Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1270800 | XP_013444240.1 | 96.056 | 431 | 14 | 2 | 1 | 429 | 1 | 430 | 0.0 | 856 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1270800 | sp|Q8S3D2|BH087_ARATH | 47.720 | 329 | 130 | 13 | 110 | 425 | 72 | 371 | 1.19e-69 | 228 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1270800 | A0A072TLG8 | 96.056 | 431 | 14 | 2 | 1 | 429 | 1 | 430 | 0.0 | 856 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1270800 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1270800 | MtrunA17_Chr8g0341421 | 96.056 | 431 | 14 | 2 | 1 | 429 | 1 | 430 | 0.0 | 856 |
| Msa1270800 | MtrunA17_Chr2g0330641 | 50.217 | 460 | 107 | 22 | 1 | 417 | 1 | 381 | 2.07e-100 | 305 |
| Msa1270800 | MtrunA17_Chr8g0384141 | 64.948 | 97 | 28 | 2 | 296 | 391 | 87 | 178 | 3.62e-36 | 134 |
| Msa1270800 | MtrunA17_Chr3g0134001 | 46.528 | 144 | 59 | 2 | 269 | 398 | 103 | 242 | 3.91e-36 | 134 |
| Msa1270800 | MtrunA17_Chr8g0375121 | 52.239 | 134 | 50 | 2 | 270 | 393 | 69 | 198 | 8.83e-29 | 113 |
| Msa1270800 | MtrunA17_Chr5g0402161 | 62.626 | 99 | 33 | 1 | 295 | 393 | 109 | 203 | 8.52e-28 | 110 |
| Msa1270800 | MtrunA17_Chr7g0243041 | 56.923 | 65 | 28 | 0 | 333 | 397 | 32 | 96 | 8.25e-20 | 85.9 |
| Msa1270800 | MtrunA17_Chr5g0435021 | 60.714 | 56 | 22 | 0 | 334 | 389 | 225 | 280 | 6.28e-17 | 81.3 |
| Msa1270800 | MtrunA17_Chr1g0152651 | 60.714 | 56 | 22 | 0 | 336 | 391 | 283 | 338 | 6.34e-17 | 82.0 |
| Msa1270800 | MtrunA17_Chr1g0207301 | 48.000 | 75 | 39 | 0 | 317 | 391 | 278 | 352 | 9.90e-16 | 78.6 |
| Msa1270800 | MtrunA17_Chr1g0179061 | 48.649 | 74 | 36 | 1 | 319 | 392 | 164 | 235 | 2.08e-15 | 75.9 |
| Msa1270800 | MtrunA17_Chr5g0393721 | 53.448 | 58 | 27 | 0 | 334 | 391 | 231 | 288 | 2.62e-15 | 76.6 |
| Msa1270800 | MtrunA17_Chr1g0207311 | 53.448 | 58 | 27 | 0 | 334 | 391 | 203 | 260 | 6.48e-15 | 75.1 |
| Msa1270800 | MtrunA17_Chr3g0134741 | 49.231 | 65 | 33 | 0 | 327 | 391 | 229 | 293 | 1.76e-14 | 73.9 |
| Msa1270800 | MtrunA17_Chr4g0074161 | 55.357 | 56 | 25 | 0 | 334 | 389 | 213 | 268 | 1.31e-13 | 72.0 |
| Msa1270800 | MtrunA17_Chr2g0311101 | 47.887 | 71 | 33 | 1 | 322 | 392 | 168 | 234 | 1.33e-13 | 71.2 |
| Msa1270800 | MtrunA17_Chr1g0190731 | 55.357 | 56 | 25 | 0 | 334 | 389 | 200 | 255 | 2.22e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1270800 | AT3G21330.1 | 47.720 | 329 | 130 | 13 | 110 | 425 | 72 | 371 | 1.21e-70 | 228 |
| Msa1270800 | AT4G00120.1 | 54.386 | 114 | 45 | 3 | 299 | 411 | 88 | 195 | 2.92e-31 | 119 |
| Msa1270800 | AT3G50330.1 | 62.105 | 95 | 32 | 1 | 296 | 390 | 92 | 182 | 1.27e-25 | 104 |
| Msa1270800 | AT5G09750.1 | 65.263 | 95 | 27 | 2 | 296 | 389 | 92 | 181 | 2.03e-25 | 103 |
| Msa1270800 | AT5G67060.2 | 61.053 | 95 | 33 | 1 | 296 | 390 | 83 | 173 | 2.17e-25 | 103 |
| Msa1270800 | AT5G67060.1 | 61.053 | 95 | 33 | 1 | 296 | 390 | 95 | 185 | 2.98e-25 | 103 |
| Msa1270800 | AT5G01305.1 | 59.677 | 62 | 25 | 0 | 325 | 386 | 35 | 96 | 1.84e-19 | 85.9 |
| Msa1270800 | AT5G43175.1 | 47.059 | 68 | 36 | 0 | 324 | 391 | 129 | 196 | 6.48e-16 | 77.0 |
| Msa1270800 | AT5G37800.1 | 52.239 | 67 | 32 | 0 | 325 | 391 | 199 | 265 | 7.81e-16 | 78.2 |
| Msa1270800 | AT1G66470.1 | 50.000 | 68 | 34 | 0 | 322 | 389 | 190 | 257 | 1.03e-15 | 77.8 |
| Msa1270800 | AT4G33880.1 | 51.562 | 64 | 31 | 0 | 328 | 391 | 267 | 330 | 1.28e-15 | 78.2 |
| Msa1270800 | AT2G14760.1 | 51.562 | 64 | 31 | 0 | 328 | 391 | 238 | 301 | 1.67e-15 | 77.8 |
| Msa1270800 | AT4G30980.1 | 49.367 | 79 | 37 | 2 | 323 | 398 | 125 | 203 | 4.95e-15 | 75.9 |
| Msa1270800 | AT2G24260.2 | 57.143 | 56 | 24 | 0 | 334 | 389 | 42 | 97 | 9.00e-15 | 74.3 |
| Msa1270800 | AT4G30980.2 | 49.367 | 79 | 37 | 2 | 323 | 398 | 173 | 251 | 1.01e-14 | 75.5 |
| Msa1270800 | AT1G27740.1 | 47.059 | 68 | 36 | 0 | 324 | 391 | 164 | 231 | 1.53e-14 | 73.6 |
| Msa1270800 | AT2G24260.1 | 57.143 | 56 | 24 | 0 | 334 | 389 | 145 | 200 | 2.42e-14 | 74.3 |
| Msa1270800 | AT5G58010.1 | 41.111 | 90 | 44 | 2 | 321 | 401 | 92 | 181 | 7.11e-14 | 72.4 |
| Msa1270800 | AT2G14760.3 | 42.857 | 77 | 31 | 1 | 328 | 391 | 238 | 314 | 2.25e-12 | 68.2 |
Find 65 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCTTGGTTTCTTGCATTT+TGG | 0.110710 | 8_3:-4143326 | None:intergenic |
| TTCATTTGTGCTATTGCTTC+TGG | 0.163364 | 8_3:-4143437 | None:intergenic |
| AAAGAATAAGTGAAAGAATT+AGG | 0.176959 | 8_3:+4143600 | Msa1270800:CDS |
| GCATTTAGACCAGTGAATTT+TGG | 0.189702 | 8_3:+4143482 | Msa1270800:CDS |
| CAACATATTGATGATGAATT+TGG | 0.233252 | 8_3:-4143389 | None:intergenic |
| TATCCATGGATGGTCTAAAT+TGG | 0.250098 | 8_3:+4142556 | None:intergenic |
| TGAAATGATTGAGGTATTAA+AGG | 0.270091 | 8_3:-4142810 | None:intergenic |
| GTTAAGGCACTTGAAAGTTT+AGG | 0.322532 | 8_3:+4143716 | Msa1270800:CDS |
| AAGAATAAGTGAAAGAATTA+GGG | 0.351830 | 8_3:+4143601 | Msa1270800:CDS |
| GAGATGCATAAAGTTCAAAT+TGG | 0.386265 | 8_3:+4142678 | Msa1270800:CDS |
| TGTACCTGGTGGAAGCAAAA+TGG | 0.387485 | 8_3:+4143637 | Msa1270800:CDS |
| ATCTTTACATTCTTCCTCTT+AGG | 0.399260 | 8_3:-4143536 | None:intergenic |
| TGTCTTGCAGCAACAGTTTG+TGG | 0.403895 | 8_3:-4143569 | None:intergenic |
| CAAGGTCCCTTATCACATCT+TGG | 0.412458 | 8_3:-4143341 | None:intergenic |
| CAAGAAACCAAGATGTGATA+AGG | 0.413232 | 8_3:+4143334 | Msa1270800:CDS |
| CTTCTGATTGAAGGTGTGTC+TGG | 0.415917 | 8_3:-4143122 | None:intergenic |
| TGGTGGGCCATGTTGAAATC+TGG | 0.417693 | 8_3:-4142867 | None:intergenic |
| AAAGAGAAAGCAATACTAGT+TGG | 0.418809 | 8_3:-4143767 | None:intergenic |
| GAATGAGGATTATGATTACT+AGG | 0.423589 | 8_3:-4143818 | None:intergenic |
| CATAATTCTTCACCTGTTGA+AGG | 0.428854 | 8_3:+4143275 | Msa1270800:CDS |
| TGGTTGTTGAAAATTGATAT+TGG | 0.428990 | 8_3:-4143369 | None:intergenic |
| GACACTTCTGTTGAAAATGA+TGG | 0.438340 | 8_3:+4142957 | Msa1270800:CDS |
| CTGTTGCTGCAAGACATAGA+AGG | 0.446002 | 8_3:+4143576 | Msa1270800:CDS |
| ATCATTTGCATGGGAAAAGA+AGG | 0.446256 | 8_3:-4143794 | None:intergenic |
| ATCCATGGATGGTCTAAATT+GGG | 0.452946 | 8_3:+4142557 | None:intergenic |
| TAAAGGTTCTTCTCTCCAGC+TGG | 0.468965 | 8_3:-4142793 | None:intergenic |
| AGTCTAAAACCACCTTCAAC+AGG | 0.475064 | 8_3:-4143287 | None:intergenic |
| AAATCTGGCATAATGTTGTA+AGG | 0.495981 | 8_3:-4142852 | None:intergenic |
| GCACTAACACTTCTGATTGA+AGG | 0.496925 | 8_3:-4143131 | None:intergenic |
| TAATCATAATCCTCATTCAC+AGG | 0.499166 | 8_3:+4143823 | Msa1270800:CDS |
| GTTAGTGCTACAGATGGTAC+TGG | 0.504685 | 8_3:+4143146 | Msa1270800:CDS |
| AGGTAACAAAGTTAATGCTA+TGG | 0.507469 | 8_3:+4143736 | Msa1270800:CDS |
| TGTTGTGAAAGATTTGTGTT+TGG | 0.510255 | 8_3:-4142732 | None:intergenic |
| AAGAAACCAAGATGTGATAA+GGG | 0.511131 | 8_3:+4143335 | Msa1270800:CDS |
| GTAAGGTCTACTGTCTGAAA+AGG | 0.516969 | 8_3:-4142835 | None:intergenic |
| AGAAGCAATAGCACAAATGA+AGG | 0.517584 | 8_3:+4143439 | Msa1270800:CDS |
| TGTTGAGTACTCCACAAGAT+TGG | 0.521264 | 8_3:-4142606 | None:intergenic |
| AATCAAAAGCTGGATCCAGC+TGG | 0.531706 | 8_3:+4142778 | Msa1270800:CDS |
| TCATGTCAACCCTGTGAATG+AGG | 0.536052 | 8_3:-4143833 | None:intergenic |
| ATTACTAGGGATCATTTGCA+TGG | 0.537756 | 8_3:-4143804 | None:intergenic |
| ATGAAAGTGAAATCAAAAGC+TGG | 0.539625 | 8_3:+4142768 | Msa1270800:CDS |
| ATCCCAATTTAGACCATCCA+TGG | 0.539878 | 8_3:-4142559 | None:intergenic |
| GTTTCATCAAATTCATTGAG+TGG | 0.542529 | 8_3:-4143188 | None:intergenic |
| TCATCCATTCCAAAATTCAC+TGG | 0.545940 | 8_3:-4143491 | None:intergenic |
| GAAAAGGACTGAAATGATTG+AGG | 0.553231 | 8_3:-4142819 | None:intergenic |
| AGTAACACAGCAACTTCCTC+AGG | 0.560472 | 8_3:+4143032 | Msa1270800:CDS |
| AAGAGAACACACCAATCTTG+TGG | 0.562304 | 8_3:+4142595 | Msa1270800:CDS |
| AACAATCTCTCAGAGTTCCT+CGG | 0.571223 | 8_3:+4143208 | Msa1270800:CDS |
| AGTACTCAACACTTTGAAGA+TGG | 0.582208 | 8_3:+4142618 | Msa1270800:CDS |
| AATTCTTCACCTGTTGAAGG+TGG | 0.582439 | 8_3:+4143278 | Msa1270800:CDS |
| TGGATTGATGTATTGATCCG+AGG | 0.584470 | 8_3:-4143225 | None:intergenic |
| AATGAGGATTATGATTACTA+GGG | 0.585755 | 8_3:-4143817 | None:intergenic |
| TGTTGCTGCAAGACATAGAA+GGG | 0.587506 | 8_3:+4143577 | Msa1270800:CDS |
| CACTGCTTCAATGCTTGATG+AGG | 0.590511 | 8_3:+4143661 | Msa1270800:CDS |
| AAATTGATATTGGTTGAACA+AGG | 0.601710 | 8_3:-4143359 | None:intergenic |
| TCATTTGCATGGGAAAAGAA+GGG | 0.621230 | 8_3:-4143793 | None:intergenic |
| ATTAGAGTCATATCCATGGA+TGG | 0.621281 | 8_3:+4142546 | None:intergenic |
| TTACTAGGGATCATTTGCAT+GGG | 0.622466 | 8_3:-4143803 | None:intergenic |
| ATGGATGGTCTAAATTGGGA+TGG | 0.624739 | 8_3:+4142561 | Msa1270800:CDS |
| AGAAGTGTTAGTGCTACAGA+TGG | 0.646789 | 8_3:+4143140 | Msa1270800:CDS |
| AATCATAATCCTCATTCACA+GGG | 0.648589 | 8_3:+4143824 | Msa1270800:CDS |
| CATTATGCCAGATTTCAACA+TGG | 0.655208 | 8_3:+4142860 | Msa1270800:CDS |
| ACGAAGCACTGACACAAACA+CGG | 0.661099 | 8_3:+4143090 | Msa1270800:CDS |
| ATTACTATCAGTTTCACCTG+AGG | 0.681052 | 8_3:-4143048 | None:intergenic |
| TTGCAAAAGATTGTACCTGG+TGG | 0.687101 | 8_3:+4143626 | Msa1270800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAATAAGTGAAAGAATT+AGG | + | chr8_3:4143600-4143619 | Msa1270800:CDS | 20.0% |
| !! | AAGAATAAGTGAAAGAATTA+GGG | + | chr8_3:4143601-4143620 | Msa1270800:CDS | 20.0% |
| !!! | CAAATTATCTCAAGTTTTTA+AGG | + | chr8_3:4143687-4143706 | Msa1270800:CDS | 20.0% |
| !! | AAAGAATAAGTGAAAGAATT+AGG | + | chr8_3:4143600-4143619 | Msa1270800:CDS | 20.0% |
| !! | AAGAATAAGTGAAAGAATTA+GGG | + | chr8_3:4143601-4143620 | Msa1270800:CDS | 20.0% |
| !!! | CAAATTATCTCAAGTTTTTA+AGG | + | chr8_3:4143687-4143706 | Msa1270800:CDS | 20.0% |
| !! | TGAAATGATTGAGGTATTAA+AGG | - | chr8_3:4142813-4142832 | None:intergenic | 25.0% |
| !!! | CTTGATTGTATTGTTTTTCT+TGG | - | chr8_3:4143248-4143267 | None:intergenic | 25.0% |
| !! | AAATTGATATTGGTTGAACA+AGG | - | chr8_3:4143362-4143381 | None:intergenic | 25.0% |
| ! | TGGTTGTTGAAAATTGATAT+TGG | - | chr8_3:4143372-4143391 | None:intergenic | 25.0% |
| !!! | CAACATATTGATGATGAATT+TGG | - | chr8_3:4143392-4143411 | None:intergenic | 25.0% |
| ! | AATGAGGATTATGATTACTA+GGG | - | chr8_3:4143820-4143839 | None:intergenic | 25.0% |
| !! | TGAAATGATTGAGGTATTAA+AGG | - | chr8_3:4142813-4142832 | None:intergenic | 25.0% |
| !!! | CTTGATTGTATTGTTTTTCT+TGG | - | chr8_3:4143248-4143267 | None:intergenic | 25.0% |
| !! | AAATTGATATTGGTTGAACA+AGG | - | chr8_3:4143362-4143381 | None:intergenic | 25.0% |
| ! | TGGTTGTTGAAAATTGATAT+TGG | - | chr8_3:4143372-4143391 | None:intergenic | 25.0% |
| !!! | CAACATATTGATGATGAATT+TGG | - | chr8_3:4143392-4143411 | None:intergenic | 25.0% |
| ! | AATGAGGATTATGATTACTA+GGG | - | chr8_3:4143820-4143839 | None:intergenic | 25.0% |
| GAGATGCATAAAGTTCAAAT+TGG | + | chr8_3:4142678-4142697 | Msa1270800:CDS | 30.0% | |
| TGTTGTGAAAGATTTGTGTT+TGG | - | chr8_3:4142735-4142754 | None:intergenic | 30.0% | |
| ATGAAAGTGAAATCAAAAGC+TGG | + | chr8_3:4142768-4142787 | Msa1270800:CDS | 30.0% | |
| AAATCTGGCATAATGTTGTA+AGG | - | chr8_3:4142855-4142874 | None:intergenic | 30.0% | |
| !! | AGTTGTTGAGTTTTTGTTGT+TGG | - | chr8_3:4142890-4142909 | None:intergenic | 30.0% |
| !! | TCTTTTGATTGTTTGCTTTC+AGG | + | chr8_3:4142918-4142937 | Msa1270800:CDS | 30.0% |
| TTTCTGACTGCAAAAACTTA+TGG | + | chr8_3:4142994-4143013 | Msa1270800:CDS | 30.0% | |
| GTTTCATCAAATTCATTGAG+TGG | - | chr8_3:4143191-4143210 | None:intergenic | 30.0% | |
| AAGAAACCAAGATGTGATAA+GGG | + | chr8_3:4143335-4143354 | Msa1270800:CDS | 30.0% | |
| TAATCGAAAAAAAGCCTAAG+AGG | + | chr8_3:4143522-4143541 | Msa1270800:CDS | 30.0% | |
| ATCTTTACATTCTTCCTCTT+AGG | - | chr8_3:4143539-4143558 | None:intergenic | 30.0% | |
| AGGTAACAAAGTTAATGCTA+TGG | + | chr8_3:4143736-4143755 | Msa1270800:CDS | 30.0% | |
| AAAGAGAAAGCAATACTAGT+TGG | - | chr8_3:4143770-4143789 | None:intergenic | 30.0% | |
| GAATGAGGATTATGATTACT+AGG | - | chr8_3:4143821-4143840 | None:intergenic | 30.0% | |
| TAATCATAATCCTCATTCAC+AGG | + | chr8_3:4143823-4143842 | Msa1270800:CDS | 30.0% | |
| AATCATAATCCTCATTCACA+GGG | + | chr8_3:4143824-4143843 | Msa1270800:CDS | 30.0% | |
| GAGATGCATAAAGTTCAAAT+TGG | + | chr8_3:4142678-4142697 | Msa1270800:CDS | 30.0% | |
| TGTTGTGAAAGATTTGTGTT+TGG | - | chr8_3:4142735-4142754 | None:intergenic | 30.0% | |
| ATGAAAGTGAAATCAAAAGC+TGG | + | chr8_3:4142768-4142787 | Msa1270800:CDS | 30.0% | |
| AAATCTGGCATAATGTTGTA+AGG | - | chr8_3:4142855-4142874 | None:intergenic | 30.0% | |
| !! | AGTTGTTGAGTTTTTGTTGT+TGG | - | chr8_3:4142890-4142909 | None:intergenic | 30.0% |
| !! | TCTTTTGATTGTTTGCTTTC+AGG | + | chr8_3:4142918-4142937 | Msa1270800:CDS | 30.0% |
| TTTCTGACTGCAAAAACTTA+TGG | + | chr8_3:4142994-4143013 | Msa1270800:CDS | 30.0% | |
| GTTTCATCAAATTCATTGAG+TGG | - | chr8_3:4143191-4143210 | None:intergenic | 30.0% | |
| AAGAAACCAAGATGTGATAA+GGG | + | chr8_3:4143335-4143354 | Msa1270800:CDS | 30.0% | |
| TAATCGAAAAAAAGCCTAAG+AGG | + | chr8_3:4143522-4143541 | Msa1270800:CDS | 30.0% | |
| ATCTTTACATTCTTCCTCTT+AGG | - | chr8_3:4143539-4143558 | None:intergenic | 30.0% | |
| AGGTAACAAAGTTAATGCTA+TGG | + | chr8_3:4143736-4143755 | Msa1270800:CDS | 30.0% | |
| AAAGAGAAAGCAATACTAGT+TGG | - | chr8_3:4143770-4143789 | None:intergenic | 30.0% | |
| GAATGAGGATTATGATTACT+AGG | - | chr8_3:4143821-4143840 | None:intergenic | 30.0% | |
| TAATCATAATCCTCATTCAC+AGG | + | chr8_3:4143823-4143842 | Msa1270800:CDS | 30.0% | |
| AATCATAATCCTCATTCACA+GGG | + | chr8_3:4143824-4143843 | Msa1270800:CDS | 30.0% | |
| ! | AGTACTCAACACTTTGAAGA+TGG | + | chr8_3:4142618-4142637 | Msa1270800:CDS | 35.0% |
| GAAAAGGACTGAAATGATTG+AGG | - | chr8_3:4142822-4142841 | None:intergenic | 35.0% | |
| CATTATGCCAGATTTCAACA+TGG | + | chr8_3:4142860-4142879 | Msa1270800:CDS | 35.0% | |
| !!! | GTTGAGTTTTTGTTGTTGGT+GGG | - | chr8_3:4142886-4142905 | None:intergenic | 35.0% |
| !!! | TGTTGAGTTTTTGTTGTTGG+TGG | - | chr8_3:4142887-4142906 | None:intergenic | 35.0% |
| GACACTTCTGTTGAAAATGA+TGG | + | chr8_3:4142957-4142976 | Msa1270800:CDS | 35.0% | |
| ATTACTATCAGTTTCACCTG+AGG | - | chr8_3:4143051-4143070 | None:intergenic | 35.0% | |
| CATAATTCTTCACCTGTTGA+AGG | + | chr8_3:4143275-4143294 | Msa1270800:CDS | 35.0% | |
| ! | CATCTTGGTTTCTTGCATTT+TGG | - | chr8_3:4143329-4143348 | None:intergenic | 35.0% |
| CAAGAAACCAAGATGTGATA+AGG | + | chr8_3:4143334-4143353 | Msa1270800:CDS | 35.0% | |
| ! | TTCATTTGTGCTATTGCTTC+TGG | - | chr8_3:4143440-4143459 | None:intergenic | 35.0% |
| AGAAGCAATAGCACAAATGA+AGG | + | chr8_3:4143439-4143458 | Msa1270800:CDS | 35.0% | |
| ! | GCATTTAGACCAGTGAATTT+TGG | + | chr8_3:4143482-4143501 | Msa1270800:CDS | 35.0% |
| !! | TAGACCAGTGAATTTTGGAA+TGG | + | chr8_3:4143487-4143506 | Msa1270800:CDS | 35.0% |
| TCATCCATTCCAAAATTCAC+TGG | - | chr8_3:4143494-4143513 | None:intergenic | 35.0% | |
| ! | GTTTTGCAAAAGATTGTACC+TGG | + | chr8_3:4143623-4143642 | Msa1270800:CDS | 35.0% |
| !!! | TCTCAAGTTTTTAAGGTCAC+AGG | + | chr8_3:4143694-4143713 | Msa1270800:CDS | 35.0% |
| !!! | GTTTTTAAGGTCACAGGTTA+AGG | + | chr8_3:4143700-4143719 | Msa1270800:CDS | 35.0% |
| ! | GTTAAGGCACTTGAAAGTTT+AGG | + | chr8_3:4143716-4143735 | Msa1270800:CDS | 35.0% |
| TCATTTGCATGGGAAAAGAA+GGG | - | chr8_3:4143796-4143815 | None:intergenic | 35.0% | |
| ATCATTTGCATGGGAAAAGA+AGG | - | chr8_3:4143797-4143816 | None:intergenic | 35.0% | |
| TTACTAGGGATCATTTGCAT+GGG | - | chr8_3:4143806-4143825 | None:intergenic | 35.0% | |
| ATTACTAGGGATCATTTGCA+TGG | - | chr8_3:4143807-4143826 | None:intergenic | 35.0% | |
| ! | AGTACTCAACACTTTGAAGA+TGG | + | chr8_3:4142618-4142637 | Msa1270800:CDS | 35.0% |
| GAAAAGGACTGAAATGATTG+AGG | - | chr8_3:4142822-4142841 | None:intergenic | 35.0% | |
| CATTATGCCAGATTTCAACA+TGG | + | chr8_3:4142860-4142879 | Msa1270800:CDS | 35.0% | |
| !!! | GTTGAGTTTTTGTTGTTGGT+GGG | - | chr8_3:4142886-4142905 | None:intergenic | 35.0% |
| !!! | TGTTGAGTTTTTGTTGTTGG+TGG | - | chr8_3:4142887-4142906 | None:intergenic | 35.0% |
| GACACTTCTGTTGAAAATGA+TGG | + | chr8_3:4142957-4142976 | Msa1270800:CDS | 35.0% | |
| ATTACTATCAGTTTCACCTG+AGG | - | chr8_3:4143051-4143070 | None:intergenic | 35.0% | |
| CATAATTCTTCACCTGTTGA+AGG | + | chr8_3:4143275-4143294 | Msa1270800:CDS | 35.0% | |
| ! | CATCTTGGTTTCTTGCATTT+TGG | - | chr8_3:4143329-4143348 | None:intergenic | 35.0% |
| CAAGAAACCAAGATGTGATA+AGG | + | chr8_3:4143334-4143353 | Msa1270800:CDS | 35.0% | |
| ! | TTCATTTGTGCTATTGCTTC+TGG | - | chr8_3:4143440-4143459 | None:intergenic | 35.0% |
| AGAAGCAATAGCACAAATGA+AGG | + | chr8_3:4143439-4143458 | Msa1270800:CDS | 35.0% | |
| ! | GCATTTAGACCAGTGAATTT+TGG | + | chr8_3:4143482-4143501 | Msa1270800:CDS | 35.0% |
| !! | TAGACCAGTGAATTTTGGAA+TGG | + | chr8_3:4143487-4143506 | Msa1270800:CDS | 35.0% |
| TCATCCATTCCAAAATTCAC+TGG | - | chr8_3:4143494-4143513 | None:intergenic | 35.0% | |
| ! | GTTTTGCAAAAGATTGTACC+TGG | + | chr8_3:4143623-4143642 | Msa1270800:CDS | 35.0% |
| !!! | TCTCAAGTTTTTAAGGTCAC+AGG | + | chr8_3:4143694-4143713 | Msa1270800:CDS | 35.0% |
| !!! | GTTTTTAAGGTCACAGGTTA+AGG | + | chr8_3:4143700-4143719 | Msa1270800:CDS | 35.0% |
| ! | GTTAAGGCACTTGAAAGTTT+AGG | + | chr8_3:4143716-4143735 | Msa1270800:CDS | 35.0% |
| TCATTTGCATGGGAAAAGAA+GGG | - | chr8_3:4143796-4143815 | None:intergenic | 35.0% | |
| ATCATTTGCATGGGAAAAGA+AGG | - | chr8_3:4143797-4143816 | None:intergenic | 35.0% | |
| TTACTAGGGATCATTTGCAT+GGG | - | chr8_3:4143806-4143825 | None:intergenic | 35.0% | |
| ATTACTAGGGATCATTTGCA+TGG | - | chr8_3:4143807-4143826 | None:intergenic | 35.0% | |
| ATGGATGGTCTAAATTGGGA+TGG | + | chr8_3:4142561-4142580 | Msa1270800:CDS | 40.0% | |
| AAGAGAACACACCAATCTTG+TGG | + | chr8_3:4142595-4142614 | Msa1270800:CDS | 40.0% | |
| TGTTGAGTACTCCACAAGAT+TGG | - | chr8_3:4142609-4142628 | None:intergenic | 40.0% | |
| GTAAGGTCTACTGTCTGAAA+AGG | - | chr8_3:4142838-4142857 | None:intergenic | 40.0% | |
| GCACTAACACTTCTGATTGA+AGG | - | chr8_3:4143134-4143153 | None:intergenic | 40.0% | |
| !! | AGAAGTGTTAGTGCTACAGA+TGG | + | chr8_3:4143140-4143159 | Msa1270800:CDS | 40.0% |
| AACAATCTCTCAGAGTTCCT+CGG | + | chr8_3:4143208-4143227 | Msa1270800:CDS | 40.0% | |
| ! | TGGATTGATGTATTGATCCG+AGG | - | chr8_3:4143228-4143247 | None:intergenic | 40.0% |
| AATTCTTCACCTGTTGAAGG+TGG | + | chr8_3:4143278-4143297 | Msa1270800:CDS | 40.0% | |
| ! | AGTCTAAAACCACCTTCAAC+AGG | - | chr8_3:4143290-4143309 | None:intergenic | 40.0% |
| ! | CTTGGTTTCTTGCATTTTGG+TGG | - | chr8_3:4143326-4143345 | None:intergenic | 40.0% |
| TGTTGCTGCAAGACATAGAA+GGG | + | chr8_3:4143577-4143596 | Msa1270800:CDS | 40.0% | |
| TTGCAAAAGATTGTACCTGG+TGG | + | chr8_3:4143626-4143645 | Msa1270800:CDS | 40.0% | |
| ATGGATGGTCTAAATTGGGA+TGG | + | chr8_3:4142561-4142580 | Msa1270800:CDS | 40.0% | |
| AAGAGAACACACCAATCTTG+TGG | + | chr8_3:4142595-4142614 | Msa1270800:CDS | 40.0% | |
| TGTTGAGTACTCCACAAGAT+TGG | - | chr8_3:4142609-4142628 | None:intergenic | 40.0% | |
| GTAAGGTCTACTGTCTGAAA+AGG | - | chr8_3:4142838-4142857 | None:intergenic | 40.0% | |
| GCACTAACACTTCTGATTGA+AGG | - | chr8_3:4143134-4143153 | None:intergenic | 40.0% | |
| !! | AGAAGTGTTAGTGCTACAGA+TGG | + | chr8_3:4143140-4143159 | Msa1270800:CDS | 40.0% |
| AACAATCTCTCAGAGTTCCT+CGG | + | chr8_3:4143208-4143227 | Msa1270800:CDS | 40.0% | |
| ! | TGGATTGATGTATTGATCCG+AGG | - | chr8_3:4143228-4143247 | None:intergenic | 40.0% |
| AATTCTTCACCTGTTGAAGG+TGG | + | chr8_3:4143278-4143297 | Msa1270800:CDS | 40.0% | |
| ! | AGTCTAAAACCACCTTCAAC+AGG | - | chr8_3:4143290-4143309 | None:intergenic | 40.0% |
| ! | CTTGGTTTCTTGCATTTTGG+TGG | - | chr8_3:4143326-4143345 | None:intergenic | 40.0% |
| TGTTGCTGCAAGACATAGAA+GGG | + | chr8_3:4143577-4143596 | Msa1270800:CDS | 40.0% | |
| TTGCAAAAGATTGTACCTGG+TGG | + | chr8_3:4143626-4143645 | Msa1270800:CDS | 40.0% | |
| AATCAAAAGCTGGATCCAGC+TGG | + | chr8_3:4142778-4142797 | Msa1270800:CDS | 45.0% | |
| TAAAGGTTCTTCTCTCCAGC+TGG | - | chr8_3:4142796-4142815 | None:intergenic | 45.0% | |
| AGTAACACAGCAACTTCCTC+AGG | + | chr8_3:4143032-4143051 | Msa1270800:CDS | 45.0% | |
| !! | ACGAAGCACTGACACAAACA+CGG | + | chr8_3:4143090-4143109 | Msa1270800:CDS | 45.0% |
| ! | CTTCTGATTGAAGGTGTGTC+TGG | - | chr8_3:4143125-4143144 | None:intergenic | 45.0% |
| GTTAGTGCTACAGATGGTAC+TGG | + | chr8_3:4143146-4143165 | Msa1270800:CDS | 45.0% | |
| CAAGGTCCCTTATCACATCT+TGG | - | chr8_3:4143344-4143363 | None:intergenic | 45.0% | |
| TGTCTTGCAGCAACAGTTTG+TGG | - | chr8_3:4143572-4143591 | None:intergenic | 45.0% | |
| CTGTTGCTGCAAGACATAGA+AGG | + | chr8_3:4143576-4143595 | Msa1270800:CDS | 45.0% | |
| TGTACCTGGTGGAAGCAAAA+TGG | + | chr8_3:4143637-4143656 | Msa1270800:CDS | 45.0% | |
| CACTGCTTCAATGCTTGATG+AGG | + | chr8_3:4143661-4143680 | Msa1270800:CDS | 45.0% | |
| AATCAAAAGCTGGATCCAGC+TGG | + | chr8_3:4142778-4142797 | Msa1270800:CDS | 45.0% | |
| TAAAGGTTCTTCTCTCCAGC+TGG | - | chr8_3:4142796-4142815 | None:intergenic | 45.0% | |
| AGTAACACAGCAACTTCCTC+AGG | + | chr8_3:4143032-4143051 | Msa1270800:CDS | 45.0% | |
| !! | ACGAAGCACTGACACAAACA+CGG | + | chr8_3:4143090-4143109 | Msa1270800:CDS | 45.0% |
| ! | CTTCTGATTGAAGGTGTGTC+TGG | - | chr8_3:4143125-4143144 | None:intergenic | 45.0% |
| GTTAGTGCTACAGATGGTAC+TGG | + | chr8_3:4143146-4143165 | Msa1270800:CDS | 45.0% | |
| CAAGGTCCCTTATCACATCT+TGG | - | chr8_3:4143344-4143363 | None:intergenic | 45.0% | |
| TGTCTTGCAGCAACAGTTTG+TGG | - | chr8_3:4143572-4143591 | None:intergenic | 45.0% | |
| CTGTTGCTGCAAGACATAGA+AGG | + | chr8_3:4143576-4143595 | Msa1270800:CDS | 45.0% | |
| TGTACCTGGTGGAAGCAAAA+TGG | + | chr8_3:4143637-4143656 | Msa1270800:CDS | 45.0% | |
| CACTGCTTCAATGCTTGATG+AGG | + | chr8_3:4143661-4143680 | Msa1270800:CDS | 45.0% | |
| ! | TGGTGGGCCATGTTGAAATC+TGG | - | chr8_3:4142870-4142889 | None:intergenic | 50.0% |
| ! | GTGTCCATTTTGCTTCCACC+AGG | - | chr8_3:4143644-4143663 | None:intergenic | 50.0% |
| ! | TGGTGGGCCATGTTGAAATC+TGG | - | chr8_3:4142870-4142889 | None:intergenic | 50.0% |
| ! | GTGTCCATTTTGCTTCCACC+AGG | - | chr8_3:4143644-4143663 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 4142561 | 4143850 | 4142561 | ID=Msa1270800;Name=Msa1270800 |
| chr8_3 | mRNA | 4142561 | 4143850 | 4142561 | ID=Msa1270800-mRNA-1;Parent=Msa1270800;Name=Msa1270800-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|-1|0|1|-1|1|1|0|429 |
| chr8_3 | exon | 4142561 | 4143850 | 4142561 | ID=Msa1270800-mRNA-1:exon:1383;Parent=Msa1270800-mRNA-1 |
| chr8_3 | CDS | 4142561 | 4143850 | 4142561 | ID=Msa1270800-mRNA-1:cds;Parent=Msa1270800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
