AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1274640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1274640 MtrunA17_Chr8g0340951 88.235 68 8 0 2 69 22 89 2.60e-38 125
Msa1274640 MtrunA17_Chr8g0340881 91.176 68 6 0 2 69 550 617 3.23e-38 133
Msa1274640 MtrunA17_Chr8g0340931 91.176 68 6 0 2 69 546 613 5.05e-38 132
Msa1274640 MtrunA17_Chr8g0341251 88.235 68 8 0 2 69 28 95 8.45e-38 127
Msa1274640 MtrunA17_Chr8g0340971 86.765 68 9 0 2 69 69 136 1.21e-37 125
Msa1274640 MtrunA17_Chr8g0341151 92.647 68 5 0 2 69 539 606 1.41e-37 131
Msa1274640 MtrunA17_Chr8g0340891 91.176 68 6 0 2 69 544 611 1.42e-37 131
Msa1274640 MtrunA17_Chr8g0340911 86.765 68 9 0 2 69 546 613 7.27e-35 124
Msa1274640 MtrunA17_Chr8g0341061 83.582 67 11 0 3 69 594 660 7.55e-34 120
Msa1274640 MtrunA17_Chr8g0341011 80.597 67 13 0 3 69 550 616 2.31e-33 119
Msa1274640 MtrunA17_Chr8g0341221 78.261 69 15 0 1 69 16 84 8.99e-33 111
Msa1274640 MtrunA17_Chr8g0340871 90.000 60 6 0 10 69 563 622 1.34e-32 117
Msa1274640 MtrunA17_Chr8g0341101 77.941 68 15 0 2 69 596 663 1.96e-32 117
Msa1274640 MtrunA17_Chr8g0341111 80.882 68 13 0 2 69 459 526 8.80e-32 115
Msa1274640 MtrunA17_Chr8g0341131 84.375 64 10 0 6 69 1 64 1.82e-31 107
Msa1274640 MtrunA17_Chr8g0341081 80.303 66 13 0 4 69 29 94 7.71e-31 109
Msa1274640 MtrunA17_Chr8g0358831 79.104 67 14 0 2 68 507 573 1.07e-29 109
Msa1274640 MtrunA17_Chr8g0347661 85.000 60 9 0 10 69 559 618 3.47e-28 105
Msa1274640 MtrunA17_Chr8g0341171 71.154 52 15 0 2 53 65 116 9.02e-20 77.0
Msa1274640 MtrunA17_Chr6g0487571 50.725 69 34 0 1 69 549 617 7.00e-19 78.6
Msa1274640 MtrunA17_Chr5g0423891 54.098 61 28 0 8 68 148 208 4.23e-18 76.3
Msa1274640 MtrunA17_Chr5g0423861 53.333 60 28 0 8 67 13 72 1.61e-17 71.6
Msa1274640 MtrunA17_Chr2g0330631 53.226 62 29 0 8 69 72 133 1.40e-16 70.9
Msa1274640 MtrunA17_Chr2g0330591 54.839 62 28 0 8 69 559 620 3.29e-16 70.9
Msa1274640 MtrunA17_Chr8g0341361 50.000 62 30 1 8 69 174 234 6.76e-16 70.1
Msa1274640 MtrunA17_Chr5g0420161 57.377 61 22 2 12 68 262 322 2.86e-15 68.2
Msa1274640 MtrunA17_Chr5g0420181 56.452 62 23 2 12 69 486 547 5.89e-15 67.4
Msa1274640 MtrunA17_Chr8g0361431 56.897 58 23 1 13 68 473 530 2.89e-14 65.5
Msa1274640 MtrunA17_Chr2g0318301 54.237 59 25 1 13 69 490 548 3.32e-14 65.1
Msa1274640 MtrunA17_Chr8g0352381 52.542 59 26 1 13 69 519 577 3.84e-14 65.1
Msa1274640 MtrunA17_Chr2g0333091 54.386 57 25 1 12 68 481 536 4.40e-14 64.7
Msa1274640 MtrunA17_Chr4g0030311 49.153 59 30 0 11 69 83 141 1.17e-13 63.5
Msa1274640 MtrunA17_Chr3g0084691 50.847 59 27 1 13 69 516 574 2.12e-13 62.8
Msa1274640 MtrunA17_Chr3g0084431 50.847 59 27 1 13 69 483 541 2.92e-13 62.4
Msa1274640 MtrunA17_Chr7g0270121 52.632 57 25 1 15 69 370 426 3.31e-13 62.4
Msa1274640 MtrunA17_Chr1g0153851 50.877 57 28 0 12 68 38 94 3.72e-13 62.0
Msa1274640 MtrunA17_Chr3g0084421 50.847 59 27 1 13 69 451 509 4.67e-13 62.0
Msa1274640 MtrunA17_Chr7g0221711 49.180 61 29 1 11 69 608 668 4.78e-13 62.0
Msa1274640 MtrunA17_Chr3g0084491 49.153 59 28 1 13 69 495 553 5.05e-13 62.0
Msa1274640 MtrunA17_Chr8g0376131 52.239 67 29 2 6 69 32 98 5.91e-13 61.6
Msa1274640 MtrunA17_Chr3g0091461 50.847 59 27 1 13 69 792 850 6.18e-13 61.6
Msa1274640 MtrunA17_Chr3g0084441 50.000 58 27 1 13 68 495 552 7.77e-13 61.2
Msa1274640 MtrunA17_Chr7g0245221 49.180 61 29 1 11 69 607 667 7.80e-13 61.2
Msa1274640 MtrunA17_Chr8g0340111 44.000 75 31 2 5 68 476 550 8.73e-13 61.2
Msa1274640 MtrunA17_Chr3g0093161 56.897 58 23 1 13 68 486 543 1.14e-12 60.8
Msa1274640 MtrunA17_Chr6g0468691 50.847 59 27 1 12 68 483 541 1.15e-12 60.8
Msa1274640 MtrunA17_Chr4g0042381 55.357 56 23 1 16 69 445 500 1.34e-12 60.5
Msa1274640 MtrunA17_Chr1g0181731 50.000 56 28 0 13 68 588 643 1.57e-12 60.5
Msa1274640 MtrunA17_Chr3g0084661 48.649 74 27 2 7 69 6 79 1.61e-12 60.5
Msa1274640 MtrunA17_Chr3g0098791 52.542 59 26 1 13 69 491 549 1.66e-12 60.5
Msa1274640 MtrunA17_Chr8g0361441 53.448 58 25 1 14 69 496 553 1.85e-12 60.1
Msa1274640 MtrunA17_Chr3g0084411 50.847 59 27 1 13 69 488 546 2.04e-12 60.1
Msa1274640 MtrunA17_Chr5g0428101 55.172 58 24 1 13 68 490 547 2.08e-12 60.1
Msa1274640 MtrunA17_Chr3g0114851 50.877 57 28 0 12 68 511 567 2.21e-12 60.1
Msa1274640 MtrunA17_Chr2g0278831 53.226 62 26 2 11 69 279 340 2.37e-12 60.1
Msa1274640 MtrunA17_Chr4g0042391 55.357 56 23 1 16 69 445 500 2.71e-12 59.7
Msa1274640 MtrunA17_Chr8g0340081 50.000 58 27 1 13 68 495 552 2.79e-12 59.7
Msa1274640 MtrunA17_Chr3g0084451 50.000 58 27 1 13 68 495 552 2.96e-12 59.7
Msa1274640 MtrunA17_Chr7g0221191 44.286 70 37 1 2 69 372 441 3.39e-12 59.3
Msa1274640 MtrunA17_Chr1g0202711 47.826 69 34 1 2 68 480 548 3.53e-12 59.3
Msa1274640 MtrunA17_Chr1g0149381 48.438 64 32 1 5 68 484 546 3.67e-12 59.3
Msa1274640 MtrunA17_Chr0c01g0489481 44.776 67 35 1 4 68 310 376 3.94e-12 59.3
Msa1274640 MtrunA17_Chr6g0475091 54.237 59 25 1 12 68 569 627 4.14e-12 59.3
Msa1274640 MtrunA17_Chr3g0108361 45.000 60 31 1 11 68 608 667 4.84e-12 58.9
Msa1274640 MtrunA17_Chr3g0081061 56.604 53 21 1 18 68 31 83 5.04e-12 56.6
Msa1274640 MtrunA17_Chr6g0475111 51.515 66 30 1 5 68 568 633 5.60e-12 58.9
Msa1274640 MtrunA17_Chr6g0474811 52.542 59 26 1 12 68 561 619 5.77e-12 58.9
Msa1274640 MtrunA17_Chr5g0411631 50.000 58 29 0 11 68 584 641 5.89e-12 58.9
Msa1274640 MtrunA17_Chr4g0049561 46.774 62 30 2 11 69 334 395 6.88e-12 58.5
Msa1274640 MtrunA17_Chr4g0061081 54.237 59 25 1 13 69 515 573 6.94e-12 58.5
Msa1274640 MtrunA17_Chr3g0084621 50.847 59 27 1 13 69 492 550 7.07e-12 58.5
Msa1274640 MtrunA17_Chr4g0049601 50.820 61 27 2 11 68 345 405 8.14e-12 58.5
Msa1274640 MtrunA17_Chr6g0474901 54.237 59 25 1 12 68 554 612 9.13e-12 58.2
Msa1274640 MtrunA17_Chr2g0280781 51.724 58 26 1 13 68 499 556 9.29e-12 58.2
Msa1274640 MtrunA17_Chr6g0474831 54.237 59 25 1 12 68 15 73 9.47e-12 58.2
Msa1274640 MtrunA17_Chr8g0365691 47.692 65 32 1 7 69 293 357 9.85e-12 58.2
Msa1274640 MtrunA17_Chr6g0475001 52.542 59 26 1 12 68 560 618 9.99e-12 58.2
Msa1274640 MtrunA17_Chr5g0422921 51.724 58 26 1 13 68 487 544 1.15e-11 58.2
Msa1274640 MtrunA17_Chr2g0318191 50.877 57 27 1 12 68 4 59 1.21e-11 57.0
Msa1274640 MtrunA17_Chr2g0278861 51.613 62 27 2 11 69 275 336 1.22e-11 57.8
Msa1274640 MtrunA17_Chr4g0025961 50.847 59 27 1 13 69 516 574 1.30e-11 57.8
Msa1274640 MtrunA17_Chr7g0236231 50.000 58 27 1 13 68 507 564 1.39e-11 57.8
Msa1274640 MtrunA17_Chr2g0312561 51.724 58 26 1 13 68 31 88 1.41e-11 57.8
Msa1274640 MtrunA17_Chr8g0354271 56.604 53 21 1 18 68 329 381 1.43e-11 57.8
Msa1274640 MtrunA17_Chr6g0483931 47.541 61 30 1 11 69 355 415 1.45e-11 57.8
Msa1274640 MtrunA17_Chr3g0108351 47.826 69 33 2 3 68 597 665 1.52e-11 57.8
Msa1274640 MtrunA17_Chr8g0348841 51.667 60 26 2 12 69 414 472 1.57e-11 57.8
Msa1274640 MtrunA17_Chr2g0314871 53.448 58 25 1 13 68 650 707 1.62e-11 57.4
Msa1274640 MtrunA17_Chr4g0049581 50.820 61 27 2 11 68 337 397 1.70e-11 57.4
Msa1274640 MtrunA17_Chr7g0236511 47.458 59 29 1 12 68 489 547 1.88e-11 57.4
Msa1274640 MtrunA17_Chr7g0236471 49.153 59 28 1 12 68 328 386 1.90e-11 57.4
Msa1274640 MtrunA17_Chr5g0428111 51.724 58 26 1 13 68 492 549 1.95e-11 57.4
Msa1274640 MtrunA17_Chr3g0125631 45.312 64 33 1 7 68 55 118 1.97e-11 57.4
Msa1274640 MtrunA17_Chr3g0084681 49.153 59 28 1 13 69 453 511 2.01e-11 57.4
Msa1274640 MtrunA17_Chr2g0327671 45.833 72 33 2 4 69 478 549 2.13e-11 57.4
Msa1274640 MtrunA17_Chr6g0485761 46.875 64 32 1 8 69 278 341 2.20e-11 57.0
Msa1274640 MtrunA17_Chr7g0274661 50.000 62 28 2 11 69 359 420 2.25e-11 57.0
Msa1274640 MtrunA17_Chr3g0123891 43.056 72 38 2 1 69 262 333 2.33e-11 57.0
Msa1274640 MtrunA17_Chr7g0236551 47.458 59 29 1 12 68 476 534 2.40e-11 57.0
Msa1274640 MtrunA17_Chr7g0236531 49.153 59 28 1 12 68 26 84 2.79e-11 57.0
Msa1274640 MtrunA17_Chr8g0354441 54.545 55 23 1 16 68 342 396 2.87e-11 57.0
Msa1274640 MtrunA17_Chr4g0071221 49.180 61 29 1 11 69 525 585 3.10e-11 56.6
Msa1274640 MtrunA17_Chr8g0380681 48.276 58 28 1 13 68 967 1024 3.38e-11 56.6
Msa1274640 MtrunA17_Chr8g0380681 49.153 59 28 1 13 69 298 356 5.72e-11 55.8
Msa1274640 MtrunA17_Chr1g0190581 45.763 59 30 1 13 69 510 568 3.41e-11 56.6
Msa1274640 MtrunA17_Chr6g0474861 52.542 59 26 1 12 68 274 332 3.58e-11 56.6
Msa1274640 MtrunA17_Chr6g0474871 52.542 59 26 1 12 68 553 611 3.59e-11 56.6
Msa1274640 MtrunA17_Chr7g0237401 48.571 70 32 3 2 68 71 139 3.67e-11 56.6
Msa1274640 MtrunA17_Chr1g0203631 46.667 60 30 1 12 69 980 1039 3.72e-11 56.6
Msa1274640 MtrunA17_Chr7g0263591 48.214 56 29 0 13 68 594 649 3.92e-11 56.6
Msa1274640 MtrunA17_Chr5g0394011 43.662 71 36 2 2 68 327 397 4.00e-11 56.6
Msa1274640 MtrunA17_Chr7g0236691 50.000 58 27 1 13 68 489 546 4.11e-11 56.2
Msa1274640 MtrunA17_Chr2g0292501 45.902 61 31 1 11 69 507 567 4.40e-11 56.2
Msa1274640 MtrunA17_Chr7g0251771 48.571 70 33 2 2 68 28 97 4.47e-11 56.2
Msa1274640 MtrunA17_Chr4g0061201 49.153 59 28 1 13 69 796 854 4.51e-11 56.2
Msa1274640 MtrunA17_Chr8g0347571 52.542 59 26 1 12 68 558 616 4.72e-11 56.2
Msa1274640 MtrunA17_Chr1g0194541 44.828 58 30 1 14 69 280 337 5.15e-11 56.2
Msa1274640 MtrunA17_Chr4g0053521 59.184 49 18 1 22 68 1056 1104 5.35e-11 56.2
Msa1274640 MtrunA17_Chr7g0219781 45.833 72 35 2 2 69 511 582 5.36e-11 56.2
Msa1274640 MtrunA17_Chr2g0312571 46.970 66 33 1 5 68 26 91 5.94e-11 55.8
Msa1274640 MtrunA17_Chr4g0030441 46.667 60 30 1 12 69 487 546 6.25e-11 55.8
Msa1274640 MtrunA17_Chr2g0329401 45.455 66 32 2 7 68 504 569 6.27e-11 55.8
Msa1274640 MtrunA17_Chr7g0219671 44.444 72 36 2 2 69 508 579 6.58e-11 55.8
Msa1274640 MtrunA17_Chr8g0373501 45.455 66 34 1 5 68 317 382 6.72e-11 55.8
Msa1274640 MtrunA17_Chr2g0314881 53.448 58 25 1 13 68 217 274 6.75e-11 55.8
Msa1274640 MtrunA17_Chr4g0053561 57.143 49 19 1 22 68 438 486 6.82e-11 55.8
Msa1274640 MtrunA17_Chr2g0280771 51.724 58 26 1 13 68 471 528 6.84e-11 55.8
Msa1274640 MtrunA17_Chr4g0055011 51.724 58 26 1 13 68 60 117 6.93e-11 55.8
Msa1274640 MtrunA17_Chr6g0467631 43.662 71 38 1 1 69 326 396 7.06e-11 55.8
Msa1274640 MtrunA17_Chr8g0358821 50.000 58 27 1 13 68 678 735 7.64e-11 55.5
Msa1274640 MtrunA17_Chr7g0239371 50.820 61 27 2 11 68 325 385 7.86e-11 55.5
Msa1274640 MtrunA17_Chr8g0340091 51.111 45 22 0 24 68 533 577 9.07e-11 55.5
Msa1274640 MtrunA17_Chr4g0042351 53.571 56 24 1 16 69 445 500 9.60e-11 55.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1274640 AT5G16900.2 61.538 65 25 0 5 69 555 619 1.59e-21 86.3
Msa1274640 AT5G16900.4 61.538 65 25 0 5 69 369 433 1.59e-21 86.3
Msa1274640 AT5G16900.1 61.538 65 25 0 5 69 555 619 1.62e-21 86.3
Msa1274640 AT5G16900.3 61.538 65 25 0 5 69 555 619 1.62e-21 86.3
Msa1274640 AT2G04300.2 55.385 65 29 0 5 69 564 628 6.52e-21 84.7
Msa1274640 AT2G04300.1 55.385 65 29 0 5 69 523 587 6.71e-21 84.7
Msa1274640 AT1G51810.1 53.846 65 30 0 5 69 432 496 1.29e-19 80.9
Msa1274640 AT2G28960.1 53.731 67 31 0 3 69 421 487 1.41e-19 80.9
Msa1274640 AT2G28960.2 53.731 67 31 0 3 69 553 619 1.44e-19 80.9
Msa1274640 AT1G51890.5 61.290 62 23 1 8 69 283 343 4.88e-19 79.3
Msa1274640 AT1G51890.4 61.290 62 23 1 8 69 491 551 5.07e-19 79.3
Msa1274640 AT1G51890.1 61.290 62 23 1 8 69 555 615 5.08e-19 79.3
Msa1274640 AT1G51890.2 61.290 62 23 1 8 69 555 615 5.65e-19 79.0
Msa1274640 AT1G51880.2 58.462 65 26 1 5 69 566 629 6.23e-19 79.0
Msa1274640 AT1G51880.3 58.462 65 26 1 5 69 574 637 6.42e-19 79.0
Msa1274640 AT1G51880.1 58.462 65 26 1 5 69 548 611 6.93e-19 79.0
Msa1274640 AT3G21340.1 50.769 65 32 0 5 69 574 638 7.14e-19 79.0
Msa1274640 AT1G51890.3 61.290 62 23 1 8 69 555 615 7.76e-19 78.6
Msa1274640 AT2G29000.1 50.725 69 34 0 1 69 543 611 8.02e-19 78.6
Msa1274640 AT1G51830.1 47.692 65 34 0 5 69 368 432 1.03e-18 78.6
Msa1274640 AT1G51830.2 47.692 65 34 0 5 69 375 439 1.13e-18 78.2
Msa1274640 AT3G46370.2 53.846 65 30 0 5 69 469 533 1.19e-18 78.2
Msa1274640 AT3G46370.1 53.846 65 30 0 5 69 469 533 1.19e-18 78.2
Msa1274640 AT4G20450.2 54.545 66 30 0 3 68 571 636 2.17e-18 77.4
Msa1274640 AT4G20450.1 54.545 66 30 0 3 68 571 636 2.23e-18 77.4
Msa1274640 AT3G21340.2 50.769 65 32 0 5 69 574 638 2.92e-18 77.0
Msa1274640 AT1G51860.2 55.385 65 28 1 5 69 422 485 4.07e-18 76.6
Msa1274640 AT1G51860.1 55.385 65 28 1 5 69 566 629 4.64e-18 76.6
Msa1274640 AT1G51850.1 50.769 65 32 0 5 69 540 604 5.01e-18 76.3
Msa1274640 AT1G51850.2 50.769 65 32 0 5 69 560 624 6.09e-18 76.3
Msa1274640 AT2G19210.1 51.515 66 31 1 4 69 557 621 1.09e-17 75.5
Msa1274640 AT1G51805.2 49.231 65 33 0 5 69 535 599 1.29e-17 75.1
Msa1274640 AT1G51805.1 49.231 65 33 0 5 69 559 623 1.70e-17 75.1
Msa1274640 AT1G51870.2 53.846 65 29 1 5 69 565 628 1.76e-17 74.7
Msa1274640 AT1G51870.1 53.846 65 29 1 5 69 513 576 1.87e-17 74.7
Msa1274640 AT1G51820.2 47.692 65 34 0 5 69 298 362 1.91e-17 74.7
Msa1274640 AT1G51820.1 47.692 65 34 0 5 69 560 624 2.36e-17 74.3
Msa1274640 AT1G07550.1 50.746 67 32 1 3 69 540 605 4.58e-17 73.6
Msa1274640 AT2G19190.1 53.846 65 29 1 4 68 555 618 4.86e-17 73.6
Msa1274640 AT1G07560.1 52.542 59 28 0 11 69 558 616 5.68e-17 73.6
Msa1274640 AT4G29990.2 53.030 66 30 1 4 69 555 619 5.71e-17 73.6
Msa1274640 AT2G28970.2 52.308 65 31 0 5 69 426 490 6.68e-17 73.2
Msa1274640 AT2G19230.1 57.895 57 23 1 13 69 560 615 7.94e-17 73.2
Msa1274640 AT2G28970.1 52.308 65 31 0 5 69 461 525 8.37e-17 72.8
Msa1274640 AT5G59660.2 52.542 59 28 0 9 67 474 532 8.46e-17 72.8
Msa1274640 AT3G46330.1 53.226 62 29 0 8 69 551 612 9.25e-17 72.8
Msa1274640 AT2G19230.2 57.895 57 23 1 13 69 559 614 9.90e-17 72.8
Msa1274640 AT3G46330.2 53.226 62 29 0 8 69 527 588 1.02e-16 72.8
Msa1274640 AT5G59660.3 52.542 59 28 0 9 67 499 557 1.08e-16 72.8
Msa1274640 AT1G49100.1 49.206 63 32 0 7 69 565 627 1.48e-16 72.4
Msa1274640 AT4G29990.1 53.030 66 30 1 4 69 555 619 1.85e-16 72.0
Msa1274640 AT2G14510.1 52.239 67 31 1 3 69 543 608 1.94e-16 72.0
Msa1274640 AT2G14510.2 52.239 67 31 1 3 69 551 616 1.98e-16 72.0
Msa1274640 AT2G14440.1 52.239 67 31 1 3 69 544 609 2.18e-16 71.6
Msa1274640 AT3G46400.1 51.613 62 30 0 8 69 561 622 5.15e-16 70.9
Msa1274640 AT5G59660.1 51.667 60 29 0 9 68 496 555 9.70e-16 70.1
Msa1274640 AT5G59670.2 53.333 60 28 0 9 68 550 609 1.34e-15 69.7
Msa1274640 AT5G59670.1 53.333 60 28 0 9 68 550 609 1.34e-15 69.7
Msa1274640 AT1G51800.1 46.875 64 33 1 6 69 569 631 2.34e-15 68.9
Msa1274640 AT3G46340.1 50.000 66 32 1 5 69 567 632 3.01e-15 68.6
Msa1274640 AT2G28990.2 53.846 65 30 0 5 69 559 623 3.42e-15 68.6
Msa1274640 AT2G28990.1 53.846 65 30 0 5 69 559 623 3.42e-15 68.6
Msa1274640 AT3G46420.1 57.407 54 23 0 16 69 524 577 5.56e-15 67.8
Msa1274640 AT1G51910.1 53.030 66 29 2 5 69 555 619 6.57e-15 67.4
Msa1274640 AT1G05700.2 52.632 57 26 1 13 69 591 646 3.88e-14 65.5
Msa1274640 AT1G05700.1 52.632 57 26 1 13 69 560 615 3.92e-14 65.5
Msa1274640 AT4G02010.1 53.448 58 25 1 13 68 368 425 1.93e-13 63.5
Msa1274640 AT5G38210.1 44.615 65 36 0 4 68 339 403 4.22e-13 62.4
Msa1274640 AT5G54380.1 44.928 69 34 2 5 69 488 556 5.26e-13 62.0
Msa1274640 AT3G24540.1 50.000 68 31 2 4 68 161 228 5.97e-13 62.0
Msa1274640 AT5G38210.2 44.615 65 36 0 4 68 351 415 6.11e-13 62.0
Msa1274640 AT5G38210.3 44.615 65 36 0 4 68 333 397 6.94e-13 62.0
Msa1274640 AT5G35370.1 43.056 72 36 1 2 68 489 560 9.00e-13 61.6
Msa1274640 AT1G06840.1 50.820 61 28 1 11 69 611 671 1.00e-12 61.2
Msa1274640 AT1G66880.2 44.068 59 33 0 11 69 576 634 1.09e-12 61.2
Msa1274640 AT1G66880.1 44.068 59 33 0 11 69 955 1013 1.09e-12 61.2
Msa1274640 AT1G66880.3 44.068 59 33 0 11 69 334 392 1.16e-12 61.2
Msa1274640 AT4G11470.1 50.847 59 27 1 12 68 326 384 1.25e-12 61.2
Msa1274640 AT5G01950.5 45.763 59 30 1 13 69 614 672 1.29e-12 61.2
Msa1274640 AT5G01950.6 45.763 59 30 1 13 69 614 672 1.29e-12 61.2
Msa1274640 AT5G01950.2 45.763 59 30 1 13 69 529 587 1.29e-12 61.2
Msa1274640 AT5G01950.3 45.763 59 30 1 13 69 614 672 1.30e-12 61.2
Msa1274640 AT5G01950.1 45.763 59 30 1 13 69 614 672 1.30e-12 61.2
Msa1274640 AT5G01950.4 45.763 59 30 1 13 69 614 672 1.30e-12 61.2
Msa1274640 AT5G01950.8 45.763 59 30 1 13 69 614 672 1.30e-12 61.2
Msa1274640 AT5G01950.7 45.763 59 30 1 13 69 614 672 1.30e-12 61.2
Msa1274640 AT4G11470.2 50.847 59 27 1 12 68 331 389 1.40e-12 60.8
Msa1274640 AT5G56890.1 47.541 61 30 1 11 69 709 769 1.56e-12 60.8
Msa1274640 AT1G23540.2 51.562 64 29 1 8 69 354 417 2.43e-12 60.1
Msa1274640 AT4G29450.1 50.980 51 25 0 8 58 551 601 2.51e-12 60.1
Msa1274640 AT2G39360.1 50.000 60 28 1 12 69 474 533 2.87e-12 60.1
Msa1274640 AT4G39110.1 52.542 59 26 1 13 69 514 572 3.18e-12 60.1
Msa1274640 AT1G30570.1 51.667 60 27 1 11 68 506 565 3.75e-12 59.7
Msa1274640 AT2G21480.1 49.153 59 28 1 13 69 513 571 5.13e-12 59.3
Msa1274640 AT1G11410.2 50.847 59 27 1 13 69 396 454 6.20e-12 59.3
Msa1274640 AT3G53590.1 45.000 60 31 1 11 68 607 666 6.56e-12 58.9
Msa1274640 AT1G11410.3 50.847 59 27 1 13 69 487 545 6.60e-12 58.9
Msa1274640 AT1G23540.1 54.237 59 25 1 13 69 359 417 7.04e-12 58.9
Msa1274640 AT1G11410.1 50.847 59 27 1 13 69 511 569 7.42e-12 58.9
Msa1274640 AT1G11410.4 50.847 59 27 1 13 69 518 576 7.57e-12 58.9
Msa1274640 AT4G23180.1 54.237 59 25 1 12 68 335 393 7.82e-12 58.9
Msa1274640 AT1G11340.2 49.153 59 28 1 13 69 571 629 8.24e-12 58.9
Msa1274640 AT1G61360.2 47.458 59 29 1 13 69 405 463 9.44e-12 58.5
Msa1274640 AT1G61360.3 47.458 59 29 1 13 69 405 463 9.44e-12 58.5
Msa1274640 AT1G61360.4 47.458 59 29 1 13 69 405 463 9.44e-12 58.5
Msa1274640 AT1G61360.1 47.458 59 29 1 13 69 486 544 9.56e-12 58.5
Msa1274640 AT1G61370.1 50.000 58 27 1 13 68 489 546 9.66e-12 58.5
Msa1274640 AT1G11340.1 49.153 59 28 1 13 69 503 561 1.03e-11 58.5
Msa1274640 AT5G24080.3 48.214 56 29 0 13 68 393 448 1.12e-11 58.5
Msa1274640 AT5G24080.1 48.214 56 29 0 13 68 393 448 1.12e-11 58.5
Msa1274640 AT5G24080.2 48.214 56 29 0 13 68 520 575 1.12e-11 58.5
Msa1274640 AT1G70450.1 50.000 66 31 1 6 69 30 95 1.17e-11 58.2
Msa1274640 AT4G23180.3 54.237 59 25 1 12 68 335 393 1.18e-11 58.2
Msa1274640 AT1G11340.3 49.153 59 28 1 13 69 571 629 1.24e-11 58.2
Msa1274640 AT5G38560.1 41.429 70 39 1 2 69 316 385 1.39e-11 58.2
Msa1274640 AT2G43690.1 44.068 59 32 1 11 68 323 381 1.61e-11 57.8
Msa1274640 AT2G43690.3 44.068 59 32 1 11 68 323 381 1.61e-11 57.8
Msa1274640 AT2G43690.2 44.068 59 32 1 11 68 287 345 1.81e-11 57.8
Msa1274640 AT4G29180.1 51.064 47 23 0 8 54 550 596 1.81e-11 57.8
Msa1274640 AT4G23180.2 54.237 59 25 1 12 68 335 393 1.89e-11 57.8
Msa1274640 AT1G70460.1 50.000 66 31 1 6 69 334 399 1.91e-11 57.8
Msa1274640 AT1G26150.2 42.029 69 38 1 2 68 407 475 1.94e-11 57.8
Msa1274640 AT1G26150.1 42.029 69 38 1 2 68 407 475 1.95e-11 57.8
Msa1274640 AT4G29180.3 51.064 47 23 0 8 54 549 595 2.10e-11 57.8
Msa1274640 AT1G56120.2 48.485 66 32 1 5 68 672 737 2.10e-11 57.8
Msa1274640 AT4G29180.2 51.064 47 23 0 8 54 552 598 2.27e-11 57.4
Msa1274640 AT1G56120.1 48.485 66 32 1 5 68 690 755 2.43e-11 57.4
Msa1274640 AT1G61500.1 51.724 58 26 1 13 68 479 536 2.88e-11 57.4
Msa1274640 AT1G51790.3 50.000 60 29 1 10 69 564 622 2.92e-11 57.4
Msa1274640 AT1G51790.1 50.000 60 29 1 10 69 564 622 2.92e-11 57.4
Msa1274640 AT1G61500.3 51.724 58 26 1 13 68 484 541 3.12e-11 57.0
Msa1274640 AT1G61500.2 51.724 58 26 1 13 68 461 518 3.21e-11 57.0
Msa1274640 AT4G23310.1 49.153 59 28 1 12 68 495 553 3.28e-11 57.0
Msa1274640 AT4G23310.2 49.153 59 28 1 12 68 455 513 3.37e-11 57.0
Msa1274640 AT5G10290.1 44.444 72 37 2 1 69 266 337 3.48e-11 57.0
Msa1274640 AT5G10290.2 44.444 72 37 2 1 69 266 337 3.48e-11 57.0
Msa1274640 AT1G79620.2 47.458 59 29 1 13 69 626 684 3.61e-11 57.0
Msa1274640 AT1G51790.2 50.000 60 29 1 10 69 616 674 3.77e-11 57.0
Msa1274640 AT1G52290.2 45.763 59 30 1 13 69 131 189 3.95e-11 56.6
Msa1274640 AT5G24010.1 49.153 59 28 1 12 68 476 534 4.31e-11 56.6
Msa1274640 AT3G04690.1 45.902 61 31 1 11 69 503 563 4.57e-11 56.6
Msa1274640 AT2G13790.1 50.000 62 28 2 11 69 280 341 4.57e-11 56.6
Msa1274640 AT1G56120.3 48.485 66 32 1 5 68 524 589 4.71e-11 56.6
Msa1274640 AT1G79620.3 47.458 59 29 1 13 69 626 684 5.02e-11 56.6
Msa1274640 AT4G11490.1 57.500 40 17 0 28 67 326 365 5.51e-11 56.6
Msa1274640 AT4G11480.3 47.458 59 29 1 12 68 311 369 5.52e-11 56.6
Msa1274640 AT4G32710.1 48.276 58 28 1 13 68 377 434 5.54e-11 56.6
Msa1274640 AT4G11480.4 47.458 59 29 1 12 68 308 366 5.85e-11 56.2
Msa1274640 AT5G28680.1 44.262 61 32 1 11 69 507 567 5.90e-11 56.2
Msa1274640 AT5G28680.2 44.262 61 32 1 11 69 507 567 5.90e-11 56.2
Msa1274640 AT4G11480.1 47.458 59 29 1 12 68 308 366 5.97e-11 56.2
Msa1274640 AT1G79620.5 47.458 59 29 1 13 69 652 710 6.04e-11 56.2
Msa1274640 AT1G61370.2 50.000 58 27 1 13 68 338 395 6.15e-11 56.2
Msa1274640 AT3G09010.1 48.276 58 28 1 13 68 34 91 6.16e-11 56.2
Msa1274640 AT5G61350.1 50.847 59 27 1 13 69 513 571 6.50e-11 56.2
Msa1274640 AT1G61860.1 50.847 59 26 2 13 68 73 131 6.52e-11 56.2
Msa1274640 AT1G20650.1 45.000 60 31 1 11 68 64 123 6.63e-11 56.2
Msa1274640 AT1G79620.1 47.458 59 29 1 13 69 626 684 6.85e-11 56.2
Msa1274640 AT4G11480.2 47.458 59 29 1 12 68 311 369 7.04e-11 56.2
Msa1274640 AT1G53440.1 50.000 58 27 1 13 68 655 712 7.28e-11 56.2
Msa1274640 AT1G53430.1 50.000 58 27 1 13 68 657 714 7.42e-11 56.2
Msa1274640 AT1G10620.1 49.153 59 28 1 13 69 358 416 7.87e-11 55.8
Msa1274640 AT1G53430.2 50.000 58 27 1 13 68 616 673 8.34e-11 55.8
Msa1274640 AT1G74360.1 44.068 59 31 1 13 69 802 860 8.60e-11 55.8
Msa1274640 AT2G45910.2 48.276 58 27 2 13 68 469 525 8.98e-11 55.8
Msa1274640 AT2G45910.1 48.276 58 27 2 13 68 469 525 8.98e-11 55.8
Msa1274640 AT3G09010.2 48.276 58 28 1 13 68 34 91 9.10e-11 55.8

Find 14 sgRNAs with CRISPR-Local

Find 12 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATAACTTCAAAACCATTAT+TGG 0.169287 8_3:+8493893 Msa1274640:CDS
AAATCCTCCTTCTCCAATAA+TGG 0.270091 8_3:-8493906 None:intergenic
ATTATTGGAGAAGGAGGATT+TGG 0.287014 8_3:+8493908 Msa1274640:CDS
ATCATCAATGCAAGGTTATA+AGG 0.287528 8_3:+8493991 Msa1274640:CDS
AAACTCAAGTTGCTGTTAAG+AGG 0.376628 8_3:+8493960 Msa1274640:CDS
GTCTTCAAATTCTATGGAAA+GGG 0.391246 8_3:+8493814 None:intergenic
GGATTTGGAAAAGTTTACTT+TGG 0.469458 8_3:+8493923 Msa1274640:CDS
CGTCTTCAAATTCTATGGAA+AGG 0.492205 8_3:+8493813 None:intergenic
TTATAACCTTGCATTGATGA+TGG 0.493034 8_3:-8493989 None:intergenic
TTCAAAACCATTATTGGAGA+AGG 0.505131 8_3:+8493899 Msa1274640:CDS
AAAACCATTATTGGAGAAGG+AGG 0.525891 8_3:+8493902 Msa1274640:CDS
TTATAAGGAATTTCAATCAG+AGG 0.570275 8_3:+8494006 Msa1274640:CDS
TCTTCAAATTCTATGGAAAG+GGG 0.588935 8_3:+8493815 None:intergenic
CTTTCACCATCATCAATGCA+AGG 0.613023 8_3:+8493983 Msa1274640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCTGTATAAGTGAATTTT+TGG - chr8_3:8493859-8493878 None:intergenic 20.0%
! GATAACTTCAAAACCATTAT+TGG + chr8_3:8493893-8493912 Msa1274640:CDS 25.0%
! TTATAAGGAATTTCAATCAG+AGG + chr8_3:8494006-8494025 Msa1274640:CDS 25.0%
TTCAAAACCATTATTGGAGA+AGG + chr8_3:8493899-8493918 Msa1274640:CDS 30.0%
GGATTTGGAAAAGTTTACTT+TGG + chr8_3:8493923-8493942 Msa1274640:CDS 30.0%
! TTATAACCTTGCATTGATGA+TGG - chr8_3:8493992-8494011 None:intergenic 30.0%
ATCATCAATGCAAGGTTATA+AGG + chr8_3:8493991-8494010 Msa1274640:CDS 30.0%
AAAACCATTATTGGAGAAGG+AGG + chr8_3:8493902-8493921 Msa1274640:CDS 35.0%
AAATCCTCCTTCTCCAATAA+TGG - chr8_3:8493909-8493928 None:intergenic 35.0%
ATTATTGGAGAAGGAGGATT+TGG + chr8_3:8493908-8493927 Msa1274640:CDS 35.0%
! AAACTCAAGTTGCTGTTAAG+AGG + chr8_3:8493960-8493979 Msa1274640:CDS 35.0%
CTTTCACCATCATCAATGCA+AGG + chr8_3:8493983-8494002 Msa1274640:CDS 40.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 8493827 8494036 8493827 ID=Msa1274640;Name=Msa1274640
chr8_3 mRNA 8493827 8494036 8493827 ID=Msa1274640-mRNA-1;Parent=Msa1274640;Name=Msa1274640-mRNA-1;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|69
chr8_3 exon 8493827 8494036 8493827 ID=Msa1274640-mRNA-1:exon:3545;Parent=Msa1274640-mRNA-1
chr8_3 CDS 8493827 8494036 8493827 ID=Msa1274640-mRNA-1:cds;Parent=Msa1274640-mRNA-1
Gene Sequence

>Msa1274640

ATGGAAAGGGGTTCAATGATATCAAAACACCAAAAATTCACTTATACAGAAATTCTCAATATTACTGATAACTTCAAAACCATTATTGGAGAAGGAGGATTTGGAAAAGTTTACTTTGGCATTCTACAAGATCAAACTCAAGTTGCTGTTAAGAGGCTTTCACCATCATCAATGCAAGGTTATAAGGAATTTCAATCAGAGGTTAAGTAA
Protein sequence

>Msa1274640

MERGSMISKHQKFTYTEILNITDNFKTIIGEGGFGKVYFGILQDQTQVAVKRLSPSSMQGYKEFQSEVK*