Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1273420 | MCH92394.1 | 61.290 | 93 | 35 | 1 | 40 | 132 | 13 | 104 | 3.72e-32 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1273420 | sp|Q9M8J3|FRS7_ARATH | 45.679 | 81 | 41 | 1 | 48 | 125 | 2 | 82 | 1.64e-15 | 75.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1273420 | A0A392N1M6 | 61.290 | 93 | 35 | 1 | 40 | 132 | 13 | 104 | 1.78e-32 | 120 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1273420 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1273420 | MtrunA17_Chr1g0202341 | 66.304 | 92 | 30 | 1 | 41 | 132 | 22 | 112 | 1.38e-35 | 129 |
| Msa1273420 | MtrunA17_Chr3g0077241 | 62.195 | 82 | 27 | 2 | 43 | 124 | 12 | 89 | 4.88e-30 | 105 |
| Msa1273420 | MtrunA17_Chr4g0052331 | 53.012 | 83 | 38 | 1 | 41 | 123 | 14 | 95 | 7.67e-25 | 90.9 |
| Msa1273420 | MtrunA17_Chr2g0329361 | 53.333 | 60 | 28 | 0 | 69 | 128 | 59 | 118 | 1.90e-14 | 67.8 |
| Msa1273420 | MtrunA17_Chr2g0329421 | 38.372 | 86 | 45 | 2 | 56 | 133 | 8 | 93 | 9.15e-14 | 65.1 |
| Msa1273420 | MtrunA17_Chr4g0033611 | 40.000 | 75 | 41 | 1 | 63 | 133 | 68 | 142 | 2.65e-11 | 59.3 |
| Msa1273420 | MtrunA17_Chr2g0287061 | 39.683 | 63 | 38 | 0 | 63 | 125 | 175 | 237 | 4.62e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1273420 | AT3G06250.2 | 45.679 | 81 | 41 | 1 | 48 | 125 | 2 | 82 | 1.67e-16 | 75.1 |
| Msa1273420 | AT3G06250.2 | 46.429 | 56 | 30 | 0 | 70 | 125 | 189 | 244 | 6.10e-11 | 59.3 |
| Msa1273420 | AT3G06250.1 | 45.679 | 81 | 41 | 1 | 48 | 125 | 2 | 82 | 1.67e-16 | 75.1 |
| Msa1273420 | AT3G06250.1 | 46.429 | 56 | 30 | 0 | 70 | 125 | 189 | 244 | 6.10e-11 | 59.3 |
| Msa1273420 | AT3G06250.3 | 45.679 | 81 | 41 | 1 | 48 | 125 | 2 | 82 | 1.67e-16 | 75.1 |
| Msa1273420 | AT3G06250.3 | 46.429 | 56 | 30 | 0 | 70 | 125 | 189 | 244 | 6.10e-11 | 59.3 |
| Msa1273420 | AT5G18960.2 | 45.714 | 70 | 34 | 1 | 60 | 125 | 28 | 97 | 9.40e-14 | 67.4 |
| Msa1273420 | AT5G18960.1 | 45.714 | 70 | 34 | 1 | 60 | 125 | 28 | 97 | 9.40e-14 | 67.4 |
Find 39 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGAGTTACTGCAGATTC+AGG | 0.214281 | 8_3:-7150118 | Msa1273420:CDS |
| AATGGTAGTCCGTTATTTAT+AGG | 0.222226 | 8_3:+7149174 | None:intergenic |
| TTGTTCAAAGGAAGGGTTTC+GGG | 0.231331 | 8_3:-7148992 | Msa1273420:CDS |
| CATTCCTTCAAAGGGCTCTA+AGG | 0.274189 | 8_3:+7149143 | None:intergenic |
| TCGGTTTGGGTTTGATTCTC+TGG | 0.291880 | 8_3:-7150145 | Msa1273420:CDS |
| AGAACAGACGGAATGATAAT+TGG | 0.340924 | 8_3:-7149027 | Msa1273420:CDS |
| CCTGACCGTCGATCTCGGTT+TGG | 0.345178 | 8_3:-7150159 | Msa1273420:CDS |
| ATGTCAAGAGCAGCAGTTTC+AGG | 0.356702 | 8_3:+7149201 | None:intergenic |
| CTGACCGTCGATCTCGGTTT+GGG | 0.367157 | 8_3:-7150158 | Msa1273420:CDS |
| CAGATTAAAGATGACAGATA+TGG | 0.389938 | 8_3:-7149252 | Msa1273420:CDS |
| TTTGAGTTACTGCAGATTCA+GGG | 0.417156 | 8_3:-7150117 | Msa1273420:CDS |
| TTTCACCTGACCGTCGATCT+CGG | 0.436339 | 8_3:-7150164 | Msa1273420:CDS |
| TTTGTTCAAAGGAAGGGTTT+CGG | 0.447784 | 8_3:-7148993 | Msa1273420:CDS |
| CTTAGAGCCCTTTGAAGGAA+TGG | 0.476103 | 8_3:-7149142 | Msa1273420:CDS |
| AGGCAAGGAATCACTACAAA+AGG | 0.478706 | 8_3:-7149101 | Msa1273420:CDS |
| ATTCCTTCAAAGGGCTCTAA+GGG | 0.488264 | 8_3:+7149144 | None:intergenic |
| TGTGAACTCCATTCCTTCAA+AGG | 0.507742 | 8_3:+7149134 | None:intergenic |
| CCAAACCGAGATCGACGGTC+AGG | 0.512441 | 8_3:+7150159 | None:intergenic |
| GTGAACTCCATTCCTTCAAA+GGG | 0.518109 | 8_3:+7149135 | None:intergenic |
| GTGATTCCTTGCCTCTTCGA+TGG | 0.520594 | 8_3:+7149110 | None:intergenic |
| TAAAGAGTTTCTTTGTTCAA+AGG | 0.523442 | 8_3:-7149004 | Msa1273420:CDS |
| GACATGGATCCTATAAATAA+CGG | 0.523874 | 8_3:-7149183 | Msa1273420:CDS |
| GAGTTTCTTTGTTCAAAGGA+AGG | 0.524715 | 8_3:-7149000 | Msa1273420:CDS |
| AGTTTCTTTGTTCAAAGGAA+GGG | 0.533222 | 8_3:-7148999 | Msa1273420:CDS |
| TTGAGTTACTGCAGATTCAG+GGG | 0.556536 | 8_3:-7150116 | Msa1273420:CDS |
| CGGTCAGGTGAAAAGAAGAA+AGG | 0.565691 | 8_3:+7150174 | None:intergenic |
| TGAAACTGCTGCTCTTGACA+TGG | 0.571525 | 8_3:-7149199 | Msa1273420:CDS |
| CTGAATCTGCAGTAACTCAA+AGG | 0.573608 | 8_3:+7150119 | None:intergenic |
| CTGTTCTTGATTTAGTAACA+CGG | 0.577898 | 8_3:+7149043 | None:intergenic |
| TGAGTTACTGCAGATTCAGG+GGG | 0.582037 | 8_3:-7150115 | Msa1273420:intron |
| GTTACTAAATCAAGAACAGA+CGG | 0.612323 | 8_3:-7149039 | Msa1273420:CDS |
| CAAACCCAAACCGAGATCGA+CGG | 0.623226 | 8_3:+7150154 | None:intergenic |
| TCACATCCATCGAAGAGGCA+AGG | 0.624553 | 8_3:-7149116 | Msa1273420:CDS |
| TACATCATCAGAACAAGCCA+TGG | 0.633375 | 8_3:+7149224 | None:intergenic |
| AAAAGGTACGCTAAGAACAA+AGG | 0.638535 | 8_3:-7149084 | Msa1273420:CDS |
| TCCTTCAAAGGGCTCTAAGG+GGG | 0.640867 | 8_3:+7149146 | None:intergenic |
| TTCCTTCAAAGGGCTCTAAG+GGG | 0.673359 | 8_3:+7149145 | None:intergenic |
| GGAGTTCACATCCATCGAAG+AGG | 0.673976 | 8_3:-7149121 | Msa1273420:CDS |
| TGACAGATATGGATGTACCA+TGG | 0.691872 | 8_3:-7149241 | Msa1273420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTCCATATAAAAATTT+GGG | + | chr8_3:7149537-7149556 | None:intergenic | 10.0% |
| !!! | TAATTTTCCATATAAAAATT+TGG | + | chr8_3:7149538-7149557 | None:intergenic | 10.0% |
| !!! | AATTTTCCATATAAAAATTT+GGG | + | chr8_3:7149537-7149556 | None:intergenic | 10.0% |
| !!! | TAATTTTCCATATAAAAATT+TGG | + | chr8_3:7149538-7149557 | None:intergenic | 10.0% |
| !!! | ATTTTCCATATAAAAATTTG+GGG | + | chr8_3:7149536-7149555 | None:intergenic | 15.0% |
| !!! | ATTTTCCATATAAAAATTTG+GGG | + | chr8_3:7149536-7149555 | None:intergenic | 15.0% |
| !!! | TTTTACTGTTCTTTCATTTA+TGG | - | chr8_3:7149150-7149169 | Msa1273420:CDS | 20.0% |
| !! | AAACCATTAGATATATCTAA+TGG | + | chr8_3:7149311-7149330 | None:intergenic | 20.0% |
| !!! | ATTTAAAATGCTAGAAACAA+AGG | + | chr8_3:7149856-7149875 | None:intergenic | 20.0% |
| !!! | TTTTACTGTTCTTTCATTTA+TGG | - | chr8_3:7149150-7149169 | Msa1273420:CDS | 20.0% |
| !! | AAACCATTAGATATATCTAA+TGG | + | chr8_3:7149311-7149330 | None:intergenic | 20.0% |
| !!! | ATTTAAAATGCTAGAAACAA+AGG | + | chr8_3:7149856-7149875 | None:intergenic | 20.0% |
| ! | AGTGTGTGTAAATACAAATT+AGG | + | chr8_3:7149244-7149263 | None:intergenic | 25.0% |
| ! | CATCCATTAGATATATCTAA+TGG | - | chr8_3:7149305-7149324 | Msa1273420:intron | 25.0% |
| ! | TGAGAATTGTTATCAAATAG+CGG | - | chr8_3:7149621-7149640 | Msa1273420:intron | 25.0% |
| ! | CTATGATAAAAAATAGCAAC+TGG | + | chr8_3:7149681-7149700 | None:intergenic | 25.0% |
| !! | TTTTATCATAGTAGAAGTTC+TGG | - | chr8_3:7149690-7149709 | Msa1273420:intron | 25.0% |
| !!! | AGTAGTTCATTTTTTATCGT+AGG | - | chr8_3:7149784-7149803 | Msa1273420:intron | 25.0% |
| ! | TAAAGAGTTTCTTTGTTCAA+AGG | - | chr8_3:7150148-7150167 | Msa1273420:CDS | 25.0% |
| ! | AGTGTGTGTAAATACAAATT+AGG | + | chr8_3:7149244-7149263 | None:intergenic | 25.0% |
| ! | CATCCATTAGATATATCTAA+TGG | - | chr8_3:7149305-7149324 | Msa1273420:intron | 25.0% |
| ! | TGAGAATTGTTATCAAATAG+CGG | - | chr8_3:7149621-7149640 | Msa1273420:intron | 25.0% |
| ! | CTATGATAAAAAATAGCAAC+TGG | + | chr8_3:7149681-7149700 | None:intergenic | 25.0% |
| !! | TTTTATCATAGTAGAAGTTC+TGG | - | chr8_3:7149690-7149709 | Msa1273420:intron | 25.0% |
| !!! | AGTAGTTCATTTTTTATCGT+AGG | - | chr8_3:7149784-7149803 | Msa1273420:intron | 25.0% |
| ! | TAAAGAGTTTCTTTGTTCAA+AGG | - | chr8_3:7150148-7150167 | Msa1273420:CDS | 25.0% |
| !!! | CAAACCATTTTTTAAGCTTC+TGG | + | chr8_3:7149189-7149208 | None:intergenic | 30.0% |
| TATGAAAACTAGGTTTGGAA+GGG | + | chr8_3:7149398-7149417 | None:intergenic | 30.0% | |
| ! | GATGACCCCAAATTTTTATA+TGG | - | chr8_3:7149528-7149547 | Msa1273420:intron | 30.0% |
| ! | TGCTCTTATTTATGCAATGA+CGG | - | chr8_3:7149586-7149605 | Msa1273420:intron | 30.0% |
| AATTGTTATCAAATAGCGGT+AGG | - | chr8_3:7149625-7149644 | Msa1273420:intron | 30.0% | |
| TAGGCATTATAAGTTAATCC+TGG | - | chr8_3:7149644-7149663 | Msa1273420:intron | 30.0% | |
| TCTATCATAGAAGTCATTCA+TGG | - | chr8_3:7149728-7149747 | Msa1273420:intron | 30.0% | |
| CAGATTAAAGATGACAGATA+TGG | - | chr8_3:7149900-7149919 | Msa1273420:intron | 30.0% | |
| GACATGGATCCTATAAATAA+CGG | - | chr8_3:7149969-7149988 | Msa1273420:intron | 30.0% | |
| AATGGTAGTCCGTTATTTAT+AGG | + | chr8_3:7149981-7150000 | None:intergenic | 30.0% | |
| CTGTTCTTGATTTAGTAACA+CGG | + | chr8_3:7150112-7150131 | None:intergenic | 30.0% | |
| GTTACTAAATCAAGAACAGA+CGG | - | chr8_3:7150113-7150132 | Msa1273420:intron | 30.0% | |
| AGTTTCTTTGTTCAAAGGAA+GGG | - | chr8_3:7150153-7150172 | Msa1273420:CDS | 30.0% | |
| !!! | CAAACCATTTTTTAAGCTTC+TGG | + | chr8_3:7149189-7149208 | None:intergenic | 30.0% |
| TATGAAAACTAGGTTTGGAA+GGG | + | chr8_3:7149398-7149417 | None:intergenic | 30.0% | |
| ! | GATGACCCCAAATTTTTATA+TGG | - | chr8_3:7149528-7149547 | Msa1273420:intron | 30.0% |
| ! | TGCTCTTATTTATGCAATGA+CGG | - | chr8_3:7149586-7149605 | Msa1273420:intron | 30.0% |
| AATTGTTATCAAATAGCGGT+AGG | - | chr8_3:7149625-7149644 | Msa1273420:intron | 30.0% | |
| TAGGCATTATAAGTTAATCC+TGG | - | chr8_3:7149644-7149663 | Msa1273420:intron | 30.0% | |
| TCTATCATAGAAGTCATTCA+TGG | - | chr8_3:7149728-7149747 | Msa1273420:intron | 30.0% | |
| CAGATTAAAGATGACAGATA+TGG | - | chr8_3:7149900-7149919 | Msa1273420:intron | 30.0% | |
| GACATGGATCCTATAAATAA+CGG | - | chr8_3:7149969-7149988 | Msa1273420:intron | 30.0% | |
| AATGGTAGTCCGTTATTTAT+AGG | + | chr8_3:7149981-7150000 | None:intergenic | 30.0% | |
| CTGTTCTTGATTTAGTAACA+CGG | + | chr8_3:7150112-7150131 | None:intergenic | 30.0% | |
| GTTACTAAATCAAGAACAGA+CGG | - | chr8_3:7150113-7150132 | Msa1273420:intron | 30.0% | |
| AGTTTCTTTGTTCAAAGGAA+GGG | - | chr8_3:7150153-7150172 | Msa1273420:CDS | 30.0% | |
| ! | TTTGAGTTACTGCAGATTCA+GGG | - | chr8_3:7149035-7149054 | Msa1273420:CDS | 35.0% |
| TCCACCAGAAGCTTAAAAAA+TGG | - | chr8_3:7149182-7149201 | Msa1273420:CDS | 35.0% | |
| !!! | ACCATTTTTTAAGCTTCTGG+TGG | + | chr8_3:7149186-7149205 | None:intergenic | 35.0% |
| !! | ATATTTGATTTGAAGCCACG+TGG | - | chr8_3:7149210-7149229 | Msa1273420:CDS | 35.0% |
| GGTTTGAACATTAGATTGAG+AGG | - | chr8_3:7149326-7149345 | Msa1273420:intron | 35.0% | |
| CTATGAAAACTAGGTTTGGA+AGG | + | chr8_3:7149399-7149418 | None:intergenic | 35.0% | |
| !! | TCCAAACCTAGTTTTCATAG+AGG | - | chr8_3:7149399-7149418 | Msa1273420:intron | 35.0% |
| TCTACCTTATGTAGCATGTA+GGG | + | chr8_3:7149501-7149520 | None:intergenic | 35.0% | |
| ATCTACCTTATGTAGCATGT+AGG | + | chr8_3:7149502-7149521 | None:intergenic | 35.0% | |
| TTTATCGTAGGAGTAGTTCA+TGG | - | chr8_3:7149796-7149815 | Msa1273420:intron | 35.0% | |
| ! | AAAAGGTACGCTAAGAACAA+AGG | - | chr8_3:7150068-7150087 | Msa1273420:intron | 35.0% |
| !!! | AAAGGTTTTAGCTTTCGCAT+GGG | - | chr8_3:7150086-7150105 | Msa1273420:intron | 35.0% |
| AGAACAGACGGAATGATAAT+TGG | - | chr8_3:7150125-7150144 | Msa1273420:CDS | 35.0% | |
| GAGTTTCTTTGTTCAAAGGA+AGG | - | chr8_3:7150152-7150171 | Msa1273420:CDS | 35.0% | |
| TTTGTTCAAAGGAAGGGTTT+CGG | - | chr8_3:7150159-7150178 | Msa1273420:CDS | 35.0% | |
| ! | TTTGAGTTACTGCAGATTCA+GGG | - | chr8_3:7149035-7149054 | Msa1273420:CDS | 35.0% |
| TCCACCAGAAGCTTAAAAAA+TGG | - | chr8_3:7149182-7149201 | Msa1273420:CDS | 35.0% | |
| !!! | ACCATTTTTTAAGCTTCTGG+TGG | + | chr8_3:7149186-7149205 | None:intergenic | 35.0% |
| !! | ATATTTGATTTGAAGCCACG+TGG | - | chr8_3:7149210-7149229 | Msa1273420:CDS | 35.0% |
| GGTTTGAACATTAGATTGAG+AGG | - | chr8_3:7149326-7149345 | Msa1273420:intron | 35.0% | |
| CTATGAAAACTAGGTTTGGA+AGG | + | chr8_3:7149399-7149418 | None:intergenic | 35.0% | |
| !! | TCCAAACCTAGTTTTCATAG+AGG | - | chr8_3:7149399-7149418 | Msa1273420:intron | 35.0% |
| TCTACCTTATGTAGCATGTA+GGG | + | chr8_3:7149501-7149520 | None:intergenic | 35.0% | |
| ATCTACCTTATGTAGCATGT+AGG | + | chr8_3:7149502-7149521 | None:intergenic | 35.0% | |
| TTTATCGTAGGAGTAGTTCA+TGG | - | chr8_3:7149796-7149815 | Msa1273420:intron | 35.0% | |
| ! | AAAAGGTACGCTAAGAACAA+AGG | - | chr8_3:7150068-7150087 | Msa1273420:intron | 35.0% |
| !!! | AAAGGTTTTAGCTTTCGCAT+GGG | - | chr8_3:7150086-7150105 | Msa1273420:intron | 35.0% |
| AGAACAGACGGAATGATAAT+TGG | - | chr8_3:7150125-7150144 | Msa1273420:CDS | 35.0% | |
| GAGTTTCTTTGTTCAAAGGA+AGG | - | chr8_3:7150152-7150171 | Msa1273420:CDS | 35.0% | |
| TTTGTTCAAAGGAAGGGTTT+CGG | - | chr8_3:7150159-7150178 | Msa1273420:CDS | 35.0% | |
| CTGAATCTGCAGTAACTCAA+AGG | + | chr8_3:7149036-7149055 | None:intergenic | 40.0% | |
| ! | CTTTGAGTTACTGCAGATTC+AGG | - | chr8_3:7149034-7149053 | Msa1273420:CDS | 40.0% |
| TTGAGTTACTGCAGATTCAG+GGG | - | chr8_3:7149036-7149055 | Msa1273420:CDS | 40.0% | |
| ACAATTGAAACCAGAGAAGG+AGG | + | chr8_3:7149099-7149118 | None:intergenic | 40.0% | |
| GCAACAATTGAAACCAGAGA+AGG | + | chr8_3:7149102-7149121 | None:intergenic | 40.0% | |
| AATTAGGAAACATGACCACG+TGG | + | chr8_3:7149228-7149247 | None:intergenic | 40.0% | |
| GCCTCTATGAAAACTAGGTT+TGG | + | chr8_3:7149403-7149422 | None:intergenic | 40.0% | |
| TCTCAGCCTCTATGAAAACT+AGG | + | chr8_3:7149408-7149427 | None:intergenic | 40.0% | |
| TAGTCCCTACATGCTACATA+AGG | - | chr8_3:7149494-7149513 | Msa1273420:intron | 40.0% | |
| TATGCAATGACGGCTATGAA+TGG | - | chr8_3:7149596-7149615 | Msa1273420:intron | 40.0% | |
| !! | TAGTAGAAGTTCTGGAGTAG+TGG | - | chr8_3:7149698-7149717 | Msa1273420:intron | 40.0% |
| TGACAGATATGGATGTACCA+TGG | - | chr8_3:7149911-7149930 | Msa1273420:intron | 40.0% | |
| TACATCATCAGAACAAGCCA+TGG | + | chr8_3:7149931-7149950 | None:intergenic | 40.0% | |
| ! | ATTCCTTCAAAGGGCTCTAA+GGG | + | chr8_3:7150011-7150030 | None:intergenic | 40.0% |
| GTGAACTCCATTCCTTCAAA+GGG | + | chr8_3:7150020-7150039 | None:intergenic | 40.0% | |
| TGTGAACTCCATTCCTTCAA+AGG | + | chr8_3:7150021-7150040 | None:intergenic | 40.0% | |
| AGGCAAGGAATCACTACAAA+AGG | - | chr8_3:7150051-7150070 | Msa1273420:intron | 40.0% | |
| !!! | CAAAGGTTTTAGCTTTCGCA+TGG | - | chr8_3:7150085-7150104 | Msa1273420:intron | 40.0% |
| TTGTTCAAAGGAAGGGTTTC+GGG | - | chr8_3:7150160-7150179 | Msa1273420:CDS | 40.0% | |
| CTGAATCTGCAGTAACTCAA+AGG | + | chr8_3:7149036-7149055 | None:intergenic | 40.0% | |
| ! | CTTTGAGTTACTGCAGATTC+AGG | - | chr8_3:7149034-7149053 | Msa1273420:CDS | 40.0% |
| TTGAGTTACTGCAGATTCAG+GGG | - | chr8_3:7149036-7149055 | Msa1273420:CDS | 40.0% | |
| ACAATTGAAACCAGAGAAGG+AGG | + | chr8_3:7149099-7149118 | None:intergenic | 40.0% | |
| GCAACAATTGAAACCAGAGA+AGG | + | chr8_3:7149102-7149121 | None:intergenic | 40.0% | |
| AATTAGGAAACATGACCACG+TGG | + | chr8_3:7149228-7149247 | None:intergenic | 40.0% | |
| GCCTCTATGAAAACTAGGTT+TGG | + | chr8_3:7149403-7149422 | None:intergenic | 40.0% | |
| TCTCAGCCTCTATGAAAACT+AGG | + | chr8_3:7149408-7149427 | None:intergenic | 40.0% | |
| TAGTCCCTACATGCTACATA+AGG | - | chr8_3:7149494-7149513 | Msa1273420:intron | 40.0% | |
| TATGCAATGACGGCTATGAA+TGG | - | chr8_3:7149596-7149615 | Msa1273420:intron | 40.0% | |
| !! | TAGTAGAAGTTCTGGAGTAG+TGG | - | chr8_3:7149698-7149717 | Msa1273420:intron | 40.0% |
| TGACAGATATGGATGTACCA+TGG | - | chr8_3:7149911-7149930 | Msa1273420:intron | 40.0% | |
| TACATCATCAGAACAAGCCA+TGG | + | chr8_3:7149931-7149950 | None:intergenic | 40.0% | |
| ! | ATTCCTTCAAAGGGCTCTAA+GGG | + | chr8_3:7150011-7150030 | None:intergenic | 40.0% |
| GTGAACTCCATTCCTTCAAA+GGG | + | chr8_3:7150020-7150039 | None:intergenic | 40.0% | |
| TGTGAACTCCATTCCTTCAA+AGG | + | chr8_3:7150021-7150040 | None:intergenic | 40.0% | |
| AGGCAAGGAATCACTACAAA+AGG | - | chr8_3:7150051-7150070 | Msa1273420:intron | 40.0% | |
| !!! | CAAAGGTTTTAGCTTTCGCA+TGG | - | chr8_3:7150085-7150104 | Msa1273420:intron | 40.0% |
| TTGTTCAAAGGAAGGGTTTC+GGG | - | chr8_3:7150160-7150179 | Msa1273420:CDS | 40.0% | |
| CGGTCAGGTGAAAAGAAGAA+AGG | + | chr8_3:7148981-7149000 | None:intergenic | 45.0% | |
| !! | TCGGTTTGGGTTTGATTCTC+TGG | - | chr8_3:7149007-7149026 | Msa1273420:CDS | 45.0% |
| TGAGTTACTGCAGATTCAGG+GGG | - | chr8_3:7149037-7149056 | Msa1273420:CDS | 45.0% | |
| AGAAGGAGGATACAACGAAC+AGG | + | chr8_3:7149085-7149104 | None:intergenic | 45.0% | |
| TTCGTTGTATCCTCCTTCTC+TGG | - | chr8_3:7149086-7149105 | Msa1273420:CDS | 45.0% | |
| GAATTCAGATGGAGAGGATC+CGG | - | chr8_3:7149359-7149378 | Msa1273420:intron | 45.0% | |
| GGTTTGGAAGGGTGAAACAA+GGG | + | chr8_3:7149387-7149406 | None:intergenic | 45.0% | |
| AGGTTTGGAAGGGTGAAACA+AGG | + | chr8_3:7149388-7149407 | None:intergenic | 45.0% | |
| CAACTGGTATTCAACATGCC+AGG | + | chr8_3:7149665-7149684 | None:intergenic | 45.0% | |
| CGTAGGAGTAGTTCATGGAT+AGG | - | chr8_3:7149801-7149820 | Msa1273420:intron | 45.0% | |
| ATGTCAAGAGCAGCAGTTTC+AGG | + | chr8_3:7149954-7149973 | None:intergenic | 45.0% | |
| TGAAACTGCTGCTCTTGACA+TGG | - | chr8_3:7149953-7149972 | Msa1273420:intron | 45.0% | |
| !! | TTCCTTCAAAGGGCTCTAAG+GGG | + | chr8_3:7150010-7150029 | None:intergenic | 45.0% |
| CATTCCTTCAAAGGGCTCTA+AGG | + | chr8_3:7150012-7150031 | None:intergenic | 45.0% | |
| ! | CTTAGAGCCCTTTGAAGGAA+TGG | - | chr8_3:7150010-7150029 | Msa1273420:intron | 45.0% |
| CGGTCAGGTGAAAAGAAGAA+AGG | + | chr8_3:7148981-7149000 | None:intergenic | 45.0% | |
| !! | TCGGTTTGGGTTTGATTCTC+TGG | - | chr8_3:7149007-7149026 | Msa1273420:CDS | 45.0% |
| TGAGTTACTGCAGATTCAGG+GGG | - | chr8_3:7149037-7149056 | Msa1273420:CDS | 45.0% | |
| AGAAGGAGGATACAACGAAC+AGG | + | chr8_3:7149085-7149104 | None:intergenic | 45.0% | |
| TTCGTTGTATCCTCCTTCTC+TGG | - | chr8_3:7149086-7149105 | Msa1273420:CDS | 45.0% | |
| GAATTCAGATGGAGAGGATC+CGG | - | chr8_3:7149359-7149378 | Msa1273420:intron | 45.0% | |
| GGTTTGGAAGGGTGAAACAA+GGG | + | chr8_3:7149387-7149406 | None:intergenic | 45.0% | |
| AGGTTTGGAAGGGTGAAACA+AGG | + | chr8_3:7149388-7149407 | None:intergenic | 45.0% | |
| CAACTGGTATTCAACATGCC+AGG | + | chr8_3:7149665-7149684 | None:intergenic | 45.0% | |
| CGTAGGAGTAGTTCATGGAT+AGG | - | chr8_3:7149801-7149820 | Msa1273420:intron | 45.0% | |
| ATGTCAAGAGCAGCAGTTTC+AGG | + | chr8_3:7149954-7149973 | None:intergenic | 45.0% | |
| TGAAACTGCTGCTCTTGACA+TGG | - | chr8_3:7149953-7149972 | Msa1273420:intron | 45.0% | |
| !! | TTCCTTCAAAGGGCTCTAAG+GGG | + | chr8_3:7150010-7150029 | None:intergenic | 45.0% |
| CATTCCTTCAAAGGGCTCTA+AGG | + | chr8_3:7150012-7150031 | None:intergenic | 45.0% | |
| ! | CTTAGAGCCCTTTGAAGGAA+TGG | - | chr8_3:7150010-7150029 | Msa1273420:intron | 45.0% |
| TTTCACCTGACCGTCGATCT+CGG | - | chr8_3:7148988-7149007 | Msa1273420:CDS | 50.0% | |
| CAAACCCAAACCGAGATCGA+CGG | + | chr8_3:7149001-7149020 | None:intergenic | 50.0% | |
| TTAGATTGAGAGGCTGCTGC+AGG | - | chr8_3:7149336-7149355 | Msa1273420:intron | 50.0% | |
| TAGATTGAGAGGCTGCTGCA+GGG | - | chr8_3:7149337-7149356 | Msa1273420:intron | 50.0% | |
| TGCAGGGAATTCAGATGGAG+AGG | - | chr8_3:7149353-7149372 | Msa1273420:intron | 50.0% | |
| GAAGGGTGAAACAAGGGATC+CGG | + | chr8_3:7149381-7149400 | None:intergenic | 50.0% | |
| !! | ATGTAGGGACTAGCCTTGGA+GGG | + | chr8_3:7149486-7149505 | None:intergenic | 50.0% |
| !! | TAGCATGTAGGGACTAGCCT+TGG | + | chr8_3:7149490-7149509 | None:intergenic | 50.0% |
| !! | TCCTTCAAAGGGCTCTAAGG+GGG | + | chr8_3:7150009-7150028 | None:intergenic | 50.0% |
| GGAGTTCACATCCATCGAAG+AGG | - | chr8_3:7150031-7150050 | Msa1273420:intron | 50.0% | |
| TCACATCCATCGAAGAGGCA+AGG | - | chr8_3:7150036-7150055 | Msa1273420:intron | 50.0% | |
| GTGATTCCTTGCCTCTTCGA+TGG | + | chr8_3:7150045-7150064 | None:intergenic | 50.0% | |
| TTTCACCTGACCGTCGATCT+CGG | - | chr8_3:7148988-7149007 | Msa1273420:CDS | 50.0% | |
| CAAACCCAAACCGAGATCGA+CGG | + | chr8_3:7149001-7149020 | None:intergenic | 50.0% | |
| TTAGATTGAGAGGCTGCTGC+AGG | - | chr8_3:7149336-7149355 | Msa1273420:intron | 50.0% | |
| TAGATTGAGAGGCTGCTGCA+GGG | - | chr8_3:7149337-7149356 | Msa1273420:intron | 50.0% | |
| TGCAGGGAATTCAGATGGAG+AGG | - | chr8_3:7149353-7149372 | Msa1273420:intron | 50.0% | |
| GAAGGGTGAAACAAGGGATC+CGG | + | chr8_3:7149381-7149400 | None:intergenic | 50.0% | |
| !! | ATGTAGGGACTAGCCTTGGA+GGG | + | chr8_3:7149486-7149505 | None:intergenic | 50.0% |
| !! | TAGCATGTAGGGACTAGCCT+TGG | + | chr8_3:7149490-7149509 | None:intergenic | 50.0% |
| !! | TCCTTCAAAGGGCTCTAAGG+GGG | + | chr8_3:7150009-7150028 | None:intergenic | 50.0% |
| GGAGTTCACATCCATCGAAG+AGG | - | chr8_3:7150031-7150050 | Msa1273420:intron | 50.0% | |
| TCACATCCATCGAAGAGGCA+AGG | - | chr8_3:7150036-7150055 | Msa1273420:intron | 50.0% | |
| GTGATTCCTTGCCTCTTCGA+TGG | + | chr8_3:7150045-7150064 | None:intergenic | 50.0% | |
| CTGACCGTCGATCTCGGTTT+GGG | - | chr8_3:7148994-7149013 | Msa1273420:CDS | 55.0% | |
| ! | ACTGCAGATTCAGGGGGTGT+TGG | - | chr8_3:7149043-7149062 | Msa1273420:CDS | 55.0% |
| GCTGCTGCAGGGAATTCAGA+TGG | - | chr8_3:7149348-7149367 | Msa1273420:intron | 55.0% | |
| !! | TGTAGGGACTAGCCTTGGAG+GGG | + | chr8_3:7149485-7149504 | None:intergenic | 55.0% |
| !! | CATGTAGGGACTAGCCTTGG+AGG | + | chr8_3:7149487-7149506 | None:intergenic | 55.0% |
| !! | GGCTCTAAGGGGGACTCTAA+TGG | + | chr8_3:7149999-7150018 | None:intergenic | 55.0% |
| TCCCCCTTAGAGCCCTTTGA+AGG | - | chr8_3:7150005-7150024 | Msa1273420:intron | 55.0% | |
| CTGACCGTCGATCTCGGTTT+GGG | - | chr8_3:7148994-7149013 | Msa1273420:CDS | 55.0% | |
| ! | ACTGCAGATTCAGGGGGTGT+TGG | - | chr8_3:7149043-7149062 | Msa1273420:CDS | 55.0% |
| GCTGCTGCAGGGAATTCAGA+TGG | - | chr8_3:7149348-7149367 | Msa1273420:intron | 55.0% | |
| !! | TGTAGGGACTAGCCTTGGAG+GGG | + | chr8_3:7149485-7149504 | None:intergenic | 55.0% |
| !! | CATGTAGGGACTAGCCTTGG+AGG | + | chr8_3:7149487-7149506 | None:intergenic | 55.0% |
| !! | GGCTCTAAGGGGGACTCTAA+TGG | + | chr8_3:7149999-7150018 | None:intergenic | 55.0% |
| TCCCCCTTAGAGCCCTTTGA+AGG | - | chr8_3:7150005-7150024 | Msa1273420:intron | 55.0% | |
| CCAAACCGAGATCGACGGTC+AGG | + | chr8_3:7148996-7149015 | None:intergenic | 60.0% | |
| CCTGACCGTCGATCTCGGTT+TGG | - | chr8_3:7148993-7149012 | Msa1273420:CDS | 60.0% | |
| !! | GTAGGGACTAGCCTTGGAGG+GGG | + | chr8_3:7149484-7149503 | None:intergenic | 60.0% |
| CCAAACCGAGATCGACGGTC+AGG | + | chr8_3:7148996-7149015 | None:intergenic | 60.0% | |
| CCTGACCGTCGATCTCGGTT+TGG | - | chr8_3:7148993-7149012 | Msa1273420:CDS | 60.0% | |
| !! | GTAGGGACTAGCCTTGGAGG+GGG | + | chr8_3:7149484-7149503 | None:intergenic | 60.0% |
| ! | CTTGGAGGGGGTGGTGCTGG+AGG | + | chr8_3:7149472-7149491 | None:intergenic | 70.0% |
| CTCCAGCACCACCCCCTCCA+AGG | - | chr8_3:7149470-7149489 | Msa1273420:intron | 70.0% | |
| AGCCTTGGAGGGGGTGGTGC+TGG | + | chr8_3:7149475-7149494 | None:intergenic | 70.0% | |
| !! | GGGACTAGCCTTGGAGGGGG+TGG | + | chr8_3:7149481-7149500 | None:intergenic | 70.0% |
| ! | CTTGGAGGGGGTGGTGCTGG+AGG | + | chr8_3:7149472-7149491 | None:intergenic | 70.0% |
| CTCCAGCACCACCCCCTCCA+AGG | - | chr8_3:7149470-7149489 | Msa1273420:intron | 70.0% | |
| AGCCTTGGAGGGGGTGGTGC+TGG | + | chr8_3:7149475-7149494 | None:intergenic | 70.0% | |
| !! | GGGACTAGCCTTGGAGGGGG+TGG | + | chr8_3:7149481-7149500 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 7148963 | 7150211 | 7148963 | ID=Msa1273420;Name=Msa1273420 |
| chr8_3 | mRNA | 7148963 | 7150211 | 7148963 | ID=Msa1273420-mRNA-1;Parent=Msa1273420;Name=Msa1273420-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0|0.5|1|1|2|0|134 |
| chr8_3 | exon | 7150116 | 7150211 | 7150116 | ID=Msa1273420-mRNA-1:exon:2799;Parent=Msa1273420-mRNA-1 |
| chr8_3 | exon | 7148963 | 7149271 | 7148963 | ID=Msa1273420-mRNA-1:exon:2798;Parent=Msa1273420-mRNA-1 |
| chr8_3 | CDS | 7150116 | 7150211 | 7150116 | ID=Msa1273420-mRNA-1:cds;Parent=Msa1273420-mRNA-1 |
| chr8_3 | CDS | 7148963 | 7149271 | 7148963 | ID=Msa1273420-mRNA-1:cds;Parent=Msa1273420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
