AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1270080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1270080 MtrunA17_Chr8g0355091 92.827 237 17 0 1 237 1 237 1.31e-164 454
Msa1270080 MtrunA17_Chr1g0206701 91.111 225 20 0 1 225 1 225 1.03e-152 424
Msa1270080 MtrunA17_Chr1g0206721 89.912 228 23 0 1 228 1 228 1.12e-145 406
Msa1270080 MtrunA17_Chr1g0149391 89.030 237 26 0 1 237 1 237 3.11e-144 402
Msa1270080 MtrunA17_Chr2g0292791 87.342 237 30 0 1 237 1 237 8.08e-144 401
Msa1270080 MtrunA17_Chr3g0099421 84.932 219 33 0 1 219 26 244 3.19e-139 390
Msa1270080 MtrunA17_Chr1g0206691 83.182 220 37 0 18 237 1 220 3.53e-135 379
Msa1270080 MtrunA17_Chr3g0099411 78.995 219 27 1 1 219 1 200 7.53e-122 345
Msa1270080 MtrunA17_Chr2g0300441 70.886 237 68 1 1 237 1 236 1.75e-118 337
Msa1270080 MtrunA17_Chr3g0089141 72.340 235 47 3 1 225 1 227 4.81e-117 333
Msa1270080 MtrunA17_Chr5g0422941 66.667 237 79 0 1 237 1 237 5.17e-117 333
Msa1270080 MtrunA17_Chr1g0208561 72.340 235 47 3 1 225 1 227 2.20e-116 332
Msa1270080 MtrunA17_Chr1g0206991 85.714 182 26 0 1 182 1 182 3.61e-115 327
Msa1270080 MtrunA17_Chr2g0317451 66.102 236 80 0 1 236 1 236 4.92e-115 328
Msa1270080 MtrunA17_Chr2g0317481 66.102 236 80 0 1 236 1 236 1.12e-114 327
Msa1270080 MtrunA17_Chr1g0188671 68.889 225 70 0 1 225 39 263 4.65e-113 325
Msa1270080 MtrunA17_Chr2g0325971 71.064 235 50 3 1 225 1 227 1.99e-112 322
Msa1270080 MtrunA17_Chr1g0187361 68.889 225 70 0 1 225 1 225 2.66e-112 322
Msa1270080 MtrunA17_Chr5g0419601 69.198 237 73 0 1 237 1 237 4.36e-112 321
Msa1270080 MtrunA17_Chr1g0208581 70.213 235 52 3 1 225 1 227 6.29e-112 320
Msa1270080 MtrunA17_Chr5g0422421 66.667 225 75 0 1 225 1 225 3.18e-107 308
Msa1270080 MtrunA17_Chr7g0238991 65.471 223 75 2 16 237 27 248 1.51e-99 290
Msa1270080 MtrunA17_Chr2g0300421 63.804 163 58 1 1 162 1 163 4.52e-65 199
Msa1270080 MtrunA17_Chr3g0085241 50.794 189 83 1 3 191 35 213 1.72e-63 198
Msa1270080 MtrunA17_Chr3g0119901 50.811 185 81 1 7 191 7 181 2.89e-61 191
Msa1270080 MtrunA17_Chr3g0089151 71.212 132 38 0 1 132 1 132 4.23e-61 188
Msa1270080 MtrunA17_Chr3g0111931 66.667 102 34 0 21 122 2 103 7.44e-44 143
Msa1270080 MtrunA17_Chr2g0333981 39.766 171 93 2 5 172 8 171 2.87e-39 134
Msa1270080 MtrunA17_Chr8g0379021 40.964 166 88 2 5 167 8 166 3.67e-39 133
Msa1270080 MtrunA17_Chr4g0018951 43.871 155 75 3 5 159 8 150 1.24e-32 116
Msa1270080 MtrunA17_Chr4g0071601 38.122 181 92 4 5 172 8 181 5.47e-30 110
Msa1270080 MtrunA17_Chr1g0187351 83.607 61 10 0 18 78 1 61 7.75e-30 106
Msa1270080 MtrunA17_Chr3g0111841 84.746 59 9 0 15 73 2 60 1.96e-29 105
Msa1270080 MtrunA17_Chr3g0111831 70.492 61 18 0 16 76 11 71 1.49e-23 90.5
Msa1270080 MtrunA17_Chr1g0175601 45.045 111 58 2 9 118 2 110 7.55e-23 91.7
Msa1270080 MtrunA17_Chr1g0169761 59.420 69 28 0 9 77 2 70 3.85e-22 89.7
Msa1270080 MtrunA17_Chr8g0376821 59.420 69 28 0 9 77 2 70 8.09e-22 89.0
Msa1270080 MtrunA17_Chr4g0074101 38.793 116 56 2 9 109 2 117 1.19e-21 89.0
Msa1270080 MtrunA17_Chr8g0357771 44.554 101 54 1 9 109 2 100 2.74e-21 87.4
Msa1270080 MtrunA17_Chr1g0175611 44.554 101 54 1 9 109 2 100 3.60e-21 87.0
Msa1270080 MtrunA17_Chr1g0180591 42.342 111 61 2 9 118 2 110 9.59e-21 85.9
Msa1270080 MtrunA17_Chr8g0356071 33.125 160 99 2 9 165 2 156 1.09e-19 82.8
Msa1270080 MtrunA17_Chr4g0052061 40.566 106 61 1 9 114 2 105 7.06e-19 80.5
Msa1270080 MtrunA17_Chr4g0052081 41.509 106 61 1 9 113 2 107 1.02e-17 77.8
Msa1270080 MtrunA17_Chr4g0049901 57.576 66 28 0 10 75 29 94 1.21e-17 79.0
Msa1270080 MtrunA17_Chr3g0097101 42.453 106 51 1 3 108 11 106 1.85e-17 78.6
Msa1270080 MtrunA17_Chr4g0057151 50.685 73 36 0 10 82 3 75 3.16e-17 77.4
Msa1270080 MtrunA17_Chr3g0077501 50.000 68 34 0 9 76 2 69 6.13e-17 77.0
Msa1270080 MtrunA17_Chr6g0474371 49.275 69 34 1 9 76 2 70 1.46e-16 75.1
Msa1270080 MtrunA17_Chr8g0351051 51.471 68 33 0 9 76 2 69 2.00e-16 75.9
Msa1270080 MtrunA17_Chr3g0134451 32.530 166 98 5 9 162 2 165 2.79e-16 76.6
Msa1270080 MtrunA17_Chr5g0412271 29.384 211 130 6 9 201 2 211 3.40e-16 75.1
Msa1270080 MtrunA17_Chr5g0412461 28.169 213 129 6 9 201 2 210 3.75e-16 74.7
Msa1270080 MtrunA17_Chr8g0380021 51.471 68 33 0 9 76 18 85 4.22e-16 75.1
Msa1270080 MtrunA17_Chr5g0427401 50.000 68 34 0 9 76 2 69 4.87e-16 74.3
Msa1270080 MtrunA17_Chr8g0351041 47.436 78 41 0 10 87 3 80 6.98e-16 72.8
Msa1270080 MtrunA17_Chr4g0061691 47.826 69 35 1 9 76 2 70 9.51e-16 73.9
Msa1270080 MtrunA17_Chr2g0284911 40.385 104 61 1 9 112 17 119 1.07e-15 74.3
Msa1270080 MtrunA17_Chr1g0204111 50.000 68 34 0 9 76 18 85 1.40e-15 73.6
Msa1270080 MtrunA17_Chr2g0279821 48.529 68 35 0 9 76 2 69 1.43e-15 73.6
Msa1270080 MtrunA17_Chr3g0093131 34.266 143 77 4 26 159 36 170 1.97e-15 72.0
Msa1270080 MtrunA17_Chr7g0246431 50.746 67 33 0 10 76 3 69 2.72e-15 72.0
Msa1270080 MtrunA17_Chr8g0351031 47.436 78 41 0 10 87 3 80 3.47e-15 72.0
Msa1270080 MtrunA17_Chr8g0366231 40.964 83 46 1 9 91 2 81 9.35e-15 71.2
Msa1270080 MtrunA17_Chr4g0049541 47.059 68 36 0 9 76 2 69 1.14e-14 70.9
Msa1270080 MtrunA17_Chr4g0020221 50.000 68 34 0 9 76 2 69 1.68e-14 70.9
Msa1270080 MtrunA17_Chr5g0411691 48.529 68 35 0 9 76 2 69 1.70e-14 70.5
Msa1270080 MtrunA17_Chr5g0420081 45.070 71 36 1 9 79 2 69 2.50e-14 70.1
Msa1270080 MtrunA17_Chr8g0345001 31.818 154 92 3 8 155 17 163 3.41e-14 68.6
Msa1270080 MtrunA17_Chr5g0425191 54.717 53 24 0 9 61 2 54 4.69e-14 66.2
Msa1270080 MtrunA17_Chr2g0308251 43.243 74 42 0 9 82 2 75 5.79e-14 65.5
Msa1270080 MtrunA17_Chr1g0173161 50.820 61 30 0 9 69 2 62 6.13e-14 65.5
Msa1270080 MtrunA17_Chr5g0420091 47.826 69 35 1 9 76 2 70 7.50e-14 68.2
Msa1270080 MtrunA17_Chr6g0455511 46.377 69 36 1 9 76 2 70 1.32e-13 68.2
Msa1270080 MtrunA17_Chr7g0220111 46.377 69 36 1 9 76 2 70 1.64e-13 67.8
Msa1270080 MtrunA17_Chr7g0220121 43.478 69 38 1 9 76 2 70 1.70e-13 67.8
Msa1270080 MtrunA17_Chr1g0164791 47.143 70 35 1 9 76 2 71 1.76e-13 67.4
Msa1270080 MtrunA17_Chr4g0025531 32.317 164 99 3 1 164 1 152 1.85e-13 67.4
Msa1270080 MtrunA17_Chr4g0044071 50.877 57 28 0 9 65 2 58 1.93e-13 64.7
Msa1270080 MtrunA17_Chr5g0404951 47.143 70 35 1 9 76 2 71 2.15e-13 67.4
Msa1270080 MtrunA17_Chr8g0377561 51.786 56 27 0 9 64 2 57 2.33e-13 64.3
Msa1270080 MtrunA17_Chr3g0122251 40.206 97 55 1 9 105 2 95 4.34e-13 66.6
Msa1270080 MtrunA17_Chr1g0159661 42.857 70 38 1 9 76 2 71 6.24e-13 65.1
Msa1270080 MtrunA17_Chr4g0061671 49.123 57 29 0 9 65 2 58 9.39e-13 64.7
Msa1270080 MtrunA17_Chr7g0246381 50.877 57 28 0 9 65 2 58 1.25e-12 61.6
Msa1270080 MtrunA17_Chr5g0427921 47.368 57 30 0 9 65 2 58 1.50e-12 60.8
Msa1270080 MtrunA17_Chr3g0142191 46.032 63 34 0 9 71 2 64 4.56e-12 63.5
Msa1270080 MtrunA17_Chr3g0125241 41.429 70 39 1 9 76 27 96 5.10e-12 63.2
Msa1270080 MtrunA17_Chr4g0060841 27.429 175 107 8 9 172 2 167 3.93e-11 62.0
Msa1270080 MtrunA17_Chr5g0417661 40.580 69 35 1 9 77 57 119 4.59e-11 58.9
Msa1270080 MtrunA17_Chr1g0166611 34.234 111 63 2 20 130 17 117 9.10e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1270080 AT5G60440.1 54.497 189 77 4 5 189 3 186 1.76e-59 190
Msa1270080 AT2G24840.1 47.561 164 75 4 6 163 60 218 1.76e-41 142
Msa1270080 AT4G36590.1 46.914 162 80 2 5 160 3 164 1.37e-40 140
Msa1270080 AT1G65360.1 39.035 228 122 8 5 225 3 220 8.48e-39 134
Msa1270080 AT1G01530.1 40.609 197 95 5 4 192 2 184 2.33e-38 134
Msa1270080 AT2G34440.1 45.299 117 55 2 9 121 2 113 5.74e-26 99.8
Msa1270080 AT3G66656.1 41.732 127 70 1 9 131 2 128 3.25e-25 98.2
Msa1270080 AT3G04100.1 30.263 152 102 2 2 149 7 158 2.51e-22 91.3
Msa1270080 AT1G72350.1 35.374 147 62 4 9 155 43 156 1.50e-20 87.0
Msa1270080 AT1G28460.1 30.058 173 111 3 5 174 4 169 2.09e-18 80.1
Msa1270080 AT4G22950.2 50.000 76 38 0 10 85 3 78 4.23e-18 79.3
Msa1270080 AT4G09960.2 46.512 86 45 1 9 93 2 87 5.23e-18 80.1
Msa1270080 AT4G09960.1 46.512 86 45 1 9 93 2 87 6.01e-18 80.1
Msa1270080 AT4G09960.6 46.512 86 45 1 9 93 3 88 6.63e-18 80.1
Msa1270080 AT4G09960.5 46.512 86 45 1 9 93 12 97 8.90e-18 79.7
Msa1270080 AT2G45650.1 52.941 68 32 0 9 76 2 69 1.08e-17 79.7
Msa1270080 AT4G09960.3 46.512 86 45 1 9 93 28 113 1.33e-17 79.7
Msa1270080 AT4G22950.3 50.000 76 38 0 10 85 3 78 1.48e-17 79.0
Msa1270080 AT4G22950.1 50.000 76 38 0 10 85 3 78 1.48e-17 79.0
Msa1270080 AT4G09960.4 46.512 86 45 1 9 93 97 182 3.41e-17 79.7
Msa1270080 AT1G29962.1 29.070 172 115 4 5 169 4 175 4.79e-17 76.6
Msa1270080 AT4G18960.1 42.308 104 49 2 5 108 15 107 1.33e-16 77.0
Msa1270080 AT2G22540.3 35.465 172 86 7 9 161 2 167 1.76e-16 76.3
Msa1270080 AT2G22540.1 35.465 172 86 7 9 161 2 167 1.76e-16 76.3
Msa1270080 AT2G45660.2 50.000 68 34 0 10 77 3 70 2.47e-16 74.3
Msa1270080 AT3G61120.1 51.471 68 33 0 9 76 2 69 5.88e-16 75.1
Msa1270080 AT2G42830.1 50.704 71 35 0 6 76 14 84 6.12e-16 75.1
Msa1270080 AT3G57230.2 47.059 68 36 0 9 76 2 69 6.25e-16 72.8
Msa1270080 AT2G42830.2 50.704 71 35 0 6 76 14 84 6.29e-16 75.1
Msa1270080 AT2G45660.1 50.000 68 34 0 10 77 3 70 6.52e-16 74.3
Msa1270080 AT3G58780.1 50.704 71 35 0 6 76 14 84 6.55e-16 75.1
Msa1270080 AT3G58780.5 50.704 71 35 0 6 76 20 90 7.27e-16 74.7
Msa1270080 AT1G22130.1 36.190 105 66 1 9 112 2 106 8.19e-16 75.9
Msa1270080 AT5G62165.14 49.254 67 34 0 10 76 3 69 1.00e-15 71.2
Msa1270080 AT3G58780.4 50.704 71 35 0 6 76 14 84 1.13e-15 74.7
Msa1270080 AT1G77980.1 37.143 105 65 1 9 112 2 106 1.62e-15 74.7
Msa1270080 AT1G77950.3 46.053 76 39 2 9 83 2 76 1.66e-15 73.9
Msa1270080 AT1G77950.2 46.053 76 39 2 9 83 2 76 1.66e-15 73.9
Msa1270080 AT1G77950.1 46.053 76 39 2 9 83 2 76 1.66e-15 73.9
Msa1270080 AT1G77950.4 46.053 76 39 2 9 83 2 76 1.66e-15 73.9
Msa1270080 AT4G24540.1 34.459 148 80 5 9 156 2 132 1.71e-15 73.2
Msa1270080 AT5G62165.6 49.254 67 34 0 10 76 3 69 1.90e-15 71.6
Msa1270080 AT5G62165.9 49.254 67 34 0 10 76 3 69 1.90e-15 71.6
Msa1270080 AT5G62165.7 49.254 67 34 0 10 76 3 69 1.90e-15 71.6
Msa1270080 AT5G62165.8 49.254 67 34 0 10 76 3 69 1.90e-15 71.6
Msa1270080 AT5G62165.13 49.254 67 34 0 10 76 3 69 1.90e-15 71.6
Msa1270080 AT3G57230.1 47.059 68 36 0 9 76 2 69 2.38e-15 73.2
Msa1270080 AT3G57230.4 47.059 68 36 0 9 76 2 69 2.38e-15 73.2
Msa1270080 AT5G62165.17 49.254 67 34 0 10 76 3 69 2.40e-15 71.6
Msa1270080 AT5G62165.12 49.254 67 34 0 10 76 3 69 2.40e-15 71.6
Msa1270080 AT5G62165.11 49.254 67 34 0 10 76 3 69 2.40e-15 71.6
Msa1270080 AT3G57390.3 48.529 68 35 0 9 76 2 69 3.59e-15 72.4
Msa1270080 AT4G11880.2 48.611 72 36 1 10 80 3 74 4.29e-15 71.2
Msa1270080 AT4G11880.3 48.611 72 36 1 10 80 3 74 4.29e-15 71.2
Msa1270080 AT1G69120.2 40.659 91 51 1 9 99 2 89 4.37e-15 72.4
Msa1270080 AT2G22630.1 47.059 68 36 0 9 76 2 69 5.33e-15 72.0
Msa1270080 AT2G22630.2 47.059 68 36 0 9 76 2 69 5.33e-15 72.0
Msa1270080 AT5G51870.2 50.746 67 33 0 10 76 3 69 5.80e-15 70.9
Msa1270080 AT1G17310.1 35.119 168 68 5 8 170 47 178 5.87e-15 71.6
Msa1270080 AT3G57390.1 48.529 68 35 0 9 76 2 69 6.33e-15 72.4
Msa1270080 AT5G60910.1 49.296 71 33 1 9 79 2 69 6.43e-15 72.0
Msa1270080 AT1G69120.1 40.659 91 51 1 9 99 2 89 6.59e-15 72.4
Msa1270080 AT5G62165.10 49.254 67 34 0 10 76 3 69 6.89e-15 71.2
Msa1270080 AT5G62165.4 49.254 67 34 0 10 76 3 69 6.89e-15 71.2
Msa1270080 AT1G17310.2 35.119 168 68 5 8 170 58 189 7.40e-15 71.6
Msa1270080 AT5G62165.3 49.254 67 34 0 10 76 3 69 8.69e-15 71.2
Msa1270080 AT5G62165.1 49.254 67 34 0 10 76 3 69 8.69e-15 71.2
Msa1270080 AT5G62165.2 49.254 67 34 0 10 76 3 69 8.69e-15 71.2
Msa1270080 AT5G13790.1 40.777 103 56 2 9 111 2 99 9.02e-15 72.0
Msa1270080 AT3G30260.1 28.485 165 100 4 9 172 2 149 9.46e-15 71.6
Msa1270080 AT5G13790.2 41.935 93 45 1 9 101 2 85 9.72e-15 72.0
Msa1270080 AT4G11880.4 48.611 72 36 1 10 80 3 74 1.01e-14 71.2
Msa1270080 AT4G11880.1 48.611 72 36 1 10 80 3 74 1.01e-14 71.2
Msa1270080 AT5G51870.1 50.746 67 33 0 10 76 3 69 1.02e-14 70.9
Msa1270080 AT5G51870.5 47.222 72 38 0 5 76 21 92 1.04e-14 70.5
Msa1270080 AT1G26310.1 47.826 69 35 1 9 76 2 70 1.04e-14 71.6
Msa1270080 AT5G51860.2 50.746 67 33 0 10 76 3 69 1.53e-14 70.5
Msa1270080 AT5G51860.1 50.746 67 33 0 10 76 3 69 1.71e-14 70.5
Msa1270080 AT5G51870.4 50.746 67 33 0 10 76 3 69 1.74e-14 70.5
Msa1270080 AT5G51870.3 50.746 67 33 0 10 76 13 79 1.98e-14 70.5
Msa1270080 AT1G28450.1 29.371 143 95 3 5 141 4 146 2.12e-14 69.7
Msa1270080 AT5G10140.2 47.826 69 35 1 9 76 2 70 2.25e-14 68.9
Msa1270080 AT4G37940.4 45.588 68 37 0 9 76 2 69 2.26e-14 70.1
Msa1270080 AT4G37940.3 45.588 68 37 0 9 76 2 69 2.39e-14 69.3
Msa1270080 AT4G37940.1 45.588 68 37 0 9 76 2 69 2.69e-14 70.1
Msa1270080 AT5G10140.4 47.826 69 35 1 9 76 2 70 3.02e-14 68.9
Msa1270080 AT5G10140.1 47.826 69 35 1 9 76 2 70 3.41e-14 69.3
Msa1270080 AT5G10140.3 47.826 69 35 1 9 76 2 70 3.72e-14 68.9
Msa1270080 AT2G22540.2 34.884 172 82 8 9 161 2 162 7.19e-14 68.9
Msa1270080 AT2G14210.1 46.377 69 36 1 9 76 2 70 8.84e-14 68.9
Msa1270080 AT2G14210.2 46.377 69 36 1 9 76 2 70 1.04e-13 68.6
Msa1270080 AT1G24260.3 28.631 241 136 10 9 234 2 221 1.12e-13 68.6
Msa1270080 AT3G54340.1 47.619 63 33 0 9 71 2 64 1.51e-13 68.2
Msa1270080 AT3G02310.2 47.826 69 35 1 9 76 2 70 1.64e-13 67.4
Msa1270080 AT1G24260.2 26.772 254 138 10 9 234 2 235 1.77e-13 68.2
Msa1270080 AT5G20240.2 48.387 62 32 0 9 70 2 63 1.78e-13 66.2
Msa1270080 AT5G23260.4 43.617 94 45 3 5 90 12 105 3.01e-13 67.8
Msa1270080 AT5G23260.1 43.617 94 45 3 5 90 12 105 3.06e-13 67.8
Msa1270080 AT5G15800.1 46.377 69 36 1 9 76 2 70 3.08e-13 67.4
Msa1270080 AT3G02310.1 47.826 69 35 1 9 76 2 70 3.33e-13 67.4
Msa1270080 AT5G15800.2 46.377 69 36 1 9 76 2 70 4.36e-13 67.4
Msa1270080 AT3G58780.2 51.667 60 29 0 6 65 14 73 4.58e-13 67.0
Msa1270080 AT5G23260.3 43.182 88 44 2 9 90 2 89 4.83e-13 67.0
Msa1270080 AT5G23260.2 43.182 88 44 2 9 90 2 89 5.01e-13 67.0
Msa1270080 AT5G20240.1 48.387 62 32 0 9 70 2 63 5.25e-13 66.2
Msa1270080 AT3G58780.3 51.667 60 29 0 6 65 14 73 5.64e-13 67.0
Msa1270080 AT1G24260.1 26.562 256 135 11 9 234 2 234 9.99e-13 66.2
Msa1270080 AT2G03710.3 51.786 56 27 0 9 64 2 57 1.23e-12 64.7
Msa1270080 AT1G47760.1 34.483 116 61 3 9 123 2 103 1.95e-12 64.3
Msa1270080 AT2G03710.2 51.786 56 27 0 9 64 2 57 3.27e-12 64.7
Msa1270080 AT2G03710.1 51.786 56 27 0 9 64 2 57 3.44e-12 64.7
Msa1270080 AT5G65050.2 43.478 69 38 1 9 76 2 70 7.16e-12 62.4
Msa1270080 AT5G65070.4 40.580 69 40 1 9 76 2 70 9.18e-12 61.6
Msa1270080 AT5G65050.5 43.478 69 38 1 9 76 2 70 1.07e-11 62.0
Msa1270080 AT5G65050.3 43.478 69 38 1 9 76 2 70 1.13e-11 62.4
Msa1270080 AT5G65050.1 43.478 69 38 1 9 76 2 70 1.13e-11 62.0
Msa1270080 AT1G71692.1 41.429 70 40 1 9 77 2 71 1.47e-11 62.4
Msa1270080 AT5G65060.3 43.478 69 38 1 9 76 2 70 2.08e-11 61.6
Msa1270080 AT5G65060.2 43.478 69 38 1 9 76 2 70 2.18e-11 61.2
Msa1270080 AT5G65070.1 40.580 69 40 1 9 76 2 70 2.22e-11 61.6
Msa1270080 AT5G65060.1 43.478 69 38 1 9 76 2 70 2.71e-11 61.2
Msa1270080 AT5G65070.5 40.580 69 40 1 9 76 2 70 3.41e-11 61.2
Msa1270080 AT5G65070.2 40.580 69 40 1 9 76 2 70 3.55e-11 61.6
Msa1270080 AT4G37435.1 37.349 83 46 2 9 85 2 84 5.95e-11 60.1
Msa1270080 AT1G46408.1 35.294 119 68 4 10 119 5 123 8.58e-11 60.8

Find 55 sgRNAs with CRISPR-Local

Find 76 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGTTTGGTTTCAACAATA+TGG 0.234944 8_3:+3565061 Msa1270080:CDS
ATTTGAGTTTGCGGAGGATT+TGG 0.289021 8_3:-3564996 None:intergenic
TCTTCTCCATGTCCAGTAAC+TGG 0.302941 8_3:-3564737 None:intergenic
AGGCGACCGAGGCTCAATTT+TGG 0.319875 8_3:+3564790 Msa1270080:CDS
TTGTTTGGTTTCAACAATAT+GGG 0.345119 8_3:+3565062 Msa1270080:CDS
GACTCAGATCAACCAGTTAC+TGG 0.372422 8_3:+3564725 Msa1270080:CDS
ATGTTGCAGTCTCATTTGTT+TGG 0.376821 8_3:+3565047 Msa1270080:CDS
TGCTGATAGGCTTGTAATCC+AGG 0.383576 8_3:+3564902 Msa1270080:CDS
TGGTGGGCTAGTCCCGTTGA+TGG 0.399835 8_3:+3564810 Msa1270080:CDS
ATTGCATGGTACCATTGTTT+TGG 0.409018 8_3:-3564653 None:intergenic
TTTGGATGAGACTAAGAAAC+TGG 0.433965 8_3:+3564869 Msa1270080:CDS
GCGGAGGATTTGGTTGATGA+TGG 0.439291 8_3:-3564986 None:intergenic
GTCCCGTTGATGGGATGAAT+AGG 0.441524 8_3:+3564820 Msa1270080:CDS
TCCCGTTGATGGGATGAATA+GGG 0.449445 8_3:+3564821 Msa1270080:CDS
AACAAATGAGACTGCAACAT+AGG 0.451158 8_3:-3565044 None:intergenic
TGGTTGCACATCATGCTGAT+AGG 0.453644 8_3:+3564889 Msa1270080:CDS
CCTCGGTCGCCTTGCGCAAG+TGG 0.465805 8_3:-3564779 None:intergenic
CTCTATGACCGTATCAACAT+TGG 0.477809 8_3:-3564607 None:intergenic
GCCCTATTCATCCCATCAAC+GGG 0.478546 8_3:-3564822 None:intergenic
GGAGGTGGATATGGACCCTC+TGG 0.496777 8_3:+3565089 Msa1270080:CDS
ATGATGGAGAGGCATGTTAG+AGG 0.501643 8_3:-3564970 None:intergenic
AGTATTGAGCTCGCGCACAT+TGG 0.504609 8_3:-3564697 None:intergenic
GCTGGAAACATTTGAGTTTG+CGG 0.508183 8_3:-3565005 None:intergenic
ACTGAGAGTGCAAAGCTCAC+TGG 0.526727 8_3:-3564523 None:intergenic
GGTGGGCTAGTCCCGTTGAT+GGG 0.535239 8_3:+3564811 Msa1270080:CDS
GGCCCTATTCATCCCATCAA+CGG 0.536262 8_3:-3564823 None:intergenic
TCTATGACCGTATCAACATT+GGG 0.539713 8_3:-3564606 None:intergenic
TGGCCAACCCAATGTTGATA+CGG 0.545005 8_3:+3564599 Msa1270080:CDS
CCACTTGCGCAAGGCGACCG+AGG 0.551221 8_3:+3564779 Msa1270080:CDS
GCTCGCGCACATTGGCGCTA+CGG 0.552531 8_3:-3564689 None:intergenic
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 8_3:+3564487 Msa1270080:CDS
TGTTTGGTTTCAACAATATG+GGG 0.556331 8_3:+3565063 Msa1270080:CDS
ATTCAACCATGTCGAGTGGA+AGG 0.567884 8_3:+3564400 None:intergenic
ACAAATGAGACTGCAACATA+GGG 0.571944 8_3:-3565043 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 8_3:+3564486 Msa1270080:CDS
GATCAACCAGTTACTGGACA+TGG 0.586550 8_3:+3564731 Msa1270080:CDS
AATGAAAATACCTTCTCCCC+AGG 0.587583 8_3:-3564576 None:intergenic
AGCCCACCAAAATTGAGCCT+CGG 0.591317 8_3:-3564796 None:intergenic
TGACCGTATCAACATTGGGT+TGG 0.600758 8_3:-3564602 None:intergenic
TGGTTTGAGTAGGAGCACCC+TGG 0.605264 8_3:-3564920 None:intergenic
GTTTGGTTTCAACAATATGG+GGG 0.607401 8_3:+3565064 Msa1270080:CDS
AGTGAGCTTTGCACTCTCAG+TGG 0.609659 8_3:+3564525 Msa1270080:CDS
AGAGCTGAACCACTTGCGCA+AGG 0.610527 8_3:+3564770 Msa1270080:CDS
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 8_3:-3564500 None:intergenic
GGATTTGGTTGATGATGGAG+AGG 0.611456 8_3:-3564981 None:intergenic
TGTGATTCAACCATGTCGAG+TGG 0.620546 8_3:+3564396 None:intergenic
GCTGATAGGCTTGTAATCCA+GGG 0.636302 8_3:+3564903 Msa1270080:CDS
TTTGGTTTCAACAATATGGG+GGG 0.638238 8_3:+3565065 Msa1270080:CDS
TGGTACCATGCAATTCATTG+AGG 0.638950 8_3:+3564662 Msa1270080:CDS
GTGAGCCTCAATGAATTGCA+TGG 0.640763 8_3:-3564667 None:intergenic
GGAAACATTTGAGTTTGCGG+AGG 0.647148 8_3:-3565002 None:intergenic
CGAGTCCCACACCAAAACAA+TGG 0.664538 8_3:+3564642 Msa1270080:CDS
TCGGATCAAAAGAATCCAGA+GGG 0.678771 8_3:-3565104 None:intergenic
CTCGGATCAAAAGAATCCAG+AGG 0.678961 8_3:-3565105 None:intergenic
TCGAGTGGAAGGAAAAGCCG+AGG 0.691796 8_3:+3564411 Msa1270080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCATCTCAATCTTT+TGG - chr8_3:3564440-3564459 None:intergenic 20.0%
!!! CTTTTTGAAAAATTCAAGTT+GGG - chr8_3:3564847-3564866 None:intergenic 20.0%
!!! CCTTTTTGAAAAATTCAAGT+TGG - chr8_3:3564848-3564867 None:intergenic 25.0%
!!! CCAACTTGAATTTTTCAAAA+AGG + chr8_3:3564845-3564864 Msa1270080:CDS 25.0%
!!! TGAATTTTTCAAAAAGGCTT+TGG + chr8_3:3564851-3564870 Msa1270080:CDS 25.0%
! ATTTCCAACAAAAAATGGAA+TGG - chr8_3:3564943-3564962 None:intergenic 25.0%
!!! ATTCCATTTTTTGTTGGAAA+TGG + chr8_3:3564942-3564961 Msa1270080:CDS 25.0%
!! TTTGTTTGGTTTCAACAATA+TGG + chr8_3:3565061-3565080 Msa1270080:CDS 25.0%
!! TTGTTTGGTTTCAACAATAT+GGG + chr8_3:3565062-3565081 Msa1270080:CDS 25.0%
AAAAATGGAATGGTTTGAGT+AGG - chr8_3:3564933-3564952 None:intergenic 30.0%
!!! CAAACCATTCCATTTTTTGT+TGG + chr8_3:3564936-3564955 Msa1270080:CDS 30.0%
GAACCATTTCCAACAAAAAA+TGG - chr8_3:3564948-3564967 None:intergenic 30.0%
! TGTTTGGTTTCAACAATATG+GGG + chr8_3:3565063-3565082 Msa1270080:CDS 30.0%
TCTATGACCGTATCAACATT+GGG - chr8_3:3564609-3564628 None:intergenic 35.0%
! ATTGCATGGTACCATTGTTT+TGG - chr8_3:3564656-3564675 None:intergenic 35.0%
TTTGGATGAGACTAAGAAAC+TGG + chr8_3:3564869-3564888 Msa1270080:CDS 35.0%
ACAAATGAGACTGCAACATA+GGG - chr8_3:3565046-3565065 None:intergenic 35.0%
AACAAATGAGACTGCAACAT+AGG - chr8_3:3565047-3565066 None:intergenic 35.0%
ATGTTGCAGTCTCATTTGTT+TGG + chr8_3:3565047-3565066 Msa1270080:CDS 35.0%
! GTTTGGTTTCAACAATATGG+GGG + chr8_3:3565064-3565083 Msa1270080:CDS 35.0%
! TTTGGTTTCAACAATATGGG+GGG + chr8_3:3565065-3565084 Msa1270080:CDS 35.0%
AATGAAAATACCTTCTCCCC+AGG - chr8_3:3564579-3564598 None:intergenic 40.0%
!!! GGGGAGAAGGTATTTTCATT+TGG + chr8_3:3564579-3564598 Msa1270080:CDS 40.0%
CTCTATGACCGTATCAACAT+TGG - chr8_3:3564610-3564629 None:intergenic 40.0%
!!! TGGTACCATTGTTTTGGTGT+GGG - chr8_3:3564650-3564669 None:intergenic 40.0%
!!! ATGGTACCATTGTTTTGGTG+TGG - chr8_3:3564651-3564670 None:intergenic 40.0%
TGGTACCATGCAATTCATTG+AGG + chr8_3:3564662-3564681 Msa1270080:CDS 40.0%
! ATTTGAGTTTGCGGAGGATT+TGG - chr8_3:3564999-3565018 None:intergenic 40.0%
! GCTGGAAACATTTGAGTTTG+CGG - chr8_3:3565008-3565027 None:intergenic 40.0%
!! GGGTTCTGAAAAAATTGTGC+TGG - chr8_3:3565026-3565045 None:intergenic 40.0%
! TCTCAATCTTTTGGCGACCT+CGG - chr8_3:3564431-3564450 None:intergenic 45.0%
CTTTCTTGAAGAGCCCACTA+CGG - chr8_3:3564503-3564522 None:intergenic 45.0%
!! CTCTCGTTGTTTTCTCACCT+GGG + chr8_3:3564559-3564578 Msa1270080:CDS 45.0%
!! TCTCGTTGTTTTCTCACCTG+GGG + chr8_3:3564560-3564579 Msa1270080:CDS 45.0%
TGGCCAACCCAATGTTGATA+CGG + chr8_3:3564599-3564618 Msa1270080:CDS 45.0%
TGACCGTATCAACATTGGGT+TGG - chr8_3:3564605-3564624 None:intergenic 45.0%
GTGAGCCTCAATGAATTGCA+TGG - chr8_3:3564670-3564689 None:intergenic 45.0%
GACTCAGATCAACCAGTTAC+TGG + chr8_3:3564725-3564744 Msa1270080:CDS 45.0%
GATCAACCAGTTACTGGACA+TGG + chr8_3:3564731-3564750 Msa1270080:CDS 45.0%
TCTTCTCCATGTCCAGTAAC+TGG - chr8_3:3564740-3564759 None:intergenic 45.0%
! TCCCGTTGATGGGATGAATA+GGG + chr8_3:3564821-3564840 Msa1270080:CDS 45.0%
TGGTTGCACATCATGCTGAT+AGG + chr8_3:3564889-3564908 Msa1270080:CDS 45.0%
TGCTGATAGGCTTGTAATCC+AGG + chr8_3:3564902-3564921 Msa1270080:CDS 45.0%
GCTGATAGGCTTGTAATCCA+GGG + chr8_3:3564903-3564922 Msa1270080:CDS 45.0%
! ATGATGGAGAGGCATGTTAG+AGG - chr8_3:3564973-3564992 None:intergenic 45.0%
!! GGATTTGGTTGATGATGGAG+AGG - chr8_3:3564984-3565003 None:intergenic 45.0%
! GGAAACATTTGAGTTTGCGG+AGG - chr8_3:3565005-3565024 None:intergenic 45.0%
! ACTGAGAGTGCAAAGCTCAC+TGG - chr8_3:3564526-3564545 None:intergenic 50.0%
AGTGAGCTTTGCACTCTCAG+TGG + chr8_3:3564525-3564544 Msa1270080:CDS 50.0%
!! GCTCTCGTTGTTTTCTCACC+TGG + chr8_3:3564558-3564577 Msa1270080:CDS 50.0%
! TGTTTTCTCACCTGGGGAGA+AGG + chr8_3:3564566-3564585 Msa1270080:CDS 50.0%
CGAGTCCCACACCAAAACAA+TGG + chr8_3:3564642-3564661 Msa1270080:CDS 50.0%
! AGTATTGAGCTCGCGCACAT+TGG - chr8_3:3564700-3564719 None:intergenic 50.0%
!! GACCGAGGCTCAATTTTGGT+GGG + chr8_3:3564794-3564813 Msa1270080:CDS 50.0%
AGCCCACCAAAATTGAGCCT+CGG - chr8_3:3564799-3564818 None:intergenic 50.0%
! GTCCCGTTGATGGGATGAAT+AGG + chr8_3:3564820-3564839 Msa1270080:CDS 50.0%
GCCCTATTCATCCCATCAAC+GGG - chr8_3:3564825-3564844 None:intergenic 50.0%
GGCCCTATTCATCCCATCAA+CGG - chr8_3:3564826-3564845 None:intergenic 50.0%
!! GCGGAGGATTTGGTTGATGA+TGG - chr8_3:3564989-3565008 None:intergenic 50.0%
GGTTTCAACAATATGGGGGG+AGG + chr8_3:3565068-3565087 Msa1270080:CDS 50.0%
TTCAACAATATGGGGGGAGG+AGG + chr8_3:3565071-3565090 Msa1270080:CDS 50.0%
TCGAGTGGAAGGAAAAGCCG+AGG + chr8_3:3564411-3564430 Msa1270080:CDS 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG + chr8_3:3564486-3564505 Msa1270080:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG + chr8_3:3564487-3564506 Msa1270080:CDS 55.0%
AGAGCTGAACCACTTGCGCA+AGG + chr8_3:3564770-3564789 Msa1270080:CDS 55.0%
! AGGCGACCGAGGCTCAATTT+TGG + chr8_3:3564790-3564809 Msa1270080:CDS 55.0%
! CGACCGAGGCTCAATTTTGG+TGG + chr8_3:3564793-3564812 Msa1270080:CDS 55.0%
!! TGGTTTGAGTAGGAGCACCC+TGG - chr8_3:3564923-3564942 None:intergenic 55.0%
AACAATATGGGGGGAGGAGG+TGG + chr8_3:3565074-3565093 Msa1270080:CDS 55.0%
!! TGGTGGGCTAGTCCCGTTGA+TGG + chr8_3:3564810-3564829 Msa1270080:CDS 60.0%
!! GGTGGGCTAGTCCCGTTGAT+GGG + chr8_3:3564811-3564830 Msa1270080:CDS 60.0%
ATGGGGGGAGGAGGTGGATA+TGG + chr8_3:3565080-3565099 Msa1270080:CDS 60.0%
GGAGGTGGATATGGACCCTC+TGG + chr8_3:3565089-3565108 Msa1270080:CDS 60.0%
GCTCGCGCACATTGGCGCTA+CGG - chr8_3:3564692-3564711 None:intergenic 65.0%
CCTCGGTCGCCTTGCGCAAG+TGG - chr8_3:3564782-3564801 None:intergenic 70.0%
CCACTTGCGCAAGGCGACCG+AGG + chr8_3:3564779-3564798 Msa1270080:CDS 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 3564408 3565121 3564408 ID=Msa1270080;Name=Msa1270080
chr8_3 mRNA 3564408 3565121 3564408 ID=Msa1270080-mRNA-1;Parent=Msa1270080;Name=Msa1270080-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|-1|0|1|-1|1|1|0|237
chr8_3 exon 3564408 3565121 3564408 ID=Msa1270080-mRNA-1:exon:1112;Parent=Msa1270080-mRNA-1
chr8_3 CDS 3564408 3565121 3564408 ID=Msa1270080-mRNA-1:cds;Parent=Msa1270080-mRNA-1
Gene Sequence

>Msa1270080

ATGTCGAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACTCTCAGTGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGGGAGAAGGTATTTTCATTTGGCCAACCCAATGTTGATACGGTCATAGAGCGTTATCTCTCTCGAGTCCCACACCAAAACAATGGTACCATGCAATTCATTGAGGCTCACCGTAGCGCCAATGTGCGCGAGCTCAATACTCAGCTGACTCAGATCAACCAGTTACTGGACATGGAGAAGAAACGTGCTGAAGAGCTGAACCACTTGCGCAAGGCGACCGAGGCTCAATTTTGGTGGGCTAGTCCCGTTGATGGGATGAATAGGGCCCAACTTGAATTTTTCAAAAAGGCTTTGGATGAGACTAAGAAACTGGTTGCACATCATGCTGATAGGCTTGTAATCCAGGGTGCTCCTACTCAAACCATTCCATTTTTTGTTGGAAATGGTTCATCCTCTAACATGCCTCTCCATCATCAACCAAATCCTCCGCAAACTCAAATGTTTCCAGCACAATTTTTTCAGAACCCTATGTTGCAGTCTCATTTGTTTGGTTTCAACAATATGGGGGGAGGAGGTGGATATGGACCCTCTGGATTCTTTTGA
Protein sequence

>Msa1270080

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLSGADVALVVFSPGEKVFSFGQPNVDTVIERYLSRVPHQNNGTMQFIEAHRSANVRELNTQLTQINQLLDMEKKRAEELNHLRKATEAQFWWASPVDGMNRAQLEFFKKALDETKKLVAHHADRLVIQGAPTQTIPFFVGNGSSSNMPLHHQPNPPQTQMFPAQFFQNPMLQSHLFGFNNMGGGGGYGPSGFF*