Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277140 | sp|Q8GX84|C3H1_ARATH | 67.405 | 316 | 97 | 4 | 13 | 326 | 25 | 336 | 8.53e-155 | 440 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277140 | A0A072U502 | 88.110 | 328 | 36 | 2 | 1 | 326 | 1 | 327 | 0.0 | 581 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1277140 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277140 | MtrunA17_Chr7g0269781 | 88.110 | 328 | 36 | 2 | 1 | 326 | 1 | 327 | 0.0 | 581 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277140 | AT1G01350.1 | 67.405 | 316 | 97 | 4 | 13 | 326 | 25 | 336 | 8.67e-156 | 440 |
| Msa1277140 | AT5G06420.1 | 66.352 | 318 | 98 | 4 | 11 | 326 | 61 | 371 | 4.15e-155 | 439 |
| Msa1277140 | AT5G06420.2 | 66.352 | 318 | 98 | 4 | 11 | 326 | 61 | 371 | 4.15e-155 | 439 |
| Msa1277140 | AT4G01023.1 | 66.102 | 59 | 20 | 0 | 257 | 315 | 76 | 134 | 4.37e-27 | 107 |
| Msa1277140 | AT4G01023.3 | 66.102 | 59 | 20 | 0 | 257 | 315 | 95 | 153 | 1.22e-26 | 105 |
| Msa1277140 | AT4G01023.2 | 66.102 | 59 | 20 | 0 | 257 | 315 | 95 | 153 | 1.42e-26 | 105 |
Find 87 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCCCTACAACATATATTT+TGG | 0.071603 | 8_3:+12278925 | None:intergenic |
| TCCATTTAACACAGTTAAAA+TGG | 0.113171 | 8_3:+12279026 | None:intergenic |
| TTCCTACTTATTCATCTTAA+AGG | 0.182629 | 8_3:+12278893 | None:intergenic |
| GTGGGTCACACGGTCCTCTC+AGG | 0.313412 | 8_3:-12279687 | Msa1277140:CDS |
| CTCATATTCTTCTTATTAAG+AGG | 0.321707 | 8_3:+12280123 | None:intergenic |
| TGTTCAGTTTGGTGATTTGC+AGG | 0.323435 | 8_3:+12280290 | None:intergenic |
| TATACATACCTTGTTCAGTT+TGG | 0.352276 | 8_3:+12280279 | None:intergenic |
| CTTGTATAATTGTACATCTT+CGG | 0.375485 | 8_3:+12279780 | None:intergenic |
| GGATATATGCAAGGATTATA+AGG | 0.382708 | 8_3:-12279620 | Msa1277140:CDS |
| TATTGAGTTCAAAACATGTT+AGG | 0.385037 | 8_3:-12278993 | Msa1277140:three_prime_UTR |
| TTATAATCCTTGCATATATC+CGG | 0.408034 | 8_3:+12279622 | None:intergenic |
| TAGCAAAGCAACCGCAACTT+TGG | 0.426930 | 8_3:-12279896 | Msa1277140:CDS |
| AAAATGAAAGCTAGGTTTCT+CGG | 0.428578 | 8_3:+12279951 | None:intergenic |
| CTTGCTTAAGAGCTCTTTCA+CGG | 0.431115 | 8_3:+12279836 | None:intergenic |
| CATCCCAAAATATATGTTGT+AGG | 0.435944 | 8_3:-12278929 | Msa1277140:three_prime_UTR |
| CTGTGAGCATTGTGCATTGA+AGG | 0.436410 | 8_3:-12279335 | Msa1277140:intron |
| AAAATAGTCATTGATTGTAC+TGG | 0.438865 | 8_3:+12279089 | None:intergenic |
| GTTGAGACAGGATCCACAAA+TGG | 0.441292 | 8_3:+12279376 | None:intergenic |
| TGCTTGCACTTGGTTGAGAC+AGG | 0.443250 | 8_3:+12279364 | None:intergenic |
| GGTTTCTCGGATTCTTCGTT+CGG | 0.443791 | 8_3:+12279964 | None:intergenic |
| CATTTGTAGAAACCCATTTG+TGG | 0.445516 | 8_3:-12279389 | Msa1277140:CDS |
| ATCCCAAAATATATGTTGTA+GGG | 0.445596 | 8_3:-12278928 | Msa1277140:three_prime_UTR |
| TATAAGGAAACGGGTTATTG+TGG | 0.448344 | 8_3:-12279604 | Msa1277140:CDS |
| AAAATGGGAAAACAAAATAG+AGG | 0.451860 | 8_3:+12279042 | None:intergenic |
| CCATTTAACACAGTTAAAAT+GGG | 0.452565 | 8_3:+12279027 | None:intergenic |
| TGCAAGGATTATAAGGAAAC+GGG | 0.452960 | 8_3:-12279613 | Msa1277140:CDS |
| ATGCAAGGATTATAAGGAAA+CGG | 0.454788 | 8_3:-12279614 | Msa1277140:CDS |
| AAAGACTCAAAATGAAAGCT+AGG | 0.461332 | 8_3:+12279943 | None:intergenic |
| CAATAATTACACAGATCATA+AGG | 0.476447 | 8_3:-12279752 | Msa1277140:CDS |
| GAAAGCTAGGAGGATGAGAT+TGG | 0.478340 | 8_3:-12279497 | Msa1277140:CDS |
| GATCGAGGTGATTACAAACC+TGG | 0.480856 | 8_3:-12279553 | Msa1277140:CDS |
| GAAACGGGTTATTGTGGGTA+TGG | 0.484427 | 8_3:-12279598 | Msa1277140:CDS |
| TACCTTTAAGATGAATAAGT+AGG | 0.486200 | 8_3:-12278895 | Msa1277140:three_prime_UTR |
| TCCTTCTCCATCTGCCACCC+AGG | 0.487229 | 8_3:+12279535 | None:intergenic |
| CGAAGATGTACAATTATACA+AGG | 0.488171 | 8_3:-12279779 | Msa1277140:CDS |
| GCAAACAATTGCTAGTGAAA+AGG | 0.493544 | 8_3:-12279713 | Msa1277140:CDS |
| ATAAGGAAACGGGTTATTGT+GGG | 0.494975 | 8_3:-12279603 | Msa1277140:CDS |
| GTGGCAGATGGAGAAGGAAT+GGG | 0.495492 | 8_3:-12279530 | Msa1277140:CDS |
| CTACAAATGAAACACGCAAA+TGG | 0.511076 | 8_3:+12279403 | None:intergenic |
| GGGATGAAGCTGAGAAAGCT+AGG | 0.513238 | 8_3:-12279510 | Msa1277140:CDS |
| GAGCTCTTTCACGGATGGCA+CGG | 0.524231 | 8_3:+12279845 | None:intergenic |
| TTGAGACAGGATCCACAAAT+GGG | 0.525917 | 8_3:+12279377 | None:intergenic |
| AGCAAGATTTGATTATCAGC+CGG | 0.527438 | 8_3:-12279641 | Msa1277140:CDS |
| TGGATGAGTTTATTTATCCT+CGG | 0.527485 | 8_3:+12279109 | None:intergenic |
| TGGGTCACACGGTCCTCTCA+GGG | 0.532282 | 8_3:-12279686 | Msa1277140:CDS |
| GGTGGCAGATGGAGAAGGAA+TGG | 0.534084 | 8_3:-12279531 | Msa1277140:CDS |
| CTCTTAATAAGAAGAATATG+AGG | 0.536262 | 8_3:-12280122 | Msa1277140:CDS |
| CTTAAGAGCTCTTTCACGGA+TGG | 0.538525 | 8_3:+12279840 | None:intergenic |
| TGCAAGTGAAGATGCAGAAG+AGG | 0.539016 | 8_3:-12279473 | Msa1277140:CDS |
| AATTACACAGATCATAAGGC+TGG | 0.540860 | 8_3:-12279748 | Msa1277140:CDS |
| GCGAAGCACTATTGAGAATG+AGG | 0.543921 | 8_3:-12280097 | Msa1277140:CDS |
| TTCTTCGTTCGGTTTAGCAT+AGG | 0.544425 | 8_3:+12279975 | None:intergenic |
| AAATGGGAAAACAAAATAGA+GGG | 0.549988 | 8_3:+12279043 | None:intergenic |
| ACAGAAGTAGTGCTTGCACT+TGG | 0.557721 | 8_3:+12279354 | None:intergenic |
| TATTAGTATGGAAGATTCTG+AGG | 0.558250 | 8_3:-12280321 | None:intergenic |
| AGCTCTTTCACGGATGGCAC+GGG | 0.560125 | 8_3:+12279846 | None:intergenic |
| TTACAAACCTGGGTGGCAGA+TGG | 0.560301 | 8_3:-12279542 | Msa1277140:CDS |
| TCATGAGATACGAAAGAAGA+TGG | 0.562670 | 8_3:-12279132 | Msa1277140:CDS |
| AAGTGAAGATGCAGAAGAGG+AGG | 0.575195 | 8_3:-12279470 | Msa1277140:CDS |
| CAAGCGACAGAGAGTCTCAA+GGG | 0.580990 | 8_3:-12279817 | Msa1277140:CDS |
| ACCTGGGTGGCAGATGGAGA+AGG | 0.582406 | 8_3:-12279536 | Msa1277140:CDS |
| ACAATTGCTAGTGAAAAGGC+TGG | 0.588134 | 8_3:-12279709 | Msa1277140:CDS |
| TTGCTAGTGAAAAGGCTGGT+GGG | 0.588909 | 8_3:-12279705 | Msa1277140:CDS |
| TGTGTTAAATGGAGATGCTA+TGG | 0.589908 | 8_3:-12279016 | Msa1277140:three_prime_UTR |
| AGAGGTCTTTGAAGAGGCGG+TGG | 0.593488 | 8_3:+12279999 | None:intergenic |
| GCAAGCGACAGAGAGTCTCA+AGG | 0.594111 | 8_3:-12279818 | Msa1277140:CDS |
| TGTAAATTTATGCATGATCG+AGG | 0.594891 | 8_3:-12279568 | Msa1277140:CDS |
| ATAGGCAGAGGTCTTTGAAG+AGG | 0.595176 | 8_3:+12279993 | None:intergenic |
| GCAAATCACCAAACTGAACA+AGG | 0.596043 | 8_3:-12280287 | Msa1277140:intron |
| GGCAGAGGTCTTTGAAGAGG+CGG | 0.605264 | 8_3:+12279996 | None:intergenic |
| GAAAAGGCTGGTGGGTCACA+CGG | 0.605641 | 8_3:-12279697 | Msa1277140:CDS |
| ATCGAGGTGATTACAAACCT+GGG | 0.606572 | 8_3:-12279552 | Msa1277140:CDS |
| ATTGCTAGTGAAAAGGCTGG+TGG | 0.609608 | 8_3:-12279706 | Msa1277140:CDS |
| AGCACTATTGAGAATGAGGA+TGG | 0.610986 | 8_3:-12280093 | Msa1277140:CDS |
| AGTGAAGATGCAGAAGAGGA+GGG | 0.615274 | 8_3:-12279469 | Msa1277140:CDS |
| TCCCAAAATATATGTTGTAG+GGG | 0.624068 | 8_3:-12278927 | Msa1277140:three_prime_UTR |
| GATACGAAAGAAGATGGCCG+AGG | 0.629597 | 8_3:-12279126 | Msa1277140:CDS |
| TTATCAGCCGGATATATGCA+AGG | 0.629970 | 8_3:-12279629 | Msa1277140:CDS |
| AATGGGAAAACAAAATAGAG+GGG | 0.631338 | 8_3:+12279044 | None:intergenic |
| AGTCTCAGTCTCCAAAGTTG+CGG | 0.641815 | 8_3:+12279885 | None:intergenic |
| ATGGGAAAACAAAATAGAGG+GGG | 0.648841 | 8_3:+12279045 | None:intergenic |
| TGAGGATGGCTCGAACAATG+AGG | 0.664875 | 8_3:-12280079 | Msa1277140:CDS |
| TAGTTTGAATGATGAAGATG+AGG | 0.668595 | 8_3:-12279443 | Msa1277140:CDS |
| ATGTGAGCTGAAGCCCTGAG+AGG | 0.679042 | 8_3:+12279673 | None:intergenic |
| ATGAAGCTGAGAAAGCTAGG+AGG | 0.680791 | 8_3:-12279507 | Msa1277140:CDS |
| GAAGATGTACAATTATACAA+GGG | 0.702149 | 8_3:-12279778 | Msa1277140:CDS |
| GAGGTGATTACAAACCTGGG+TGG | 0.757244 | 8_3:-12279549 | Msa1277140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | CTCATATTCTTCTTATTAAG+AGG | + | chr8_3:12279089-12279108 | None:intergenic | 25.0% |
| ! | CTCTTAATAAGAAGAATATG+AGG | - | chr8_3:12279087-12279106 | Msa1277140:three_prime_UTR | 25.0% |
| ! | CTTGTATAATTGTACATCTT+CGG | + | chr8_3:12279432-12279451 | None:intergenic | 25.0% |
| ! | GAAGATGTACAATTATACAA+GGG | - | chr8_3:12279431-12279450 | Msa1277140:CDS | 25.0% |
| ! | CAATAATTACACAGATCATA+AGG | - | chr8_3:12279457-12279476 | Msa1277140:CDS | 25.0% |
| ! | TTATAATCCTTGCATATATC+CGG | + | chr8_3:12279590-12279609 | None:intergenic | 25.0% |
| !!! | CTTATTTGCTTTGAAGTTAA+GGG | + | chr8_3:12279904-12279923 | None:intergenic | 25.0% |
| !!! | ACTTATTTGCTTTGAAGTTA+AGG | + | chr8_3:12279905-12279924 | None:intergenic | 25.0% |
| ! | GAAGTTAGGCATATTTAAAA+GGG | + | chr8_3:12279974-12279993 | None:intergenic | 25.0% |
| ! | AGAAGTTAGGCATATTTAAA+AGG | + | chr8_3:12279975-12279994 | None:intergenic | 25.0% |
| ! | AAGTAAAATGAACAGAAGTT+AGG | + | chr8_3:12279988-12280007 | None:intergenic | 25.0% |
| !! | AAAATAGTCATTGATTGTAC+TGG | + | chr8_3:12280123-12280142 | None:intergenic | 25.0% |
| ! | AAATGGGAAAACAAAATAGA+GGG | + | chr8_3:12280169-12280188 | None:intergenic | 25.0% |
| ! | AAAATGGGAAAACAAAATAG+AGG | + | chr8_3:12280170-12280189 | None:intergenic | 25.0% |
| ! | CCATTTAACACAGTTAAAAT+GGG | + | chr8_3:12280185-12280204 | None:intergenic | 25.0% |
| ! | TCCATTTAACACAGTTAAAA+TGG | + | chr8_3:12280186-12280205 | None:intergenic | 25.0% |
| ! | TATTGAGTTCAAAACATGTT+AGG | - | chr8_3:12280216-12280235 | Msa1277140:intron | 25.0% |
| ! | ATCCCAAAATATATGTTGTA+GGG | - | chr8_3:12280281-12280300 | Msa1277140:intron | 25.0% |
| !!! | TACCTTTAAGATGAATAAGT+AGG | - | chr8_3:12280314-12280333 | Msa1277140:CDS | 25.0% |
| ! | CTCATATTCTTCTTATTAAG+AGG | + | chr8_3:12279089-12279108 | None:intergenic | 25.0% |
| ! | CTCTTAATAAGAAGAATATG+AGG | - | chr8_3:12279087-12279106 | Msa1277140:three_prime_UTR | 25.0% |
| ! | CTTGTATAATTGTACATCTT+CGG | + | chr8_3:12279432-12279451 | None:intergenic | 25.0% |
| ! | GAAGATGTACAATTATACAA+GGG | - | chr8_3:12279431-12279450 | Msa1277140:CDS | 25.0% |
| ! | CAATAATTACACAGATCATA+AGG | - | chr8_3:12279457-12279476 | Msa1277140:CDS | 25.0% |
| ! | TTATAATCCTTGCATATATC+CGG | + | chr8_3:12279590-12279609 | None:intergenic | 25.0% |
| !!! | CTTATTTGCTTTGAAGTTAA+GGG | + | chr8_3:12279904-12279923 | None:intergenic | 25.0% |
| !!! | ACTTATTTGCTTTGAAGTTA+AGG | + | chr8_3:12279905-12279924 | None:intergenic | 25.0% |
| ! | GAAGTTAGGCATATTTAAAA+GGG | + | chr8_3:12279974-12279993 | None:intergenic | 25.0% |
| ! | AGAAGTTAGGCATATTTAAA+AGG | + | chr8_3:12279975-12279994 | None:intergenic | 25.0% |
| ! | AAGTAAAATGAACAGAAGTT+AGG | + | chr8_3:12279988-12280007 | None:intergenic | 25.0% |
| !! | AAAATAGTCATTGATTGTAC+TGG | + | chr8_3:12280123-12280142 | None:intergenic | 25.0% |
| ! | AAATGGGAAAACAAAATAGA+GGG | + | chr8_3:12280169-12280188 | None:intergenic | 25.0% |
| ! | AAAATGGGAAAACAAAATAG+AGG | + | chr8_3:12280170-12280189 | None:intergenic | 25.0% |
| ! | CCATTTAACACAGTTAAAAT+GGG | + | chr8_3:12280185-12280204 | None:intergenic | 25.0% |
| ! | TCCATTTAACACAGTTAAAA+TGG | + | chr8_3:12280186-12280205 | None:intergenic | 25.0% |
| ! | TATTGAGTTCAAAACATGTT+AGG | - | chr8_3:12280216-12280235 | Msa1277140:intron | 25.0% |
| ! | ATCCCAAAATATATGTTGTA+GGG | - | chr8_3:12280281-12280300 | Msa1277140:intron | 25.0% |
| TATACATACCTTGTTCAGTT+TGG | + | chr8_3:12278933-12278952 | None:intergenic | 30.0% | |
| GTACAAAGAAATAAATGCAG+AGG | + | chr8_3:12279004-12279023 | None:intergenic | 30.0% | |
| AAAATGAAAGCTAGGTTTCT+CGG | + | chr8_3:12279261-12279280 | None:intergenic | 30.0% | |
| AAAGACTCAAAATGAAAGCT+AGG | + | chr8_3:12279269-12279288 | None:intergenic | 30.0% | |
| CGAAGATGTACAATTATACA+AGG | - | chr8_3:12279430-12279449 | Msa1277140:CDS | 30.0% | |
| GGATATATGCAAGGATTATA+AGG | - | chr8_3:12279589-12279608 | Msa1277140:CDS | 30.0% | |
| ATGCAAGGATTATAAGGAAA+CGG | - | chr8_3:12279595-12279614 | Msa1277140:CDS | 30.0% | |
| TGTAAATTTATGCATGATCG+AGG | - | chr8_3:12279641-12279660 | Msa1277140:CDS | 30.0% | |
| TAGTTTGAATGATGAAGATG+AGG | - | chr8_3:12279766-12279785 | Msa1277140:CDS | 30.0% | |
| TGGATGAGTTTATTTATCCT+CGG | + | chr8_3:12280103-12280122 | None:intergenic | 30.0% | |
| !!! | CAATGACTATTTTTGCTTCT+TGG | - | chr8_3:12280130-12280149 | Msa1277140:CDS | 30.0% |
| AATGGGAAAACAAAATAGAG+GGG | + | chr8_3:12280168-12280187 | None:intergenic | 30.0% | |
| !!! | CCCATTTTAACTGTGTTAAA+TGG | - | chr8_3:12280182-12280201 | Msa1277140:intron | 30.0% |
| CATCCCAAAATATATGTTGT+AGG | - | chr8_3:12280280-12280299 | Msa1277140:intron | 30.0% | |
| TCCCAAAATATATGTTGTAG+GGG | - | chr8_3:12280282-12280301 | Msa1277140:intron | 30.0% | |
| ! | ACCCCTACAACATATATTTT+GGG | + | chr8_3:12280286-12280305 | None:intergenic | 30.0% |
| ! | AACCCCTACAACATATATTT+TGG | + | chr8_3:12280287-12280306 | None:intergenic | 30.0% |
| TATACATACCTTGTTCAGTT+TGG | + | chr8_3:12278933-12278952 | None:intergenic | 30.0% | |
| GTACAAAGAAATAAATGCAG+AGG | + | chr8_3:12279004-12279023 | None:intergenic | 30.0% | |
| AAAATGAAAGCTAGGTTTCT+CGG | + | chr8_3:12279261-12279280 | None:intergenic | 30.0% | |
| AAAGACTCAAAATGAAAGCT+AGG | + | chr8_3:12279269-12279288 | None:intergenic | 30.0% | |
| CGAAGATGTACAATTATACA+AGG | - | chr8_3:12279430-12279449 | Msa1277140:CDS | 30.0% | |
| GGATATATGCAAGGATTATA+AGG | - | chr8_3:12279589-12279608 | Msa1277140:CDS | 30.0% | |
| ATGCAAGGATTATAAGGAAA+CGG | - | chr8_3:12279595-12279614 | Msa1277140:CDS | 30.0% | |
| TGTAAATTTATGCATGATCG+AGG | - | chr8_3:12279641-12279660 | Msa1277140:CDS | 30.0% | |
| TAGTTTGAATGATGAAGATG+AGG | - | chr8_3:12279766-12279785 | Msa1277140:CDS | 30.0% | |
| TGGATGAGTTTATTTATCCT+CGG | + | chr8_3:12280103-12280122 | None:intergenic | 30.0% | |
| !!! | CAATGACTATTTTTGCTTCT+TGG | - | chr8_3:12280130-12280149 | Msa1277140:CDS | 30.0% |
| AATGGGAAAACAAAATAGAG+GGG | + | chr8_3:12280168-12280187 | None:intergenic | 30.0% | |
| !!! | CCCATTTTAACTGTGTTAAA+TGG | - | chr8_3:12280182-12280201 | Msa1277140:intron | 30.0% |
| CATCCCAAAATATATGTTGT+AGG | - | chr8_3:12280280-12280299 | Msa1277140:intron | 30.0% | |
| TCCCAAAATATATGTTGTAG+GGG | - | chr8_3:12280282-12280301 | Msa1277140:intron | 30.0% | |
| ! | ACCCCTACAACATATATTTT+GGG | + | chr8_3:12280286-12280305 | None:intergenic | 30.0% |
| ! | AACCCCTACAACATATATTT+TGG | + | chr8_3:12280287-12280306 | None:intergenic | 30.0% |
| AATTACACAGATCATAAGGC+TGG | - | chr8_3:12279461-12279480 | Msa1277140:CDS | 35.0% | |
| GCAAACAATTGCTAGTGAAA+AGG | - | chr8_3:12279496-12279515 | Msa1277140:CDS | 35.0% | |
| AGCAAGATTTGATTATCAGC+CGG | - | chr8_3:12279568-12279587 | Msa1277140:CDS | 35.0% | |
| TGCAAGGATTATAAGGAAAC+GGG | - | chr8_3:12279596-12279615 | Msa1277140:CDS | 35.0% | |
| !! | TATAAGGAAACGGGTTATTG+TGG | - | chr8_3:12279605-12279624 | Msa1277140:CDS | 35.0% |
| !! | ATAAGGAAACGGGTTATTGT+GGG | - | chr8_3:12279606-12279625 | Msa1277140:CDS | 35.0% |
| CTACAAATGAAACACGCAAA+TGG | + | chr8_3:12279809-12279828 | None:intergenic | 35.0% | |
| CATTTGTAGAAACCCATTTG+TGG | - | chr8_3:12279820-12279839 | Msa1277140:CDS | 35.0% | |
| ACATTAAAAATGCCAAGCGT+AGG | + | chr8_3:12280054-12280073 | None:intergenic | 35.0% | |
| ! | TACGCTTGGCATTTTTAATG+TGG | - | chr8_3:12280053-12280072 | Msa1277140:CDS | 35.0% |
| TCATGAGATACGAAAGAAGA+TGG | - | chr8_3:12280077-12280096 | Msa1277140:CDS | 35.0% | |
| !!! | TGACTATTTTTGCTTCTTGG+AGG | - | chr8_3:12280133-12280152 | Msa1277140:CDS | 35.0% |
| ATGGGAAAACAAAATAGAGG+GGG | + | chr8_3:12280167-12280186 | None:intergenic | 35.0% | |
| TGTGTTAAATGGAGATGCTA+TGG | - | chr8_3:12280193-12280212 | Msa1277140:intron | 35.0% | |
| AATTACACAGATCATAAGGC+TGG | - | chr8_3:12279461-12279480 | Msa1277140:CDS | 35.0% | |
| GCAAACAATTGCTAGTGAAA+AGG | - | chr8_3:12279496-12279515 | Msa1277140:CDS | 35.0% | |
| AGCAAGATTTGATTATCAGC+CGG | - | chr8_3:12279568-12279587 | Msa1277140:CDS | 35.0% | |
| TGCAAGGATTATAAGGAAAC+GGG | - | chr8_3:12279596-12279615 | Msa1277140:CDS | 35.0% | |
| !! | TATAAGGAAACGGGTTATTG+TGG | - | chr8_3:12279605-12279624 | Msa1277140:CDS | 35.0% |
| !! | ATAAGGAAACGGGTTATTGT+GGG | - | chr8_3:12279606-12279625 | Msa1277140:CDS | 35.0% |
| CTACAAATGAAACACGCAAA+TGG | + | chr8_3:12279809-12279828 | None:intergenic | 35.0% | |
| CATTTGTAGAAACCCATTTG+TGG | - | chr8_3:12279820-12279839 | Msa1277140:CDS | 35.0% | |
| ACATTAAAAATGCCAAGCGT+AGG | + | chr8_3:12280054-12280073 | None:intergenic | 35.0% | |
| ! | TACGCTTGGCATTTTTAATG+TGG | - | chr8_3:12280053-12280072 | Msa1277140:CDS | 35.0% |
| TCATGAGATACGAAAGAAGA+TGG | - | chr8_3:12280077-12280096 | Msa1277140:CDS | 35.0% | |
| !!! | TGACTATTTTTGCTTCTTGG+AGG | - | chr8_3:12280133-12280152 | Msa1277140:CDS | 35.0% |
| ATGGGAAAACAAAATAGAGG+GGG | + | chr8_3:12280167-12280186 | None:intergenic | 35.0% | |
| TGTGTTAAATGGAGATGCTA+TGG | - | chr8_3:12280193-12280212 | Msa1277140:intron | 35.0% | |
| ! | TGTTCAGTTTGGTGATTTGC+AGG | + | chr8_3:12278922-12278941 | None:intergenic | 40.0% |
| GCAAATCACCAAACTGAACA+AGG | - | chr8_3:12278922-12278941 | Msa1277140:three_prime_UTR | 40.0% | |
| AGCACTATTGAGAATGAGGA+TGG | - | chr8_3:12279116-12279135 | Msa1277140:exon | 40.0% | |
| TTCTTCGTTCGGTTTAGCAT+AGG | + | chr8_3:12279237-12279256 | None:intergenic | 40.0% | |
| CTTGCTTAAGAGCTCTTTCA+CGG | + | chr8_3:12279376-12279395 | None:intergenic | 40.0% | |
| ACAATTGCTAGTGAAAAGGC+TGG | - | chr8_3:12279500-12279519 | Msa1277140:CDS | 40.0% | |
| TTATCAGCCGGATATATGCA+AGG | - | chr8_3:12279580-12279599 | Msa1277140:CDS | 40.0% | |
| ATCGAGGTGATTACAAACCT+GGG | - | chr8_3:12279657-12279676 | Msa1277140:CDS | 40.0% | |
| TTGAGACAGGATCCACAAAT+GGG | + | chr8_3:12279835-12279854 | None:intergenic | 40.0% | |
| ! | TGTTCAGTTTGGTGATTTGC+AGG | + | chr8_3:12278922-12278941 | None:intergenic | 40.0% |
| GCAAATCACCAAACTGAACA+AGG | - | chr8_3:12278922-12278941 | Msa1277140:three_prime_UTR | 40.0% | |
| AGCACTATTGAGAATGAGGA+TGG | - | chr8_3:12279116-12279135 | Msa1277140:exon | 40.0% | |
| TTCTTCGTTCGGTTTAGCAT+AGG | + | chr8_3:12279237-12279256 | None:intergenic | 40.0% | |
| CTTGCTTAAGAGCTCTTTCA+CGG | + | chr8_3:12279376-12279395 | None:intergenic | 40.0% | |
| ACAATTGCTAGTGAAAAGGC+TGG | - | chr8_3:12279500-12279519 | Msa1277140:CDS | 40.0% | |
| TTATCAGCCGGATATATGCA+AGG | - | chr8_3:12279580-12279599 | Msa1277140:CDS | 40.0% | |
| ATCGAGGTGATTACAAACCT+GGG | - | chr8_3:12279657-12279676 | Msa1277140:CDS | 40.0% | |
| TTGAGACAGGATCCACAAAT+GGG | + | chr8_3:12279835-12279854 | None:intergenic | 40.0% | |
| ! | GCGAAGCACTATTGAGAATG+AGG | - | chr8_3:12279112-12279131 | Msa1277140:exon | 45.0% |
| ! | ATAGGCAGAGGTCTTTGAAG+AGG | + | chr8_3:12279219-12279238 | None:intergenic | 45.0% |
| GGTTTCTCGGATTCTTCGTT+CGG | + | chr8_3:12279248-12279267 | None:intergenic | 45.0% | |
| TAGCAAAGCAACCGCAACTT+TGG | - | chr8_3:12279313-12279332 | Msa1277140:intron | 45.0% | |
| AGTCTCAGTCTCCAAAGTTG+CGG | + | chr8_3:12279327-12279346 | None:intergenic | 45.0% | |
| CTTAAGAGCTCTTTCACGGA+TGG | + | chr8_3:12279372-12279391 | None:intergenic | 45.0% | |
| ATTGCTAGTGAAAAGGCTGG+TGG | - | chr8_3:12279503-12279522 | Msa1277140:CDS | 45.0% | |
| TTGCTAGTGAAAAGGCTGGT+GGG | - | chr8_3:12279504-12279523 | Msa1277140:CDS | 45.0% | |
| !! | GAAACGGGTTATTGTGGGTA+TGG | - | chr8_3:12279611-12279630 | Msa1277140:CDS | 45.0% |
| GATCGAGGTGATTACAAACC+TGG | - | chr8_3:12279656-12279675 | Msa1277140:CDS | 45.0% | |
| ATGAAGCTGAGAAAGCTAGG+AGG | - | chr8_3:12279702-12279721 | Msa1277140:CDS | 45.0% | |
| GAAAGCTAGGAGGATGAGAT+TGG | - | chr8_3:12279712-12279731 | Msa1277140:CDS | 45.0% | |
| TGCAAGTGAAGATGCAGAAG+AGG | - | chr8_3:12279736-12279755 | Msa1277140:CDS | 45.0% | |
| AAGTGAAGATGCAGAAGAGG+AGG | - | chr8_3:12279739-12279758 | Msa1277140:CDS | 45.0% | |
| AGTGAAGATGCAGAAGAGGA+GGG | - | chr8_3:12279740-12279759 | Msa1277140:CDS | 45.0% | |
| GTTGAGACAGGATCCACAAA+TGG | + | chr8_3:12279836-12279855 | None:intergenic | 45.0% | |
| ACAGAAGTAGTGCTTGCACT+TGG | + | chr8_3:12279858-12279877 | None:intergenic | 45.0% | |
| ! | CTGTGAGCATTGTGCATTGA+AGG | - | chr8_3:12279874-12279893 | Msa1277140:CDS | 45.0% |
| TAAAAATGCCAAGCGTAGGC+TGG | + | chr8_3:12280050-12280069 | None:intergenic | 45.0% | |
| ! | GCGAAGCACTATTGAGAATG+AGG | - | chr8_3:12279112-12279131 | Msa1277140:exon | 45.0% |
| ! | ATAGGCAGAGGTCTTTGAAG+AGG | + | chr8_3:12279219-12279238 | None:intergenic | 45.0% |
| GGTTTCTCGGATTCTTCGTT+CGG | + | chr8_3:12279248-12279267 | None:intergenic | 45.0% | |
| TAGCAAAGCAACCGCAACTT+TGG | - | chr8_3:12279313-12279332 | Msa1277140:intron | 45.0% | |
| AGTCTCAGTCTCCAAAGTTG+CGG | + | chr8_3:12279327-12279346 | None:intergenic | 45.0% | |
| CTTAAGAGCTCTTTCACGGA+TGG | + | chr8_3:12279372-12279391 | None:intergenic | 45.0% | |
| ATTGCTAGTGAAAAGGCTGG+TGG | - | chr8_3:12279503-12279522 | Msa1277140:CDS | 45.0% | |
| TTGCTAGTGAAAAGGCTGGT+GGG | - | chr8_3:12279504-12279523 | Msa1277140:CDS | 45.0% | |
| !! | GAAACGGGTTATTGTGGGTA+TGG | - | chr8_3:12279611-12279630 | Msa1277140:CDS | 45.0% |
| GATCGAGGTGATTACAAACC+TGG | - | chr8_3:12279656-12279675 | Msa1277140:CDS | 45.0% | |
| ATGAAGCTGAGAAAGCTAGG+AGG | - | chr8_3:12279702-12279721 | Msa1277140:CDS | 45.0% | |
| GAAAGCTAGGAGGATGAGAT+TGG | - | chr8_3:12279712-12279731 | Msa1277140:CDS | 45.0% | |
| TGCAAGTGAAGATGCAGAAG+AGG | - | chr8_3:12279736-12279755 | Msa1277140:CDS | 45.0% | |
| AAGTGAAGATGCAGAAGAGG+AGG | - | chr8_3:12279739-12279758 | Msa1277140:CDS | 45.0% | |
| AGTGAAGATGCAGAAGAGGA+GGG | - | chr8_3:12279740-12279759 | Msa1277140:CDS | 45.0% | |
| GTTGAGACAGGATCCACAAA+TGG | + | chr8_3:12279836-12279855 | None:intergenic | 45.0% | |
| ACAGAAGTAGTGCTTGCACT+TGG | + | chr8_3:12279858-12279877 | None:intergenic | 45.0% | |
| ! | CTGTGAGCATTGTGCATTGA+AGG | - | chr8_3:12279874-12279893 | Msa1277140:CDS | 45.0% |
| TAAAAATGCCAAGCGTAGGC+TGG | + | chr8_3:12280050-12280069 | None:intergenic | 45.0% | |
| TGAGGATGGCTCGAACAATG+AGG | - | chr8_3:12279130-12279149 | Msa1277140:CDS | 50.0% | |
| GTTCGGTTTAGCATAGGCAG+AGG | + | chr8_3:12279231-12279250 | None:intergenic | 50.0% | |
| CAAGCGACAGAGAGTCTCAA+GGG | - | chr8_3:12279392-12279411 | Msa1277140:CDS | 50.0% | |
| GAGGTGATTACAAACCTGGG+TGG | - | chr8_3:12279660-12279679 | Msa1277140:CDS | 50.0% | |
| TTACAAACCTGGGTGGCAGA+TGG | - | chr8_3:12279667-12279686 | Msa1277140:CDS | 50.0% | |
| GTGGCAGATGGAGAAGGAAT+GGG | - | chr8_3:12279679-12279698 | Msa1277140:CDS | 50.0% | |
| GGGATGAAGCTGAGAAAGCT+AGG | - | chr8_3:12279699-12279718 | Msa1277140:CDS | 50.0% | |
| TGCTTGCACTTGGTTGAGAC+AGG | + | chr8_3:12279848-12279867 | None:intergenic | 50.0% | |
| GATACGAAAGAAGATGGCCG+AGG | - | chr8_3:12280083-12280102 | Msa1277140:CDS | 50.0% | |
| TGAGGATGGCTCGAACAATG+AGG | - | chr8_3:12279130-12279149 | Msa1277140:CDS | 50.0% | |
| GTTCGGTTTAGCATAGGCAG+AGG | + | chr8_3:12279231-12279250 | None:intergenic | 50.0% | |
| CAAGCGACAGAGAGTCTCAA+GGG | - | chr8_3:12279392-12279411 | Msa1277140:CDS | 50.0% | |
| GAGGTGATTACAAACCTGGG+TGG | - | chr8_3:12279660-12279679 | Msa1277140:CDS | 50.0% | |
| TTACAAACCTGGGTGGCAGA+TGG | - | chr8_3:12279667-12279686 | Msa1277140:CDS | 50.0% | |
| GTGGCAGATGGAGAAGGAAT+GGG | - | chr8_3:12279679-12279698 | Msa1277140:CDS | 50.0% | |
| GGGATGAAGCTGAGAAAGCT+AGG | - | chr8_3:12279699-12279718 | Msa1277140:CDS | 50.0% | |
| TGCTTGCACTTGGTTGAGAC+AGG | + | chr8_3:12279848-12279867 | None:intergenic | 50.0% | |
| GATACGAAAGAAGATGGCCG+AGG | - | chr8_3:12280083-12280102 | Msa1277140:CDS | 50.0% | |
| ! | AGAGGTCTTTGAAGAGGCGG+TGG | + | chr8_3:12279213-12279232 | None:intergenic | 55.0% |
| ! | GGCAGAGGTCTTTGAAGAGG+CGG | + | chr8_3:12279216-12279235 | None:intergenic | 55.0% |
| AGCTCTTTCACGGATGGCAC+GGG | + | chr8_3:12279366-12279385 | None:intergenic | 55.0% | |
| GAGCTCTTTCACGGATGGCA+CGG | + | chr8_3:12279367-12279386 | None:intergenic | 55.0% | |
| GCAAGCGACAGAGAGTCTCA+AGG | - | chr8_3:12279391-12279410 | Msa1277140:CDS | 55.0% | |
| ! | GAAAAGGCTGGTGGGTCACA+CGG | - | chr8_3:12279512-12279531 | Msa1277140:CDS | 55.0% |
| ATGTGAGCTGAAGCCCTGAG+AGG | + | chr8_3:12279539-12279558 | None:intergenic | 55.0% | |
| GGTGGCAGATGGAGAAGGAA+TGG | - | chr8_3:12279678-12279697 | Msa1277140:CDS | 55.0% | |
| ! | AGAGGTCTTTGAAGAGGCGG+TGG | + | chr8_3:12279213-12279232 | None:intergenic | 55.0% |
| ! | GGCAGAGGTCTTTGAAGAGG+CGG | + | chr8_3:12279216-12279235 | None:intergenic | 55.0% |
| AGCTCTTTCACGGATGGCAC+GGG | + | chr8_3:12279366-12279385 | None:intergenic | 55.0% | |
| GAGCTCTTTCACGGATGGCA+CGG | + | chr8_3:12279367-12279386 | None:intergenic | 55.0% | |
| GCAAGCGACAGAGAGTCTCA+AGG | - | chr8_3:12279391-12279410 | Msa1277140:CDS | 55.0% | |
| ! | GAAAAGGCTGGTGGGTCACA+CGG | - | chr8_3:12279512-12279531 | Msa1277140:CDS | 55.0% |
| ATGTGAGCTGAAGCCCTGAG+AGG | + | chr8_3:12279539-12279558 | None:intergenic | 55.0% | |
| GGTGGCAGATGGAGAAGGAA+TGG | - | chr8_3:12279678-12279697 | Msa1277140:CDS | 55.0% | |
| TGGGTCACACGGTCCTCTCA+GGG | - | chr8_3:12279523-12279542 | Msa1277140:CDS | 60.0% | |
| ACCTGGGTGGCAGATGGAGA+AGG | - | chr8_3:12279673-12279692 | Msa1277140:CDS | 60.0% | |
| TCCTTCTCCATCTGCCACCC+AGG | + | chr8_3:12279677-12279696 | None:intergenic | 60.0% | |
| GTCTGCAACCAGCCTACGCT+TGG | - | chr8_3:12280039-12280058 | Msa1277140:CDS | 60.0% | |
| TGGGTCACACGGTCCTCTCA+GGG | - | chr8_3:12279523-12279542 | Msa1277140:CDS | 60.0% | |
| ACCTGGGTGGCAGATGGAGA+AGG | - | chr8_3:12279673-12279692 | Msa1277140:CDS | 60.0% | |
| TCCTTCTCCATCTGCCACCC+AGG | + | chr8_3:12279677-12279696 | None:intergenic | 60.0% | |
| GTCTGCAACCAGCCTACGCT+TGG | - | chr8_3:12280039-12280058 | Msa1277140:CDS | 60.0% | |
| GTGGGTCACACGGTCCTCTC+AGG | - | chr8_3:12279522-12279541 | Msa1277140:CDS | 65.0% | |
| GTGGGTCACACGGTCCTCTC+AGG | - | chr8_3:12279522-12279541 | Msa1277140:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 12278895 | 12280336 | 12278895 | ID=Msa1277140;Name=Msa1277140 |
| chr8_3 | mRNA | 12278895 | 12280336 | 12278895 | ID=Msa1277140-mRNA-1;Parent=Msa1277140;Name=Msa1277140-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.5|0.33|1|1|1|3|223|326 |
| chr8_3 | exon | 12278895 | 12279219 | 12278895 | ID=Msa1277140-mRNA-1:exon:4981;Parent=Msa1277140-mRNA-1 |
| chr8_3 | exon | 12279336 | 12280165 | 12279336 | ID=Msa1277140-mRNA-1:exon:4980;Parent=Msa1277140-mRNA-1 |
| chr8_3 | exon | 12280288 | 12280336 | 12280288 | ID=Msa1277140-mRNA-1:exon:4979;Parent=Msa1277140-mRNA-1 |
| chr8_3 | CDS | 12280288 | 12280336 | 12280288 | ID=Msa1277140-mRNA-1:cds;Parent=Msa1277140-mRNA-1 |
| chr8_3 | CDS | 12279336 | 12280165 | 12279336 | ID=Msa1277140-mRNA-1:cds;Parent=Msa1277140-mRNA-1 |
| chr8_3 | CDS | 12279118 | 12279219 | 12279118 | ID=Msa1277140-mRNA-1:cds;Parent=Msa1277140-mRNA-1 |
| chr8_3 | three_prime_UTR | 12278895 | 12279117 | 12278895 | ID=Msa1277140-mRNA-1:three_prime_utr;Parent=Msa1277140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
