Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1267550 | KEH31034.1 | 83.838 | 297 | 25 | 2 | 1 | 297 | 1 | 274 | 5.17e-167 | 474 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1267550 | sp|Q1PFR7|LEC2_ARATH | 46.667 | 105 | 55 | 1 | 98 | 201 | 163 | 267 | 6.97e-24 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1267550 | A0A072UMM3 | 83.838 | 297 | 25 | 2 | 1 | 297 | 1 | 274 | 2.47e-167 | 474 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1267550 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1267550 | MtrunA17_Chr4g0047031 | 83.838 | 297 | 25 | 2 | 1 | 297 | 73 | 346 | 5.19e-171 | 477 |
| Msa1267550 | MtrunA17_Chr7g0251891 | 33.918 | 171 | 98 | 6 | 98 | 265 | 9 | 167 | 1.67e-19 | 84.7 |
| Msa1267550 | MtrunA17_Chr7g0237841 | 42.105 | 95 | 54 | 1 | 100 | 193 | 618 | 712 | 6.65e-19 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1267550 | AT1G28300.1 | 46.667 | 105 | 55 | 1 | 98 | 201 | 163 | 267 | 7.09e-25 | 102 |
| Msa1267550 | AT3G24650.1 | 34.783 | 161 | 94 | 4 | 100 | 256 | 566 | 719 | 3.32e-19 | 88.2 |
| Msa1267550 | AT3G26790.1 | 35.294 | 119 | 75 | 2 | 98 | 214 | 84 | 202 | 4.99e-19 | 85.9 |
Find 61 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCAGTCGACTAATAATT+TGG | 0.175655 | 8_2:+72879783 | Msa1267550:CDS |
| TTCCATAGGTATTGGATTAA+TGG | 0.179633 | 8_2:+72879042 | Msa1267550:intron |
| TTGCAGTATTATTGGTTTCT+TGG | 0.218735 | 8_2:-72879834 | None:intergenic |
| TACTGCAATGCCACCTATAT+TGG | 0.238790 | 8_2:+72879849 | Msa1267550:CDS |
| AAACATGTGGAGTTCTTTCT+TGG | 0.273984 | 8_2:-72878237 | None:intergenic |
| AGGTGGCATTGCAGTATTAT+TGG | 0.274469 | 8_2:-72879842 | None:intergenic |
| TGCAGTATTATTGGTTTCTT+GGG | 0.336728 | 8_2:-72879833 | None:intergenic |
| ACTTTATTCCTCTTCTTTGA+TGG | 0.344473 | 8_2:+72878015 | Msa1267550:CDS |
| TTTACAGTCACCTTTCCATC+TGG | 0.368295 | 8_2:-72878268 | None:intergenic |
| TGGTTTCTTGGGCGACTGAT+TGG | 0.387076 | 8_2:-72879822 | None:intergenic |
| TATATTGGACCATACCGTTT+TGG | 0.393571 | 8_2:+72879864 | Msa1267550:CDS |
| TATTAGTCGACTGAATTTGT+TGG | 0.408347 | 8_2:-72879777 | None:intergenic |
| TAAAACTAGAATGTATATTC+TGG | 0.416222 | 8_2:+72879065 | Msa1267550:CDS |
| ATCCCTTCTTTGCTAGGGGC+TGG | 0.418097 | 8_2:-72878864 | None:intergenic |
| CTTCAATCCCTTCTTTGCTA+GGG | 0.422481 | 8_2:-72878869 | None:intergenic |
| AACATGTGGAGTTCTTTCTT+GGG | 0.423807 | 8_2:-72878236 | None:intergenic |
| CTTCCAGCCCCTAGCAAAGA+AGG | 0.423970 | 8_2:+72878861 | Msa1267550:CDS |
| CTCCCATGCATAGTTTGTAA+TGG | 0.426934 | 8_2:-72879204 | None:intergenic |
| TCTTGGGCGACTGATTGGTT+TGG | 0.430360 | 8_2:-72879817 | None:intergenic |
| CTATGCATGGGAGATTATCT+AGG | 0.431047 | 8_2:+72879214 | Msa1267550:CDS |
| AAAACGGTATGGTCCAATAT+AGG | 0.432686 | 8_2:-72879862 | None:intergenic |
| ACTTCAATCCCTTCTTTGCT+AGG | 0.433841 | 8_2:-72878870 | None:intergenic |
| AAGAGCGATGTTAAGAACTA+TGG | 0.459102 | 8_2:+72878406 | Msa1267550:CDS |
| CTTTATTCCTCTTCTTTGAT+GGG | 0.462737 | 8_2:+72878016 | Msa1267550:CDS |
| ATATATATTCTGGTCGTGAA+TGG | 0.483145 | 8_2:+72878904 | Msa1267550:CDS |
| ATGTATATTCTGGAGGATAC+AGG | 0.488201 | 8_2:+72879075 | Msa1267550:CDS |
| TCCTCAACTTGGAGTTGAAA+GGG | 0.488533 | 8_2:+72878072 | Msa1267550:CDS |
| TGGGCGACTGATTGGTTTGG+TGG | 0.491784 | 8_2:-72879814 | None:intergenic |
| CATAGAGGAAATTGTATGCA+TGG | 0.503571 | 8_2:-72877978 | None:intergenic |
| AGATTATCTAGGCCTTTATG+AGG | 0.503786 | 8_2:+72879225 | Msa1267550:CDS |
| AAACCATTACAAACTATGCA+TGG | 0.506884 | 8_2:+72879201 | Msa1267550:CDS |
| TTCAATCCCTTCTTTGCTAG+GGG | 0.508172 | 8_2:-72878868 | None:intergenic |
| TTACAGTCACCTTTCCATCT+GGG | 0.509432 | 8_2:-72878267 | None:intergenic |
| ATCATTACCATCTACCAAAA+CGG | 0.511373 | 8_2:-72879878 | None:intergenic |
| TCCTTGCCTTGGTCTGCACA+AGG | 0.515897 | 8_2:-72879730 | None:intergenic |
| CTCCTCAACTTGGAGTTGAA+AGG | 0.517571 | 8_2:+72878071 | Msa1267550:CDS |
| GGAGTAGTTTGAATTATGAA+AGG | 0.529192 | 8_2:-72878052 | None:intergenic |
| ATTCAAACTACTCCTCAACT+TGG | 0.533290 | 8_2:+72878061 | Msa1267550:CDS |
| TGTTGGTTGGCCAAGTCTGA+TGG | 0.537691 | 8_2:-72879760 | None:intergenic |
| TCCCTTTCAACTCCAAGTTG+AGG | 0.546205 | 8_2:-72878073 | None:intergenic |
| CGATGAACAACAAAGCAGCT+TGG | 0.554733 | 8_2:+72879918 | Msa1267550:CDS |
| TTCATGAGGTTGATTCATAG+AGG | 0.556140 | 8_2:-72877993 | None:intergenic |
| AAAATTCAAATAGAGGGAGG+TGG | 0.561158 | 8_2:+72878830 | Msa1267550:intron |
| ATAGAGGAAATTGTATGCAT+GGG | 0.562915 | 8_2:-72877977 | None:intergenic |
| ACTTGGAGTTGAAAGGGAAG+AGG | 0.563033 | 8_2:+72878078 | Msa1267550:CDS |
| AACCATTACAAACTATGCAT+GGG | 0.584630 | 8_2:+72879202 | Msa1267550:CDS |
| AGTCGACTGAATTTGTTGGT+TGG | 0.588883 | 8_2:-72879773 | None:intergenic |
| TACCATCTACCAAAACGGTA+TGG | 0.590397 | 8_2:-72879873 | None:intergenic |
| GGCTTGTGATCTATCGACAC+TGG | 0.594889 | 8_2:+72879699 | Msa1267550:CDS |
| GAAGAGGAATAAAGTTCATG+AGG | 0.601671 | 8_2:-72878007 | None:intergenic |
| ACTTTGTCCCATCAAAGAAG+AGG | 0.603667 | 8_2:-72878023 | None:intergenic |
| TTGGTAGATGGTAATGATGG+TGG | 0.608724 | 8_2:+72879883 | Msa1267550:CDS |
| AACTAGAATGTATATTCTGG+AGG | 0.612428 | 8_2:+72879068 | Msa1267550:CDS |
| TTCCAGCCCCTAGCAAAGAA+GGG | 0.619594 | 8_2:+72878862 | Msa1267550:CDS |
| GCAAAATTGCTAGAGAACAA+AGG | 0.622012 | 8_2:+72878128 | Msa1267550:CDS |
| ACCTTGTGCAGACCAAGGCA+AGG | 0.622413 | 8_2:+72879729 | Msa1267550:CDS |
| CTCTTACCTTGTGCAGACCA+AGG | 0.626902 | 8_2:+72879724 | Msa1267550:CDS |
| TGGTCGCATTGTCCTCCCAA+AGG | 0.635548 | 8_2:+72878426 | Msa1267550:CDS |
| ACGGTATGGTCCAATATAGG+TGG | 0.655667 | 8_2:-72879859 | None:intergenic |
| GTAGATGGTAATGATGGTGG+TGG | 0.655874 | 8_2:+72879886 | Msa1267550:CDS |
| AAGAAGCCCTCACCTTTGGG+AGG | 0.679981 | 8_2:-72878438 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTATAAATCATAACAA+CGG | - | chr8_2:72878550-72878569 | None:intergenic | 10.0% |
| !!! | TATTTTTATTTTTGTTCTTT+TGG | + | chr8_2:72878776-72878795 | Msa1267550:intron | 10.0% |
| !!! | TTTTTTATAAATCATAACAA+CGG | - | chr8_2:72878550-72878569 | None:intergenic | 10.0% |
| !!! | TATTTTTATTTTTGTTCTTT+TGG | + | chr8_2:72878776-72878795 | Msa1267550:intron | 10.0% |
| !!! | TTTTTATAAATCATAACAAC+GGG | - | chr8_2:72878549-72878568 | None:intergenic | 15.0% |
| !!! | TTTTTATAAATCATAACAAC+GGG | - | chr8_2:72878549-72878568 | None:intergenic | 15.0% |
| !!! | ATTTTCAAGGATATATATTC+TGG | + | chr8_2:72878894-72878913 | Msa1267550:CDS | 20.0% |
| !! | TAAAACTAGAATGTATATTC+TGG | + | chr8_2:72879065-72879084 | Msa1267550:CDS | 20.0% |
| !!! | TACAATCATTTTTTTCATCT+GGG | - | chr8_2:72879446-72879465 | None:intergenic | 20.0% |
| !!! | ATTTTCAAGGATATATATTC+TGG | + | chr8_2:72878894-72878913 | Msa1267550:CDS | 20.0% |
| !! | TAAAACTAGAATGTATATTC+TGG | + | chr8_2:72879065-72879084 | Msa1267550:CDS | 20.0% |
| !!! | TACAATCATTTTTTTCATCT+GGG | - | chr8_2:72879446-72879465 | None:intergenic | 20.0% |
| ! | AGAAAAAAATTGAAGCAAAG+AGG | + | chr8_2:72878104-72878123 | Msa1267550:CDS | 25.0% |
| !! | TGTGGTATTTATTACTCTTT+TGG | + | chr8_2:72878310-72878329 | Msa1267550:intron | 25.0% |
| !! | ATTTTCTCTCTTAATGTAAC+AGG | + | chr8_2:72879169-72879188 | Msa1267550:intron | 25.0% |
| !! | TTTTCTCTCTTAATGTAACA+GGG | + | chr8_2:72879170-72879189 | Msa1267550:intron | 25.0% |
| !!! | CTACAATCATTTTTTTCATC+TGG | - | chr8_2:72879447-72879466 | None:intergenic | 25.0% |
| !!! | TATTGTTTTACAACTCACAA+TGG | - | chr8_2:72879611-72879630 | None:intergenic | 25.0% |
| ! | AATTCAGTCGACTAATAATT+TGG | + | chr8_2:72879783-72879802 | Msa1267550:CDS | 25.0% |
| ! | AAACATCAAAAATATCGTCA+AGG | - | chr8_2:72879960-72879979 | None:intergenic | 25.0% |
| ! | AGAAAAAAATTGAAGCAAAG+AGG | + | chr8_2:72878104-72878123 | Msa1267550:CDS | 25.0% |
| !! | TGTGGTATTTATTACTCTTT+TGG | + | chr8_2:72878310-72878329 | Msa1267550:intron | 25.0% |
| !! | ATTTTCTCTCTTAATGTAAC+AGG | + | chr8_2:72879169-72879188 | Msa1267550:intron | 25.0% |
| !! | TTTTCTCTCTTAATGTAACA+GGG | + | chr8_2:72879170-72879189 | Msa1267550:intron | 25.0% |
| !!! | CTACAATCATTTTTTTCATC+TGG | - | chr8_2:72879447-72879466 | None:intergenic | 25.0% |
| !!! | TATTGTTTTACAACTCACAA+TGG | - | chr8_2:72879611-72879630 | None:intergenic | 25.0% |
| ! | AATTCAGTCGACTAATAATT+TGG | + | chr8_2:72879783-72879802 | Msa1267550:CDS | 25.0% |
| ! | AAACATCAAAAATATCGTCA+AGG | - | chr8_2:72879960-72879979 | None:intergenic | 25.0% |
| ACTTTATTCCTCTTCTTTGA+TGG | + | chr8_2:72878015-72878034 | Msa1267550:CDS | 30.0% | |
| CTTTATTCCTCTTCTTTGAT+GGG | + | chr8_2:72878016-72878035 | Msa1267550:CDS | 30.0% | |
| GGAGTAGTTTGAATTATGAA+AGG | - | chr8_2:72878055-72878074 | None:intergenic | 30.0% | |
| ACAAAGCTTGAAATCTTTCA+TGG | + | chr8_2:72878734-72878753 | Msa1267550:intron | 30.0% | |
| TTCTCCCAAAATTCAAATAG+AGG | + | chr8_2:72878823-72878842 | Msa1267550:intron | 30.0% | |
| TCTCCCAAAATTCAAATAGA+GGG | + | chr8_2:72878824-72878843 | Msa1267550:intron | 30.0% | |
| ATATATATTCTGGTCGTGAA+TGG | + | chr8_2:72878904-72878923 | Msa1267550:CDS | 30.0% | |
| AGTTTATACCCATTAGAGTT+TGG | - | chr8_2:72879017-72879036 | None:intergenic | 30.0% | |
| ! | AAACTCTAATGGGTATAAAC+TGG | + | chr8_2:72879016-72879035 | Msa1267550:intron | 30.0% |
| GTATAAACTGGAAATTCCAT+AGG | + | chr8_2:72879028-72879047 | Msa1267550:intron | 30.0% | |
| !! | TTCCATAGGTATTGGATTAA+TGG | + | chr8_2:72879042-72879061 | Msa1267550:intron | 30.0% |
| TACCATTAATCCAATACCTA+TGG | - | chr8_2:72879047-72879066 | None:intergenic | 30.0% | |
| AACTAGAATGTATATTCTGG+AGG | + | chr8_2:72879068-72879087 | Msa1267550:CDS | 30.0% | |
| AAATTAGCAACACTAAGAAG+TGG | - | chr8_2:72879108-72879127 | None:intergenic | 30.0% | |
| ! | TGTTTCAGTTCTCATGATTT+TGG | + | chr8_2:72879132-72879151 | Msa1267550:intron | 30.0% |
| ! | GTTTCAGTTCTCATGATTTT+GGG | + | chr8_2:72879133-72879152 | Msa1267550:intron | 30.0% |
| AAACCATTACAAACTATGCA+TGG | + | chr8_2:72879201-72879220 | Msa1267550:CDS | 30.0% | |
| AACCATTACAAACTATGCAT+GGG | + | chr8_2:72879202-72879221 | Msa1267550:CDS | 30.0% | |
| !!! | TTTTAAGTTCGTCCTCATAA+AGG | - | chr8_2:72879240-72879259 | None:intergenic | 30.0% |
| TGAGGACGAACTTAAAAATT+TGG | + | chr8_2:72879243-72879262 | Msa1267550:CDS | 30.0% | |
| ATAAGAGAAGTCTGTAAACA+TGG | - | chr8_2:72879508-72879527 | None:intergenic | 30.0% | |
| TATTAGTCGACTGAATTTGT+TGG | - | chr8_2:72879780-72879799 | None:intergenic | 30.0% | |
| !! | TGCAGTATTATTGGTTTCTT+GGG | - | chr8_2:72879836-72879855 | None:intergenic | 30.0% |
| !! | TTGCAGTATTATTGGTTTCT+TGG | - | chr8_2:72879837-72879856 | None:intergenic | 30.0% |
| ATCATTACCATCTACCAAAA+CGG | - | chr8_2:72879881-72879900 | None:intergenic | 30.0% | |
| ACTTTATTCCTCTTCTTTGA+TGG | + | chr8_2:72878015-72878034 | Msa1267550:CDS | 30.0% | |
| CTTTATTCCTCTTCTTTGAT+GGG | + | chr8_2:72878016-72878035 | Msa1267550:CDS | 30.0% | |
| GGAGTAGTTTGAATTATGAA+AGG | - | chr8_2:72878055-72878074 | None:intergenic | 30.0% | |
| ACAAAGCTTGAAATCTTTCA+TGG | + | chr8_2:72878734-72878753 | Msa1267550:intron | 30.0% | |
| TTCTCCCAAAATTCAAATAG+AGG | + | chr8_2:72878823-72878842 | Msa1267550:intron | 30.0% | |
| TCTCCCAAAATTCAAATAGA+GGG | + | chr8_2:72878824-72878843 | Msa1267550:intron | 30.0% | |
| ATATATATTCTGGTCGTGAA+TGG | + | chr8_2:72878904-72878923 | Msa1267550:CDS | 30.0% | |
| AGTTTATACCCATTAGAGTT+TGG | - | chr8_2:72879017-72879036 | None:intergenic | 30.0% | |
| ! | AAACTCTAATGGGTATAAAC+TGG | + | chr8_2:72879016-72879035 | Msa1267550:intron | 30.0% |
| GTATAAACTGGAAATTCCAT+AGG | + | chr8_2:72879028-72879047 | Msa1267550:intron | 30.0% | |
| !! | TTCCATAGGTATTGGATTAA+TGG | + | chr8_2:72879042-72879061 | Msa1267550:intron | 30.0% |
| TACCATTAATCCAATACCTA+TGG | - | chr8_2:72879047-72879066 | None:intergenic | 30.0% | |
| AACTAGAATGTATATTCTGG+AGG | + | chr8_2:72879068-72879087 | Msa1267550:CDS | 30.0% | |
| AAATTAGCAACACTAAGAAG+TGG | - | chr8_2:72879108-72879127 | None:intergenic | 30.0% | |
| ! | TGTTTCAGTTCTCATGATTT+TGG | + | chr8_2:72879132-72879151 | Msa1267550:intron | 30.0% |
| ! | GTTTCAGTTCTCATGATTTT+GGG | + | chr8_2:72879133-72879152 | Msa1267550:intron | 30.0% |
| AAACCATTACAAACTATGCA+TGG | + | chr8_2:72879201-72879220 | Msa1267550:CDS | 30.0% | |
| AACCATTACAAACTATGCAT+GGG | + | chr8_2:72879202-72879221 | Msa1267550:CDS | 30.0% | |
| !!! | TTTTAAGTTCGTCCTCATAA+AGG | - | chr8_2:72879240-72879259 | None:intergenic | 30.0% |
| TGAGGACGAACTTAAAAATT+TGG | + | chr8_2:72879243-72879262 | Msa1267550:CDS | 30.0% | |
| ATAAGAGAAGTCTGTAAACA+TGG | - | chr8_2:72879508-72879527 | None:intergenic | 30.0% | |
| TATTAGTCGACTGAATTTGT+TGG | - | chr8_2:72879780-72879799 | None:intergenic | 30.0% | |
| !! | TGCAGTATTATTGGTTTCTT+GGG | - | chr8_2:72879836-72879855 | None:intergenic | 30.0% |
| !! | TTGCAGTATTATTGGTTTCT+TGG | - | chr8_2:72879837-72879856 | None:intergenic | 30.0% |
| ATCATTACCATCTACCAAAA+CGG | - | chr8_2:72879881-72879900 | None:intergenic | 30.0% | |
| ! | TTCATGAGGTTGATTCATAG+AGG | - | chr8_2:72877996-72878015 | None:intergenic | 35.0% |
| GAAGAGGAATAAAGTTCATG+AGG | - | chr8_2:72878010-72878029 | None:intergenic | 35.0% | |
| ATTCAAACTACTCCTCAACT+TGG | + | chr8_2:72878061-72878080 | Msa1267550:CDS | 35.0% | |
| GCAAAATTGCTAGAGAACAA+AGG | + | chr8_2:72878128-72878147 | Msa1267550:CDS | 35.0% | |
| AACATGTGGAGTTCTTTCTT+GGG | - | chr8_2:72878239-72878258 | None:intergenic | 35.0% | |
| AAACATGTGGAGTTCTTTCT+TGG | - | chr8_2:72878240-72878259 | None:intergenic | 35.0% | |
| AAGAGCGATGTTAAGAACTA+TGG | + | chr8_2:72878406-72878425 | Msa1267550:CDS | 35.0% | |
| !! | TGTGTCACTGTATTTTCGAA+AGG | - | chr8_2:72878699-72878718 | None:intergenic | 35.0% |
| ! | CCTCCCTCTATTTGAATTTT+GGG | - | chr8_2:72878830-72878849 | None:intergenic | 35.0% |
| ! | ACCTCCCTCTATTTGAATTT+TGG | - | chr8_2:72878831-72878850 | None:intergenic | 35.0% |
| AAAATTCAAATAGAGGGAGG+TGG | + | chr8_2:72878830-72878849 | Msa1267550:intron | 35.0% | |
| !! | AGGGATTGAAGTCATTTTCA+AGG | + | chr8_2:72878881-72878900 | Msa1267550:CDS | 35.0% |
| TATACCCATTAGAGTTTGGA+AGG | - | chr8_2:72879013-72879032 | None:intergenic | 35.0% | |
| ACTGGAAATTCCATAGGTAT+TGG | + | chr8_2:72879034-72879053 | Msa1267550:intron | 35.0% | |
| ! | ATGTATATTCTGGAGGATAC+AGG | + | chr8_2:72879075-72879094 | Msa1267550:CDS | 35.0% |
| AGATTATCTAGGCCTTTATG+AGG | + | chr8_2:72879225-72879244 | Msa1267550:CDS | 35.0% | |
| GAAGTCTGTAAACATGGTAA+TGG | - | chr8_2:72879502-72879521 | None:intergenic | 35.0% | |
| AAAACGGTATGGTCCAATAT+AGG | - | chr8_2:72879865-72879884 | None:intergenic | 35.0% | |
| ! | TATATTGGACCATACCGTTT+TGG | + | chr8_2:72879864-72879883 | Msa1267550:CDS | 35.0% |
| !! | GTTTTGGTAGATGGTAATGA+TGG | + | chr8_2:72879880-72879899 | Msa1267550:CDS | 35.0% |
| ! | TTCATGAGGTTGATTCATAG+AGG | - | chr8_2:72877996-72878015 | None:intergenic | 35.0% |
| GAAGAGGAATAAAGTTCATG+AGG | - | chr8_2:72878010-72878029 | None:intergenic | 35.0% | |
| ATTCAAACTACTCCTCAACT+TGG | + | chr8_2:72878061-72878080 | Msa1267550:CDS | 35.0% | |
| GCAAAATTGCTAGAGAACAA+AGG | + | chr8_2:72878128-72878147 | Msa1267550:CDS | 35.0% | |
| AACATGTGGAGTTCTTTCTT+GGG | - | chr8_2:72878239-72878258 | None:intergenic | 35.0% | |
| AAACATGTGGAGTTCTTTCT+TGG | - | chr8_2:72878240-72878259 | None:intergenic | 35.0% | |
| AAGAGCGATGTTAAGAACTA+TGG | + | chr8_2:72878406-72878425 | Msa1267550:CDS | 35.0% | |
| !! | TGTGTCACTGTATTTTCGAA+AGG | - | chr8_2:72878699-72878718 | None:intergenic | 35.0% |
| ! | CCTCCCTCTATTTGAATTTT+GGG | - | chr8_2:72878830-72878849 | None:intergenic | 35.0% |
| ! | ACCTCCCTCTATTTGAATTT+TGG | - | chr8_2:72878831-72878850 | None:intergenic | 35.0% |
| AAAATTCAAATAGAGGGAGG+TGG | + | chr8_2:72878830-72878849 | Msa1267550:intron | 35.0% | |
| !! | AGGGATTGAAGTCATTTTCA+AGG | + | chr8_2:72878881-72878900 | Msa1267550:CDS | 35.0% |
| TATACCCATTAGAGTTTGGA+AGG | - | chr8_2:72879013-72879032 | None:intergenic | 35.0% | |
| ACTGGAAATTCCATAGGTAT+TGG | + | chr8_2:72879034-72879053 | Msa1267550:intron | 35.0% | |
| ! | ATGTATATTCTGGAGGATAC+AGG | + | chr8_2:72879075-72879094 | Msa1267550:CDS | 35.0% |
| AGATTATCTAGGCCTTTATG+AGG | + | chr8_2:72879225-72879244 | Msa1267550:CDS | 35.0% | |
| GAAGTCTGTAAACATGGTAA+TGG | - | chr8_2:72879502-72879521 | None:intergenic | 35.0% | |
| AAAACGGTATGGTCCAATAT+AGG | - | chr8_2:72879865-72879884 | None:intergenic | 35.0% | |
| ! | TATATTGGACCATACCGTTT+TGG | + | chr8_2:72879864-72879883 | Msa1267550:CDS | 35.0% |
| !! | GTTTTGGTAGATGGTAATGA+TGG | + | chr8_2:72879880-72879899 | Msa1267550:CDS | 35.0% |
| ACTTTGTCCCATCAAAGAAG+AGG | - | chr8_2:72878026-72878045 | None:intergenic | 40.0% | |
| TCCTCAACTTGGAGTTGAAA+GGG | + | chr8_2:72878072-72878091 | Msa1267550:CDS | 40.0% | |
| TCTGGGCTGTAAAAAACATG+TGG | - | chr8_2:72878253-72878272 | None:intergenic | 40.0% | |
| !!! | CATGTTTTTTACAGCCCAGA+TGG | + | chr8_2:72878253-72878272 | Msa1267550:CDS | 40.0% |
| ! | TTTTTACAGCCCAGATGGAA+AGG | + | chr8_2:72878258-72878277 | Msa1267550:CDS | 40.0% |
| TTACAGTCACCTTTCCATCT+GGG | - | chr8_2:72878270-72878289 | None:intergenic | 40.0% | |
| TTTACAGTCACCTTTCCATC+TGG | - | chr8_2:72878271-72878290 | None:intergenic | 40.0% | |
| CCCAAAATTCAAATAGAGGG+AGG | + | chr8_2:72878827-72878846 | Msa1267550:intron | 40.0% | |
| TTCAATCCCTTCTTTGCTAG+GGG | - | chr8_2:72878871-72878890 | None:intergenic | 40.0% | |
| CTTCAATCCCTTCTTTGCTA+GGG | - | chr8_2:72878872-72878891 | None:intergenic | 40.0% | |
| ACTTCAATCCCTTCTTTGCT+AGG | - | chr8_2:72878873-72878892 | None:intergenic | 40.0% | |
| ! | CTCCCATGCATAGTTTGTAA+TGG | - | chr8_2:72879207-72879226 | None:intergenic | 40.0% |
| CTATGCATGGGAGATTATCT+AGG | + | chr8_2:72879214-72879233 | Msa1267550:CDS | 40.0% | |
| GCAGTATGTGTGCACAAAAA+AGG | + | chr8_2:72879678-72879697 | Msa1267550:intron | 40.0% | |
| ! | ATGGTTCTTTTTCCTTGCCT+TGG | - | chr8_2:72879744-72879763 | None:intergenic | 40.0% |
| GGAAAAAGAACCATCAGACT+TGG | + | chr8_2:72879750-72879769 | Msa1267550:CDS | 40.0% | |
| !! | AGTCGACTGAATTTGTTGGT+TGG | - | chr8_2:72879776-72879795 | None:intergenic | 40.0% |
| AGGTGGCATTGCAGTATTAT+TGG | - | chr8_2:72879845-72879864 | None:intergenic | 40.0% | |
| TACTGCAATGCCACCTATAT+TGG | + | chr8_2:72879849-72879868 | Msa1267550:CDS | 40.0% | |
| TACCATCTACCAAAACGGTA+TGG | - | chr8_2:72879876-72879895 | None:intergenic | 40.0% | |
| ! | TTGGTAGATGGTAATGATGG+TGG | + | chr8_2:72879883-72879902 | Msa1267550:CDS | 40.0% |
| ACTTTGTCCCATCAAAGAAG+AGG | - | chr8_2:72878026-72878045 | None:intergenic | 40.0% | |
| TCCTCAACTTGGAGTTGAAA+GGG | + | chr8_2:72878072-72878091 | Msa1267550:CDS | 40.0% | |
| TCTGGGCTGTAAAAAACATG+TGG | - | chr8_2:72878253-72878272 | None:intergenic | 40.0% | |
| !!! | CATGTTTTTTACAGCCCAGA+TGG | + | chr8_2:72878253-72878272 | Msa1267550:CDS | 40.0% |
| ! | TTTTTACAGCCCAGATGGAA+AGG | + | chr8_2:72878258-72878277 | Msa1267550:CDS | 40.0% |
| TTACAGTCACCTTTCCATCT+GGG | - | chr8_2:72878270-72878289 | None:intergenic | 40.0% | |
| TTTACAGTCACCTTTCCATC+TGG | - | chr8_2:72878271-72878290 | None:intergenic | 40.0% | |
| CCCAAAATTCAAATAGAGGG+AGG | + | chr8_2:72878827-72878846 | Msa1267550:intron | 40.0% | |
| TTCAATCCCTTCTTTGCTAG+GGG | - | chr8_2:72878871-72878890 | None:intergenic | 40.0% | |
| CTTCAATCCCTTCTTTGCTA+GGG | - | chr8_2:72878872-72878891 | None:intergenic | 40.0% | |
| ACTTCAATCCCTTCTTTGCT+AGG | - | chr8_2:72878873-72878892 | None:intergenic | 40.0% | |
| ! | CTCCCATGCATAGTTTGTAA+TGG | - | chr8_2:72879207-72879226 | None:intergenic | 40.0% |
| CTATGCATGGGAGATTATCT+AGG | + | chr8_2:72879214-72879233 | Msa1267550:CDS | 40.0% | |
| GCAGTATGTGTGCACAAAAA+AGG | + | chr8_2:72879678-72879697 | Msa1267550:intron | 40.0% | |
| ! | ATGGTTCTTTTTCCTTGCCT+TGG | - | chr8_2:72879744-72879763 | None:intergenic | 40.0% |
| GGAAAAAGAACCATCAGACT+TGG | + | chr8_2:72879750-72879769 | Msa1267550:CDS | 40.0% | |
| !! | AGTCGACTGAATTTGTTGGT+TGG | - | chr8_2:72879776-72879795 | None:intergenic | 40.0% |
| AGGTGGCATTGCAGTATTAT+TGG | - | chr8_2:72879845-72879864 | None:intergenic | 40.0% | |
| TACTGCAATGCCACCTATAT+TGG | + | chr8_2:72879849-72879868 | Msa1267550:CDS | 40.0% | |
| TACCATCTACCAAAACGGTA+TGG | - | chr8_2:72879876-72879895 | None:intergenic | 40.0% | |
| ! | TTGGTAGATGGTAATGATGG+TGG | + | chr8_2:72879883-72879902 | Msa1267550:CDS | 40.0% |
| CTCCTCAACTTGGAGTTGAA+AGG | + | chr8_2:72878071-72878090 | Msa1267550:CDS | 45.0% | |
| TCCCTTTCAACTCCAAGTTG+AGG | - | chr8_2:72878076-72878095 | None:intergenic | 45.0% | |
| ACTTGGAGTTGAAAGGGAAG+AGG | + | chr8_2:72878078-72878097 | Msa1267550:CDS | 45.0% | |
| ATGAAGAAGCCCTCACCTTT+GGG | - | chr8_2:72878444-72878463 | None:intergenic | 45.0% | |
| GTGAGGGCTTCTTCATCAAA+GGG | + | chr8_2:72878448-72878467 | Msa1267550:intron | 45.0% | |
| TGTCGCCTTCCAAACTCTAA+TGG | + | chr8_2:72879005-72879024 | Msa1267550:intron | 45.0% | |
| GTCGCCTTCCAAACTCTAAT+GGG | + | chr8_2:72879006-72879025 | Msa1267550:intron | 45.0% | |
| CATGAACTCTTCTTTGTGCG+AGG | + | chr8_2:72879653-72879672 | Msa1267550:intron | 45.0% | |
| ACGGTATGGTCCAATATAGG+TGG | - | chr8_2:72879862-72879881 | None:intergenic | 45.0% | |
| !! | GACCATACCGTTTTGGTAGA+TGG | + | chr8_2:72879871-72879890 | Msa1267550:CDS | 45.0% |
| !! | GTAGATGGTAATGATGGTGG+TGG | + | chr8_2:72879886-72879905 | Msa1267550:CDS | 45.0% |
| CGATGAACAACAAAGCAGCT+TGG | + | chr8_2:72879918-72879937 | Msa1267550:CDS | 45.0% | |
| CTCCTCAACTTGGAGTTGAA+AGG | + | chr8_2:72878071-72878090 | Msa1267550:CDS | 45.0% | |
| TCCCTTTCAACTCCAAGTTG+AGG | - | chr8_2:72878076-72878095 | None:intergenic | 45.0% | |
| ACTTGGAGTTGAAAGGGAAG+AGG | + | chr8_2:72878078-72878097 | Msa1267550:CDS | 45.0% | |
| ATGAAGAAGCCCTCACCTTT+GGG | - | chr8_2:72878444-72878463 | None:intergenic | 45.0% | |
| GTGAGGGCTTCTTCATCAAA+GGG | + | chr8_2:72878448-72878467 | Msa1267550:intron | 45.0% | |
| TGTCGCCTTCCAAACTCTAA+TGG | + | chr8_2:72879005-72879024 | Msa1267550:intron | 45.0% | |
| GTCGCCTTCCAAACTCTAAT+GGG | + | chr8_2:72879006-72879025 | Msa1267550:intron | 45.0% | |
| CATGAACTCTTCTTTGTGCG+AGG | + | chr8_2:72879653-72879672 | Msa1267550:intron | 45.0% | |
| ACGGTATGGTCCAATATAGG+TGG | - | chr8_2:72879862-72879881 | None:intergenic | 45.0% | |
| !! | GACCATACCGTTTTGGTAGA+TGG | + | chr8_2:72879871-72879890 | Msa1267550:CDS | 45.0% |
| !! | GTAGATGGTAATGATGGTGG+TGG | + | chr8_2:72879886-72879905 | Msa1267550:CDS | 45.0% |
| CGATGAACAACAAAGCAGCT+TGG | + | chr8_2:72879918-72879937 | Msa1267550:CDS | 45.0% | |
| !! | TTTAATTAATTATATTTATG+TGG | + | chr8_2:72878292-72878311 | Msa1267550:intron | 5.0% |
| !!! | ATATTAATAACTTTTATAAA+AGG | - | chr8_2:72879281-72879300 | None:intergenic | 5.0% |
| !! | TTTAATTAATTATATTTATG+TGG | + | chr8_2:72878292-72878311 | Msa1267550:intron | 5.0% |
| !!! | ATATTAATAACTTTTATAAA+AGG | - | chr8_2:72879281-72879300 | None:intergenic | 5.0% |
| CATTGTCCTCCCAAAGGTGA+GGG | + | chr8_2:72878432-72878451 | Msa1267550:intron | 50.0% | |
| GATGAAGAAGCCCTCACCTT+TGG | - | chr8_2:72878445-72878464 | None:intergenic | 50.0% | |
| GGTGAGGGCTTCTTCATCAA+AGG | + | chr8_2:72878447-72878466 | Msa1267550:intron | 50.0% | |
| TTCCAGCCCCTAGCAAAGAA+GGG | + | chr8_2:72878862-72878881 | Msa1267550:CDS | 50.0% | |
| ! | TCTGGGAAGTGTGCATTGAC+TGG | - | chr8_2:72879429-72879448 | None:intergenic | 50.0% |
| GGCTTGTGATCTATCGACAC+TGG | + | chr8_2:72879699-72879718 | Msa1267550:CDS | 50.0% | |
| CTCTTACCTTGTGCAGACCA+AGG | + | chr8_2:72879724-72879743 | Msa1267550:CDS | 50.0% | |
| ! | TGTTGGTTGGCCAAGTCTGA+TGG | - | chr8_2:72879763-72879782 | None:intergenic | 50.0% |
| ! | TCTTGGGCGACTGATTGGTT+TGG | - | chr8_2:72879820-72879839 | None:intergenic | 50.0% |
| TGGTTTCTTGGGCGACTGAT+TGG | - | chr8_2:72879825-72879844 | None:intergenic | 50.0% | |
| CATTGTCCTCCCAAAGGTGA+GGG | + | chr8_2:72878432-72878451 | Msa1267550:intron | 50.0% | |
| GATGAAGAAGCCCTCACCTT+TGG | - | chr8_2:72878445-72878464 | None:intergenic | 50.0% | |
| GGTGAGGGCTTCTTCATCAA+AGG | + | chr8_2:72878447-72878466 | Msa1267550:intron | 50.0% | |
| TTCCAGCCCCTAGCAAAGAA+GGG | + | chr8_2:72878862-72878881 | Msa1267550:CDS | 50.0% | |
| ! | TCTGGGAAGTGTGCATTGAC+TGG | - | chr8_2:72879429-72879448 | None:intergenic | 50.0% |
| GGCTTGTGATCTATCGACAC+TGG | + | chr8_2:72879699-72879718 | Msa1267550:CDS | 50.0% | |
| CTCTTACCTTGTGCAGACCA+AGG | + | chr8_2:72879724-72879743 | Msa1267550:CDS | 50.0% | |
| ! | TGTTGGTTGGCCAAGTCTGA+TGG | - | chr8_2:72879763-72879782 | None:intergenic | 50.0% |
| ! | TCTTGGGCGACTGATTGGTT+TGG | - | chr8_2:72879820-72879839 | None:intergenic | 50.0% |
| TGGTTTCTTGGGCGACTGAT+TGG | - | chr8_2:72879825-72879844 | None:intergenic | 50.0% | |
| TGGTCGCATTGTCCTCCCAA+AGG | + | chr8_2:72878426-72878445 | Msa1267550:CDS | 55.0% | |
| GCATTGTCCTCCCAAAGGTG+AGG | + | chr8_2:72878431-72878450 | Msa1267550:intron | 55.0% | |
| AAGAAGCCCTCACCTTTGGG+AGG | - | chr8_2:72878441-72878460 | None:intergenic | 55.0% | |
| CTTCCAGCCCCTAGCAAAGA+AGG | + | chr8_2:72878861-72878880 | Msa1267550:CDS | 55.0% | |
| ATCCCTTCTTTGCTAGGGGC+TGG | - | chr8_2:72878867-72878886 | None:intergenic | 55.0% | |
| ACCTTGTGCAGACCAAGGCA+AGG | + | chr8_2:72879729-72879748 | Msa1267550:CDS | 55.0% | |
| TCCTTGCCTTGGTCTGCACA+AGG | - | chr8_2:72879733-72879752 | None:intergenic | 55.0% | |
| !! | TGGGCGACTGATTGGTTTGG+TGG | - | chr8_2:72879817-72879836 | None:intergenic | 55.0% |
| TGGTCGCATTGTCCTCCCAA+AGG | + | chr8_2:72878426-72878445 | Msa1267550:CDS | 55.0% | |
| GCATTGTCCTCCCAAAGGTG+AGG | + | chr8_2:72878431-72878450 | Msa1267550:intron | 55.0% | |
| AAGAAGCCCTCACCTTTGGG+AGG | - | chr8_2:72878441-72878460 | None:intergenic | 55.0% | |
| CTTCCAGCCCCTAGCAAAGA+AGG | + | chr8_2:72878861-72878880 | Msa1267550:CDS | 55.0% | |
| ATCCCTTCTTTGCTAGGGGC+TGG | - | chr8_2:72878867-72878886 | None:intergenic | 55.0% | |
| ACCTTGTGCAGACCAAGGCA+AGG | + | chr8_2:72879729-72879748 | Msa1267550:CDS | 55.0% | |
| TCCTTGCCTTGGTCTGCACA+AGG | - | chr8_2:72879733-72879752 | None:intergenic | 55.0% | |
| !! | TGGGCGACTGATTGGTTTGG+TGG | - | chr8_2:72879817-72879836 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 72877980 | 72879984 | 72877980 | ID=Msa1267550;Name=Msa1267550 |
| chr8_2 | mRNA | 72877980 | 72879984 | 72877980 | ID=Msa1267550-mRNA-1;Parent=Msa1267550;Name=Msa1267550-mRNA-1;_AED=0.08;_eAED=0.15;_QI=0|0|0|1|1|1|6|0|298 |
| chr8_2 | exon | 72877980 | 72878279 | 72877980 | ID=Msa1267550-mRNA-1:exon:24697;Parent=Msa1267550-mRNA-1 |
| chr8_2 | exon | 72878373 | 72878447 | 72878373 | ID=Msa1267550-mRNA-1:exon:24698;Parent=Msa1267550-mRNA-1 |
| chr8_2 | exon | 72878843 | 72878940 | 72878843 | ID=Msa1267550-mRNA-1:exon:24699;Parent=Msa1267550-mRNA-1 |
| chr8_2 | exon | 72879050 | 72879096 | 72879050 | ID=Msa1267550-mRNA-1:exon:24700;Parent=Msa1267550-mRNA-1 |
| chr8_2 | exon | 72879191 | 72879264 | 72879191 | ID=Msa1267550-mRNA-1:exon:24701;Parent=Msa1267550-mRNA-1 |
| chr8_2 | exon | 72879682 | 72879984 | 72879682 | ID=Msa1267550-mRNA-1:exon:24702;Parent=Msa1267550-mRNA-1 |
| chr8_2 | CDS | 72877980 | 72878279 | 72877980 | ID=Msa1267550-mRNA-1:cds;Parent=Msa1267550-mRNA-1 |
| chr8_2 | CDS | 72878373 | 72878447 | 72878373 | ID=Msa1267550-mRNA-1:cds;Parent=Msa1267550-mRNA-1 |
| chr8_2 | CDS | 72878843 | 72878940 | 72878843 | ID=Msa1267550-mRNA-1:cds;Parent=Msa1267550-mRNA-1 |
| chr8_2 | CDS | 72879050 | 72879096 | 72879050 | ID=Msa1267550-mRNA-1:cds;Parent=Msa1267550-mRNA-1 |
| chr8_2 | CDS | 72879191 | 72879264 | 72879191 | ID=Msa1267550-mRNA-1:cds;Parent=Msa1267550-mRNA-1 |
| chr8_2 | CDS | 72879682 | 72879984 | 72879682 | ID=Msa1267550-mRNA-1:cds;Parent=Msa1267550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
