Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1262170 | XP_003609285.1 | 94.167 | 600 | 21 | 2 | 1 | 592 | 1 | 594 | 0.0 | 1128 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1262170 | sp|Q6K977|C3H19_ORYSJ | 50.000 | 166 | 60 | 5 | 2 | 149 | 12 | 172 | 2.61e-42 | 164 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|---|---|
Msa1262170 | TF | C3H |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1262170 | MtrunA17_Chr4g0063461 | 94.167 | 600 | 21 | 2 | 1 | 592 | 1 | 594 | 0.0 | 1128 |
Msa1262170 | MtrunA17_Chr8g0375251 | 59.504 | 121 | 32 | 1 | 7 | 110 | 117 | 237 | 9.02e-44 | 167 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1262170 | AT2G02160.1 | 53.061 | 147 | 51 | 5 | 2 | 131 | 25 | 170 | 2.92e-40 | 156 |
Find 124 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATTGTTGGTATTGGTTATC+TGG | 0.161820 | 8_2:+64787389 | Msa1262170:CDS |
CACCGATTGCGTTTATTTCT+TGG | 0.184040 | 8_2:+64787027 | Msa1262170:CDS |
TTGCTTCAAAATTTCTTCTT+TGG | 0.213240 | 8_2:+64788936 | Msa1262170:CDS |
CTTGCCTTTGATGCCTTTCC+CGG | 0.220942 | 8_2:-64789545 | None:intergenic |
TTTGCAGAGTCATTCTTTAA+AGG | 0.222829 | 8_2:-64788583 | None:intergenic |
TTTGCAGAGTCATTCTTTAA+AGG | 0.222829 | 8_2:-64788607 | None:intergenic |
TTGCTTCACAATTGGTTTCC+TGG | 0.230232 | 8_2:-64789748 | None:intergenic |
TTACACTAACATTACGATTA+TGG | 0.244673 | 8_2:-64786905 | None:intergenic |
TTAATATCGGACAAAGCTTT+TGG | 0.255089 | 8_2:-64788853 | None:intergenic |
AATAAACCCAACTTAGAAAA+TGG | 0.256208 | 8_2:+64788754 | Msa1262170:CDS |
CATTCAGAGGTTTGGGATCC+TGG | 0.288878 | 8_2:-64789887 | None:intergenic |
GCTTTCTTGGCCTACTTTGC+TGG | 0.293087 | 8_2:-64789677 | None:intergenic |
CCAACAAGCAAAGGTTATTC+AGG | 0.302583 | 8_2:+64789649 | Msa1262170:CDS |
ATTGTCTTGTTTGCAGTTGC+AGG | 0.306173 | 8_2:-64788394 | None:intergenic |
GAGAATTTCATTCAGAGGTT+TGG | 0.311271 | 8_2:-64789895 | None:intergenic |
AGAATTTCATTCAGAGGTTT+GGG | 0.313834 | 8_2:-64789894 | None:intergenic |
TTTGCAGAGTCATTCATTAA+AGG | 0.316622 | 8_2:-64788631 | None:intergenic |
ACATGAGTCGTCTTCTTTGA+TGG | 0.333051 | 8_2:+64789515 | Msa1262170:CDS |
CCTGAATAACCTTTGCTTGT+TGG | 0.334230 | 8_2:-64789649 | None:intergenic |
CTTGGCCTACTTTGCTGGTA+AGG | 0.345619 | 8_2:-64789672 | None:intergenic |
TTTATTTCTGCAAGAGTCTT+GGG | 0.348071 | 8_2:-64789807 | None:intergenic |
GTTCTTGTTCATGATGAATC+TGG | 0.352114 | 8_2:+64789111 | Msa1262170:CDS |
CTTCTTTGATGGTTCAAAAC+CGG | 0.368582 | 8_2:+64789526 | Msa1262170:CDS |
ATATTTGCCAGTGCTTGATA+TGG | 0.371228 | 8_2:+64789164 | Msa1262170:CDS |
GCCATCTCTCACTCAATCTA+TGG | 0.380953 | 8_2:-64789928 | None:intergenic |
AGTACTGCTCATTCAGTTCA+TGG | 0.395523 | 8_2:-64789191 | None:intergenic |
GGCTTAACCCAAGGGATTGT+TGG | 0.404034 | 8_2:+64787375 | Msa1262170:CDS |
CTTAGGCTGAGGTTTAATAT+CGG | 0.404253 | 8_2:-64788866 | None:intergenic |
TGGGAACAACCTGGGTTATG+AGG | 0.406841 | 8_2:+64789131 | Msa1262170:CDS |
AAGCTCGTCAGCTGGTTTCC+AGG | 0.411618 | 8_2:+64789869 | Msa1262170:CDS |
ATCAAGCACTGGCAAATATT+CGG | 0.411769 | 8_2:-64789160 | None:intergenic |
ACCCAAGGGATTGTTGGTAT+TGG | 0.413035 | 8_2:+64787381 | Msa1262170:CDS |
GATCTCTGTTGCTTCACAAT+TGG | 0.413086 | 8_2:-64789756 | None:intergenic |
ATTGTTGGTATTGGTTATCT+GGG | 0.423158 | 8_2:+64787390 | Msa1262170:CDS |
TTAGAAAATGGAACTGCATC+GGG | 0.423544 | 8_2:+64788766 | Msa1262170:CDS |
GAAGGAAATGGCCGTTTAGC+TGG | 0.432071 | 8_2:-64789714 | None:intergenic |
TGAACTGAATGAGCAGTACT+TGG | 0.434200 | 8_2:+64789194 | Msa1262170:CDS |
AGTATCTAAGACCATCTCTC+TGG | 0.436807 | 8_2:-64789358 | None:intergenic |
TTCTTTGATGGTTCAAAACC+GGG | 0.442952 | 8_2:+64789527 | Msa1262170:CDS |
CTTCCATTGTCATTCTTCAA+AGG | 0.447586 | 8_2:-64788727 | None:intergenic |
TTCCTTCTTCTAAAGAATCC+AGG | 0.454352 | 8_2:+64789730 | Msa1262170:CDS |
TTCCTGGATTCTTTAGAAGA+AGG | 0.458511 | 8_2:-64789732 | None:intergenic |
TCAGGCCTTACCAGCAAAGT+AGG | 0.477593 | 8_2:+64789667 | Msa1262170:CDS |
CATTGTGAAAGCTCGTCAGC+TGG | 0.479616 | 8_2:+64789861 | Msa1262170:CDS |
AACCAATACCAACAATCCCT+TGG | 0.486459 | 8_2:-64787383 | None:intergenic |
GCAAAGCCGTCGTCTGGTAA+TGG | 0.491634 | 8_2:-64788994 | None:intergenic |
TGAACAAGAACATCAAATCC+AGG | 0.492763 | 8_2:-64789099 | None:intergenic |
TGATGAATCTGGGAACAACC+TGG | 0.493882 | 8_2:+64789122 | Msa1262170:CDS |
CCACAAACTTTCCTTTCACT+AGG | 0.496086 | 8_2:-64789330 | None:intergenic |
ACCAATACCAACAATCCCTT+GGG | 0.499094 | 8_2:-64787382 | None:intergenic |
TTATGAGCAAAGCCGTCGTC+TGG | 0.499701 | 8_2:-64789000 | None:intergenic |
TTCACCCCTCACTTGCAAGA+AGG | 0.501218 | 8_2:+64787051 | Msa1262170:CDS |
TGATGGTTCAAAACCGGGAA+AGG | 0.501541 | 8_2:+64789532 | Msa1262170:CDS |
GGTAGCTGAAGATCTTCCTT+AGG | 0.509144 | 8_2:-64788883 | None:intergenic |
ACTCCAGTGTGTCCATCCAC+AGG | 0.509244 | 8_2:-64788343 | None:intergenic |
CTTCTTAAGAGACCTGTGTC+AGG | 0.510576 | 8_2:-64789492 | None:intergenic |
CTTGGGCCCTGAAAATGCAT+TGG | 0.511654 | 8_2:-64789790 | None:intergenic |
ACAGTAAGCGAGCTATCATC+AGG | 0.513126 | 8_2:-64788484 | None:intergenic |
GATTCTTTAGAAGAAGGAAA+TGG | 0.514362 | 8_2:-64789726 | None:intergenic |
TTTACAGTGTCATTCTTCAA+AGG | 0.519264 | 8_2:-64788511 | None:intergenic |
TTTACAGTGTCATTCTTCAA+AGG | 0.519264 | 8_2:-64788535 | None:intergenic |
TTTGTAGAGTCATTCTTCAA+AGG | 0.519264 | 8_2:-64788559 | None:intergenic |
GAAGATTGTGTAGGTTCAGA+TGG | 0.524821 | 8_2:-64788367 | None:intergenic |
CTCAGTGTAACGAACGAACA+TGG | 0.525005 | 8_2:+64786982 | Msa1262170:exon |
GAACTGAATGAGCAGTACTT+GGG | 0.530894 | 8_2:+64789195 | Msa1262170:CDS |
TTCTTGTTCATGATGAATCT+GGG | 0.535477 | 8_2:+64789112 | Msa1262170:CDS |
TTCACAGTGTCAATCTTCAA+AGG | 0.538247 | 8_2:-64788655 | None:intergenic |
TTCACAGTGTCAATCTTCAA+AGG | 0.538247 | 8_2:-64788703 | None:intergenic |
AGCCAAGAAATAAACGCAAT+CGG | 0.538661 | 8_2:-64787029 | None:intergenic |
TTTCAATTGCCAACAAGCAA+AGG | 0.539740 | 8_2:+64789640 | Msa1262170:CDS |
ATAATCGTAATGTTAGTGTA+AGG | 0.540304 | 8_2:+64786907 | Msa1262170:five_prime_UTR |
TTGAACCTTCTTGCAAGTGA+GGG | 0.541701 | 8_2:-64787056 | None:intergenic |
TGAAGATCTTCCTTAGGCTG+AGG | 0.541736 | 8_2:-64788877 | None:intergenic |
CTTAGAAAATGGAACTGCAT+CGG | 0.543707 | 8_2:+64788765 | Msa1262170:CDS |
CCTAGTGAAAGGAAAGTTTG+TGG | 0.543844 | 8_2:+64789330 | Msa1262170:CDS |
CGATATTAAACCTCAGCCTA+AGG | 0.549253 | 8_2:+64788867 | Msa1262170:CDS |
TTGGTCAGCGGCAAAATAGA+AGG | 0.550102 | 8_2:+64789571 | Msa1262170:CDS |
TTTGCAGAGTCATTCTTCAA+AGG | 0.551294 | 8_2:-64788679 | None:intergenic |
GGTTAAGCCTCGCAATCTCA+TGG | 0.556438 | 8_2:-64787361 | None:intergenic |
GGGAACAACCTGGGTTATGA+GGG | 0.557547 | 8_2:+64789132 | Msa1262170:CDS |
ATTGAACCTTCTTGCAAGTG+AGG | 0.561506 | 8_2:-64787057 | None:intergenic |
AAAACCGGGAAAGGCATCAA+AGG | 0.564085 | 8_2:+64789541 | Msa1262170:CDS |
ACAAGCAGCCATCTCAGAAG+TGG | 0.566131 | 8_2:-64789409 | None:intergenic |
CGTTCGTTACACTGAGAGAG+AGG | 0.566494 | 8_2:-64786975 | None:intergenic |
TCTTTGAGAATTTCATTCAG+AGG | 0.567578 | 8_2:-64789900 | None:intergenic |
TCGAATGTCCACTTCTGAGA+TGG | 0.567972 | 8_2:+64789401 | Msa1262170:CDS |
ATAAAGAAGCTGCTGTGACT+CGG | 0.570342 | 8_2:+64788962 | Msa1262170:CDS |
GATTACGACACTATGTGCTC+AGG | 0.573085 | 8_2:+64789240 | Msa1262170:CDS |
CAGCCTGTGGATGGACACAC+TGG | 0.576235 | 8_2:+64788340 | Msa1262170:intron |
GTATCTAAGACCATCTCTCT+GGG | 0.580465 | 8_2:-64789357 | None:intergenic |
TGGTCATCCATATCAAGCAC+TGG | 0.581438 | 8_2:-64789171 | None:intergenic |
CCCGAAAATGTTAAACAGCA+AGG | 0.581671 | 8_2:+64788910 | Msa1262170:CDS |
AAATAGTCAAGTAGAGCCTG+AGG | 0.587572 | 8_2:+64789065 | Msa1262170:CDS |
GAACAAGAACATCAAATCCA+GGG | 0.590993 | 8_2:-64789098 | None:intergenic |
ATGCACTGAGCAGAGTTCAG+AGG | 0.592492 | 8_2:+64789035 | Msa1262170:CDS |
GTCAATAGTCCTCCTGACAC+AGG | 0.595790 | 8_2:+64789480 | Msa1262170:CDS |
AGAAGGTTAACATCACAAGT+AGG | 0.600688 | 8_2:+64789588 | Msa1262170:CDS |
TTGTGGTTATCCCAGAGAGA+TGG | 0.602992 | 8_2:+64789347 | Msa1262170:CDS |
GCAGGCAATGAAGATTGTGT+AGG | 0.603065 | 8_2:-64788376 | None:intergenic |
TGAACCTTCTTGCAAGTGAG+GGG | 0.613141 | 8_2:-64787055 | None:intergenic |
GATGAATCTGGGAACAACCT+GGG | 0.613350 | 8_2:+64789123 | Msa1262170:CDS |
AGGGTGTAGAATGTGAGTAT+AGG | 0.616264 | 8_2:+64787336 | Msa1262170:intron |
AGGCATCAAAGGCAAGACAT+TGG | 0.618149 | 8_2:+64789552 | Msa1262170:CDS |
AACAACCTGGGTTATGAGGG+CGG | 0.623566 | 8_2:+64789135 | Msa1262170:CDS |
TGGTTAAAATGTGTATCCCT+TGG | 0.626602 | 8_2:-64788817 | None:intergenic |
AGATTGCGAGGCTTAACCCA+AGG | 0.626610 | 8_2:+64787366 | Msa1262170:CDS |
GGGTGTCTAAAAGCACAAGT+TGG | 0.629066 | 8_2:-64787425 | None:intergenic |
TGTAGCATCATCCACACCAA+GGG | 0.637768 | 8_2:+64788801 | Msa1262170:CDS |
GATTGCGAGGCTTAACCCAA+GGG | 0.640036 | 8_2:+64787367 | Msa1262170:CDS |
AACTGAATGAGCAGTACTTG+GGG | 0.640126 | 8_2:+64789196 | Msa1262170:CDS |
GTCACCATCTGAGAAGACGC+AGG | 0.644495 | 8_2:+64789454 | Msa1262170:CDS |
GTCAAGTAGAGCCTGAGGAA+CGG | 0.645293 | 8_2:+64789070 | Msa1262170:CDS |
AAGCCTTTGAAGAATGACAA+TGG | 0.648926 | 8_2:+64788724 | Msa1262170:CDS |
TCACCATCTGAGAAGACGCA+GGG | 0.650947 | 8_2:+64789455 | Msa1262170:CDS |
CTTAAGAGACCTGTGTCAGG+AGG | 0.654168 | 8_2:-64789489 | None:intergenic |
ATAGGCACCATGAGATTGCG+AGG | 0.657532 | 8_2:+64787354 | Msa1262170:CDS |
TGCAACTGCAAACAAGACAA+TGG | 0.662371 | 8_2:+64788396 | Msa1262170:CDS |
AAAATGTGTATCCCTTGGTG+TGG | 0.666851 | 8_2:-64788812 | None:intergenic |
GACTCTCCATTACCAGACGA+CGG | 0.668142 | 8_2:+64788988 | Msa1262170:CDS |
GTGTAGCATCATCCACACCA+AGG | 0.671419 | 8_2:+64788800 | Msa1262170:CDS |
AACAAGAACATCAAATCCAG+GGG | 0.675043 | 8_2:-64789097 | None:intergenic |
AAGAACATCAAATCCAGGGG+AGG | 0.679312 | 8_2:-64789094 | None:intergenic |
AAAGGCAAGACATTGGTCAG+CGG | 0.696430 | 8_2:+64789559 | Msa1262170:CDS |
CCATCTGAGAAGACGCAGGG+AGG | 0.719477 | 8_2:+64789458 | Msa1262170:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATGGAATAAATATAATTTTT+TGG | + | chr8_2:64787862-64787881 | Msa1262170:intron | 10.0% |
!! | AAAAAAATGAATATGAAATT+TGG | - | chr8_2:64788244-64788263 | None:intergenic | 10.0% |
!!! | AATTCTGTTTTTGTTTTTAA+TGG | + | chr8_2:64787260-64787279 | Msa1262170:intron | 15.0% |
!!! | TTGAAAATGTTATAATCTTT+TGG | + | chr8_2:64787522-64787541 | Msa1262170:intron | 15.0% |
!! | TATATCAGTAAAAAAAACAT+TGG | + | chr8_2:64787615-64787634 | Msa1262170:intron | 15.0% |
!! | AAAATATCAAATTAATGAAC+AGG | + | chr8_2:64788143-64788162 | Msa1262170:intron | 15.0% |
!!! | TAAATTTTTGTTCTGTAAGT+TGG | + | chr8_2:64787770-64787789 | Msa1262170:intron | 20.0% |
!! | TTATATTTATTCCATTGACA+AGG | - | chr8_2:64787857-64787876 | None:intergenic | 20.0% |
!! | TGTTTCTTAAAATATCAAGT+TGG | + | chr8_2:64787913-64787932 | Msa1262170:intron | 20.0% |
!!! | TTTTATATATTGTTTGCATC+TGG | + | chr8_2:64788049-64788068 | Msa1262170:intron | 20.0% |
!! | AAATGAATATGAAATTTGGA+GGG | - | chr8_2:64788240-64788259 | None:intergenic | 20.0% |
!! | AAAATGAATATGAAATTTGG+AGG | - | chr8_2:64788241-64788260 | None:intergenic | 20.0% |
! | ATAATCGTAATGTTAGTGTA+AGG | + | chr8_2:64786907-64786926 | Msa1262170:five_prime_UTR | 25.0% |
! | TACTGATATACAATACATCA+AGG | - | chr8_2:64787605-64787624 | None:intergenic | 25.0% |
! | TAAGAAACATTACAAATGTG+AGG | - | chr8_2:64787649-64787668 | None:intergenic | 25.0% |
! | GAACAAAAATTTACAAGAGA+CGG | - | chr8_2:64787763-64787782 | None:intergenic | 25.0% |
! | TTCATCCAAGAAATCAATTA+AGG | - | chr8_2:64788108-64788127 | None:intergenic | 25.0% |
!! | AATTGATTTCTTGGATGAAT+AGG | + | chr8_2:64788109-64788128 | Msa1262170:intron | 25.0% |
! | AATGAATATGAAATTTGGAG+GGG | - | chr8_2:64788239-64788258 | None:intergenic | 25.0% |
! | CAGATAGATTAATACTAAAC+AGG | - | chr8_2:64788275-64788294 | None:intergenic | 25.0% |
! | AATAAACCCAACTTAGAAAA+TGG | + | chr8_2:64788754-64788773 | Msa1262170:CDS | 25.0% |
! | TTGCTTCAAAATTTCTTCTT+TGG | + | chr8_2:64788936-64788955 | Msa1262170:CDS | 25.0% |
!!! | ATGATTACAGATGTTTTGAT+AGG | + | chr8_2:64789295-64789314 | Msa1262170:CDS | 25.0% |
!!! | TGATTACAGATGTTTTGATA+GGG | + | chr8_2:64789296-64789315 | Msa1262170:CDS | 25.0% |
!! | TCTTAGATACTATATTTTCC+AGG | + | chr8_2:64789370-64789389 | Msa1262170:CDS | 25.0% |
!! | ATACTATATTTTCCAGGAAA+AGG | + | chr8_2:64789376-64789395 | Msa1262170:CDS | 25.0% |
TCGAAAATGTGACGAAAATA+GGG | - | chr8_2:64787154-64787173 | None:intergenic | 30.0% | |
ATCGAAAATGTGACGAAAAT+AGG | - | chr8_2:64787155-64787174 | None:intergenic | 30.0% | |
GAAAATGTAACCTAACTGAA+CGG | - | chr8_2:64787201-64787220 | None:intergenic | 30.0% | |
CCTGCAAACAAAATAAACAA+CGG | - | chr8_2:64787319-64787338 | None:intergenic | 30.0% | |
!!! | CGTTGTTTATTTTGTTTGCA+GGG | + | chr8_2:64787317-64787336 | Msa1262170:intron | 30.0% |
!! | ATTGTTGGTATTGGTTATCT+GGG | + | chr8_2:64787390-64787409 | Msa1262170:CDS | 30.0% |
!!! | GTACTTTTTTTCGCTTATGT+GGG | + | chr8_2:64787490-64787509 | Msa1262170:intron | 30.0% |
!!! | TCTTTTGGACTTAATTTGCA+CGG | + | chr8_2:64787537-64787556 | Msa1262170:intron | 30.0% |
!! | ATTTTTGTTCTGTAAGTTGG+TGG | + | chr8_2:64787773-64787792 | Msa1262170:intron | 30.0% |
AAATCATCAAAACACTTGCA+AGG | - | chr8_2:64788080-64788099 | None:intergenic | 30.0% | |
!!! | TGCAAGTGTTTTGATGATTT+TGG | + | chr8_2:64788080-64788099 | Msa1262170:intron | 30.0% |
! | TGGTTCCTTAATTGATTTCT+TGG | + | chr8_2:64788100-64788119 | Msa1262170:intron | 30.0% |
ATGAATATGAAATTTGGAGG+GGG | - | chr8_2:64788238-64788257 | None:intergenic | 30.0% | |
AAAATTAGATGAAAGTGACG+AGG | - | chr8_2:64788309-64788328 | None:intergenic | 30.0% | |
CCATTGAAGAAAAAGTAACA+GGG | - | chr8_2:64788424-64788443 | None:intergenic | 30.0% | |
!!! | CCTGTTACTTTTTCTTCAAT+GGG | + | chr8_2:64788422-64788441 | Msa1262170:CDS | 30.0% |
! | TTTACAGTGTCATTCTTCAA+AGG | - | chr8_2:64788514-64788533 | None:intergenic | 30.0% |
! | TTTACAGTGTCATTCTTCAA+AGG | - | chr8_2:64788514-64788533 | None:intergenic | 30.0% |
TTTGTAGAGTCATTCTTCAA+AGG | - | chr8_2:64788562-64788581 | None:intergenic | 30.0% | |
TTTGCAGAGTCATTCTTTAA+AGG | - | chr8_2:64788586-64788605 | None:intergenic | 30.0% | |
TTTGCAGAGTCATTCTTTAA+AGG | - | chr8_2:64788586-64788605 | None:intergenic | 30.0% | |
TTTGCAGAGTCATTCATTAA+AGG | - | chr8_2:64788634-64788653 | None:intergenic | 30.0% | |
! | TTAATATCGGACAAAGCTTT+TGG | - | chr8_2:64788856-64788875 | None:intergenic | 30.0% |
!!! | TGTTTAACATTTTCGGGTAA+TGG | - | chr8_2:64788907-64788926 | None:intergenic | 30.0% |
!!! | ACCTTGCTGTTTAACATTTT+CGG | - | chr8_2:64788914-64788933 | None:intergenic | 30.0% |
TTCTTGTTCATGATGAATCT+GGG | + | chr8_2:64789112-64789131 | Msa1262170:CDS | 30.0% | |
! | ATTTTACTAGTCCTAGTGAA+AGG | + | chr8_2:64789319-64789338 | Msa1262170:CDS | 30.0% |
! | TTTTCTCTATAGTGCTTTCT+TGG | - | chr8_2:64789693-64789712 | None:intergenic | 30.0% |
ATAGAGAAAAACCAGCTAAA+CGG | + | chr8_2:64789703-64789722 | Msa1262170:CDS | 30.0% | |
! | GATTCTTTAGAAGAAGGAAA+TGG | - | chr8_2:64789729-64789748 | None:intergenic | 30.0% |
! | AGAAATCCAATGCATTTTCA+GGG | + | chr8_2:64789784-64789803 | Msa1262170:CDS | 30.0% |
!! | TTTATTTCTGCAAGAGTCTT+GGG | - | chr8_2:64789810-64789829 | None:intergenic | 30.0% |
!!! | TTTTATTTCTGCAAGAGTCT+TGG | - | chr8_2:64789811-64789830 | None:intergenic | 30.0% |
AAAGAAGAGAAGAAAAAGTC+TGG | + | chr8_2:64789828-64789847 | Msa1262170:CDS | 30.0% | |
AGAATTTCATTCAGAGGTTT+GGG | - | chr8_2:64789897-64789916 | None:intergenic | 30.0% | |
! | TCTTTGAGAATTTCATTCAG+AGG | - | chr8_2:64789903-64789922 | None:intergenic | 30.0% |
AGCCAAGAAATAAACGCAAT+CGG | - | chr8_2:64787032-64787051 | None:intergenic | 35.0% | |
!!! | CCGTTGTTTATTTTGTTTGC+AGG | + | chr8_2:64787316-64787335 | Msa1262170:intron | 35.0% |
!! | GATTGTTGGTATTGGTTATC+TGG | + | chr8_2:64787389-64787408 | Msa1262170:CDS | 35.0% |
!!! | GGTACTTTTTTTCGCTTATG+TGG | + | chr8_2:64787489-64787508 | Msa1262170:intron | 35.0% |
!! | TTAATTTGCACGGTTAGGTT+AGG | + | chr8_2:64787547-64787566 | Msa1262170:intron | 35.0% |
CATTACAAATGTGAGGACTA+AGG | - | chr8_2:64787642-64787661 | None:intergenic | 35.0% | |
TGAACGCTTCTGTGTTTAAA+TGG | + | chr8_2:64787680-64787699 | Msa1262170:intron | 35.0% | |
ACTATAGGTAAAATGCAGCT+CGG | - | chr8_2:64787706-64787725 | None:intergenic | 35.0% | |
! | TTTTGTCCAATTGTTGAGTC+AGG | - | chr8_2:64788014-64788033 | None:intergenic | 35.0% |
! | TTTGTAATTTTGTCAGCCTG+TGG | + | chr8_2:64788327-64788346 | Msa1262170:intron | 35.0% |
!!! | CCCTGTTACTTTTTCTTCAA+TGG | + | chr8_2:64788421-64788440 | Msa1262170:CDS | 35.0% |
CCCATTGAAGAAAAAGTAAC+AGG | - | chr8_2:64788425-64788444 | None:intergenic | 35.0% | |
!! | TTCAATGGGTTTTGCAACAA+AGG | + | chr8_2:64788436-64788455 | Msa1262170:CDS | 35.0% |
!! | AGCAAATGCTCATTTTTGCA+TGG | + | chr8_2:64788460-64788479 | Msa1262170:CDS | 35.0% |
TTCACAGTGTCAATCTTCAA+AGG | - | chr8_2:64788658-64788677 | None:intergenic | 35.0% | |
TTTGCAGAGTCATTCTTCAA+AGG | - | chr8_2:64788682-64788701 | None:intergenic | 35.0% | |
TTCACAGTGTCAATCTTCAA+AGG | - | chr8_2:64788658-64788677 | None:intergenic | 35.0% | |
! | AAGCCTTTGAAGAATGACAA+TGG | + | chr8_2:64788724-64788743 | Msa1262170:CDS | 35.0% |
CTTCCATTGTCATTCTTCAA+AGG | - | chr8_2:64788730-64788749 | None:intergenic | 35.0% | |
! | GCAGTTCCATTTTCTAAGTT+GGG | - | chr8_2:64788763-64788782 | None:intergenic | 35.0% |
! | TGCAGTTCCATTTTCTAAGT+TGG | - | chr8_2:64788764-64788783 | None:intergenic | 35.0% |
CTTAGAAAATGGAACTGCAT+CGG | + | chr8_2:64788765-64788784 | Msa1262170:CDS | 35.0% | |
TTAGAAAATGGAACTGCATC+GGG | + | chr8_2:64788766-64788785 | Msa1262170:CDS | 35.0% | |
TGGTTAAAATGTGTATCCCT+TGG | - | chr8_2:64788820-64788839 | None:intergenic | 35.0% | |
!!! | CTTTTGGAGCAGATAAAGAT+TGG | - | chr8_2:64788840-64788859 | None:intergenic | 35.0% |
CTTAGGCTGAGGTTTAATAT+CGG | - | chr8_2:64788869-64788888 | None:intergenic | 35.0% | |
!!! | CCTTGCTGTTTAACATTTTC+GGG | - | chr8_2:64788913-64788932 | None:intergenic | 35.0% |
AACAAGAACATCAAATCCAG+GGG | - | chr8_2:64789100-64789119 | None:intergenic | 35.0% | |
GAACAAGAACATCAAATCCA+GGG | - | chr8_2:64789101-64789120 | None:intergenic | 35.0% | |
TGAACAAGAACATCAAATCC+AGG | - | chr8_2:64789102-64789121 | None:intergenic | 35.0% | |
GTTCTTGTTCATGATGAATC+TGG | + | chr8_2:64789111-64789130 | Msa1262170:CDS | 35.0% | |
!! | ATCAAGCACTGGCAAATATT+CGG | - | chr8_2:64789163-64789182 | None:intergenic | 35.0% |
ATATTTGCCAGTGCTTGATA+TGG | + | chr8_2:64789164-64789183 | Msa1262170:CDS | 35.0% | |
! | CTTCTTTGATGGTTCAAAAC+CGG | + | chr8_2:64789526-64789545 | Msa1262170:CDS | 35.0% |
! | TTCTTTGATGGTTCAAAACC+GGG | + | chr8_2:64789527-64789546 | Msa1262170:CDS | 35.0% |
AGAAGGTTAACATCACAAGT+AGG | + | chr8_2:64789588-64789607 | Msa1262170:CDS | 35.0% | |
TTTCAATTGCCAACAAGCAA+AGG | + | chr8_2:64789640-64789659 | Msa1262170:CDS | 35.0% | |
! | TTCCTTCTTCTAAAGAATCC+AGG | + | chr8_2:64789730-64789749 | Msa1262170:CDS | 35.0% |
! | TTCCTGGATTCTTTAGAAGA+AGG | - | chr8_2:64789735-64789754 | None:intergenic | 35.0% |
! | CAGAAATCCAATGCATTTTC+AGG | + | chr8_2:64789783-64789802 | Msa1262170:CDS | 35.0% |
GAGAATTTCATTCAGAGGTT+TGG | - | chr8_2:64789898-64789917 | None:intergenic | 35.0% | |
! | CACCGATTGCGTTTATTTCT+TGG | + | chr8_2:64787027-64787046 | Msa1262170:CDS | 40.0% |
TTGAACCTTCTTGCAAGTGA+GGG | - | chr8_2:64787059-64787078 | None:intergenic | 40.0% | |
ATTGAACCTTCTTGCAAGTG+AGG | - | chr8_2:64787060-64787079 | None:intergenic | 40.0% | |
ATTGAATTCGCGATTGCGAA+GGG | - | chr8_2:64787090-64787109 | None:intergenic | 40.0% | |
AATTGAATTCGCGATTGCGA+AGG | - | chr8_2:64787091-64787110 | None:intergenic | 40.0% | |
!! | GCTTTTGTTTCCGTTCAGTT+AGG | + | chr8_2:64787188-64787207 | Msa1262170:intron | 40.0% |
AGGGTGTAGAATGTGAGTAT+AGG | + | chr8_2:64787336-64787355 | Msa1262170:intron | 40.0% | |
ACCAATACCAACAATCCCTT+GGG | - | chr8_2:64787385-64787404 | None:intergenic | 40.0% | |
AACCAATACCAACAATCCCT+TGG | - | chr8_2:64787386-64787405 | None:intergenic | 40.0% | |
GGCACAATGAAAAACTCACA+GGG | - | chr8_2:64787448-64787467 | None:intergenic | 40.0% | |
AGGCACAATGAAAAACTCAC+AGG | - | chr8_2:64787449-64787468 | None:intergenic | 40.0% | |
! | AATCGAGAAGTGCAAATGCA+AGG | - | chr8_2:64787469-64787488 | None:intergenic | 40.0% |
TTGCATTTGCACTTCTCGAT+TGG | + | chr8_2:64787468-64787487 | Msa1262170:intron | 40.0% | |
!! | TGGACTTAATTTGCACGGTT+AGG | + | chr8_2:64787542-64787561 | Msa1262170:intron | 40.0% |
! | ACGGTTAGGTTAGGTTTTTG+TGG | + | chr8_2:64787556-64787575 | Msa1262170:intron | 40.0% |
GGTTCGATGTGTCAGATTAA+AGG | + | chr8_2:64787577-64787596 | Msa1262170:intron | 40.0% | |
!!! | AGACACTTTTTCCATCACAC+AGG | - | chr8_2:64787732-64787751 | None:intergenic | 40.0% |
TGCATGTACTTCCTTGTCAA+TGG | + | chr8_2:64787843-64787862 | Msa1262170:intron | 40.0% | |
TCCAATTGTTGAGTCAGGAT+GGG | - | chr8_2:64788009-64788028 | None:intergenic | 40.0% | |
! | TAATTTTGTCAGCCTGTGGA+TGG | + | chr8_2:64788331-64788350 | Msa1262170:intron | 40.0% |
GAAGATTGTGTAGGTTCAGA+TGG | - | chr8_2:64788370-64788389 | None:intergenic | 40.0% | |
!! | ATTGTCTTGTTTGCAGTTGC+AGG | - | chr8_2:64788397-64788416 | None:intergenic | 40.0% |
TGCAACTGCAAACAAGACAA+TGG | + | chr8_2:64788396-64788415 | Msa1262170:CDS | 40.0% | |
AAAATGTGTATCCCTTGGTG+TGG | - | chr8_2:64788815-64788834 | None:intergenic | 40.0% | |
CGATATTAAACCTCAGCCTA+AGG | + | chr8_2:64788867-64788886 | Msa1262170:CDS | 40.0% | |
CCCGAAAATGTTAAACAGCA+AGG | + | chr8_2:64788910-64788929 | Msa1262170:CDS | 40.0% | |
ATAAAGAAGCTGCTGTGACT+CGG | + | chr8_2:64788962-64788981 | Msa1262170:CDS | 40.0% | |
AAATAGTCAAGTAGAGCCTG+AGG | + | chr8_2:64789065-64789084 | Msa1262170:CDS | 40.0% | |
AGTACTGCTCATTCAGTTCA+TGG | - | chr8_2:64789194-64789213 | None:intergenic | 40.0% | |
TGAACTGAATGAGCAGTACT+TGG | + | chr8_2:64789194-64789213 | Msa1262170:CDS | 40.0% | |
GAACTGAATGAGCAGTACTT+GGG | + | chr8_2:64789195-64789214 | Msa1262170:CDS | 40.0% | |
AACTGAATGAGCAGTACTTG+GGG | + | chr8_2:64789196-64789215 | Msa1262170:CDS | 40.0% | |
CCACAAACTTTCCTTTCACT+AGG | - | chr8_2:64789333-64789352 | None:intergenic | 40.0% | |
CCTAGTGAAAGGAAAGTTTG+TGG | + | chr8_2:64789330-64789349 | Msa1262170:CDS | 40.0% | |
! | GTATCTAAGACCATCTCTCT+GGG | - | chr8_2:64789360-64789379 | None:intergenic | 40.0% |
! | AGTATCTAAGACCATCTCTC+TGG | - | chr8_2:64789361-64789380 | None:intergenic | 40.0% |
ACATGAGTCGTCTTCTTTGA+TGG | + | chr8_2:64789515-64789534 | Msa1262170:CDS | 40.0% | |
CCTGAATAACCTTTGCTTGT+TGG | - | chr8_2:64789652-64789671 | None:intergenic | 40.0% | |
CCAACAAGCAAAGGTTATTC+AGG | + | chr8_2:64789649-64789668 | Msa1262170:CDS | 40.0% | |
! | TTGCTTCACAATTGGTTTCC+TGG | - | chr8_2:64789751-64789770 | None:intergenic | 40.0% |
! | GATCTCTGTTGCTTCACAAT+TGG | - | chr8_2:64789759-64789778 | None:intergenic | 40.0% |
CTCAGTGTAACGAACGAACA+TGG | + | chr8_2:64786982-64787001 | Msa1262170:exon | 45.0% | |
TGAACCTTCTTGCAAGTGAG+GGG | - | chr8_2:64787058-64787077 | None:intergenic | 45.0% | |
ACCCAAGGGATTGTTGGTAT+TGG | + | chr8_2:64787381-64787400 | Msa1262170:CDS | 45.0% | |
! | GGGTGTCTAAAAGCACAAGT+TGG | - | chr8_2:64787428-64787447 | None:intergenic | 45.0% |
CCATCACACAGGTTCACTAT+AGG | - | chr8_2:64787721-64787740 | None:intergenic | 45.0% | |
CCTATAGTGAACCTGTGTGA+TGG | + | chr8_2:64787718-64787737 | Msa1262170:intron | 45.0% | |
ACCCATCCTGACTCAACAAT+TGG | + | chr8_2:64788005-64788024 | Msa1262170:intron | 45.0% | |
GTCCAATTGTTGAGTCAGGA+TGG | - | chr8_2:64788010-64788029 | None:intergenic | 45.0% | |
ATGAAATTTGGAGGGGGAGT+GGG | - | chr8_2:64788232-64788251 | None:intergenic | 45.0% | |
TATGAAATTTGGAGGGGGAG+TGG | - | chr8_2:64788233-64788252 | None:intergenic | 45.0% | |
GCAGGCAATGAAGATTGTGT+AGG | - | chr8_2:64788379-64788398 | None:intergenic | 45.0% | |
ACAGTAAGCGAGCTATCATC+AGG | - | chr8_2:64788487-64788506 | None:intergenic | 45.0% | |
TGTAGCATCATCCACACCAA+GGG | + | chr8_2:64788801-64788820 | Msa1262170:CDS | 45.0% | |
TGAAGATCTTCCTTAGGCTG+AGG | - | chr8_2:64788880-64788899 | None:intergenic | 45.0% | |
GGTAGCTGAAGATCTTCCTT+AGG | - | chr8_2:64788886-64788905 | None:intergenic | 45.0% | |
AAGAACATCAAATCCAGGGG+AGG | - | chr8_2:64789097-64789116 | None:intergenic | 45.0% | |
TGATGAATCTGGGAACAACC+TGG | + | chr8_2:64789122-64789141 | Msa1262170:CDS | 45.0% | |
GATGAATCTGGGAACAACCT+GGG | + | chr8_2:64789123-64789142 | Msa1262170:CDS | 45.0% | |
TGGTCATCCATATCAAGCAC+TGG | - | chr8_2:64789174-64789193 | None:intergenic | 45.0% | |
GATTACGACACTATGTGCTC+AGG | + | chr8_2:64789240-64789259 | Msa1262170:CDS | 45.0% | |
TTGTGGTTATCCCAGAGAGA+TGG | + | chr8_2:64789347-64789366 | Msa1262170:CDS | 45.0% | |
! | GGACATTCGAATCCTTTTCC+TGG | - | chr8_2:64789391-64789410 | None:intergenic | 45.0% |
! | TCGAATGTCCACTTCTGAGA+TGG | + | chr8_2:64789401-64789420 | Msa1262170:CDS | 45.0% |
CTTCTTAAGAGACCTGTGTC+AGG | - | chr8_2:64789495-64789514 | None:intergenic | 45.0% | |
TGATGGTTCAAAACCGGGAA+AGG | + | chr8_2:64789532-64789551 | Msa1262170:CDS | 45.0% | |
!! | AAAACCGGGAAAGGCATCAA+AGG | + | chr8_2:64789541-64789560 | Msa1262170:CDS | 45.0% |
AGGCATCAAAGGCAAGACAT+TGG | + | chr8_2:64789552-64789571 | Msa1262170:CDS | 45.0% | |
AAAGGCAAGACATTGGTCAG+CGG | + | chr8_2:64789559-64789578 | Msa1262170:CDS | 45.0% | |
TTGGTCAGCGGCAAAATAGA+AGG | + | chr8_2:64789571-64789590 | Msa1262170:CDS | 45.0% | |
CGTTCGTTACACTGAGAGAG+AGG | - | chr8_2:64786978-64786997 | None:intergenic | 50.0% | |
TTCACCCCTCACTTGCAAGA+AGG | + | chr8_2:64787051-64787070 | Msa1262170:CDS | 50.0% | |
ATAGGCACCATGAGATTGCG+AGG | + | chr8_2:64787354-64787373 | Msa1262170:CDS | 50.0% | |
GGTTAAGCCTCGCAATCTCA+TGG | - | chr8_2:64787364-64787383 | None:intergenic | 50.0% | |
AGATTGCGAGGCTTAACCCA+AGG | + | chr8_2:64787366-64787385 | Msa1262170:CDS | 50.0% | |
GATTGCGAGGCTTAACCCAA+GGG | + | chr8_2:64787367-64787386 | Msa1262170:CDS | 50.0% | |
GGCTTAACCCAAGGGATTGT+TGG | + | chr8_2:64787375-64787394 | Msa1262170:CDS | 50.0% | |
!! | GTTCTGTAAGTTGGTGGCGA+TGG | + | chr8_2:64787779-64787798 | Msa1262170:intron | 50.0% |
TGAAATTTGGAGGGGGAGTG+GGG | - | chr8_2:64788231-64788250 | None:intergenic | 50.0% | |
GTGTAGCATCATCCACACCA+AGG | + | chr8_2:64788800-64788819 | Msa1262170:CDS | 50.0% | |
GACTCTCCATTACCAGACGA+CGG | + | chr8_2:64788988-64789007 | Msa1262170:CDS | 50.0% | |
TTATGAGCAAAGCCGTCGTC+TGG | - | chr8_2:64789003-64789022 | None:intergenic | 50.0% | |
GAACTCTGCTCAGTGCATGA+AGG | - | chr8_2:64789033-64789052 | None:intergenic | 50.0% | |
ATGCACTGAGCAGAGTTCAG+AGG | + | chr8_2:64789035-64789054 | Msa1262170:CDS | 50.0% | |
GTCAAGTAGAGCCTGAGGAA+CGG | + | chr8_2:64789070-64789089 | Msa1262170:CDS | 50.0% | |
TGGGAACAACCTGGGTTATG+AGG | + | chr8_2:64789131-64789150 | Msa1262170:CDS | 50.0% | |
GGGAACAACCTGGGTTATGA+GGG | + | chr8_2:64789132-64789151 | Msa1262170:CDS | 50.0% | |
AACAACCTGGGTTATGAGGG+CGG | + | chr8_2:64789135-64789154 | Msa1262170:CDS | 50.0% | |
ACAAGCAGCCATCTCAGAAG+TGG | - | chr8_2:64789412-64789431 | None:intergenic | 50.0% | |
TCACCATCTGAGAAGACGCA+GGG | + | chr8_2:64789455-64789474 | Msa1262170:CDS | 50.0% | |
GTCAATAGTCCTCCTGACAC+AGG | + | chr8_2:64789480-64789499 | Msa1262170:CDS | 50.0% | |
CTTAAGAGACCTGTGTCAGG+AGG | - | chr8_2:64789492-64789511 | None:intergenic | 50.0% | |
CTTGCCTTTGATGCCTTTCC+CGG | - | chr8_2:64789548-64789567 | None:intergenic | 50.0% | |
TCAGGCCTTACCAGCAAAGT+AGG | + | chr8_2:64789667-64789686 | Msa1262170:CDS | 50.0% | |
CTTGGCCTACTTTGCTGGTA+AGG | - | chr8_2:64789675-64789694 | None:intergenic | 50.0% | |
GCTTTCTTGGCCTACTTTGC+TGG | - | chr8_2:64789680-64789699 | None:intergenic | 50.0% | |
GAAGGAAATGGCCGTTTAGC+TGG | - | chr8_2:64789717-64789736 | None:intergenic | 50.0% | |
CTTGGGCCCTGAAAATGCAT+TGG | - | chr8_2:64789793-64789812 | None:intergenic | 50.0% | |
CATTGTGAAAGCTCGTCAGC+TGG | + | chr8_2:64789861-64789880 | Msa1262170:CDS | 50.0% | |
! | CATTCAGAGGTTTGGGATCC+TGG | - | chr8_2:64789890-64789909 | None:intergenic | 50.0% |
ACTCCAGTGTGTCCATCCAC+AGG | - | chr8_2:64788346-64788365 | None:intergenic | 55.0% | |
GCAAAGCCGTCGTCTGGTAA+TGG | - | chr8_2:64788997-64789016 | None:intergenic | 55.0% | |
GTCACCATCTGAGAAGACGC+AGG | + | chr8_2:64789454-64789473 | Msa1262170:CDS | 55.0% | |
! | AAGCTCGTCAGCTGGTTTCC+AGG | + | chr8_2:64789869-64789888 | Msa1262170:CDS | 55.0% |
CAGCCTGTGGATGGACACAC+TGG | + | chr8_2:64788340-64788359 | Msa1262170:intron | 60.0% | |
CCTCCCTGCGTCTTCTCAGA+TGG | - | chr8_2:64789461-64789480 | None:intergenic | 60.0% | |
CCATCTGAGAAGACGCAGGG+AGG | + | chr8_2:64789458-64789477 | Msa1262170:CDS | 60.0% | |
CGGAACCGCCCTCATAACCC+AGG | - | chr8_2:64789143-64789162 | None:intergenic | 65.0% | |
CCAGGGGAGGACCGTTCCTC+AGG | - | chr8_2:64789084-64789103 | None:intergenic | 70.0% | |
CCTGAGGAACGGTCCTCCCC+TGG | + | chr8_2:64789081-64789100 | Msa1262170:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_2 | gene | 64786906 | 64789938 | 64786906 | ID=Msa1262170;Name=Msa1262170 |
chr8_2 | mRNA | 64786906 | 64789938 | 64786906 | ID=Msa1262170-mRNA-1;Parent=Msa1262170;Name=Msa1262170-mRNA-1;_AED=0.00;_eAED=0.00;_QI=95|1|0.66|1|1|1|3|0|592 |
chr8_2 | exon | 64786906 | 64787072 | 64786906 | ID=Msa1262170-mRNA-1:exon:20953;Parent=Msa1262170-mRNA-1 |
chr8_2 | exon | 64787338 | 64787448 | 64787338 | ID=Msa1262170-mRNA-1:exon:20954;Parent=Msa1262170-mRNA-1 |
chr8_2 | exon | 64788343 | 64789938 | 64788343 | ID=Msa1262170-mRNA-1:exon:20955;Parent=Msa1262170-mRNA-1 |
chr8_2 | five_prime_UTR | 64786906 | 64787000 | 64786906 | ID=Msa1262170-mRNA-1:five_prime_utr;Parent=Msa1262170-mRNA-1 |
chr8_2 | CDS | 64787001 | 64787072 | 64787001 | ID=Msa1262170-mRNA-1:cds;Parent=Msa1262170-mRNA-1 |
chr8_2 | CDS | 64787338 | 64787448 | 64787338 | ID=Msa1262170-mRNA-1:cds;Parent=Msa1262170-mRNA-1 |
chr8_2 | CDS | 64788343 | 64789938 | 64788343 | ID=Msa1262170-mRNA-1:cds;Parent=Msa1262170-mRNA-1 |
Gene Sequence |
Protein sequence |