Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1273290 | XP_003626931.1 | 94.324 | 370 | 21 | 0 | 1 | 370 | 1 | 370 | 0.0 | 722 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1273290 | G7LF49 | 94.324 | 370 | 21 | 0 | 1 | 370 | 1 | 370 | 0.0 | 722 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1273290 | TR | mTERF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1273290 | MtrunA17_Chr8g0339041 | 94.324 | 370 | 21 | 0 | 1 | 370 | 1 | 370 | 0.0 | 722 |
| Msa1273290 | MtrunA17_Chr2g0296121 | 23.024 | 291 | 211 | 8 | 63 | 348 | 172 | 454 | 3.20e-13 | 70.9 |
| Msa1273290 | MtrunA17_Chr2g0296301 | 20.130 | 308 | 233 | 9 | 63 | 363 | 80 | 381 | 1.04e-12 | 68.9 |
| Msa1273290 | MtrunA17_Chr4g0043941 | 21.951 | 246 | 182 | 4 | 63 | 298 | 17 | 262 | 2.90e-12 | 67.0 |
| Msa1273290 | MtrunA17_Chr2g0295731 | 20.139 | 288 | 225 | 4 | 62 | 348 | 92 | 375 | 4.55e-12 | 66.6 |
| Msa1273290 | MtrunA17_Chr2g0296151 | 22.260 | 292 | 214 | 7 | 62 | 348 | 85 | 368 | 7.00e-12 | 66.2 |
| Msa1273290 | MtrunA17_Chr2g0296111 | 21.583 | 278 | 206 | 6 | 62 | 333 | 84 | 355 | 9.56e-12 | 65.9 |
| Msa1273290 | MtrunA17_Chr4g0067671 | 21.356 | 295 | 214 | 8 | 47 | 333 | 72 | 356 | 1.20e-11 | 65.5 |
| Msa1273290 | MtrunA17_Chr2g0286191 | 23.052 | 308 | 169 | 11 | 58 | 351 | 107 | 360 | 1.48e-11 | 65.1 |
| Msa1273290 | MtrunA17_Chr2g0295741 | 22.337 | 291 | 213 | 7 | 63 | 348 | 92 | 374 | 1.93e-11 | 65.1 |
| Msa1273290 | MtrunA17_Chr2g0296711 | 21.812 | 298 | 219 | 9 | 63 | 353 | 99 | 389 | 2.51e-11 | 64.7 |
| Msa1273290 | MtrunA17_Chr2g0295761 | 20.875 | 297 | 219 | 9 | 58 | 347 | 99 | 386 | 5.86e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1273290 | AT1G79220.1 | 48.485 | 330 | 165 | 3 | 44 | 370 | 72 | 399 | 2.83e-105 | 315 |
| Msa1273290 | AT1G61990.2 | 21.515 | 330 | 204 | 9 | 62 | 349 | 94 | 410 | 8.51e-12 | 66.6 |
| Msa1273290 | AT1G61990.1 | 21.515 | 330 | 204 | 9 | 62 | 349 | 94 | 410 | 8.51e-12 | 66.6 |
| Msa1273290 | AT1G21150.3 | 22.266 | 256 | 191 | 5 | 48 | 297 | 47 | 300 | 2.03e-11 | 65.1 |
| Msa1273290 | AT5G64950.1 | 25.090 | 279 | 183 | 7 | 87 | 348 | 107 | 376 | 2.14e-11 | 65.1 |
| Msa1273290 | AT1G21150.1 | 22.266 | 256 | 191 | 5 | 48 | 297 | 83 | 336 | 2.74e-11 | 65.1 |
| Msa1273290 | AT1G21150.2 | 22.047 | 254 | 194 | 4 | 48 | 297 | 147 | 400 | 3.97e-11 | 64.7 |
| Msa1273290 | AT1G62010.1 | 20.544 | 331 | 217 | 9 | 57 | 347 | 75 | 399 | 7.84e-11 | 63.5 |
Find 61 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTCGCTTGCTTAGTGATT+TGG | 0.257285 | 8_3:-7002826 | Msa1273290:CDS |
| ATTGACAATGTCAAAATATT+AGG | 0.269638 | 8_3:+7002345 | None:intergenic |
| CTTCGCTTGCTTAGTGATTT+GGG | 0.280618 | 8_3:-7002825 | Msa1273290:CDS |
| GGAAATTGCTGATGAGTTAA+TGG | 0.297355 | 8_3:-7002085 | Msa1273290:CDS |
| TTGCTTAGTGATTTGGGTTT+AGG | 0.299185 | 8_3:-7002819 | Msa1273290:CDS |
| AAATATGTGGTGACATTAAT+AGG | 0.301744 | 8_3:-7002462 | Msa1273290:CDS |
| ATGCTTCGATTTCTTTCAAA+TGG | 0.307456 | 8_3:-7003095 | Msa1273290:CDS |
| TAGCAGTTTCATCAAGGAAT+TGG | 0.311012 | 8_3:-7002029 | Msa1273290:CDS |
| CAAGCCTCTCGTCGAAATTA+TGG | 0.312035 | 8_3:+7002736 | None:intergenic |
| AGCAATGAAGGTACAGAATA+TGG | 0.327499 | 8_3:-7002196 | Msa1273290:CDS |
| ATATTTGAAAACAACAGATA+TGG | 0.357754 | 8_3:+7002249 | None:intergenic |
| TTTGTACAATTTCGAATCCT+TGG | 0.360192 | 8_3:+7002482 | None:intergenic |
| TTTGACATTGTCAATTGATA+AGG | 0.373162 | 8_3:-7002337 | Msa1273290:CDS |
| TGCAAAATGTTGAAGACAAA+TGG | 0.380077 | 8_3:-7002962 | Msa1273290:CDS |
| TTGCTTGGGTGAATGTAAAA+TGG | 0.391005 | 8_3:+7003057 | None:intergenic |
| TTCATTGCTAGAAGCACTCT+TGG | 0.407140 | 8_3:+7002210 | None:intergenic |
| GCGCAATGCGGATCCTTCTC+AGG | 0.407457 | 8_3:-7002859 | Msa1273290:CDS |
| TATGTCATTGTTTGAGTCAA+AGG | 0.408420 | 8_3:-7002706 | Msa1273290:CDS |
| TTGTAAAGATTATCAATTGT+AGG | 0.408436 | 8_3:-7002785 | Msa1273290:CDS |
| CATCAGCAATTTCCTTATCA+TGG | 0.411377 | 8_3:+7002094 | None:intergenic |
| GTTGCACAGTATGAAGAGTT+AGG | 0.413445 | 8_3:-7002612 | Msa1273290:CDS |
| ATGGAATATATAAGTAGGAT+TGG | 0.421574 | 8_3:-7002510 | Msa1273290:CDS |
| AGCTGGGACTTTCGTCGAAT+AGG | 0.432888 | 8_3:+7003001 | None:intergenic |
| TGTGGAAACAATTCGCGAAA+AGG | 0.448608 | 8_3:-7002430 | Msa1273290:CDS |
| CCTCAATGCTCTAAGTATTG+AGG | 0.451275 | 8_3:+7002155 | None:intergenic |
| TTCCTTTGATGATGAGAAGA+TGG | 0.456305 | 8_3:-7002529 | Msa1273290:CDS |
| CTCAATGCTCTAAGTATTGA+GGG | 0.456627 | 8_3:+7002156 | None:intergenic |
| AAGAGTTAGGTATACCGAAA+AGG | 0.464523 | 8_3:-7002599 | Msa1273290:CDS |
| GTCAAAGGAAATGCTTCATA+AGG | 0.473131 | 8_3:-7002691 | Msa1273290:CDS |
| TGCTTCGATTTCTTTCAAAT+GGG | 0.473450 | 8_3:-7003094 | Msa1273290:CDS |
| TGGAATATATAAGTAGGATT+GGG | 0.487565 | 8_3:-7002509 | Msa1273290:CDS |
| GATCCGCATTGCGCAAAGAC+GGG | 0.492040 | 8_3:+7002868 | None:intergenic |
| GGGTTGTGGTGATGACGATT+TGG | 0.493364 | 8_3:-7002910 | Msa1273290:CDS |
| ATATAAAAGTAGTTCAGAAA+GGG | 0.499107 | 8_3:+7001992 | None:intergenic |
| AGAGTTAGGTATACCGAAAA+GGG | 0.502937 | 8_3:-7002598 | Msa1273290:CDS |
| GTTTGTCAGATGCCATGATA+AGG | 0.508257 | 8_3:-7002106 | Msa1273290:CDS |
| AGGTATACCGAAAAGGGACT+TGG | 0.508376 | 8_3:-7002592 | Msa1273290:CDS |
| TATTTGAAAACAACAGATAT+GGG | 0.512551 | 8_3:+7002250 | None:intergenic |
| AATATAAAAGTAGTTCAGAA+AGG | 0.519070 | 8_3:+7001991 | None:intergenic |
| GGATCCGCATTGCGCAAAGA+CGG | 0.525836 | 8_3:+7002867 | None:intergenic |
| AAGAGTGCTTCTAGCAATGA+AGG | 0.527541 | 8_3:-7002208 | Msa1273290:CDS |
| CAATGAAGGGTTTCTTGCAA+TGG | 0.534493 | 8_3:+7002668 | None:intergenic |
| AGAAGATGGAATATATAAGT+AGG | 0.535407 | 8_3:-7002515 | Msa1273290:CDS |
| AGAGATTAGCAGTTTCATCA+AGG | 0.536690 | 8_3:-7002035 | Msa1273290:CDS |
| TTCGAAATTGTACAAATATG+TGG | 0.547821 | 8_3:-7002475 | Msa1273290:CDS |
| AAGTAGGATTGGGCTTTCCA+AGG | 0.560292 | 8_3:-7002499 | Msa1273290:CDS |
| TGTCAATTGATAAGGTTCAA+AGG | 0.565097 | 8_3:-7002329 | Msa1273290:CDS |
| TTCCATCTTCTCATCATCAA+AGG | 0.572098 | 8_3:+7002527 | None:intergenic |
| TCAAGGAATTGGACTACTAG+AGG | 0.573509 | 8_3:-7002018 | Msa1273290:CDS |
| CATTGAGGATGTCCGAGGAG+AGG | 0.582695 | 8_3:-7002140 | Msa1273290:CDS |
| ACTTTCGTCGAATAGGTGGC+AGG | 0.582772 | 8_3:+7003008 | None:intergenic |
| ATTAATAGGCATCTCTCGTG+TGG | 0.591058 | 8_3:-7002448 | Msa1273290:CDS |
| GAAGTTCTTGAAATAACAGT+CGG | 0.595559 | 8_3:+7002549 | None:intergenic |
| GAAAGTCCCAGCTCAAAATG+AGG | 0.604863 | 8_3:-7002991 | Msa1273290:CDS |
| CCTCAATACTTAGAGCATTG+AGG | 0.607754 | 8_3:-7002155 | Msa1273290:CDS |
| TGGGACTTTCGTCGAATAGG+TGG | 0.610226 | 8_3:+7003004 | None:intergenic |
| TTAACCATAATTTCGACGAG+AGG | 0.625796 | 8_3:-7002740 | Msa1273290:CDS |
| AGTTTCGACTGAACCTGAGA+AGG | 0.646506 | 8_3:+7002846 | None:intergenic |
| AAATGTTGAAGACAAATGGA+AGG | 0.655802 | 8_3:-7002958 | Msa1273290:CDS |
| TAGAGCATTGAGGATGTCCG+AGG | 0.681763 | 8_3:-7002145 | Msa1273290:CDS |
| TTGCCCGTCTTTGCGCAATG+CGG | 0.689638 | 8_3:-7002871 | Msa1273290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTAATGGAATTTTATAAA+AGG | - | chr8_3:7003029-7003048 | Msa1273290:CDS | 15.0% |
| !!! | AGTTAATGGAATTTTATAAA+AGG | - | chr8_3:7003029-7003048 | Msa1273290:CDS | 15.0% |
| !!! | GAAATCTTTTATAATTGCTT+GGG | + | chr8_3:7002060-7002079 | None:intergenic | 20.0% |
| !! | TTGTAAAGATTATCAATTGT+AGG | - | chr8_3:7002315-7002334 | Msa1273290:CDS | 20.0% |
| !!! | TTTTACAAAGTATGGTTTTT+CGG | - | chr8_3:7002700-7002719 | Msa1273290:CDS | 20.0% |
| !! | ATTGACAATGTCAAAATATT+AGG | + | chr8_3:7002758-7002777 | None:intergenic | 20.0% |
| !! | TATTTGAAAACAACAGATAT+GGG | + | chr8_3:7002853-7002872 | None:intergenic | 20.0% |
| !! | ATATTTGAAAACAACAGATA+TGG | + | chr8_3:7002854-7002873 | None:intergenic | 20.0% |
| !!! | ATATCTGTTGTTTTCAAATA+TGG | - | chr8_3:7002853-7002872 | Msa1273290:CDS | 20.0% |
| !!! | ATTTTATAAAAGGACAAAAC+AGG | - | chr8_3:7003039-7003058 | Msa1273290:CDS | 20.0% |
| !!! | GAAATCTTTTATAATTGCTT+GGG | + | chr8_3:7002060-7002079 | None:intergenic | 20.0% |
| !! | TTGTAAAGATTATCAATTGT+AGG | - | chr8_3:7002315-7002334 | Msa1273290:CDS | 20.0% |
| !!! | TTTTACAAAGTATGGTTTTT+CGG | - | chr8_3:7002700-7002719 | Msa1273290:CDS | 20.0% |
| !! | ATTGACAATGTCAAAATATT+AGG | + | chr8_3:7002758-7002777 | None:intergenic | 20.0% |
| !! | TATTTGAAAACAACAGATAT+GGG | + | chr8_3:7002853-7002872 | None:intergenic | 20.0% |
| !! | ATATTTGAAAACAACAGATA+TGG | + | chr8_3:7002854-7002873 | None:intergenic | 20.0% |
| !!! | ATATCTGTTGTTTTCAAATA+TGG | - | chr8_3:7002853-7002872 | Msa1273290:CDS | 20.0% |
| !!! | ATTTTATAAAAGGACAAAAC+AGG | - | chr8_3:7003039-7003058 | Msa1273290:CDS | 20.0% |
| !! | GGAAATCTTTTATAATTGCT+TGG | + | chr8_3:7002061-7002080 | None:intergenic | 25.0% |
| !!! | TACTGAAGTTTTGAGTAAAT+GGG | - | chr8_3:7002169-7002188 | Msa1273290:CDS | 25.0% |
| ! | AGAAGATGGAATATATAAGT+AGG | - | chr8_3:7002585-7002604 | Msa1273290:CDS | 25.0% |
| ! | ATGGAATATATAAGTAGGAT+TGG | - | chr8_3:7002590-7002609 | Msa1273290:CDS | 25.0% |
| ! | TGGAATATATAAGTAGGATT+GGG | - | chr8_3:7002591-7002610 | Msa1273290:CDS | 25.0% |
| ! | TTCGAAATTGTACAAATATG+TGG | - | chr8_3:7002625-7002644 | Msa1273290:CDS | 25.0% |
| ! | AAATATGTGGTGACATTAAT+AGG | - | chr8_3:7002638-7002657 | Msa1273290:CDS | 25.0% |
| !! | GTGTTGAATTTTACAAAGTA+TGG | - | chr8_3:7002692-7002711 | Msa1273290:CDS | 25.0% |
| !! | TTTTCGGATGATGAAATATT+CGG | - | chr8_3:7002716-7002735 | Msa1273290:CDS | 25.0% |
| !! | ATGAAATATTCGGTCTTTTT+GGG | - | chr8_3:7002726-7002745 | Msa1273290:CDS | 25.0% |
| ! | TTTGACATTGTCAATTGATA+AGG | - | chr8_3:7002763-7002782 | Msa1273290:CDS | 25.0% |
| !! | GGAAATCTTTTATAATTGCT+TGG | + | chr8_3:7002061-7002080 | None:intergenic | 25.0% |
| !!! | TACTGAAGTTTTGAGTAAAT+GGG | - | chr8_3:7002169-7002188 | Msa1273290:CDS | 25.0% |
| ! | AGAAGATGGAATATATAAGT+AGG | - | chr8_3:7002585-7002604 | Msa1273290:CDS | 25.0% |
| ! | ATGGAATATATAAGTAGGAT+TGG | - | chr8_3:7002590-7002609 | Msa1273290:CDS | 25.0% |
| ! | TGGAATATATAAGTAGGATT+GGG | - | chr8_3:7002591-7002610 | Msa1273290:CDS | 25.0% |
| ! | TTCGAAATTGTACAAATATG+TGG | - | chr8_3:7002625-7002644 | Msa1273290:CDS | 25.0% |
| ! | AAATATGTGGTGACATTAAT+AGG | - | chr8_3:7002638-7002657 | Msa1273290:CDS | 25.0% |
| !! | GTGTTGAATTTTACAAAGTA+TGG | - | chr8_3:7002692-7002711 | Msa1273290:CDS | 25.0% |
| !! | TTTTCGGATGATGAAATATT+CGG | - | chr8_3:7002716-7002735 | Msa1273290:CDS | 25.0% |
| !! | ATGAAATATTCGGTCTTTTT+GGG | - | chr8_3:7002726-7002745 | Msa1273290:CDS | 25.0% |
| ! | TTTGACATTGTCAATTGATA+AGG | - | chr8_3:7002763-7002782 | Msa1273290:CDS | 25.0% |
| ATGCTTCGATTTCTTTCAAA+TGG | - | chr8_3:7002005-7002024 | Msa1273290:CDS | 30.0% | |
| TGCTTCGATTTCTTTCAAAT+GGG | - | chr8_3:7002006-7002025 | Msa1273290:CDS | 30.0% | |
| TGCAAAATGTTGAAGACAAA+TGG | - | chr8_3:7002138-7002157 | Msa1273290:CDS | 30.0% | |
| AAATGTTGAAGACAAATGGA+AGG | - | chr8_3:7002142-7002161 | Msa1273290:CDS | 30.0% | |
| !!! | CTACTGAAGTTTTGAGTAAA+TGG | - | chr8_3:7002168-7002187 | Msa1273290:CDS | 30.0% |
| !!! | ACTGAAGTTTTGAGTAAATG+GGG | - | chr8_3:7002170-7002189 | Msa1273290:CDS | 30.0% |
| TATGTCATTGTTTGAGTCAA+AGG | - | chr8_3:7002394-7002413 | Msa1273290:CDS | 30.0% | |
| ! | TATTTTCACACAGCAATGAA+GGG | + | chr8_3:7002448-7002467 | None:intergenic | 30.0% |
| ! | TTATTTTCACACAGCAATGA+AGG | + | chr8_3:7002449-7002468 | None:intergenic | 30.0% |
| GAAGTTCTTGAAATAACAGT+CGG | + | chr8_3:7002554-7002573 | None:intergenic | 30.0% | |
| TTTGTACAATTTCGAATCCT+TGG | + | chr8_3:7002621-7002640 | None:intergenic | 30.0% | |
| ! | GATGAAATATTCGGTCTTTT+TGG | - | chr8_3:7002725-7002744 | Msa1273290:CDS | 30.0% |
| TGTCAATTGATAAGGTTCAA+AGG | - | chr8_3:7002771-7002790 | Msa1273290:CDS | 30.0% | |
| ! | AGGAACATGACTTTCATTTT+AGG | - | chr8_3:7002791-7002810 | Msa1273290:CDS | 30.0% |
| !!! | ATTGAGGGTGTTTTCATATT+AGG | + | chr8_3:7002932-7002951 | None:intergenic | 30.0% |
| ATGCTTCGATTTCTTTCAAA+TGG | - | chr8_3:7002005-7002024 | Msa1273290:CDS | 30.0% | |
| TGCTTCGATTTCTTTCAAAT+GGG | - | chr8_3:7002006-7002025 | Msa1273290:CDS | 30.0% | |
| TGCAAAATGTTGAAGACAAA+TGG | - | chr8_3:7002138-7002157 | Msa1273290:CDS | 30.0% | |
| AAATGTTGAAGACAAATGGA+AGG | - | chr8_3:7002142-7002161 | Msa1273290:CDS | 30.0% | |
| !!! | CTACTGAAGTTTTGAGTAAA+TGG | - | chr8_3:7002168-7002187 | Msa1273290:CDS | 30.0% |
| !!! | ACTGAAGTTTTGAGTAAATG+GGG | - | chr8_3:7002170-7002189 | Msa1273290:CDS | 30.0% |
| TATGTCATTGTTTGAGTCAA+AGG | - | chr8_3:7002394-7002413 | Msa1273290:CDS | 30.0% | |
| ! | TATTTTCACACAGCAATGAA+GGG | + | chr8_3:7002448-7002467 | None:intergenic | 30.0% |
| ! | TTATTTTCACACAGCAATGA+AGG | + | chr8_3:7002449-7002468 | None:intergenic | 30.0% |
| GAAGTTCTTGAAATAACAGT+CGG | + | chr8_3:7002554-7002573 | None:intergenic | 30.0% | |
| TTTGTACAATTTCGAATCCT+TGG | + | chr8_3:7002621-7002640 | None:intergenic | 30.0% | |
| ! | GATGAAATATTCGGTCTTTT+TGG | - | chr8_3:7002725-7002744 | Msa1273290:CDS | 30.0% |
| TGTCAATTGATAAGGTTCAA+AGG | - | chr8_3:7002771-7002790 | Msa1273290:CDS | 30.0% | |
| ! | AGGAACATGACTTTCATTTT+AGG | - | chr8_3:7002791-7002810 | Msa1273290:CDS | 30.0% |
| !!! | ATTGAGGGTGTTTTCATATT+AGG | + | chr8_3:7002932-7002951 | None:intergenic | 30.0% |
| TTGCTTGGGTGAATGTAAAA+TGG | + | chr8_3:7002046-7002065 | None:intergenic | 35.0% | |
| ! | TTTCAACCTCATTTTGAGCT+GGG | + | chr8_3:7002118-7002137 | None:intergenic | 35.0% |
| ! | ATTTCAACCTCATTTTGAGC+TGG | + | chr8_3:7002119-7002138 | None:intergenic | 35.0% |
| ! | TTGCTTAGTGATTTGGGTTT+AGG | - | chr8_3:7002281-7002300 | Msa1273290:CDS | 35.0% |
| TTAACCATAATTTCGACGAG+AGG | - | chr8_3:7002360-7002379 | Msa1273290:CDS | 35.0% | |
| GTCAAAGGAAATGCTTCATA+AGG | - | chr8_3:7002409-7002428 | Msa1273290:CDS | 35.0% | |
| AAGAGTTAGGTATACCGAAA+AGG | - | chr8_3:7002501-7002520 | Msa1273290:CDS | 35.0% | |
| AGAGTTAGGTATACCGAAAA+GGG | - | chr8_3:7002502-7002521 | Msa1273290:CDS | 35.0% | |
| ! | ATTTGAACCAAGTCCCTTTT+CGG | + | chr8_3:7002518-7002537 | None:intergenic | 35.0% |
| !! | TTCCTTTGATGATGAGAAGA+TGG | - | chr8_3:7002571-7002590 | Msa1273290:CDS | 35.0% |
| TTCCATCTTCTCATCATCAA+AGG | + | chr8_3:7002576-7002595 | None:intergenic | 35.0% | |
| ! | AGCAATGAAGGTACAGAATA+TGG | - | chr8_3:7002904-7002923 | Msa1273290:CDS | 35.0% |
| !! | CTCAATGCTCTAAGTATTGA+GGG | + | chr8_3:7002947-7002966 | None:intergenic | 35.0% |
| CATCAGCAATTTCCTTATCA+TGG | + | chr8_3:7003009-7003028 | None:intergenic | 35.0% | |
| GGAAATTGCTGATGAGTTAA+TGG | - | chr8_3:7003015-7003034 | Msa1273290:CDS | 35.0% | |
| AGAGATTAGCAGTTTCATCA+AGG | - | chr8_3:7003065-7003084 | Msa1273290:CDS | 35.0% | |
| TAGCAGTTTCATCAAGGAAT+TGG | - | chr8_3:7003071-7003090 | Msa1273290:CDS | 35.0% | |
| TTGCTTGGGTGAATGTAAAA+TGG | + | chr8_3:7002046-7002065 | None:intergenic | 35.0% | |
| ! | TTTCAACCTCATTTTGAGCT+GGG | + | chr8_3:7002118-7002137 | None:intergenic | 35.0% |
| ! | ATTTCAACCTCATTTTGAGC+TGG | + | chr8_3:7002119-7002138 | None:intergenic | 35.0% |
| ! | TTGCTTAGTGATTTGGGTTT+AGG | - | chr8_3:7002281-7002300 | Msa1273290:CDS | 35.0% |
| TTAACCATAATTTCGACGAG+AGG | - | chr8_3:7002360-7002379 | Msa1273290:CDS | 35.0% | |
| GTCAAAGGAAATGCTTCATA+AGG | - | chr8_3:7002409-7002428 | Msa1273290:CDS | 35.0% | |
| AAGAGTTAGGTATACCGAAA+AGG | - | chr8_3:7002501-7002520 | Msa1273290:CDS | 35.0% | |
| AGAGTTAGGTATACCGAAAA+GGG | - | chr8_3:7002502-7002521 | Msa1273290:CDS | 35.0% | |
| ! | ATTTGAACCAAGTCCCTTTT+CGG | + | chr8_3:7002518-7002537 | None:intergenic | 35.0% |
| !! | TTCCTTTGATGATGAGAAGA+TGG | - | chr8_3:7002571-7002590 | Msa1273290:CDS | 35.0% |
| TTCCATCTTCTCATCATCAA+AGG | + | chr8_3:7002576-7002595 | None:intergenic | 35.0% | |
| ! | AGCAATGAAGGTACAGAATA+TGG | - | chr8_3:7002904-7002923 | Msa1273290:CDS | 35.0% |
| !! | CTCAATGCTCTAAGTATTGA+GGG | + | chr8_3:7002947-7002966 | None:intergenic | 35.0% |
| CATCAGCAATTTCCTTATCA+TGG | + | chr8_3:7003009-7003028 | None:intergenic | 35.0% | |
| GGAAATTGCTGATGAGTTAA+TGG | - | chr8_3:7003015-7003034 | Msa1273290:CDS | 35.0% | |
| AGAGATTAGCAGTTTCATCA+AGG | - | chr8_3:7003065-7003084 | Msa1273290:CDS | 35.0% | |
| TAGCAGTTTCATCAAGGAAT+TGG | - | chr8_3:7003071-7003090 | Msa1273290:CDS | 35.0% | |
| !! | GTTTTGAGTAAATGGGGTTG+TGG | - | chr8_3:7002176-7002195 | Msa1273290:CDS | 40.0% |
| ACTTCGCTTGCTTAGTGATT+TGG | - | chr8_3:7002274-7002293 | Msa1273290:CDS | 40.0% | |
| CTTCGCTTGCTTAGTGATTT+GGG | - | chr8_3:7002275-7002294 | Msa1273290:CDS | 40.0% | |
| ! | ATTGTAGGCCTCGATTTTTC+AGG | - | chr8_3:7002330-7002349 | Msa1273290:CDS | 40.0% |
| CAATGAAGGGTTTCTTGCAA+TGG | + | chr8_3:7002435-7002454 | None:intergenic | 40.0% | |
| GTTGCACAGTATGAAGAGTT+AGG | - | chr8_3:7002488-7002507 | Msa1273290:CDS | 40.0% | |
| ATTAATAGGCATCTCTCGTG+TGG | - | chr8_3:7002652-7002671 | Msa1273290:CDS | 40.0% | |
| TGTGGAAACAATTCGCGAAA+AGG | - | chr8_3:7002670-7002689 | Msa1273290:CDS | 40.0% | |
| !! | TTCATTGCTAGAAGCACTCT+TGG | + | chr8_3:7002893-7002912 | None:intergenic | 40.0% |
| !! | AAGAGTGCTTCTAGCAATGA+AGG | - | chr8_3:7002892-7002911 | Msa1273290:CDS | 40.0% |
| ! | CCTCAATGCTCTAAGTATTG+AGG | + | chr8_3:7002948-7002967 | None:intergenic | 40.0% |
| !! | CCTCAATACTTAGAGCATTG+AGG | - | chr8_3:7002945-7002964 | Msa1273290:CDS | 40.0% |
| CGTATTGAAAAACCTCTCCT+CGG | + | chr8_3:7002975-7002994 | None:intergenic | 40.0% | |
| GTTTGTCAGATGCCATGATA+AGG | - | chr8_3:7002994-7003013 | Msa1273290:CDS | 40.0% | |
| TCAAGGAATTGGACTACTAG+AGG | - | chr8_3:7003082-7003101 | Msa1273290:CDS | 40.0% | |
| !! | GTTTTGAGTAAATGGGGTTG+TGG | - | chr8_3:7002176-7002195 | Msa1273290:CDS | 40.0% |
| ACTTCGCTTGCTTAGTGATT+TGG | - | chr8_3:7002274-7002293 | Msa1273290:CDS | 40.0% | |
| CTTCGCTTGCTTAGTGATTT+GGG | - | chr8_3:7002275-7002294 | Msa1273290:CDS | 40.0% | |
| ! | ATTGTAGGCCTCGATTTTTC+AGG | - | chr8_3:7002330-7002349 | Msa1273290:CDS | 40.0% |
| CAATGAAGGGTTTCTTGCAA+TGG | + | chr8_3:7002435-7002454 | None:intergenic | 40.0% | |
| GTTGCACAGTATGAAGAGTT+AGG | - | chr8_3:7002488-7002507 | Msa1273290:CDS | 40.0% | |
| ATTAATAGGCATCTCTCGTG+TGG | - | chr8_3:7002652-7002671 | Msa1273290:CDS | 40.0% | |
| TGTGGAAACAATTCGCGAAA+AGG | - | chr8_3:7002670-7002689 | Msa1273290:CDS | 40.0% | |
| !! | TTCATTGCTAGAAGCACTCT+TGG | + | chr8_3:7002893-7002912 | None:intergenic | 40.0% |
| !! | AAGAGTGCTTCTAGCAATGA+AGG | - | chr8_3:7002892-7002911 | Msa1273290:CDS | 40.0% |
| ! | CCTCAATGCTCTAAGTATTG+AGG | + | chr8_3:7002948-7002967 | None:intergenic | 40.0% |
| !! | CCTCAATACTTAGAGCATTG+AGG | - | chr8_3:7002945-7002964 | Msa1273290:CDS | 40.0% |
| CGTATTGAAAAACCTCTCCT+CGG | + | chr8_3:7002975-7002994 | None:intergenic | 40.0% | |
| GTTTGTCAGATGCCATGATA+AGG | - | chr8_3:7002994-7003013 | Msa1273290:CDS | 40.0% | |
| TCAAGGAATTGGACTACTAG+AGG | - | chr8_3:7003082-7003101 | Msa1273290:CDS | 40.0% | |
| AGGTGGCAGGCATAAAAACT+GGG | + | chr8_3:7002082-7002101 | None:intergenic | 45.0% | |
| TAGGTGGCAGGCATAAAAAC+TGG | + | chr8_3:7002083-7002102 | None:intergenic | 45.0% | |
| GAAAGTCCCAGCTCAAAATG+AGG | - | chr8_3:7002109-7002128 | Msa1273290:CDS | 45.0% | |
| AGTTTCGACTGAACCTGAGA+AGG | + | chr8_3:7002257-7002276 | None:intergenic | 45.0% | |
| AGTCGAGTCCTGAAAAATCG+AGG | + | chr8_3:7002341-7002360 | None:intergenic | 45.0% | |
| CAAGCCTCTCGTCGAAATTA+TGG | + | chr8_3:7002367-7002386 | None:intergenic | 45.0% | |
| AGGTATACCGAAAAGGGACT+TGG | - | chr8_3:7002508-7002527 | Msa1273290:CDS | 45.0% | |
| AAGTAGGATTGGGCTTTCCA+AGG | - | chr8_3:7002601-7002620 | Msa1273290:CDS | 45.0% | |
| AGGTGGCAGGCATAAAAACT+GGG | + | chr8_3:7002082-7002101 | None:intergenic | 45.0% | |
| TAGGTGGCAGGCATAAAAAC+TGG | + | chr8_3:7002083-7002102 | None:intergenic | 45.0% | |
| GAAAGTCCCAGCTCAAAATG+AGG | - | chr8_3:7002109-7002128 | Msa1273290:CDS | 45.0% | |
| AGTTTCGACTGAACCTGAGA+AGG | + | chr8_3:7002257-7002276 | None:intergenic | 45.0% | |
| AGTCGAGTCCTGAAAAATCG+AGG | + | chr8_3:7002341-7002360 | None:intergenic | 45.0% | |
| CAAGCCTCTCGTCGAAATTA+TGG | + | chr8_3:7002367-7002386 | None:intergenic | 45.0% | |
| AGGTATACCGAAAAGGGACT+TGG | - | chr8_3:7002508-7002527 | Msa1273290:CDS | 45.0% | |
| AAGTAGGATTGGGCTTTCCA+AGG | - | chr8_3:7002601-7002620 | Msa1273290:CDS | 45.0% | |
| ACTTTCGTCGAATAGGTGGC+AGG | + | chr8_3:7002095-7002114 | None:intergenic | 50.0% | |
| TGGGACTTTCGTCGAATAGG+TGG | + | chr8_3:7002099-7002118 | None:intergenic | 50.0% | |
| AGCTGGGACTTTCGTCGAAT+AGG | + | chr8_3:7002102-7002121 | None:intergenic | 50.0% | |
| ! | GGGTTGTGGTGATGACGATT+TGG | - | chr8_3:7002190-7002209 | Msa1273290:CDS | 50.0% |
| !! | TAGAGCATTGAGGATGTCCG+AGG | - | chr8_3:7002955-7002974 | Msa1273290:CDS | 50.0% |
| ACTTTCGTCGAATAGGTGGC+AGG | + | chr8_3:7002095-7002114 | None:intergenic | 50.0% | |
| TGGGACTTTCGTCGAATAGG+TGG | + | chr8_3:7002099-7002118 | None:intergenic | 50.0% | |
| AGCTGGGACTTTCGTCGAAT+AGG | + | chr8_3:7002102-7002121 | None:intergenic | 50.0% | |
| ! | GGGTTGTGGTGATGACGATT+TGG | - | chr8_3:7002190-7002209 | Msa1273290:CDS | 50.0% |
| !! | TAGAGCATTGAGGATGTCCG+AGG | - | chr8_3:7002955-7002974 | Msa1273290:CDS | 50.0% |
| TTGCCCGTCTTTGCGCAATG+CGG | - | chr8_3:7002229-7002248 | Msa1273290:CDS | 55.0% | |
| GATCCGCATTGCGCAAAGAC+GGG | + | chr8_3:7002235-7002254 | None:intergenic | 55.0% | |
| GGATCCGCATTGCGCAAAGA+CGG | + | chr8_3:7002236-7002255 | None:intergenic | 55.0% | |
| CATTGAGGATGTCCGAGGAG+AGG | - | chr8_3:7002960-7002979 | Msa1273290:CDS | 55.0% | |
| TTGCCCGTCTTTGCGCAATG+CGG | - | chr8_3:7002229-7002248 | Msa1273290:CDS | 55.0% | |
| GATCCGCATTGCGCAAAGAC+GGG | + | chr8_3:7002235-7002254 | None:intergenic | 55.0% | |
| GGATCCGCATTGCGCAAAGA+CGG | + | chr8_3:7002236-7002255 | None:intergenic | 55.0% | |
| CATTGAGGATGTCCGAGGAG+AGG | - | chr8_3:7002960-7002979 | Msa1273290:CDS | 55.0% | |
| GCGCAATGCGGATCCTTCTC+AGG | - | chr8_3:7002241-7002260 | Msa1273290:CDS | 60.0% | |
| GCGCAATGCGGATCCTTCTC+AGG | - | chr8_3:7002241-7002260 | Msa1273290:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 7002005 | 7003117 | 7002005 | ID=Msa1273290;Name=Msa1273290 |
| chr8_3 | mRNA | 7002005 | 7003117 | 7002005 | ID=Msa1273290-mRNA-1;Parent=Msa1273290;Name=Msa1273290-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|-1|0|1|-1|1|1|0|370 |
| chr8_3 | exon | 7002005 | 7003117 | 7002005 | ID=Msa1273290-mRNA-1:exon:2762;Parent=Msa1273290-mRNA-1 |
| chr8_3 | CDS | 7002005 | 7003117 | 7002005 | ID=Msa1273290-mRNA-1:cds;Parent=Msa1273290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
