Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1268990 | RHN50388.1 | 91.634 | 777 | 63 | 2 | 1 | 776 | 1 | 776 | 0.0 | 1469 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1268990 | sp|Q9C5X9|HAC1_ARATH | 45.797 | 797 | 351 | 14 | 51 | 773 | 896 | 1685 | 0.0 | 714 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1268990 | A0A396HCL0 | 91.634 | 777 | 63 | 2 | 1 | 776 | 1 | 776 | 0.0 | 1469 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1268990 | TR | TAZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1268990 | MtrunA17_Chr6g0456861 | 91.634 | 777 | 63 | 2 | 1 | 776 | 1 | 776 | 0.0 | 1469 |
| Msa1268990 | MtrunA17_Chr5g0438991 | 84.637 | 716 | 97 | 6 | 58 | 763 | 246 | 958 | 0.0 | 1242 |
| Msa1268990 | MtrunA17_Chr3g0138411 | 70.402 | 821 | 175 | 9 | 22 | 776 | 388 | 1206 | 0.0 | 1167 |
| Msa1268990 | MtrunA17_Chr3g0133461 | 66.589 | 856 | 197 | 12 | 2 | 776 | 496 | 1343 | 0.0 | 1118 |
| Msa1268990 | MtrunA17_Chr4g0000031 | 45.980 | 796 | 350 | 13 | 51 | 773 | 909 | 1697 | 0.0 | 704 |
| Msa1268990 | MtrunA17_Chr6g0456851 | 63.951 | 491 | 151 | 9 | 59 | 529 | 349 | 833 | 0.0 | 613 |
| Msa1268990 | MtrunA17_Chr6g0456851 | 68.254 | 63 | 20 | 0 | 575 | 637 | 811 | 873 | 1.10e-19 | 94.4 |
| Msa1268990 | MtrunA17_Chr6g0456931 | 71.901 | 242 | 60 | 2 | 251 | 484 | 1 | 242 | 1.38e-120 | 362 |
| Msa1268990 | MtrunA17_Chr5g0401991 | 78.166 | 229 | 40 | 2 | 472 | 698 | 1 | 221 | 3.09e-118 | 355 |
| Msa1268990 | MtrunA17_Chr5g0402001 | 85.149 | 101 | 14 | 1 | 322 | 421 | 1 | 101 | 2.05e-53 | 179 |
| Msa1268990 | MtrunA17_Chr5g0439001 | 80.851 | 94 | 18 | 0 | 423 | 516 | 1 | 94 | 1.88e-44 | 155 |
| Msa1268990 | MtrunA17_Chr6g0456921 | 44.221 | 199 | 39 | 7 | 322 | 519 | 1 | 128 | 3.86e-34 | 133 |
| Msa1268990 | MtrunA17_Chr1g0169961 | 71.084 | 83 | 23 | 1 | 58 | 140 | 87 | 168 | 2.94e-31 | 120 |
| Msa1268990 | MtrunA17_Chr6g0456911 | 90.909 | 55 | 5 | 0 | 583 | 637 | 6 | 60 | 5.57e-28 | 107 |
| Msa1268990 | MtrunA17_Chr0c02g0489811 | 89.474 | 57 | 6 | 0 | 581 | 637 | 5 | 61 | 1.59e-27 | 106 |
| Msa1268990 | MtrunA17_Chr7g0229221 | 85.965 | 57 | 8 | 0 | 581 | 637 | 5 | 61 | 2.88e-26 | 102 |
| Msa1268990 | MtrunA17_Chr0c02g0489731 | 80.702 | 57 | 11 | 0 | 581 | 637 | 5 | 61 | 5.10e-24 | 96.3 |
| Msa1268990 | MtrunA17_Chr0c02g0489721 | 87.234 | 47 | 6 | 0 | 511 | 557 | 1 | 47 | 8.22e-23 | 92.0 |
| Msa1268990 | MtrunA17_Chr7g0229231 | 87.234 | 47 | 6 | 0 | 511 | 557 | 1 | 47 | 8.22e-23 | 92.0 |
| Msa1268990 | MtrunA17_Chr0c02g0489821 | 88.889 | 45 | 5 | 0 | 513 | 557 | 1 | 45 | 6.95e-22 | 89.4 |
| Msa1268990 | MtrunA17_Chr6g0456781 | 63.492 | 63 | 20 | 1 | 112 | 174 | 25 | 84 | 3.88e-17 | 78.6 |
| Msa1268990 | MtrunA17_Chr5g0402011 | 96.774 | 31 | 1 | 0 | 177 | 207 | 21 | 51 | 6.01e-15 | 70.9 |
| Msa1268990 | MtrunA17_Chr5g0401281 | 38.889 | 72 | 43 | 1 | 692 | 762 | 279 | 350 | 9.37e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1268990 | AT1G79000.1 | 45.797 | 797 | 351 | 14 | 51 | 773 | 896 | 1685 | 0.0 | 714 |
| Msa1268990 | AT1G79000.3 | 45.797 | 797 | 351 | 14 | 51 | 773 | 872 | 1661 | 0.0 | 714 |
| Msa1268990 | AT1G79000.2 | 45.797 | 797 | 351 | 14 | 51 | 773 | 896 | 1685 | 0.0 | 713 |
| Msa1268990 | AT1G16710.3 | 45.671 | 797 | 352 | 14 | 51 | 773 | 879 | 1668 | 0.0 | 700 |
| Msa1268990 | AT1G16710.10 | 45.671 | 797 | 352 | 14 | 51 | 773 | 879 | 1668 | 0.0 | 700 |
| Msa1268990 | AT1G16710.8 | 45.671 | 797 | 352 | 14 | 51 | 773 | 879 | 1668 | 0.0 | 700 |
| Msa1268990 | AT1G16710.7 | 45.671 | 797 | 352 | 14 | 51 | 773 | 879 | 1668 | 0.0 | 700 |
| Msa1268990 | AT1G16710.2 | 45.671 | 797 | 352 | 14 | 51 | 773 | 876 | 1665 | 0.0 | 700 |
| Msa1268990 | AT1G16710.6 | 45.671 | 797 | 352 | 14 | 51 | 773 | 840 | 1629 | 0.0 | 700 |
| Msa1268990 | AT1G16710.4 | 45.671 | 797 | 352 | 14 | 51 | 773 | 840 | 1629 | 0.0 | 700 |
| Msa1268990 | AT1G16710.1 | 45.671 | 797 | 352 | 14 | 51 | 773 | 905 | 1694 | 0.0 | 700 |
| Msa1268990 | AT1G16710.5 | 45.671 | 797 | 352 | 14 | 51 | 773 | 840 | 1629 | 0.0 | 700 |
| Msa1268990 | AT3G12980.1 | 45.663 | 784 | 347 | 14 | 58 | 773 | 885 | 1657 | 0.0 | 689 |
| Msa1268990 | AT3G12980.2 | 45.663 | 784 | 347 | 14 | 58 | 773 | 804 | 1576 | 0.0 | 688 |
| Msa1268990 | AT1G67220.1 | 43.099 | 768 | 362 | 18 | 56 | 754 | 602 | 1363 | 0.0 | 599 |
| Msa1268990 | AT1G55970.1 | 41.296 | 787 | 381 | 12 | 60 | 773 | 681 | 1459 | 0.0 | 598 |
| Msa1268990 | AT1G55970.2 | 41.423 | 787 | 366 | 13 | 60 | 773 | 681 | 1445 | 0.0 | 594 |
| Msa1268990 | AT1G16710.9 | 50.276 | 543 | 243 | 10 | 51 | 568 | 879 | 1419 | 1.92e-174 | 540 |
| Msa1268990 | AT5G67480.1 | 39.080 | 87 | 51 | 2 | 690 | 775 | 271 | 356 | 3.67e-12 | 69.3 |
| Msa1268990 | AT5G67480.3 | 39.080 | 87 | 51 | 2 | 690 | 775 | 271 | 356 | 3.67e-12 | 69.3 |
| Msa1268990 | AT5G67480.2 | 39.080 | 87 | 51 | 2 | 690 | 775 | 282 | 367 | 4.06e-12 | 69.3 |
Find 118 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCGAGTCTTTGCAATTTC+TGG | 0.071145 | 8_3:-2170261 | None:intergenic |
| TACTAATATGTTCTTCTATT+TGG | 0.118199 | 8_3:-2167120 | None:intergenic |
| ACACTTGCAACCTATGTAAA+AGG | 0.199149 | 8_3:+2167429 | Msa1268990:CDS |
| GAAAGTGAATAAGCAGTTTC+TGG | 0.202627 | 8_3:+2168222 | Msa1268990:CDS |
| TAACGTTTGCGTACCATTTC+AGG | 0.204389 | 8_3:-2167028 | None:intergenic |
| AGAGTGGATTGTTTGAAAAT+AGG | 0.213298 | 8_3:+2169763 | Msa1268990:CDS |
| TTGATTCCGTCAAGTATTTC+AGG | 0.217147 | 8_3:+2168494 | Msa1268990:CDS |
| CACTGAATGCAAGAAATTTC+AGG | 0.225944 | 8_3:+2169445 | Msa1268990:CDS |
| TGCCATGAAGTGATAGTTTC+TGG | 0.254466 | 8_3:+2169407 | Msa1268990:CDS |
| ATCAAGGAAACGGCAACTTT+TGG | 0.256208 | 8_3:-2167079 | None:intergenic |
| GAGTGGATTGTTTGAAAATA+GGG | 0.257007 | 8_3:+2169764 | Msa1268990:CDS |
| GCACCAAAGTTAGCAGCTTT+TGG | 0.260444 | 8_3:-2167913 | None:intergenic |
| AGCTCGAATTTCACACTTAC+TGG | 0.290061 | 8_3:-2170186 | None:intergenic |
| CTACAACAAGAAAGCAGATT+TGG | 0.308511 | 8_3:+2167825 | Msa1268990:CDS |
| TTGCATCACCAGTATGTCTT+TGG | 0.314513 | 8_3:-2169224 | None:intergenic |
| GGAATGTATGTCCAGGAGTT+TGG | 0.324631 | 8_3:+2168424 | Msa1268990:CDS |
| CTTCGTTTACCATGAGATAT+TGG | 0.325834 | 8_3:+2168555 | Msa1268990:CDS |
| GTTTCTCAACTTGCTACATA+TGG | 0.342725 | 8_3:+2168716 | Msa1268990:CDS |
| TTGCCGGAGAGCTGAAGTTT+TGG | 0.350228 | 8_3:+2170517 | Msa1268990:CDS |
| AAGTGTGTTCTTCAGAACTA+TGG | 0.361251 | 8_3:-2169570 | None:intergenic |
| CTTCTGTTTCAGAAAATTGA+AGG | 0.379117 | 8_3:+2168382 | Msa1268990:CDS |
| TCACAGCAGGATTGTGTAGA+TGG | 0.382870 | 8_3:-2169872 | None:intergenic |
| TCTCGTTTGCCATACTTTGA+TGG | 0.385478 | 8_3:+2169073 | Msa1268990:CDS |
| CCTCTTTGCAAGATTTCTCT+TGG | 0.395307 | 8_3:-2167624 | None:intergenic |
| AGTATGTCAATCTGAAAATC+AGG | 0.400507 | 8_3:+2169938 | Msa1268990:CDS |
| CACCAGTCTCCATCAAAGTA+TGG | 0.407484 | 8_3:-2169082 | None:intergenic |
| CAGCATTACTTGCGCGGCGG+CGG | 0.411023 | 8_3:-2170112 | None:intergenic |
| TCCCAGAAACTATCACTTCA+TGG | 0.413448 | 8_3:-2169409 | None:intergenic |
| TGATGAAGTAATTGAAGAAC+CGG | 0.418960 | 8_3:+2167652 | Msa1268990:CDS |
| TCAGTAGGGTAATTCTCCTC+TGG | 0.420217 | 8_3:-2168253 | None:intergenic |
| TCAGGAGTTAAATGAGGAAA+TGG | 0.421433 | 8_3:+2169956 | Msa1268990:CDS |
| GGTGAAAATGTCAAAATCAA+TGG | 0.423219 | 8_3:+2167590 | Msa1268990:CDS |
| CAAAGCAATCTGAATCTTGC+CGG | 0.429471 | 8_3:+2170501 | Msa1268990:CDS |
| CTGAATTCTCTTATAGATCA+AGG | 0.429818 | 8_3:+2168272 | Msa1268990:CDS |
| TGGCGTAGCTTATGATTCTT+CGG | 0.436945 | 8_3:-2168802 | None:intergenic |
| ATGTATACACATCGCTGATT+CGG | 0.437115 | 8_3:-2168463 | None:intergenic |
| GATATCATTACGTTTCGTTT+CGG | 0.446327 | 8_3:-2169733 | None:intergenic |
| ATATATTCACAAAGAATCAT+TGG | 0.447202 | 8_3:-2170553 | None:intergenic |
| GTTCCAAAAGCTGCTAACTT+TGG | 0.449417 | 8_3:+2167910 | Msa1268990:CDS |
| CAAACTGAAACTGAGACTTC+TGG | 0.452077 | 8_3:-2169806 | None:intergenic |
| GTGAAAATGTCAAAATCAAT+GGG | 0.456076 | 8_3:+2167591 | Msa1268990:CDS |
| TTCTTGATTTGAGAACAGTT+TGG | 0.456469 | 8_3:-2170149 | None:intergenic |
| CAAGCCTTCCAAAGACATAC+TGG | 0.466131 | 8_3:+2169216 | Msa1268990:CDS |
| CGAGGTGCATACACTTTGTC+AGG | 0.471850 | 8_3:+2169603 | Msa1268990:CDS |
| AACGAAGAAAATATTGTCGT+TGG | 0.471978 | 8_3:+2168986 | Msa1268990:CDS |
| CTGGAGGTATCATCCTGAAA+TGG | 0.473823 | 8_3:+2167015 | Msa1268990:CDS |
| CAGTATGTCTTTGGAAGGCT+TGG | 0.474548 | 8_3:-2169215 | None:intergenic |
| TATATAGAGTGCACAATGAA+TGG | 0.474840 | 8_3:+2170571 | Msa1268990:three_prime_UTR |
| TTTAGGCCTGAAATACTTGA+CGG | 0.475542 | 8_3:-2168500 | None:intergenic |
| AGCTGCTAACTTTGGTGCTA+AGG | 0.483464 | 8_3:+2167918 | Msa1268990:CDS |
| GCCATGAAGTGATAGTTTCT+GGG | 0.487252 | 8_3:+2169408 | Msa1268990:CDS |
| TTTCTCAACTTGCTACATAT+GGG | 0.487718 | 8_3:+2168717 | Msa1268990:CDS |
| TCTGAGAAAGGAATCTGATC+AGG | 0.494346 | 8_3:+2167144 | Msa1268990:CDS |
| GATCTATAAGAGAATTCAGT+AGG | 0.499651 | 8_3:-2168268 | None:intergenic |
| TGCCATACTTTGATGGAGAC+TGG | 0.505154 | 8_3:+2169080 | Msa1268990:CDS |
| CACTTGCAACCTATGTAAAA+GGG | 0.507975 | 8_3:+2167430 | Msa1268990:CDS |
| CAGTAGGGTAATTCTCCTCT+GGG | 0.517758 | 8_3:-2168252 | None:intergenic |
| CACATTCCGAGCCAAACTCC+TGG | 0.518027 | 8_3:-2168435 | None:intergenic |
| CTCCAGAAATTGCAAAGACT+CGG | 0.519317 | 8_3:+2170259 | Msa1268990:CDS |
| CTTCCAAAACTTCAGCTCTC+CGG | 0.520379 | 8_3:-2170520 | None:intergenic |
| TTTAACACAGATTACTTCTG+AGG | 0.520413 | 8_3:+2167385 | Msa1268990:intron |
| ACATATTAGTAGTCTGAGAA+AGG | 0.521580 | 8_3:+2167132 | Msa1268990:CDS |
| ATCATTACGTTTCGTTTCGG+AGG | 0.526784 | 8_3:-2169730 | None:intergenic |
| TGATGAAGTATTCCCACCCT+TGG | 0.527385 | 8_3:-2166924 | None:intergenic |
| AGAAATTTCAGGAGTGTGAA+AGG | 0.528641 | 8_3:+2169456 | Msa1268990:CDS |
| GAACGAATCAATCAAGGAAA+CGG | 0.531194 | 8_3:-2167089 | None:intergenic |
| AGTATTTCAGGCCTAAAAGA+AGG | 0.532937 | 8_3:+2168506 | Msa1268990:CDS |
| CAGGAGTTTGGCTCGGAATG+TGG | 0.533156 | 8_3:+2168436 | Msa1268990:CDS |
| AGTGTCAAATAGAACAGTAA+AGG | 0.538963 | 8_3:+2169180 | Msa1268990:CDS |
| AATGTAGAATACCACGCTGC+AGG | 0.540083 | 8_3:+2170282 | Msa1268990:CDS |
| ATCACCAGTATGTCTTTGGA+AGG | 0.545017 | 8_3:-2169220 | None:intergenic |
| AATGCAATAAATGCAAAAGA+TGG | 0.545817 | 8_3:+2167782 | Msa1268990:CDS |
| CCAAGAGAAATCTTGCAAAG+AGG | 0.547222 | 8_3:+2167624 | Msa1268990:CDS |
| AAGTAGGATTCTCCACTGAC+TGG | 0.548342 | 8_3:+2166996 | Msa1268990:CDS |
| TGATAGTTTCTGGGAAGCGT+TGG | 0.550391 | 8_3:+2169417 | Msa1268990:CDS |
| GATCATCATAGACGAATACT+TGG | 0.551306 | 8_3:-2169844 | None:intergenic |
| CAGGATTGTGTAGATGGTAG+AGG | 0.552589 | 8_3:-2169866 | None:intergenic |
| GATGAATTCAGCAATCAAGT+AGG | 0.553814 | 8_3:+2166980 | Msa1268990:CDS |
| ACGTCTGAACGAATCAATCA+AGG | 0.557899 | 8_3:-2167095 | None:intergenic |
| ATTACTTCTGAGGATCAAGC+TGG | 0.564270 | 8_3:+2167395 | Msa1268990:CDS |
| GAAGAAGAATTTGTTGCACA+AGG | 0.565082 | 8_3:+2167533 | Msa1268990:CDS |
| TTTCAAACAATCCACTCTCA+AGG | 0.566291 | 8_3:-2169758 | None:intergenic |
| TGAAAATCAGGAGTTAAATG+AGG | 0.573360 | 8_3:+2169950 | Msa1268990:CDS |
| TGAATTCTCTTATAGATCAA+GGG | 0.573900 | 8_3:+2168273 | Msa1268990:CDS |
| CCTAAAAGAAGGACAAAGAG+TGG | 0.582381 | 8_3:+2168517 | Msa1268990:CDS |
| GAAGAACACACTTTAATGAA+CGG | 0.587580 | 8_3:+2169580 | Msa1268990:CDS |
| GAGAAGATGCTTGCCAAGGG+TGG | 0.589615 | 8_3:+2166911 | None:intergenic |
| TCATTACGTTTCGTTTCGGA+GGG | 0.591001 | 8_3:-2169729 | None:intergenic |
| GAACAGTTTGGATGAGAGCA+AGG | 0.592315 | 8_3:-2170137 | None:intergenic |
| AATGATATCGTCCTTGAGAG+TGG | 0.592327 | 8_3:+2169747 | Msa1268990:CDS |
| AGAAGATGCTTGCCAAGGGT+GGG | 0.592844 | 8_3:+2166912 | None:intergenic |
| CTGGTGGTGCGGTAATGCTA+TGG | 0.593172 | 8_3:+2169099 | Msa1268990:CDS |
| CAAACGAGAAACTGTCACCT+TGG | 0.598098 | 8_3:-2169059 | None:intergenic |
| AACGAGAAGATGCTTGCCAA+GGG | 0.603906 | 8_3:+2166908 | None:intergenic |
| GAACGAGAAGATGCTTGCCA+AGG | 0.606707 | 8_3:+2166907 | None:intergenic |
| GTATGTCCAGGAGTTTGGCT+CGG | 0.620509 | 8_3:+2168429 | Msa1268990:CDS |
| AGAATCATAAGCTACGCCAC+TGG | 0.623293 | 8_3:+2168806 | Msa1268990:CDS |
| CATGGTAAACGAAGGTACGA+AGG | 0.628852 | 8_3:-2168546 | None:intergenic |
| ATCTATAAGAGAATTCAGTA+GGG | 0.634140 | 8_3:-2168267 | None:intergenic |
| ATGGTAAACGAAGGTACGAA+GGG | 0.635264 | 8_3:-2168545 | None:intergenic |
| TAGGATTCTCCACTGACTGG+AGG | 0.639402 | 8_3:+2166999 | Msa1268990:CDS |
| AGGATGATACCTCCAGTCAG+TGG | 0.640148 | 8_3:-2167008 | None:intergenic |
| AAATAGAACAGTAAAGGACA+TGG | 0.650828 | 8_3:+2169186 | Msa1268990:CDS |
| AATAGAACAGTAAAGGACAT+GGG | 0.660656 | 8_3:+2169187 | Msa1268990:CDS |
| CATTACGTTTCGTTTCGGAG+GGG | 0.663900 | 8_3:-2169728 | None:intergenic |
| AAGGCTCAGCATTACTTGCG+CGG | 0.665538 | 8_3:-2170118 | None:intergenic |
| CAATATCTCATGGTAAACGA+AGG | 0.666016 | 8_3:-2168554 | None:intergenic |
| TCATAGACGAATACTTGGCA+CGG | 0.674822 | 8_3:-2169839 | None:intergenic |
| TGTGAAATTCGAGCTAATCG+AGG | 0.677098 | 8_3:+2170194 | Msa1268990:CDS |
| AAAGAAATGATCATACACGT+TGG | 0.679280 | 8_3:-2169014 | None:intergenic |
| CATACTTTGATGGAGACTGG+TGG | 0.703400 | 8_3:+2169083 | Msa1268990:CDS |
| TTTGATGGAGACTGGTGGTG+CGG | 0.706712 | 8_3:+2169088 | Msa1268990:CDS |
| GCTCAGCATTACTTGCGCGG+CGG | 0.715329 | 8_3:-2170115 | None:intergenic |
| ATTGTAACACACCTGCAGCG+TGG | 0.738381 | 8_3:-2170293 | None:intergenic |
| ACACACTTTAATGAACGGCG+AGG | 0.748870 | 8_3:+2169585 | Msa1268990:CDS |
| TAGACGAATACTTGGCACGG+CGG | 0.750894 | 8_3:-2169836 | None:intergenic |
| GTTTCTGGACATCATCCCAG+AGG | 0.751856 | 8_3:+2168237 | Msa1268990:CDS |
| AATATCGCAAGTGAGCTACG+AGG | 0.789451 | 8_3:-2169373 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTGATATTAAAAATTAC+CGG | - | chr8_3:2167674-2167693 | None:intergenic | 10.0% |
| !!! | TATTTTCAATTTCTTTTAAA+CGG | - | chr8_3:2167882-2167901 | None:intergenic | 10.0% |
| !!! | TTTAATTTTCTTGATTTATA+TGG | + | chr8_3:2169985-2170004 | Msa1268990:intron | 10.0% |
| !!! | TTTTTTTTTGAAGAAACAAT+TGG | - | chr8_3:2168318-2168337 | None:intergenic | 15.0% |
| !! | TTCAAAAAAAAATATATCTC+AGG | + | chr8_3:2168326-2168345 | Msa1268990:intron | 15.0% |
| !!! | ATATAATTATCACCTTTTTT+TGG | - | chr8_3:2168751-2168770 | None:intergenic | 15.0% |
| !! | TTTATATTATTTATTTGTGC+AGG | + | chr8_3:2168939-2168958 | Msa1268990:intron | 15.0% |
| !!! | TTATTTTCGTAATTTTGATT+AGG | + | chr8_3:2169316-2169335 | Msa1268990:intron | 15.0% |
| !! | AAAATTATATGAAAAACTTC+AGG | - | chr8_3:2169641-2169660 | None:intergenic | 15.0% |
| !! | TACTAATATGTTCTTCTATT+TGG | - | chr8_3:2167123-2167142 | None:intergenic | 20.0% |
| !! | GTTAATATCTAAACAAATCA+AGG | - | chr8_3:2167201-2167220 | None:intergenic | 20.0% |
| !!! | AGTCAATAATTTTAATAGCA+TGG | - | chr8_3:2168094-2168113 | None:intergenic | 20.0% |
| !!! | TGCTATTAAAATTATTGACT+TGG | + | chr8_3:2168094-2168113 | Msa1268990:intron | 20.0% |
| !!! | ATTCATTTTGTTAGTTCTAT+TGG | - | chr8_3:2168609-2168628 | None:intergenic | 20.0% |
| !! | TAAACAAAGATGATAAAAGA+AGG | - | chr8_3:2168923-2168942 | None:intergenic | 20.0% |
| !! | ATAGAATATCCAAATTCTTT+AGG | - | chr8_3:2170335-2170354 | None:intergenic | 20.0% |
| !! | ATATATTCACAAAGAATCAT+TGG | - | chr8_3:2170556-2170575 | None:intergenic | 20.0% |
| ! | TAATTGAAATTACTAGAAGG+TGG | - | chr8_3:2167178-2167197 | None:intergenic | 25.0% |
| ! | AGGTAATTGAAATTACTAGA+AGG | - | chr8_3:2167181-2167200 | None:intergenic | 25.0% |
| ! | TTTGTTTAGATATTAACCCT+TGG | + | chr8_3:2167204-2167223 | Msa1268990:intron | 25.0% |
| ! | GTTTCATATATAACATCCAA+GGG | - | chr8_3:2167223-2167242 | None:intergenic | 25.0% |
| ! | AGTTTCATATATAACATCCA+AGG | - | chr8_3:2167224-2167243 | None:intergenic | 25.0% |
| ! | CACAACATAAACAAAAAAGT+GGG | - | chr8_3:2167478-2167497 | None:intergenic | 25.0% |
| !! | GAGTGTTATAAGACTTTTAA+AGG | + | chr8_3:2167569-2167588 | Msa1268990:CDS | 25.0% |
| ! | GTGAAAATGTCAAAATCAAT+GGG | + | chr8_3:2167591-2167610 | Msa1268990:CDS | 25.0% |
| ! | AATGCAATAAATGCAAAAGA+TGG | + | chr8_3:2167782-2167801 | Msa1268990:CDS | 25.0% |
| !! | ATTTCTTTTAAACGGCATAA+AGG | - | chr8_3:2167874-2167893 | None:intergenic | 25.0% |
| ! | AAAAAACTTGGAAAAAGATG+AGG | + | chr8_3:2168008-2168027 | Msa1268990:CDS | 25.0% |
| ! | ATCTATAAGAGAATTCAGTA+GGG | - | chr8_3:2168270-2168289 | None:intergenic | 25.0% |
| ! | TGAATTCTCTTATAGATCAA+GGG | + | chr8_3:2168273-2168292 | Msa1268990:CDS | 25.0% |
| ! | AGAAAAATACCAATATCTCA+TGG | - | chr8_3:2168567-2168586 | None:intergenic | 25.0% |
| !! | TAGTTCTATTGGCATAAAAA+TGG | - | chr8_3:2168598-2168617 | None:intergenic | 25.0% |
| !!! | TTTTTTCCTTATCATCAGAT+TGG | + | chr8_3:2168667-2168686 | Msa1268990:intron | 25.0% |
| ! | GTATCTTTCAATGCTAAAAA+AGG | + | chr8_3:2168961-2168980 | Msa1268990:CDS | 25.0% |
| !!! | TTTCGTAATTTTGATTAGGT+TGG | + | chr8_3:2169320-2169339 | Msa1268990:intron | 25.0% |
| !! | CTTTTGTAGGCAATATATTT+TGG | - | chr8_3:2169346-2169365 | None:intergenic | 25.0% |
| !! | ATATGAAAAACTTCAGGTTT+AGG | - | chr8_3:2169635-2169654 | None:intergenic | 25.0% |
| ! | AAAAATTACTCTGTTGTGAA+AGG | - | chr8_3:2170403-2170422 | None:intergenic | 25.0% |
| !!! | TTCACAACAGAGTAATTTTT+TGG | + | chr8_3:2170403-2170422 | Msa1268990:intron | 25.0% |
| ACATATTAGTAGTCTGAGAA+AGG | + | chr8_3:2167132-2167151 | Msa1268990:CDS | 30.0% | |
| TTTAACACAGATTACTTCTG+AGG | + | chr8_3:2167385-2167404 | Msa1268990:intron | 30.0% | |
| ! | AAAGTCTTTCCCTTTTACAT+AGG | - | chr8_3:2167442-2167461 | None:intergenic | 30.0% |
| CCACAACATAAACAAAAAAG+TGG | - | chr8_3:2167479-2167498 | None:intergenic | 30.0% | |
| !!! | CCACTTTTTTGTTTATGTTG+TGG | + | chr8_3:2167476-2167495 | Msa1268990:CDS | 30.0% |
| GGTGAAAATGTCAAAATCAA+TGG | + | chr8_3:2167590-2167609 | Msa1268990:CDS | 30.0% | |
| TGATGAAGTAATTGAAGAAC+CGG | + | chr8_3:2167652-2167671 | Msa1268990:CDS | 30.0% | |
| ! | TGAAAAGTCTTTTCTCTAAG+TGG | - | chr8_3:2167969-2167988 | None:intergenic | 30.0% |
| CATGCAAGAAAGAAAAAACT+TGG | + | chr8_3:2167996-2168015 | Msa1268990:CDS | 30.0% | |
| GATCTATAAGAGAATTCAGT+AGG | - | chr8_3:2168271-2168290 | None:intergenic | 30.0% | |
| CTGAATTCTCTTATAGATCA+AGG | + | chr8_3:2168272-2168291 | Msa1268990:CDS | 30.0% | |
| CTTCTGTTTCAGAAAATTGA+AGG | + | chr8_3:2168382-2168401 | Msa1268990:CDS | 30.0% | |
| ! | AAAAGCATAAGCAGAAAGAA+TGG | - | chr8_3:2168643-2168662 | None:intergenic | 30.0% |
| AGATAACCAATCTGATGATA+AGG | - | chr8_3:2168676-2168695 | None:intergenic | 30.0% | |
| ! | TGGTTATCTTGACTTTTGTA+AGG | + | chr8_3:2168687-2168706 | Msa1268990:CDS | 30.0% |
| ! | ATCTTGACTTTTGTAAGGAA+AGG | + | chr8_3:2168692-2168711 | Msa1268990:CDS | 30.0% |
| ! | TCTTGACTTTTGTAAGGAAA+GGG | + | chr8_3:2168693-2168712 | Msa1268990:CDS | 30.0% |
| !! | TTTCTCAACTTGCTACATAT+GGG | + | chr8_3:2168717-2168736 | Msa1268990:CDS | 30.0% |
| CTCAATGTATTGTACACATA+AGG | - | chr8_3:2168847-2168866 | None:intergenic | 30.0% | |
| AACGAAGAAAATATTGTCGT+TGG | + | chr8_3:2168986-2169005 | Msa1268990:CDS | 30.0% | |
| AAAGAAATGATCATACACGT+TGG | - | chr8_3:2169017-2169036 | None:intergenic | 30.0% | |
| TCTTTGTTCCTACTGAAAAA+AGG | + | chr8_3:2169032-2169051 | Msa1268990:CDS | 30.0% | |
| !!! | TTGGATTTCCTTTTTTCAGT+AGG | - | chr8_3:2169043-2169062 | None:intergenic | 30.0% |
| TACTGAAAAAAGGAAATCCA+AGG | + | chr8_3:2169042-2169061 | Msa1268990:CDS | 30.0% | |
| AGTGTCAAATAGAACAGTAA+AGG | + | chr8_3:2169180-2169199 | Msa1268990:CDS | 30.0% | |
| AAATAGAACAGTAAAGGACA+TGG | + | chr8_3:2169186-2169205 | Msa1268990:CDS | 30.0% | |
| AATAGAACAGTAAAGGACAT+GGG | + | chr8_3:2169187-2169206 | Msa1268990:CDS | 30.0% | |
| CATTTACTCGTGCATAAAAA+AGG | - | chr8_3:2169262-2169281 | None:intergenic | 30.0% | |
| !! | GAATGCATCTTTGAAATGTT+TGG | + | chr8_3:2169490-2169509 | Msa1268990:intron | 30.0% |
| ! | TGGCATTGAATGAAATAACA+AGG | + | chr8_3:2169510-2169529 | Msa1268990:intron | 30.0% |
| ! | GGCATTGAATGAAATAACAA+GGG | + | chr8_3:2169511-2169530 | Msa1268990:intron | 30.0% |
| GAAGAACACACTTTAATGAA+CGG | + | chr8_3:2169580-2169599 | Msa1268990:CDS | 30.0% | |
| !!! | TTGAATTATGTGCCATTTTC+AGG | + | chr8_3:2169689-2169708 | Msa1268990:intron | 30.0% |
| GATATCATTACGTTTCGTTT+CGG | - | chr8_3:2169736-2169755 | None:intergenic | 30.0% | |
| !! | AGAGTGGATTGTTTGAAAAT+AGG | + | chr8_3:2169763-2169782 | Msa1268990:CDS | 30.0% |
| !! | GAGTGGATTGTTTGAAAATA+GGG | + | chr8_3:2169764-2169783 | Msa1268990:CDS | 30.0% |
| ! | TGATTTTCAGATTGACATAC+TGG | - | chr8_3:2169939-2169958 | None:intergenic | 30.0% |
| AGTATGTCAATCTGAAAATC+AGG | + | chr8_3:2169938-2169957 | Msa1268990:CDS | 30.0% | |
| TGAAAATCAGGAGTTAAATG+AGG | + | chr8_3:2169950-2169969 | Msa1268990:CDS | 30.0% | |
| ! | TTCTTGATTTGAGAACAGTT+TGG | - | chr8_3:2170152-2170171 | None:intergenic | 30.0% |
| ! | ACCATATCTTTTTACAATGC+TGG | - | chr8_3:2170223-2170242 | None:intergenic | 30.0% |
| GAATATCCAAATTCTTTAGG+TGG | - | chr8_3:2170332-2170351 | None:intergenic | 30.0% | |
| TATATAGAGTGCACAATGAA+TGG | + | chr8_3:2170571-2170590 | Msa1268990:three_prime_UTR | 30.0% | |
| ! | GAAAATTTTGCAAGTGATTG+CGG | - | chr8_3:2170615-2170634 | None:intergenic | 30.0% |
| GATGAATTCAGCAATCAAGT+AGG | + | chr8_3:2166980-2166999 | Msa1268990:CDS | 35.0% | |
| GAACGAATCAATCAAGGAAA+CGG | - | chr8_3:2167092-2167111 | None:intergenic | 35.0% | |
| ACACTTGCAACCTATGTAAA+AGG | + | chr8_3:2167429-2167448 | Msa1268990:CDS | 35.0% | |
| CACTTGCAACCTATGTAAAA+GGG | + | chr8_3:2167430-2167449 | Msa1268990:CDS | 35.0% | |
| !! | GAAGAAGAATTTGTTGCACA+AGG | + | chr8_3:2167533-2167552 | Msa1268990:CDS | 35.0% |
| CTACAACAAGAAAGCAGATT+TGG | + | chr8_3:2167825-2167844 | Msa1268990:CDS | 35.0% | |
| GAAGTTTATGTGCATACATG+CGG | - | chr8_3:2168048-2168067 | None:intergenic | 35.0% | |
| ! | TGCAATTTTGCAGTGATTCA+AGG | - | chr8_3:2168145-2168164 | None:intergenic | 35.0% |
| TTGAATCACTGCAAAATTGC+AGG | + | chr8_3:2168144-2168163 | Msa1268990:intron | 35.0% | |
| GAAAGTGAATAAGCAGTTTC+TGG | + | chr8_3:2168222-2168241 | Msa1268990:CDS | 35.0% | |
| GAAGTATAACCTGAAACCAA+GGG | - | chr8_3:2168366-2168385 | None:intergenic | 35.0% | |
| ! | AGAAGTATAACCTGAAACCA+AGG | - | chr8_3:2168367-2168386 | None:intergenic | 35.0% |
| ! | GGAGTAGATGTATGCATTTT+TGG | + | chr8_3:2168403-2168422 | Msa1268990:CDS | 35.0% |
| !!! | CATTTTTGGAATGTATGTCC+AGG | + | chr8_3:2168417-2168436 | Msa1268990:CDS | 35.0% |
| ! | ATGTATACACATCGCTGATT+CGG | - | chr8_3:2168466-2168485 | None:intergenic | 35.0% |
| TTGATTCCGTCAAGTATTTC+AGG | + | chr8_3:2168494-2168513 | Msa1268990:CDS | 35.0% | |
| TTTAGGCCTGAAATACTTGA+CGG | - | chr8_3:2168503-2168522 | None:intergenic | 35.0% | |
| AGTATTTCAGGCCTAAAAGA+AGG | + | chr8_3:2168506-2168525 | Msa1268990:CDS | 35.0% | |
| CAATATCTCATGGTAAACGA+AGG | - | chr8_3:2168557-2168576 | None:intergenic | 35.0% | |
| CTTCGTTTACCATGAGATAT+TGG | + | chr8_3:2168555-2168574 | Msa1268990:CDS | 35.0% | |
| ! | CTTGACTTTTGTAAGGAAAG+GGG | + | chr8_3:2168694-2168713 | Msa1268990:CDS | 35.0% |
| !! | GTTTCTCAACTTGCTACATA+TGG | + | chr8_3:2168716-2168735 | Msa1268990:CDS | 35.0% |
| TACTCGTGCATAAAAAAGGA+TGG | - | chr8_3:2169258-2169277 | None:intergenic | 35.0% | |
| ! | ACGAGGAAGTTTTCTTTTGT+AGG | - | chr8_3:2169359-2169378 | None:intergenic | 35.0% |
| CACTGAATGCAAGAAATTTC+AGG | + | chr8_3:2169445-2169464 | Msa1268990:CDS | 35.0% | |
| ! | AGAAATTTCAGGAGTGTGAA+AGG | + | chr8_3:2169456-2169475 | Msa1268990:CDS | 35.0% |
| AAGTGTGTTCTTCAGAACTA+TGG | - | chr8_3:2169573-2169592 | None:intergenic | 35.0% | |
| TTTCAAACAATCCACTCTCA+AGG | - | chr8_3:2169761-2169780 | None:intergenic | 35.0% | |
| GATCATCATAGACGAATACT+TGG | - | chr8_3:2169847-2169866 | None:intergenic | 35.0% | |
| !!! | TTGAGCACTTTTGAGTTAAC+TGG | - | chr8_3:2169914-2169933 | None:intergenic | 35.0% |
| TCAGGAGTTAAATGAGGAAA+TGG | + | chr8_3:2169956-2169975 | Msa1268990:CDS | 35.0% | |
| GCCAGCATTGTAAAAAGATA+TGG | + | chr8_3:2170219-2170238 | Msa1268990:CDS | 35.0% | |
| TATCCAAATTCTTTAGGTGG+TGG | - | chr8_3:2170329-2170348 | None:intergenic | 35.0% | |
| TAACGTTTGCGTACCATTTC+AGG | - | chr8_3:2167031-2167050 | None:intergenic | 40.0% | |
| ! | TCAAGGAAACGGCAACTTTT+GGG | - | chr8_3:2167081-2167100 | None:intergenic | 40.0% |
| ! | ATCAAGGAAACGGCAACTTT+TGG | - | chr8_3:2167082-2167101 | None:intergenic | 40.0% |
| ACGTCTGAACGAATCAATCA+AGG | - | chr8_3:2167098-2167117 | None:intergenic | 40.0% | |
| TCTGAGAAAGGAATCTGATC+AGG | + | chr8_3:2167144-2167163 | Msa1268990:CDS | 40.0% | |
| ! | ATTACTTCTGAGGATCAAGC+TGG | + | chr8_3:2167395-2167414 | Msa1268990:CDS | 40.0% |
| CCTCTTTGCAAGATTTCTCT+TGG | - | chr8_3:2167627-2167646 | None:intergenic | 40.0% | |
| CCAAGAGAAATCTTGCAAAG+AGG | + | chr8_3:2167624-2167643 | Msa1268990:CDS | 40.0% | |
| !! | ATGACTGTTGTTTCGTCTAG+TGG | + | chr8_3:2167755-2167774 | Msa1268990:intron | 40.0% |
| !! | TGACTGTTGTTTCGTCTAGT+GGG | + | chr8_3:2167756-2167775 | Msa1268990:intron | 40.0% |
| GTTCCAAAAGCTGCTAACTT+TGG | + | chr8_3:2167910-2167929 | Msa1268990:CDS | 40.0% | |
| TAGATCAAGGGTAAGTTCAG+TGG | + | chr8_3:2168285-2168304 | Msa1268990:intron | 40.0% | |
| GGATTTAATAGAAGCTCCCT+TGG | + | chr8_3:2168347-2168366 | Msa1268990:intron | 40.0% | |
| ! | CCACTCTTTGTCCTTCTTTT+AGG | - | chr8_3:2168520-2168539 | None:intergenic | 40.0% |
| CCTAAAAGAAGGACAAAGAG+TGG | + | chr8_3:2168517-2168536 | Msa1268990:CDS | 40.0% | |
| ! | ATGGTAAACGAAGGTACGAA+GGG | - | chr8_3:2168548-2168567 | None:intergenic | 40.0% |
| GCATAAGCAGAAAGAATGGA+AGG | - | chr8_3:2168639-2168658 | None:intergenic | 40.0% | |
| !!! | ATCACCTTTTTTTGGAGCAC+AGG | - | chr8_3:2168743-2168762 | None:intergenic | 40.0% |
| ! | TTCGGAGTCTTTTGCTCTTT+CGG | - | chr8_3:2168787-2168806 | None:intergenic | 40.0% |
| TGGCGTAGCTTATGATTCTT+CGG | - | chr8_3:2168805-2168824 | None:intergenic | 40.0% | |
| TCTCGTTTGCCATACTTTGA+TGG | + | chr8_3:2169073-2169092 | Msa1268990:CDS | 40.0% | |
| !!! | TGCTCTACTCTCTTTTTCGA+GGG | - | chr8_3:2169137-2169156 | None:intergenic | 40.0% |
| ATCACCAGTATGTCTTTGGA+AGG | - | chr8_3:2169223-2169242 | None:intergenic | 40.0% | |
| TTGCATCACCAGTATGTCTT+TGG | - | chr8_3:2169227-2169246 | None:intergenic | 40.0% | |
| TGCCATGAAGTGATAGTTTC+TGG | + | chr8_3:2169407-2169426 | Msa1268990:CDS | 40.0% | |
| GCCATGAAGTGATAGTTTCT+GGG | + | chr8_3:2169408-2169427 | Msa1268990:CDS | 40.0% | |
| TCCCAGAAACTATCACTTCA+TGG | - | chr8_3:2169412-2169431 | None:intergenic | 40.0% | |
| TCATTACGTTTCGTTTCGGA+GGG | - | chr8_3:2169732-2169751 | None:intergenic | 40.0% | |
| ATCATTACGTTTCGTTTCGG+AGG | - | chr8_3:2169733-2169752 | None:intergenic | 40.0% | |
| AATGATATCGTCCTTGAGAG+TGG | + | chr8_3:2169747-2169766 | Msa1268990:CDS | 40.0% | |
| CAAACTGAAACTGAGACTTC+TGG | - | chr8_3:2169809-2169828 | None:intergenic | 40.0% | |
| TCATAGACGAATACTTGGCA+CGG | - | chr8_3:2169842-2169861 | None:intergenic | 40.0% | |
| !!! | TCATTTTGACTCATCACAGC+AGG | - | chr8_3:2169888-2169907 | None:intergenic | 40.0% |
| !! | CTTACTGACTTACACACAGA+TGG | + | chr8_3:2170052-2170071 | Msa1268990:intron | 40.0% |
| AGCTCGAATTTCACACTTAC+TGG | - | chr8_3:2170189-2170208 | None:intergenic | 40.0% | |
| TGTGAAATTCGAGCTAATCG+AGG | + | chr8_3:2170194-2170213 | Msa1268990:CDS | 40.0% | |
| CTCCAGAAATTGCAAAGACT+CGG | + | chr8_3:2170259-2170278 | Msa1268990:CDS | 40.0% | |
| TTCCGAGTCTTTGCAATTTC+TGG | - | chr8_3:2170264-2170283 | None:intergenic | 40.0% | |
| CTACCACCACCTAAAGAATT+TGG | + | chr8_3:2170323-2170342 | Msa1268990:intron | 40.0% | |
| CAAAGCAATCTGAATCTTGC+CGG | + | chr8_3:2170501-2170520 | Msa1268990:CDS | 40.0% | |
| !!! | GAAGTTTTGGAAGCAGTCAT+TGG | + | chr8_3:2170530-2170549 | Msa1268990:CDS | 40.0% |
| ! | TGATGAAGTATTCCCACCCT+TGG | - | chr8_3:2166927-2166946 | None:intergenic | 45.0% |
| AAGTAGGATTCTCCACTGAC+TGG | + | chr8_3:2166996-2167015 | Msa1268990:CDS | 45.0% | |
| !! | CTGGAGGTATCATCCTGAAA+TGG | + | chr8_3:2167015-2167034 | Msa1268990:CDS | 45.0% |
| ! | GCACCAAAGTTAGCAGCTTT+TGG | - | chr8_3:2167916-2167935 | None:intergenic | 45.0% |
| !! | AGCTGCTAACTTTGGTGCTA+AGG | + | chr8_3:2167918-2167937 | Msa1268990:CDS | 45.0% |
| CAGTAGGGTAATTCTCCTCT+GGG | - | chr8_3:2168255-2168274 | None:intergenic | 45.0% | |
| TCAGTAGGGTAATTCTCCTC+TGG | - | chr8_3:2168256-2168275 | None:intergenic | 45.0% | |
| ATAGAAGCTCCCTTGGTTTC+AGG | + | chr8_3:2168354-2168373 | Msa1268990:intron | 45.0% | |
| GGAATGTATGTCCAGGAGTT+TGG | + | chr8_3:2168424-2168443 | Msa1268990:CDS | 45.0% | |
| ! | CATGGTAAACGAAGGTACGA+AGG | - | chr8_3:2168549-2168568 | None:intergenic | 45.0% |
| ! | GAGTCTTTTGCTCTTTCGGA+TGG | - | chr8_3:2168783-2168802 | None:intergenic | 45.0% |
| AGAATCATAAGCTACGCCAC+TGG | + | chr8_3:2168806-2168825 | Msa1268990:CDS | 45.0% | |
| GAGAAAGTAAGACTGACCAG+TGG | - | chr8_3:2168825-2168844 | None:intergenic | 45.0% | |
| CAAACGAGAAACTGTCACCT+TGG | - | chr8_3:2169062-2169081 | None:intergenic | 45.0% | |
| TGCCATACTTTGATGGAGAC+TGG | + | chr8_3:2169080-2169099 | Msa1268990:CDS | 45.0% | |
| CACCAGTCTCCATCAAAGTA+TGG | - | chr8_3:2169085-2169104 | None:intergenic | 45.0% | |
| CATACTTTGATGGAGACTGG+TGG | + | chr8_3:2169083-2169102 | Msa1268990:CDS | 45.0% | |
| !! | CTGCTCTACTCTCTTTTTCG+AGG | - | chr8_3:2169138-2169157 | None:intergenic | 45.0% |
| ! | CAGTATGTCTTTGGAAGGCT+TGG | - | chr8_3:2169218-2169237 | None:intergenic | 45.0% |
| CAAGCCTTCCAAAGACATAC+TGG | + | chr8_3:2169216-2169235 | Msa1268990:CDS | 45.0% | |
| AATATCGCAAGTGAGCTACG+AGG | - | chr8_3:2169376-2169395 | None:intergenic | 45.0% | |
| ! | TGATAGTTTCTGGGAAGCGT+TGG | + | chr8_3:2169417-2169436 | Msa1268990:CDS | 45.0% |
| ACACACTTTAATGAACGGCG+AGG | + | chr8_3:2169585-2169604 | Msa1268990:CDS | 45.0% | |
| CATCAACAGCAGCCTGAAAA+TGG | - | chr8_3:2169704-2169723 | None:intergenic | 45.0% | |
| CATTACGTTTCGTTTCGGAG+GGG | - | chr8_3:2169731-2169750 | None:intergenic | 45.0% | |
| CAGGATTGTGTAGATGGTAG+AGG | - | chr8_3:2169869-2169888 | None:intergenic | 45.0% | |
| TCACAGCAGGATTGTGTAGA+TGG | - | chr8_3:2169875-2169894 | None:intergenic | 45.0% | |
| GAACAGTTTGGATGAGAGCA+AGG | - | chr8_3:2170140-2170159 | None:intergenic | 45.0% | |
| AATGTAGAATACCACGCTGC+AGG | + | chr8_3:2170282-2170301 | Msa1268990:CDS | 45.0% | |
| CTTCCAAAACTTCAGCTCTC+CGG | - | chr8_3:2170523-2170542 | None:intergenic | 45.0% | |
| ! | TAGGATTCTCCACTGACTGG+AGG | + | chr8_3:2166999-2167018 | Msa1268990:CDS | 50.0% |
| AGGATGATACCTCCAGTCAG+TGG | - | chr8_3:2167011-2167030 | None:intergenic | 50.0% | |
| GTGCATACATGCGGAGTTCT+CGG | - | chr8_3:2168039-2168058 | None:intergenic | 50.0% | |
| ! | GTTTCTGGACATCATCCCAG+AGG | + | chr8_3:2168237-2168256 | Msa1268990:CDS | 50.0% |
| GTATGTCCAGGAGTTTGGCT+CGG | + | chr8_3:2168429-2168448 | Msa1268990:CDS | 50.0% | |
| TGGGCCTGTGCTCCAAAAAA+AGG | + | chr8_3:2168736-2168755 | Msa1268990:CDS | 50.0% | |
| ! | TTTGATGGAGACTGGTGGTG+CGG | + | chr8_3:2169088-2169107 | Msa1268990:CDS | 50.0% |
| CGAGGTGCATACACTTTGTC+AGG | + | chr8_3:2169603-2169622 | Msa1268990:CDS | 50.0% | |
| TAGACGAATACTTGGCACGG+CGG | - | chr8_3:2169839-2169858 | None:intergenic | 50.0% | |
| AAGGCTCAGCATTACTTGCG+CGG | - | chr8_3:2170121-2170140 | None:intergenic | 50.0% | |
| ATTGTAACACACCTGCAGCG+TGG | - | chr8_3:2170296-2170315 | None:intergenic | 50.0% | |
| ! | TTGCCGGAGAGCTGAAGTTT+TGG | + | chr8_3:2170517-2170536 | Msa1268990:CDS | 50.0% |
| CACATTCCGAGCCAAACTCC+TGG | - | chr8_3:2168438-2168457 | None:intergenic | 55.0% | |
| !! | CAGGAGTTTGGCTCGGAATG+TGG | + | chr8_3:2168436-2168455 | Msa1268990:CDS | 55.0% |
| ! | CTGGTGGTGCGGTAATGCTA+TGG | + | chr8_3:2169099-2169118 | Msa1268990:CDS | 55.0% |
| GCTCAGCATTACTTGCGCGG+CGG | - | chr8_3:2170118-2170137 | None:intergenic | 60.0% | |
| CAGCATTACTTGCGCGGCGG+CGG | - | chr8_3:2170115-2170134 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 2166917 | 2170669 | 2166917 | ID=Msa1268990;Name=Msa1268990 |
| chr8_3 | mRNA | 2166917 | 2170669 | 2166917 | ID=Msa1268990-mRNA-1;Parent=Msa1268990;Name=Msa1268990-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.5|0.46|1|0.91|0.84|13|86|776 |
| chr8_3 | exon | 2166917 | 2167165 | 2166917 | ID=Msa1268990-mRNA-1:exon:640;Parent=Msa1268990-mRNA-1 |
| chr8_3 | exon | 2167395 | 2167673 | 2167395 | ID=Msa1268990-mRNA-1:exon:641;Parent=Msa1268990-mRNA-1 |
| chr8_3 | exon | 2167775 | 2168029 | 2167775 | ID=Msa1268990-mRNA-1:exon:642;Parent=Msa1268990-mRNA-1 |
| chr8_3 | exon | 2168166 | 2168294 | 2168166 | ID=Msa1268990-mRNA-1:exon:643;Parent=Msa1268990-mRNA-1 |
| chr8_3 | exon | 2168376 | 2168576 | 2168376 | ID=Msa1268990-mRNA-1:exon:644;Parent=Msa1268990-mRNA-1 |
| chr8_3 | exon | 2168685 | 2168827 | 2168685 | ID=Msa1268990-mRNA-1:exon:645;Parent=Msa1268990-mRNA-1 |
| chr8_3 | exon | 2168961 | 2169249 | 2168961 | ID=Msa1268990-mRNA-1:exon:646;Parent=Msa1268990-mRNA-1 |
| chr8_3 | exon | 2169338 | 2169477 | 2169338 | ID=Msa1268990-mRNA-1:exon:647;Parent=Msa1268990-mRNA-1 |
| chr8_3 | exon | 2169567 | 2169624 | 2169567 | ID=Msa1268990-mRNA-1:exon:648;Parent=Msa1268990-mRNA-1 |
| chr8_3 | exon | 2169711 | 2169977 | 2169711 | ID=Msa1268990-mRNA-1:exon:649;Parent=Msa1268990-mRNA-1 |
| chr8_3 | exon | 2170071 | 2170303 | 2170071 | ID=Msa1268990-mRNA-1:exon:650;Parent=Msa1268990-mRNA-1 |
| chr8_3 | exon | 2170472 | 2170592 | 2170472 | ID=Msa1268990-mRNA-1:exon:651;Parent=Msa1268990-mRNA-1 |
| chr8_3 | exon | 2170617 | 2170669 | 2170617 | ID=Msa1268990-mRNA-1:exon:652;Parent=Msa1268990-mRNA-1 |
| chr8_3 | CDS | 2166917 | 2167165 | 2166917 | ID=Msa1268990-mRNA-1:cds;Parent=Msa1268990-mRNA-1 |
| chr8_3 | CDS | 2167395 | 2167673 | 2167395 | ID=Msa1268990-mRNA-1:cds;Parent=Msa1268990-mRNA-1 |
| chr8_3 | CDS | 2167775 | 2168029 | 2167775 | ID=Msa1268990-mRNA-1:cds;Parent=Msa1268990-mRNA-1 |
| chr8_3 | CDS | 2168166 | 2168294 | 2168166 | ID=Msa1268990-mRNA-1:cds;Parent=Msa1268990-mRNA-1 |
| chr8_3 | CDS | 2168376 | 2168576 | 2168376 | ID=Msa1268990-mRNA-1:cds;Parent=Msa1268990-mRNA-1 |
| chr8_3 | CDS | 2168685 | 2168827 | 2168685 | ID=Msa1268990-mRNA-1:cds;Parent=Msa1268990-mRNA-1 |
| chr8_3 | CDS | 2168961 | 2169249 | 2168961 | ID=Msa1268990-mRNA-1:cds;Parent=Msa1268990-mRNA-1 |
| chr8_3 | CDS | 2169338 | 2169477 | 2169338 | ID=Msa1268990-mRNA-1:cds;Parent=Msa1268990-mRNA-1 |
| chr8_3 | CDS | 2169567 | 2169624 | 2169567 | ID=Msa1268990-mRNA-1:cds;Parent=Msa1268990-mRNA-1 |
| chr8_3 | CDS | 2169711 | 2169977 | 2169711 | ID=Msa1268990-mRNA-1:cds;Parent=Msa1268990-mRNA-1 |
| chr8_3 | CDS | 2170071 | 2170303 | 2170071 | ID=Msa1268990-mRNA-1:cds;Parent=Msa1268990-mRNA-1 |
| chr8_3 | CDS | 2170472 | 2170559 | 2170472 | ID=Msa1268990-mRNA-1:cds;Parent=Msa1268990-mRNA-1 |
| chr8_3 | three_prime_UTR | 2170560 | 2170592 | 2170560 | ID=Msa1268990-mRNA-1:three_prime_utr;Parent=Msa1268990-mRNA-1 |
| chr8_3 | three_prime_UTR | 2170617 | 2170669 | 2170617 | ID=Msa1268990-mRNA-1:three_prime_utr;Parent=Msa1268990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
