTTCAGCTACCATTACCCGAAAATGTTAAACAGCAAGGTGATTGCTTCAAAATTTCTTCTTTGGACTATAAAGAAGCTGCTGTGACTCGGTCAGACTCTCCATTACCAGACGACGGCTTTGCTCATAACATGTCTCCTTCATGCACTGAGCAGAGTTCAGAGGAGCAAGAAAATAGTCAAGTAGAGCCTGAGGAACGGTCCTCCCCTGGATTTGATGTTCTTGTTCATGATGAATCTGGGAACAACCTGGGTTATGAGGGCGGTTCCGAATATTTGCCAGTGCTTGATATGGATGACCATGAACTGAATGAGCAGTACTTGGGGTATGAATTTAAAAACACAAATGATTACGACACTATGTGCTCAGGCGCTGATATTCTTTATGAACAGAAAACATATGATGATTACAGATGTTTTGATAGGGATTTTACTAGTCCTAGTGAAAGGAAAGTTTGTGGTTATCCCAGAGAGATGGTCTTAGATACTATATTTTCCAGGAAAAGGATTCGAATGTCCACTTCTGAGATGGCTGCTTGTGACTACTCTGACTTAGATCTACGTCACCATCTGAGAAGACGCAGGGAGGTCAATAGTCCTCCTGACACAGGTCTCTTAAGAAGACATGAGTCGTCTTCTTTGATGGTTCAAAACCGGGAAAGGCATCAAAGGCAAGACATTGGTCAGCGGCAAAATAGAAGGTTAACATCACAAGTAGGATTTAGTTCAATCAGAGAAGTTGAAGATCTTTCAATTGCCAACAAGCAAAGGTTATTCAGGCCTTACCAGCAAAGTAGGCCAAGAAAGCACTATAGAGAAAAACCAGCTAAACGGCCATTTCCTTCTTCTAAAGAATCCAGGAAACCAATTGTGAAGCAACAGAGATCTATTCAGAAATCCAATGCATTTTCAGGGCCCAAGACTCTTGCAGAAATAAAAGAAGAGAAGAAAAAGTCTGGTGAAAGTTCACATTGTGAAAGCTCGTCAGCTGGTTTCCAGGATCCCAAACCTCTGAATGAAATTCTCAAAGACAAGACCATAGATTGA

Protein sequence

>Msa1262170

MDEDFQKRNTDCVYFLASPLTCKKGVECEYRHHEIARLNPRDCWYWLSGNCLNPTCAFRHPPVDGHTGVPSEPTQSSLPATANKTMVPCYFFFNGFCNKGSKCSFLHGPDDSSLTVKPLKNDTVKPLKNDTVKPLKNDSTKPLKNDSAKPLKNDSAKPLMNDSAKPLKIDTVKPLKNDSAKPLKIDTVKPLKNDNGSINKPNLENGTASGNKTSVASSTPRDTHFNQSLSAPKALSDIKPQPKEDLQLPLPENVKQQGDCFKISSLDYKEAAVTRSDSPLPDDGFAHNMSPSCTEQSSEEQENSQVEPEERSSPGFDVLVHDESGNNLGYEGGSEYLPVLDMDDHELNEQYLGYEFKNTNDYDTMCSGADILYEQKTYDDYRCFDRDFTSPSERKVCGYPREMVLDTIFSRKRIRMSTSEMAACDYSDLDLRHHLRRRREVNSPPDTGLLRRHESSSLMVQNRERHQRQDIGQRQNRRLTSQVGFSSIREVEDLSIANKQRLFRPYQQSRPRKHYREKPAKRPFPSSKESRKPIVKQQRSIQKSNAFSGPKTLAEIKEEKKKSGESSHCESSSAGFQDPKPLNEILKDKTID*