AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1278450

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1278450 MtrunA17_Chr8g0348311 92.920 339 20 3 1 336 1 338 6.67e-179 498
Msa1278450 MtrunA17_Chr7g0248691 54.839 341 115 8 1 331 1 312 1.27e-104 310
Msa1278450 MtrunA17_Chr2g0293481 37.217 309 131 10 71 324 159 459 9.88e-48 167
Msa1278450 MtrunA17_Chr1g0202461 68.421 114 33 2 130 242 237 348 1.94e-46 162
Msa1278450 MtrunA17_Chr8g0387501 42.661 218 105 7 33 245 14 216 2.22e-40 142
Msa1278450 MtrunA17_Chr7g0270051 48.905 137 52 5 133 257 24 154 2.92e-33 124
Msa1278450 MtrunA17_Chr2g0284321 58.763 97 33 2 127 217 4 99 1.01e-32 121
Msa1278450 MtrunA17_Chr8g0379461 54.639 97 31 3 134 218 46 141 1.24e-28 110
Msa1278450 MtrunA17_Chr5g0401821 60.241 83 28 1 133 210 174 256 3.64e-28 110
Msa1278450 MtrunA17_Chr2g0319961 56.818 88 32 1 132 213 53 140 6.18e-28 109
Msa1278450 MtrunA17_Chr4g0071521 61.446 83 27 1 133 210 220 302 2.45e-27 109
Msa1278450 MtrunA17_Chr2g0289181 51.648 91 41 2 143 232 4 92 7.21e-27 105
Msa1278450 MtrunA17_Chr1g0147881 58.537 82 29 1 134 210 238 319 1.02e-26 108
Msa1278450 MtrunA17_Chr4g0053281 59.756 82 28 2 134 210 242 323 1.15e-25 105
Msa1278450 MtrunA17_Chr1g0184691 68.421 57 18 0 154 210 294 350 4.54e-23 98.2
Msa1278450 MtrunA17_Chr7g0228941 60.000 60 24 0 151 210 50 109 3.24e-22 90.5
Msa1278450 MtrunA17_Chr3g0139021 46.154 91 43 2 134 218 290 380 3.54e-21 93.6
Msa1278450 MtrunA17_Chr7g0218081 40.741 108 62 2 130 236 386 492 6.75e-20 90.5
Msa1278450 MtrunA17_Chr7g0218081 44.286 70 35 3 149 216 224 291 5.79e-11 63.5
Msa1278450 MtrunA17_Chr1g0194481 52.174 69 31 2 154 221 159 226 1.61e-19 87.8
Msa1278450 MtrunA17_Chr4g0051881 55.072 69 27 2 154 222 179 243 4.34e-19 86.7
Msa1278450 MtrunA17_Chr7g0270831 50.685 73 36 0 151 223 214 286 1.17e-18 86.3
Msa1278450 MtrunA17_Chr5g0443131 56.667 60 25 1 154 213 158 216 2.34e-18 84.3
Msa1278450 MtrunA17_Chr4g0051181 43.182 88 47 1 127 214 220 304 3.22e-18 85.5
Msa1278450 MtrunA17_Chr4g0075201 55.556 63 28 0 151 213 265 327 6.13e-18 84.7
Msa1278450 MtrunA17_Chr5g0418191 35.000 160 76 6 129 268 279 430 7.31e-18 84.0
Msa1278450 MtrunA17_Chr5g0418191 30.332 211 121 11 92 294 99 291 6.01e-12 66.2
Msa1278450 MtrunA17_Chr7g0238921 34.545 165 96 4 137 292 106 267 9.70e-18 82.4
Msa1278450 MtrunA17_Chr7g0270191 55.000 60 26 1 154 213 146 204 1.01e-17 82.4
Msa1278450 MtrunA17_Chr3g0126391 38.333 120 67 3 154 271 134 248 1.07e-17 82.8
Msa1278450 MtrunA17_Chr2g0288871 52.381 63 30 0 151 213 303 365 2.32e-17 82.8
Msa1278450 MtrunA17_Chr7g0275531 36.842 114 62 3 100 209 69 176 3.60e-17 81.3
Msa1278450 MtrunA17_Chr3g0099641 46.575 73 39 0 151 223 249 321 3.87e-17 82.0
Msa1278450 MtrunA17_Chr7g0263531 54.412 68 29 2 146 213 355 420 5.42e-17 81.6
Msa1278450 MtrunA17_Chr7g0263531 44.737 76 40 2 148 223 184 257 6.33e-14 72.4
Msa1278450 MtrunA17_Chr4g0001361 36.538 104 53 1 151 241 160 263 7.22e-17 80.1
Msa1278450 MtrunA17_Chr4g0042831 52.381 63 29 1 151 213 276 337 9.93e-17 80.5
Msa1278450 MtrunA17_Chr4g0042831 37.500 112 50 3 146 257 138 229 3.01e-14 73.2
Msa1278450 MtrunA17_Chr3g0101131 40.594 101 46 3 131 218 380 479 1.08e-16 80.9
Msa1278450 MtrunA17_Chr3g0101131 40.789 76 43 2 146 221 236 309 4.13e-11 63.9
Msa1278450 MtrunA17_Chr2g0302391 39.623 106 59 1 118 223 181 281 1.29e-16 80.5
Msa1278450 MtrunA17_Chr5g0418781 56.140 57 24 1 154 210 125 180 1.47e-16 78.6
Msa1278450 MtrunA17_Chr2g0294231 51.667 60 28 1 154 213 204 262 1.88e-16 79.7
Msa1278450 MtrunA17_Chr5g0445311 38.462 117 62 4 154 264 365 477 2.11e-16 80.1
Msa1278450 MtrunA17_Chr4g0025051 46.667 75 40 0 149 223 331 405 2.29e-16 80.1
Msa1278450 MtrunA17_Chr7g0216891 40.659 91 51 1 133 223 202 289 2.39e-16 80.1
Msa1278450 MtrunA17_Chr2g0333851 37.255 102 61 2 151 250 167 267 2.90e-16 78.2
Msa1278450 MtrunA17_Chr2g0322391 50.794 63 31 0 151 213 347 409 4.08e-16 79.3
Msa1278450 MtrunA17_Chr8g0387981 41.860 86 42 2 132 209 105 190 4.74e-16 78.2
Msa1278450 MtrunA17_Chr4g0074001 39.252 107 58 3 113 217 323 424 7.89e-16 78.2
Msa1278450 MtrunA17_Chr1g0150801 51.613 62 29 1 150 211 99 159 8.34e-16 73.9
Msa1278450 MtrunA17_Chr4g0025061 42.353 85 45 2 142 223 347 430 1.06e-15 78.2
Msa1278450 MtrunA17_Chr7g0249311 39.560 91 50 3 129 218 370 456 1.08e-15 78.2
Msa1278450 MtrunA17_Chr7g0249311 42.667 75 41 2 139 213 165 237 1.33e-12 68.6
Msa1278450 MtrunA17_Chr4g0068541 47.541 61 31 1 154 214 209 268 2.42e-15 76.6
Msa1278450 MtrunA17_Chr6g0485431 49.296 71 33 3 144 213 146 214 4.71e-15 75.1
Msa1278450 MtrunA17_Chr7g0243891 42.222 90 42 2 154 234 375 463 5.15e-15 75.9
Msa1278450 MtrunA17_Chr7g0243891 45.588 68 35 2 146 213 209 274 2.83e-12 67.4
Msa1278450 MtrunA17_Chr4g0060271 52.459 61 29 0 153 213 255 315 5.30e-15 75.9
Msa1278450 MtrunA17_Chr3g0079691 39.604 101 45 3 133 218 460 559 6.02e-15 75.9
Msa1278450 MtrunA17_Chr3g0079691 49.315 73 34 3 152 223 279 349 4.40e-12 67.0
Msa1278450 MtrunA17_Chr7g0249301 43.529 85 43 3 135 216 272 354 7.61e-15 74.7
Msa1278450 MtrunA17_Chr7g0249301 42.105 76 42 2 139 214 48 121 3.63e-13 69.7
Msa1278450 MtrunA17_Chr3g0106491 47.436 78 39 2 154 231 366 441 8.83e-15 75.1
Msa1278450 MtrunA17_Chr4g0004911 50.794 63 30 1 154 216 337 398 9.35e-15 75.1
Msa1278450 MtrunA17_Chr4g0004911 41.791 67 38 1 147 213 178 243 1.11e-11 65.5
Msa1278450 MtrunA17_Chr3g0129321 43.939 66 36 1 150 215 115 179 1.06e-14 72.0
Msa1278450 MtrunA17_Chr5g0447701 47.826 69 35 1 151 219 250 317 1.44e-14 73.9
Msa1278450 MtrunA17_Chr7g0224801 45.902 61 32 1 151 211 91 150 2.07e-14 70.5
Msa1278450 MtrunA17_Chr8g0383251 46.875 64 33 1 150 213 105 167 2.16e-14 70.5
Msa1278450 MtrunA17_Chr8g0347251 33.108 148 89 4 148 285 131 278 2.28e-14 73.2
Msa1278450 MtrunA17_Chr1g0189391 43.750 96 43 5 140 225 83 177 2.36e-14 72.8
Msa1278450 MtrunA17_Chr1g0150281 45.614 57 31 0 154 210 141 197 2.64e-14 72.4
Msa1278450 MtrunA17_Chr8g0383351 50.877 57 27 1 154 210 161 216 5.48e-14 70.5
Msa1278450 MtrunA17_Chr1g0150271 46.032 63 34 0 151 213 99 161 5.86e-14 70.9
Msa1278450 MtrunA17_Chr3g0136961 45.614 57 31 0 154 210 139 195 6.14e-14 71.2
Msa1278450 MtrunA17_Chr3g0129361 50.877 57 27 1 154 210 145 200 7.85e-14 69.7
Msa1278450 MtrunA17_Chr8g0335811 38.947 95 54 4 119 210 117 210 1.43e-13 69.3
Msa1278450 MtrunA17_Chr7g0244981 44.872 78 39 2 134 209 105 180 1.59e-13 70.1
Msa1278450 MtrunA17_Chr5g0432161 49.231 65 32 1 154 218 422 485 1.72e-13 71.2
Msa1278450 MtrunA17_Chr3g0128671 39.286 84 46 2 134 215 111 191 1.26e-12 67.8
Msa1278450 MtrunA17_Chr4g0024391 26.875 160 104 3 73 223 144 299 4.24e-12 67.0
Msa1278450 MtrunA17_Chr8g0386241 35.526 76 47 2 138 212 87 161 4.39e-12 63.9
Msa1278450 MtrunA17_Chr8g0334541 42.308 78 41 2 134 209 86 161 5.60e-12 65.5
Msa1278450 MtrunA17_Chr1g0188941 45.902 61 32 1 154 214 52 111 8.36e-12 61.6
Msa1278450 MtrunA17_Chr7g0244971 39.744 78 43 2 134 209 106 181 1.48e-11 64.3
Msa1278450 MtrunA17_Chr5g0428351 35.922 103 47 3 120 209 145 241 3.26e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1278450 AT4G01250.1 47.205 322 122 9 1 315 1 281 1.56e-78 242
Msa1278450 AT5G52830.1 57.143 154 51 4 132 282 143 284 3.43e-50 171
Msa1278450 AT4G23550.1 44.304 237 92 9 6 231 11 218 2.71e-43 152
Msa1278450 AT1G30650.1 45.581 215 85 7 134 322 188 396 3.29e-42 152
Msa1278450 AT2G34830.1 43.961 207 78 6 134 306 186 388 4.97e-42 151
Msa1278450 AT2G34830.2 43.961 207 78 6 134 306 195 397 6.35e-42 151
Msa1278450 AT5G45050.2 62.366 93 32 1 132 221 1128 1220 5.56e-34 132
Msa1278450 AT5G45050.1 62.366 93 32 1 132 221 1156 1248 5.97e-34 132
Msa1278450 AT5G45050.4 62.366 93 32 1 132 221 1017 1109 6.89e-34 132
Msa1278450 AT1G29280.1 51.282 117 40 3 120 225 31 141 9.15e-33 122
Msa1278450 AT3G58710.1 51.304 115 38 3 130 226 38 152 2.51e-30 116
Msa1278450 AT3G58710.2 52.174 115 36 4 130 226 38 151 1.47e-29 114
Msa1278450 AT2G23320.1 42.657 143 75 3 73 210 157 297 7.95e-27 108
Msa1278450 AT4G24240.1 57.831 83 30 1 133 210 256 338 7.24e-25 103
Msa1278450 AT2G30590.1 55.952 84 32 1 133 211 288 371 7.38e-25 103
Msa1278450 AT4G31550.2 56.098 82 31 1 134 210 221 302 7.41e-25 103
Msa1278450 AT4G31550.1 56.098 82 31 1 134 210 222 303 2.70e-24 101
Msa1278450 AT5G28650.1 56.627 83 31 1 133 210 237 319 7.31e-24 100
Msa1278450 AT3G04670.1 56.627 83 31 1 133 210 237 319 9.11e-24 100
Msa1278450 AT5G45260.1 48.485 99 46 3 130 224 1184 1281 6.00e-23 100
Msa1278450 AT2G24570.1 54.878 82 32 1 134 210 219 300 1.11e-22 97.1
Msa1278450 AT1G29860.1 55.072 69 29 2 154 221 137 204 9.68e-19 85.1
Msa1278450 AT5G46350.1 51.389 72 32 2 154 223 184 254 1.09e-18 85.9
Msa1278450 AT4G18170.1 56.452 62 26 1 154 215 173 233 1.38e-18 85.5
Msa1278450 AT4G04450.2 39.516 124 67 3 122 242 172 290 1.47e-18 86.7
Msa1278450 AT2G04880.2 52.703 74 29 2 151 219 281 353 2.38e-18 85.9
Msa1278450 AT2G04880.2 45.333 75 34 3 149 223 107 174 6.48e-12 66.6
Msa1278450 AT2G04880.1 52.703 74 29 2 151 219 305 377 2.59e-18 85.9
Msa1278450 AT2G04880.1 45.333 75 34 3 149 223 107 174 6.45e-12 66.6
Msa1278450 AT4G04450.1 44.211 95 50 1 151 242 290 384 2.75e-18 86.3
Msa1278450 AT3G62340.1 51.807 83 34 3 136 213 96 177 3.08e-18 84.0
Msa1278450 AT5G49520.1 56.667 60 25 1 154 213 222 280 3.19e-18 85.1
Msa1278450 AT1G62300.1 55.556 63 28 0 151 213 310 372 5.59e-18 85.1
Msa1278450 AT4G22070.4 55.556 63 28 0 151 213 295 357 7.41e-18 84.7
Msa1278450 AT4G22070.3 55.556 63 28 0 151 213 295 357 7.41e-18 84.7
Msa1278450 AT4G22070.2 55.556 63 28 0 151 213 295 357 7.41e-18 84.7
Msa1278450 AT4G22070.1 55.556 63 28 0 151 213 295 357 7.41e-18 84.7
Msa1278450 AT1G68150.1 47.368 76 40 0 153 228 235 310 1.68e-17 82.8
Msa1278450 AT5G15130.2 43.333 90 48 1 134 223 169 255 5.19e-17 82.0
Msa1278450 AT5G15130.1 43.333 90 48 1 134 223 211 297 5.24e-17 82.4
Msa1278450 AT1G13960.2 52.381 63 29 1 151 213 254 315 9.13e-17 80.9
Msa1278450 AT1G13960.2 40.789 76 43 2 138 213 61 134 1.09e-12 68.6
Msa1278450 AT1G69310.4 56.140 57 24 1 154 210 148 203 9.34e-17 79.7
Msa1278450 AT1G69310.2 56.140 57 24 1 154 210 148 203 9.34e-17 79.7
Msa1278450 AT1G69310.1 56.140 57 24 1 154 210 148 203 9.34e-17 79.7
Msa1278450 AT2G03340.1 50.000 68 33 1 151 218 413 479 1.55e-16 80.9
Msa1278450 AT2G03340.1 31.646 158 96 3 148 295 245 400 3.68e-14 73.6
Msa1278450 AT1G66600.1 30.493 223 115 9 85 288 31 232 1.77e-16 78.2
Msa1278450 AT2G25000.2 50.000 60 30 0 154 213 104 163 1.80e-16 77.8
Msa1278450 AT2G25000.4 50.000 60 30 0 154 213 104 163 1.80e-16 77.8
Msa1278450 AT1G13960.1 52.381 63 29 1 151 213 407 468 1.90e-16 80.5
Msa1278450 AT1G13960.1 40.789 76 43 2 138 213 214 287 8.18e-13 69.7
Msa1278450 AT5G26170.1 45.946 74 36 2 137 210 100 169 2.09e-16 76.3
Msa1278450 AT2G21900.1 49.180 61 30 1 154 214 110 169 2.18e-16 77.0
Msa1278450 AT4G26640.5 32.121 165 96 4 54 218 121 269 3.07e-16 79.3
Msa1278450 AT4G26640.6 32.121 165 96 4 54 218 121 269 3.07e-16 79.3
Msa1278450 AT4G26640.4 32.121 165 96 4 54 218 121 269 3.07e-16 79.3
Msa1278450 AT4G26640.3 32.121 165 96 4 54 218 121 269 3.07e-16 79.3
Msa1278450 AT2G25000.3 50.000 60 30 0 154 213 126 185 3.17e-16 77.8
Msa1278450 AT5G07100.2 51.515 66 31 1 151 216 139 203 3.66e-16 76.6
Msa1278450 AT5G07100.2 43.939 66 36 1 148 213 19 83 1.12e-11 63.9
Msa1278450 AT5G07100.4 51.515 66 31 1 151 216 139 203 3.66e-16 76.6
Msa1278450 AT5G07100.4 43.939 66 36 1 148 213 19 83 1.12e-11 63.9
Msa1278450 AT5G07100.5 51.515 66 31 1 151 216 139 203 3.66e-16 76.6
Msa1278450 AT5G07100.5 43.939 66 36 1 148 213 19 83 1.12e-11 63.9
Msa1278450 AT5G07100.3 51.515 66 31 1 151 216 139 203 3.66e-16 76.6
Msa1278450 AT5G07100.3 43.939 66 36 1 148 213 19 83 1.12e-11 63.9
Msa1278450 AT4G39410.1 41.414 99 53 3 135 229 203 300 4.05e-16 78.2
Msa1278450 AT2G25000.1 50.000 60 30 0 154 213 147 206 4.76e-16 77.4
Msa1278450 AT2G37260.1 50.000 86 33 4 132 210 323 405 4.88e-16 79.0
Msa1278450 AT2G37260.2 50.000 86 33 4 132 210 241 323 5.03e-16 78.6
Msa1278450 AT2G37260.3 50.000 86 33 4 132 210 243 325 5.26e-16 78.2
Msa1278450 AT4G01720.1 52.459 61 29 0 153 213 239 299 5.53e-16 79.0
Msa1278450 AT1G80840.1 42.254 71 41 0 154 224 147 217 6.47e-16 77.4
Msa1278450 AT2G38470.1 39.423 104 52 3 154 247 363 465 6.90e-16 79.0
Msa1278450 AT5G07100.1 51.515 66 31 1 151 216 232 296 7.10e-16 77.4
Msa1278450 AT5G07100.1 42.647 68 38 1 146 213 110 176 1.75e-11 64.7
Msa1278450 AT4G26640.1 32.121 165 96 4 54 218 225 373 8.22e-16 78.6
Msa1278450 AT4G26640.2 32.121 165 96 4 54 218 297 445 8.53e-16 78.6
Msa1278450 AT1G69810.1 48.611 72 36 1 153 223 203 274 9.43e-16 77.8
Msa1278450 AT4G26640.7 32.121 165 96 4 54 218 257 405 9.66e-16 78.6
Msa1278450 AT1G18860.1 45.000 80 41 1 134 213 223 299 1.11e-15 78.2
Msa1278450 AT2G47260.1 51.667 60 28 1 154 213 175 233 1.25e-15 77.0
Msa1278450 AT1G69810.2 48.611 72 36 1 153 223 145 216 1.44e-15 77.0
Msa1278450 AT1G80590.1 29.341 167 107 3 117 272 40 206 2.65e-15 74.7
Msa1278450 AT4G11070.2 44.706 85 39 2 133 209 83 167 2.77e-15 75.5
Msa1278450 AT4G11070.1 44.706 85 39 2 133 209 115 199 3.89e-15 75.5
Msa1278450 AT4G31800.2 46.667 60 32 0 154 213 112 171 5.33e-15 73.9
Msa1278450 AT3G01080.2 43.158 95 41 4 131 213 310 403 6.95e-15 75.9
Msa1278450 AT3G01080.2 45.205 73 38 2 149 221 201 271 4.17e-13 70.5
Msa1278450 AT4G31800.1 46.667 60 32 0 154 213 177 236 7.73e-15 74.7
Msa1278450 AT3G01080.1 43.158 95 41 4 131 213 272 365 8.45e-15 75.5
Msa1278450 AT3G01080.1 45.205 73 38 2 149 221 163 233 3.64e-13 70.5
Msa1278450 AT4G23810.1 34.146 164 84 7 123 277 123 271 8.84e-15 74.7
Msa1278450 AT4G26440.1 47.619 84 38 3 154 232 373 455 9.10e-15 75.5
Msa1278450 AT4G26440.1 45.205 73 36 3 152 222 177 247 2.39e-12 68.2
Msa1278450 AT4G30935.1 46.377 69 34 2 151 217 329 396 1.10e-14 75.1
Msa1278450 AT2G40740.1 43.617 94 44 3 125 209 138 231 1.26e-14 73.6
Msa1278450 AT2G40740.3 43.617 94 44 3 125 209 147 240 1.56e-14 73.6
Msa1278450 AT2G46400.1 43.529 85 39 2 134 209 78 162 2.73e-14 72.8
Msa1278450 AT5G56270.1 50.794 63 30 1 154 216 488 549 2.82e-14 74.3
Msa1278450 AT5G56270.1 44.118 68 34 3 154 219 274 339 9.56e-11 63.5
Msa1278450 AT1G66560.1 34.667 150 88 4 85 226 31 178 3.11e-14 72.0
Msa1278450 AT1G64000.1 43.056 72 40 1 154 225 115 185 3.36e-14 70.9
Msa1278450 AT5G13080.1 47.541 61 31 1 151 211 65 124 4.04e-14 69.3
Msa1278450 AT2G40750.1 42.857 77 39 2 135 209 137 210 5.39e-14 72.4
Msa1278450 AT3G01970.1 45.000 60 32 1 151 210 63 121 7.14e-14 68.6
Msa1278450 AT2G44745.1 42.308 78 42 3 135 210 125 201 1.08e-13 69.7
Msa1278450 AT5G41570.1 43.056 72 40 1 154 225 99 169 2.35e-13 68.2
Msa1278450 AT5G43290.1 36.937 111 67 2 151 261 112 219 2.58e-13 69.7
Msa1278450 AT3G56400.1 41.026 78 41 3 134 209 104 178 2.79e-13 69.7
Msa1278450 AT3G01080.3 45.205 73 38 2 149 221 201 271 2.87e-13 70.1
Msa1278450 AT1G55600.1 44.262 61 33 1 153 213 307 366 3.41e-13 70.5
Msa1278450 AT2G30250.1 49.180 61 30 1 154 214 329 388 5.72e-13 69.7
Msa1278450 AT2G46130.1 49.153 59 29 1 154 212 31 88 7.29e-13 64.7
Msa1278450 AT1G66550.1 29.565 230 113 9 87 298 33 231 1.52e-12 67.0
Msa1278450 AT5G24110.1 50.000 58 27 1 154 209 114 171 2.70e-12 67.0
Msa1278450 AT1G66550.2 29.130 230 109 9 87 298 33 226 2.58e-11 63.5
Msa1278450 AT5G01900.1 47.368 57 28 1 154 208 111 167 6.28e-11 62.4

Find 93 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCACCGACACTTTAAATTAA+AGG 0.188108 8_3:+14771734 None:intergenic
GACCTTGTCTTTAACGGTTA+TGG 0.227776 8_3:-14773625 Msa1278450:exon
AGATATGCCTCAACTGATTT+TGG 0.239447 8_3:-14771710 Msa1278450:three_prime_UTR
TTAGAGGAATTGGTACATTA+TGG 0.247413 8_3:-14771599 Msa1278450:three_prime_UTR
TAACATTATCACTATACTTT+TGG 0.253143 8_3:+14771530 None:intergenic
TTATTAACCAGTAGCTGTTT+TGG 0.273877 8_3:+14773270 None:intergenic
GGTTGTATATGAGGTGATTT+TGG 0.274712 8_3:+14773291 None:intergenic
TGAATTTGAGTTATCTGATA+TGG 0.292666 8_3:-14772056 Msa1278450:CDS
GTCAGAGAGCAAAGATGATT+TGG 0.293031 8_3:-14772110 Msa1278450:CDS
CTTTCAGACCTTGTCTTTAA+CGG 0.308252 8_3:-14773631 Msa1278450:five_prime_UTR
GGGTCGTGTCGGTGCATTAT+AGG 0.327204 8_3:+14771881 None:intergenic
TTTGTACATTACCAAAAGTA+TGG 0.353893 8_3:+14771460 None:intergenic
GGTTGTTGAGGTGGTGGAGG+AGG 0.354712 8_3:+14773539 None:intergenic
TAACGGTTATGGAGGTAGAT+TGG 0.366756 8_3:-14773614 Msa1278450:exon
ACTCATAGAAATTCTCTTGC+TGG 0.366942 8_3:-14772268 Msa1278450:CDS
GTGATTGCTAGCCATACTTT+TGG 0.369155 8_3:-14771471 Msa1278450:three_prime_UTR
TCATCTGGTGGTGACTGTTT+TGG 0.371167 8_3:-14771968 Msa1278450:CDS
GGTGGAGGAGGAGGAAGAGG+AGG 0.375401 8_3:+14773551 None:intergenic
TCCATTTCCTATTCTCTGTA+AGG 0.381748 8_3:+14771657 None:intergenic
GGTGGTGGAGGAGGAGGAAG+AGG 0.383063 8_3:+14773548 None:intergenic
ATATGGGCATGGAGGAAATA+TGG 0.384293 8_3:-14772889 Msa1278450:CDS
GGAAGAGGAGGAGGTGAGGT+TGG 0.390083 8_3:+14773563 None:intergenic
TGTTGAGGTGGTGGAGGAGG+AGG 0.393969 8_3:+14773542 None:intergenic
GGATATGGTGAGCCTTTGAT+TGG 0.398953 8_3:+14772859 None:intergenic
AACGGTTATGGAGGTAGATT+GGG 0.399198 8_3:-14773613 Msa1278450:exon
GGTGGTTGTTGAGGTGGTGG+AGG 0.404929 8_3:+14773536 None:intergenic
GGAGGAGGAGGAAGAGGAGG+AGG 0.406513 8_3:+14773554 None:intergenic
ACTTGACTTGTTTGTTCTGT+AGG 0.409675 8_3:+14773453 None:intergenic
AGAAGCTCTCATCAGACATA+TGG 0.410207 8_3:-14772906 Msa1278450:CDS
AATAGAACATTTAGTTTCAA+AGG 0.412333 8_3:+14773413 None:intergenic
GTAACAGATGATTTCTTTGA+AGG 0.418155 8_3:-14772031 Msa1278450:CDS
ATAGAACATTTAGTTTCAAA+GGG 0.433103 8_3:+14773414 None:intergenic
AGAGCAATACTAGCAGCAAA+AGG 0.441287 8_3:+14771941 None:intergenic
TCAGTGTCCTGTCAGACATA+AGG 0.441359 8_3:+14771860 None:intergenic
GGCTAAGGTGGTTGTTGAGG+TGG 0.445368 8_3:+14773530 None:intergenic
GCAAGAGAATTTCTATGAGT+TGG 0.447313 8_3:+14772271 None:intergenic
GATGATGATTTGAAGAAGAA+AGG 0.460344 8_3:+14773366 None:intergenic
AGGAGGAAGAGGAGGAGGTG+AGG 0.460777 8_3:+14773559 None:intergenic
CTTGACTTGTTTGTTCTGTA+GGG 0.462771 8_3:+14773454 None:intergenic
TCCTTACAGAGAATAGGAAA+TGG 0.465200 8_3:-14771658 Msa1278450:three_prime_UTR
GAATTTCTATGAGTTGGAGC+AGG 0.468992 8_3:+14772277 None:intergenic
GTGGCAAGTGGCAACATCAT+TGG 0.470004 8_3:+14771903 None:intergenic
TACAGATGTAGCAGTTCAAA+AGG 0.483623 8_3:-14772382 Msa1278450:CDS
GAAGGTTTAGATGAATTGAC+AGG 0.487690 8_3:-14772013 Msa1278450:CDS
AACTAACAATGCTATGTGAA+AGG 0.488846 8_3:-14771567 Msa1278450:three_prime_UTR
TAAGGTGGTTGTTGAGGTGG+TGG 0.491931 8_3:+14773533 None:intergenic
TCTTGAGCAGTGACAGTTTG+TGG 0.496261 8_3:+14772220 None:intergenic
TATACAACCAAAACAGCTAC+TGG 0.497552 8_3:-14773277 Msa1278450:CDS
TTCCTCTTCAGCTTCTGATG+TGG 0.499055 8_3:+14772159 None:intergenic
GGTGGCTAAGGTGGTTGTTG+AGG 0.500842 8_3:+14773527 None:intergenic
ACTAACAATGCTATGTGAAA+GGG 0.509498 8_3:-14771566 Msa1278450:three_prime_UTR
TTATTATAAGAAGTTGATGA+AGG 0.512812 8_3:+14773495 None:intergenic
ATCAGAAGCTGAAGAGGAAG+AGG 0.515216 8_3:-14772155 Msa1278450:CDS
TATGTAACTATGAACATTGA+TGG 0.516786 8_3:+14772319 None:intergenic
AGTATTGCTCTTCCTGCTTG+TGG 0.519938 8_3:-14771929 Msa1278450:CDS
CAGTGTCCTGTCAGACATAA+GGG 0.527260 8_3:+14771861 None:intergenic
GAAGCTCTCATCAGACATAT+GGG 0.541248 8_3:-14772905 Msa1278450:CDS
ATCCACATCAGAAGCTGAAG+AGG 0.543617 8_3:-14772161 Msa1278450:CDS
TAGGAAGATTCAGCACAAGA+AGG 0.546049 8_3:-14772947 Msa1278450:CDS
TGTTGATGAGGTGGCTAAGG+TGG 0.549800 8_3:+14773518 None:intergenic
GTTCAAAAGGATGTTTAGCA+AGG 0.556447 8_3:-14772369 Msa1278450:CDS
GAGAAGGAAGTAGAAGAGAG+AGG 0.559777 8_3:+14773330 None:intergenic
ACACCTTTAATTTAAAGTGT+CGG 0.561273 8_3:-14771737 Msa1278450:three_prime_UTR
TCACCCCAAGATCCAAAAGA+AGG 0.569923 8_3:-14773221 Msa1278450:intron
AGGTGTTGATGAGGTGGCTA+AGG 0.574633 8_3:+14773515 None:intergenic
CTCCATAACCGTTAAAGACA+AGG 0.576458 8_3:+14773623 None:intergenic
ACACGACCCTTATGTCTGAC+AGG 0.576936 8_3:-14771867 Msa1278450:three_prime_UTR
GAGCAATACTAGCAGCAAAA+GGG 0.577414 8_3:+14771942 None:intergenic
ATTGCTCTTCCTGCTTGTGG+TGG 0.580832 8_3:-14771926 Msa1278450:CDS
GAGGAATTGGTACATTATGG+AGG 0.585375 8_3:-14771596 Msa1278450:three_prime_UTR
CATCATTGGCCACCACAAGC+AGG 0.589284 8_3:+14771917 None:intergenic
CTTGTCTTTAACGGTTATGG+AGG 0.592755 8_3:-14773622 Msa1278450:exon
TAGCAAGGAAACAAGTTGAG+AGG 0.596678 8_3:-14772354 Msa1278450:CDS
AATTTCTATGAGTTGGAGCA+GGG 0.602438 8_3:+14772278 None:intergenic
GTCAGACATAAGGGTCGTGT+CGG 0.602721 8_3:+14771870 None:intergenic
AATGATGAATGATGATGAGG+TGG 0.618504 8_3:-14772083 Msa1278450:CDS
GATCTACATGCTGTAGTCAG+AGG 0.619206 8_3:-14773591 Msa1278450:CDS
TCAAAGGCTCACCATATCCA+AGG 0.623779 8_3:-14772855 Msa1278450:intron
TGATGAAGGTGTTGATGAGG+TGG 0.624767 8_3:+14773509 None:intergenic
ATGTAACTATGAACATTGAT+GGG 0.626118 8_3:+14772320 None:intergenic
ATGTTCATAGTTACATACAC+TGG 0.626605 8_3:-14772313 Msa1278450:CDS
AGAAATGATGAATGATGATG+AGG 0.628467 8_3:-14772086 Msa1278450:CDS
GTGACAGTTTGTGGTGACAA+TGG 0.637730 8_3:+14772229 None:intergenic
TCGTGTCGGTGCATTATAGG+TGG 0.649672 8_3:+14771884 None:intergenic
GCTATGTGTCAGTGTCGTGT+CGG 0.659359 8_3:-14771785 Msa1278450:three_prime_UTR
TAGAACATTTAGTTTCAAAG+GGG 0.665242 8_3:+14773415 None:intergenic
GGTGCATTATAGGTGGCAAG+TGG 0.674306 8_3:+14771891 None:intergenic
TCTCATCAGACATATGGGCA+TGG 0.674402 8_3:-14772900 Msa1278450:CDS
CATCAGACATATGGGCATGG+AGG 0.678030 8_3:-14772897 Msa1278450:CDS
GCTACCACCAAAATCAGTTG+AGG 0.678337 8_3:+14771703 None:intergenic
AGTTGATGAAGGTGTTGATG+AGG 0.693091 8_3:+14773506 None:intergenic
TGATGGTGATGAATAAGAGA+AGG 0.705900 8_3:+14773314 None:intergenic
AAAACAGTAGCATCATCTGG+TGG 0.715149 8_3:-14771980 Msa1278450:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAATAAAAATCATATATTT+TGG - chr8_3:14772055-14772074 Msa1278450:CDS 10.0%
!! AATAAGTTAATAATATAAAC+AGG + chr8_3:14772473-14772492 None:intergenic 10.0%
!! TTATGAAAATAAGATAAAAA+CGG + chr8_3:14772573-14772592 None:intergenic 10.0%
!!! TTAATTAAGTTGTTTATATA+AGG - chr8_3:14772716-14772735 Msa1278450:intron 10.0%
!!! TCAATAAAAATCATATATTT+TGG - chr8_3:14772055-14772074 Msa1278450:CDS 10.0%
!! AATAAGTTAATAATATAAAC+AGG + chr8_3:14772473-14772492 None:intergenic 10.0%
!! TTATGAAAATAAGATAAAAA+CGG + chr8_3:14772573-14772592 None:intergenic 10.0%
!!! TTAATTAAGTTGTTTATATA+AGG - chr8_3:14772716-14772735 Msa1278450:intron 10.0%
!!! AAAAAAAATATACCTTCTTT+TGG + chr8_3:14771959-14771978 None:intergenic 15.0%
!!! GTTTTTTGTATTTTTTTTCA+TGG - chr8_3:14771984-14772003 Msa1278450:CDS 15.0%
!!! AAAAATCATATATTTTGGTA+TGG - chr8_3:14772060-14772079 Msa1278450:CDS 15.0%
!!! AATGACTAATTTTCTAAAAA+AGG + chr8_3:14772153-14772172 None:intergenic 15.0%
!!! AAATTTTTAAAAACAAACCT+TGG + chr8_3:14772330-14772349 None:intergenic 15.0%
!!! TAAATTTGTTAGATATTTTC+TGG + chr8_3:14772368-14772387 None:intergenic 15.0%
!!! TGTTTTTTGTTTTTTTTTTG+AGG - chr8_3:14773543-14773562 Msa1278450:CDS 15.0%
!!! AAAAAAAATATACCTTCTTT+TGG + chr8_3:14771959-14771978 None:intergenic 15.0%
!!! GTTTTTTGTATTTTTTTTCA+TGG - chr8_3:14771984-14772003 Msa1278450:CDS 15.0%
!!! AAAAATCATATATTTTGGTA+TGG - chr8_3:14772060-14772079 Msa1278450:CDS 15.0%
!!! AATGACTAATTTTCTAAAAA+AGG + chr8_3:14772153-14772172 None:intergenic 15.0%
!!! AAATTTTTAAAAACAAACCT+TGG + chr8_3:14772330-14772349 None:intergenic 15.0%
!!! TAAATTTGTTAGATATTTTC+TGG + chr8_3:14772368-14772387 None:intergenic 15.0%
!!! TGTTTTTTGTTTTTTTTTTG+AGG - chr8_3:14773543-14773562 Msa1278450:CDS 15.0%
!!! TTATTATAAGAAGTTGATGA+AGG + chr8_3:14771673-14771692 None:intergenic 20.0%
!!! ATAGAACATTTAGTTTCAAA+GGG + chr8_3:14771754-14771773 None:intergenic 20.0%
!!! AATAGAACATTTAGTTTCAA+AGG + chr8_3:14771755-14771774 None:intergenic 20.0%
!!! GACTTAAATTTTCCTTATTT+AGG - chr8_3:14772085-14772104 Msa1278450:CDS 20.0%
!! AATTTGCATAATCCTAAATA+AGG + chr8_3:14772100-14772119 None:intergenic 20.0%
!! CATTTATTATTCATGATTTG+AGG - chr8_3:14772169-14772188 Msa1278450:CDS 20.0%
!!! TAACATTATCACTATACTTT+TGG + chr8_3:14773638-14773657 None:intergenic 20.0%
!!! TTATTATAAGAAGTTGATGA+AGG + chr8_3:14771673-14771692 None:intergenic 20.0%
!!! ATAGAACATTTAGTTTCAAA+GGG + chr8_3:14771754-14771773 None:intergenic 20.0%
!!! AATAGAACATTTAGTTTCAA+AGG + chr8_3:14771755-14771774 None:intergenic 20.0%
!!! GACTTAAATTTTCCTTATTT+AGG - chr8_3:14772085-14772104 Msa1278450:CDS 20.0%
!! AATTTGCATAATCCTAAATA+AGG + chr8_3:14772100-14772119 None:intergenic 20.0%
!! CATTTATTATTCATGATTTG+AGG - chr8_3:14772169-14772188 Msa1278450:CDS 20.0%
!!! TAACATTATCACTATACTTT+TGG + chr8_3:14773638-14773657 None:intergenic 20.0%
!! TAGAACATTTAGTTTCAAAG+GGG + chr8_3:14771753-14771772 None:intergenic 25.0%
!!! TGCATGTTTTTGCTAATTAT+AGG - chr8_3:14772199-14772218 Msa1278450:CDS 25.0%
! TTAAAAACAAACCTTGGATA+TGG + chr8_3:14772324-14772343 None:intergenic 25.0%
!! TTTTCATAAACTCTCTCAAA+TGG + chr8_3:14772528-14772547 None:intergenic 25.0%
! ATGTAACTATGAACATTGAT+GGG + chr8_3:14772848-14772867 None:intergenic 25.0%
! TATGTAACTATGAACATTGA+TGG + chr8_3:14772849-14772868 None:intergenic 25.0%
!!! GATGAAACTTGTTTTGTAAA+GGG + chr8_3:14772984-14773003 None:intergenic 25.0%
!!! TGATGAAACTTGTTTTGTAA+AGG + chr8_3:14772985-14773004 None:intergenic 25.0%
!! TGAATTTGAGTTATCTGATA+TGG - chr8_3:14773109-14773128 Msa1278450:intron 25.0%
!! ACACCTTTAATTTAAAGTGT+CGG - chr8_3:14773428-14773447 Msa1278450:CDS 25.0%
!!! TGTTTTTTTTTTGAGGTTAG+AGG - chr8_3:14773550-14773569 Msa1278450:CDS 25.0%
! TTTGTACATTACCAAAAGTA+TGG + chr8_3:14773708-14773727 None:intergenic 25.0%
!! TAGAACATTTAGTTTCAAAG+GGG + chr8_3:14771753-14771772 None:intergenic 25.0%
!!! TGCATGTTTTTGCTAATTAT+AGG - chr8_3:14772199-14772218 Msa1278450:CDS 25.0%
! TTAAAAACAAACCTTGGATA+TGG + chr8_3:14772324-14772343 None:intergenic 25.0%
!! TTTTCATAAACTCTCTCAAA+TGG + chr8_3:14772528-14772547 None:intergenic 25.0%
! ATGTAACTATGAACATTGAT+GGG + chr8_3:14772848-14772867 None:intergenic 25.0%
! TATGTAACTATGAACATTGA+TGG + chr8_3:14772849-14772868 None:intergenic 25.0%
!!! GATGAAACTTGTTTTGTAAA+GGG + chr8_3:14772984-14773003 None:intergenic 25.0%
!!! TGATGAAACTTGTTTTGTAA+AGG + chr8_3:14772985-14773004 None:intergenic 25.0%
!! TGAATTTGAGTTATCTGATA+TGG - chr8_3:14773109-14773128 Msa1278450:intron 25.0%
!! ACACCTTTAATTTAAAGTGT+CGG - chr8_3:14773428-14773447 Msa1278450:CDS 25.0%
!!! TGTTTTTTTTTTGAGGTTAG+AGG - chr8_3:14773550-14773569 Msa1278450:CDS 25.0%
! TTTGTACATTACCAAAAGTA+TGG + chr8_3:14773708-14773727 None:intergenic 25.0%
GATGATGATTTGAAGAAGAA+AGG + chr8_3:14771802-14771821 None:intergenic 30.0%
! TTATTAACCAGTAGCTGTTT+TGG + chr8_3:14771898-14771917 None:intergenic 30.0%
! TATACCTTCTTTTGGATCTT+GGG + chr8_3:14771951-14771970 None:intergenic 30.0%
! ATATACCTTCTTTTGGATCT+TGG + chr8_3:14771952-14771971 None:intergenic 30.0%
TATGGTCAAAAACCAATCAA+AGG - chr8_3:14772294-14772313 Msa1278450:CDS 30.0%
! TGTTTTCATTAGCTATTCTG+TGG + chr8_3:14772599-14772618 None:intergenic 30.0%
!!! GATGTATCATAAGTTGGTTT+TGG + chr8_3:14772659-14772678 None:intergenic 30.0%
CTTACTGATGTATCATAAGT+TGG + chr8_3:14772665-14772684 None:intergenic 30.0%
ATGTTCATAGTTACATACAC+TGG - chr8_3:14772852-14772871 Msa1278450:intron 30.0%
! AGAAATGATGAATGATGATG+AGG - chr8_3:14773079-14773098 Msa1278450:intron 30.0%
GTAACAGATGATTTCTTTGA+AGG - chr8_3:14773134-14773153 Msa1278450:intron 30.0%
!!! TTTTTTGAGGTTAGAGGAAT+TGG - chr8_3:14773556-14773575 Msa1278450:CDS 30.0%
TTAGAGGAATTGGTACATTA+TGG - chr8_3:14773566-14773585 Msa1278450:CDS 30.0%
AACTAACAATGCTATGTGAA+AGG - chr8_3:14773598-14773617 Msa1278450:CDS 30.0%
ACTAACAATGCTATGTGAAA+GGG - chr8_3:14773599-14773618 Msa1278450:CDS 30.0%
GATGATGATTTGAAGAAGAA+AGG + chr8_3:14771802-14771821 None:intergenic 30.0%
! TTATTAACCAGTAGCTGTTT+TGG + chr8_3:14771898-14771917 None:intergenic 30.0%
! TATACCTTCTTTTGGATCTT+GGG + chr8_3:14771951-14771970 None:intergenic 30.0%
! ATATACCTTCTTTTGGATCT+TGG + chr8_3:14771952-14771971 None:intergenic 30.0%
TATGGTCAAAAACCAATCAA+AGG - chr8_3:14772294-14772313 Msa1278450:CDS 30.0%
! TGTTTTCATTAGCTATTCTG+TGG + chr8_3:14772599-14772618 None:intergenic 30.0%
!!! GATGTATCATAAGTTGGTTT+TGG + chr8_3:14772659-14772678 None:intergenic 30.0%
CTTACTGATGTATCATAAGT+TGG + chr8_3:14772665-14772684 None:intergenic 30.0%
ATGTTCATAGTTACATACAC+TGG - chr8_3:14772852-14772871 Msa1278450:intron 30.0%
! AGAAATGATGAATGATGATG+AGG - chr8_3:14773079-14773098 Msa1278450:intron 30.0%
GTAACAGATGATTTCTTTGA+AGG - chr8_3:14773134-14773153 Msa1278450:intron 30.0%
!!! TTTTTTGAGGTTAGAGGAAT+TGG - chr8_3:14773556-14773575 Msa1278450:CDS 30.0%
TTAGAGGAATTGGTACATTA+TGG - chr8_3:14773566-14773585 Msa1278450:CDS 30.0%
AACTAACAATGCTATGTGAA+AGG - chr8_3:14773598-14773617 Msa1278450:CDS 30.0%
ACTAACAATGCTATGTGAAA+GGG - chr8_3:14773599-14773618 Msa1278450:CDS 30.0%
CTTTCAGACCTTGTCTTTAA+CGG - chr8_3:14771534-14771553 Msa1278450:three_prime_UTR 35.0%
!! CTTGACTTGTTTGTTCTGTA+GGG + chr8_3:14771714-14771733 None:intergenic 35.0%
!! ACTTGACTTGTTTGTTCTGT+AGG + chr8_3:14771715-14771734 None:intergenic 35.0%
! TGATGGTGATGAATAAGAGA+AGG + chr8_3:14771854-14771873 None:intergenic 35.0%
!! ATATGAGGTGATTTTGGTGA+TGG + chr8_3:14771871-14771890 None:intergenic 35.0%
! GGTTGTATATGAGGTGATTT+TGG + chr8_3:14771877-14771896 None:intergenic 35.0%
!!! AGCTGTTTTGGTTGTATATG+AGG + chr8_3:14771886-14771905 None:intergenic 35.0%
TATACAACCAAAACAGCTAC+TGG - chr8_3:14771888-14771907 Msa1278450:three_prime_UTR 35.0%
! ATACCTTCTTTTGGATCTTG+GGG + chr8_3:14771950-14771969 None:intergenic 35.0%
AATAACATAGACACAAGCAG+AGG + chr8_3:14772751-14772770 None:intergenic 35.0%
TGTGTCTATGTTATTCACAG+AGG - chr8_3:14772756-14772775 Msa1278450:intron 35.0%
TACAGATGTAGCAGTTCAAA+AGG - chr8_3:14772783-14772802 Msa1278450:intron 35.0%
GTTCAAAAGGATGTTTAGCA+AGG - chr8_3:14772796-14772815 Msa1278450:intron 35.0%
! AATTTCTATGAGTTGGAGCA+GGG + chr8_3:14772890-14772909 None:intergenic 35.0%
GCAAGAGAATTTCTATGAGT+TGG + chr8_3:14772897-14772916 None:intergenic 35.0%
ACTCATAGAAATTCTCTTGC+TGG - chr8_3:14772897-14772916 Msa1278450:CDS 35.0%
!! TTGTTTTGTAAAGGGCTGTT+GGG + chr8_3:14772976-14772995 None:intergenic 35.0%
! AATGATGAATGATGATGAGG+TGG - chr8_3:14773082-14773101 Msa1278450:intron 35.0%
GAAGGTTTAGATGAATTGAC+AGG - chr8_3:14773152-14773171 Msa1278450:intron 35.0%
! GCACCGACACTTTAAATTAA+AGG + chr8_3:14773434-14773453 None:intergenic 35.0%
!! AGATATGCCTCAACTGATTT+TGG - chr8_3:14773455-14773474 Msa1278450:CDS 35.0%
! AGCTTTTCCTTACAGAGAAT+AGG - chr8_3:14773501-14773520 Msa1278450:CDS 35.0%
TCCTTACAGAGAATAGGAAA+TGG - chr8_3:14773507-14773526 Msa1278450:CDS 35.0%
TCCATTTCCTATTCTCTGTA+AGG + chr8_3:14773511-14773530 None:intergenic 35.0%
CTTTCAGACCTTGTCTTTAA+CGG - chr8_3:14771534-14771553 Msa1278450:three_prime_UTR 35.0%
!! CTTGACTTGTTTGTTCTGTA+GGG + chr8_3:14771714-14771733 None:intergenic 35.0%
!! ACTTGACTTGTTTGTTCTGT+AGG + chr8_3:14771715-14771734 None:intergenic 35.0%
! TGATGGTGATGAATAAGAGA+AGG + chr8_3:14771854-14771873 None:intergenic 35.0%
!! ATATGAGGTGATTTTGGTGA+TGG + chr8_3:14771871-14771890 None:intergenic 35.0%
! GGTTGTATATGAGGTGATTT+TGG + chr8_3:14771877-14771896 None:intergenic 35.0%
!!! AGCTGTTTTGGTTGTATATG+AGG + chr8_3:14771886-14771905 None:intergenic 35.0%
TATACAACCAAAACAGCTAC+TGG - chr8_3:14771888-14771907 Msa1278450:three_prime_UTR 35.0%
! ATACCTTCTTTTGGATCTTG+GGG + chr8_3:14771950-14771969 None:intergenic 35.0%
AATAACATAGACACAAGCAG+AGG + chr8_3:14772751-14772770 None:intergenic 35.0%
TGTGTCTATGTTATTCACAG+AGG - chr8_3:14772756-14772775 Msa1278450:intron 35.0%
TACAGATGTAGCAGTTCAAA+AGG - chr8_3:14772783-14772802 Msa1278450:intron 35.0%
GTTCAAAAGGATGTTTAGCA+AGG - chr8_3:14772796-14772815 Msa1278450:intron 35.0%
! AATTTCTATGAGTTGGAGCA+GGG + chr8_3:14772890-14772909 None:intergenic 35.0%
GCAAGAGAATTTCTATGAGT+TGG + chr8_3:14772897-14772916 None:intergenic 35.0%
ACTCATAGAAATTCTCTTGC+TGG - chr8_3:14772897-14772916 Msa1278450:CDS 35.0%
!! TTGTTTTGTAAAGGGCTGTT+GGG + chr8_3:14772976-14772995 None:intergenic 35.0%
! AATGATGAATGATGATGAGG+TGG - chr8_3:14773082-14773101 Msa1278450:intron 35.0%
GAAGGTTTAGATGAATTGAC+AGG - chr8_3:14773152-14773171 Msa1278450:intron 35.0%
! GCACCGACACTTTAAATTAA+AGG + chr8_3:14773434-14773453 None:intergenic 35.0%
!! AGATATGCCTCAACTGATTT+TGG - chr8_3:14773455-14773474 Msa1278450:CDS 35.0%
! AGCTTTTCCTTACAGAGAAT+AGG - chr8_3:14773501-14773520 Msa1278450:CDS 35.0%
TCCTTACAGAGAATAGGAAA+TGG - chr8_3:14773507-14773526 Msa1278450:CDS 35.0%
TCCATTTCCTATTCTCTGTA+AGG + chr8_3:14773511-14773530 None:intergenic 35.0%
TGTTTAGAGAGAGAGAGAGA+GGG + chr8_3:14771488-14771507 None:intergenic 40.0%
GACCTTGTCTTTAACGGTTA+TGG - chr8_3:14771540-14771559 Msa1278450:three_prime_UTR 40.0%
CTCCATAACCGTTAAAGACA+AGG + chr8_3:14771545-14771564 None:intergenic 40.0%
CTTGTCTTTAACGGTTATGG+AGG - chr8_3:14771543-14771562 Msa1278450:three_prime_UTR 40.0%
TAACGGTTATGGAGGTAGAT+TGG - chr8_3:14771551-14771570 Msa1278450:three_prime_UTR 40.0%
AACGGTTATGGAGGTAGATT+GGG - chr8_3:14771552-14771571 Msa1278450:three_prime_UTR 40.0%
!! AGTTGATGAAGGTGTTGATG+AGG + chr8_3:14771662-14771681 None:intergenic 40.0%
TAGGAAGATTCAGCACAAGA+AGG - chr8_3:14772218-14772237 Msa1278450:CDS 40.0%
AGAAGCTCTCATCAGACATA+TGG - chr8_3:14772259-14772278 Msa1278450:CDS 40.0%
GAAGCTCTCATCAGACATAT+GGG - chr8_3:14772260-14772279 Msa1278450:CDS 40.0%
ATATGGGCATGGAGGAAATA+TGG - chr8_3:14772276-14772295 Msa1278450:CDS 40.0%
! TAGCAAGGAAACAAGTTGAG+AGG - chr8_3:14772811-14772830 Msa1278450:intron 40.0%
! GAATTTCTATGAGTTGGAGC+AGG + chr8_3:14772891-14772910 None:intergenic 40.0%
!!! CTTGTTTTGTAAAGGGCTGT+TGG + chr8_3:14772977-14772996 None:intergenic 40.0%
GTCAGAGAGCAAAGATGATT+TGG - chr8_3:14773055-14773074 Msa1278450:intron 40.0%
! GATGAATTGACAGGTTTTGC+TGG - chr8_3:14773161-14773180 Msa1278450:intron 40.0%
GGAAAAACAGTAGCATCATC+TGG - chr8_3:14773182-14773201 Msa1278450:intron 40.0%
AAAACAGTAGCATCATCTGG+TGG - chr8_3:14773185-14773204 Msa1278450:intron 40.0%
GAGCAATACTAGCAGCAAAA+GGG + chr8_3:14773226-14773245 None:intergenic 40.0%
AGAGCAATACTAGCAGCAAA+AGG + chr8_3:14773227-14773246 None:intergenic 40.0%
!! TATGCCTCAACTGATTTTGG+TGG - chr8_3:14773458-14773477 Msa1278450:CDS 40.0%
GAGGAATTGGTACATTATGG+AGG - chr8_3:14773569-14773588 Msa1278450:CDS 40.0%
! GTGATTGCTAGCCATACTTT+TGG - chr8_3:14773694-14773713 Msa1278450:five_prime_UTR 40.0%
TGTTTAGAGAGAGAGAGAGA+GGG + chr8_3:14771488-14771507 None:intergenic 40.0%
GACCTTGTCTTTAACGGTTA+TGG - chr8_3:14771540-14771559 Msa1278450:three_prime_UTR 40.0%
CTCCATAACCGTTAAAGACA+AGG + chr8_3:14771545-14771564 None:intergenic 40.0%
CTTGTCTTTAACGGTTATGG+AGG - chr8_3:14771543-14771562 Msa1278450:three_prime_UTR 40.0%
TAACGGTTATGGAGGTAGAT+TGG - chr8_3:14771551-14771570 Msa1278450:three_prime_UTR 40.0%
AACGGTTATGGAGGTAGATT+GGG - chr8_3:14771552-14771571 Msa1278450:three_prime_UTR 40.0%
!! AGTTGATGAAGGTGTTGATG+AGG + chr8_3:14771662-14771681 None:intergenic 40.0%
TAGGAAGATTCAGCACAAGA+AGG - chr8_3:14772218-14772237 Msa1278450:CDS 40.0%
AGAAGCTCTCATCAGACATA+TGG - chr8_3:14772259-14772278 Msa1278450:CDS 40.0%
GAAGCTCTCATCAGACATAT+GGG - chr8_3:14772260-14772279 Msa1278450:CDS 40.0%
ATATGGGCATGGAGGAAATA+TGG - chr8_3:14772276-14772295 Msa1278450:CDS 40.0%
! TAGCAAGGAAACAAGTTGAG+AGG - chr8_3:14772811-14772830 Msa1278450:intron 40.0%
! GAATTTCTATGAGTTGGAGC+AGG + chr8_3:14772891-14772910 None:intergenic 40.0%
!!! CTTGTTTTGTAAAGGGCTGT+TGG + chr8_3:14772977-14772996 None:intergenic 40.0%
GTCAGAGAGCAAAGATGATT+TGG - chr8_3:14773055-14773074 Msa1278450:intron 40.0%
! GATGAATTGACAGGTTTTGC+TGG - chr8_3:14773161-14773180 Msa1278450:intron 40.0%
GGAAAAACAGTAGCATCATC+TGG - chr8_3:14773182-14773201 Msa1278450:intron 40.0%
AAAACAGTAGCATCATCTGG+TGG - chr8_3:14773185-14773204 Msa1278450:intron 40.0%
GAGCAATACTAGCAGCAAAA+GGG + chr8_3:14773226-14773245 None:intergenic 40.0%
AGAGCAATACTAGCAGCAAA+AGG + chr8_3:14773227-14773246 None:intergenic 40.0%
!! TATGCCTCAACTGATTTTGG+TGG - chr8_3:14773458-14773477 Msa1278450:CDS 40.0%
GAGGAATTGGTACATTATGG+AGG - chr8_3:14773569-14773588 Msa1278450:CDS 40.0%
! GTGATTGCTAGCCATACTTT+TGG - chr8_3:14773694-14773713 Msa1278450:five_prime_UTR 40.0%
CTGTTTAGAGAGAGAGAGAG+AGG + chr8_3:14771489-14771508 None:intergenic 45.0%
GATCTACATGCTGTAGTCAG+AGG - chr8_3:14771574-14771593 Msa1278450:three_prime_UTR 45.0%
!! TGATGAAGGTGTTGATGAGG+TGG + chr8_3:14771659-14771678 None:intergenic 45.0%
GAGAAGGAAGTAGAAGAGAG+AGG + chr8_3:14771838-14771857 None:intergenic 45.0%
! TCTTTTGGATCTTGGGGTGA+TGG + chr8_3:14771944-14771963 None:intergenic 45.0%
TCACCCCAAGATCCAAAAGA+AGG - chr8_3:14771944-14771963 Msa1278450:CDS 45.0%
TCTCATCAGACATATGGGCA+TGG - chr8_3:14772265-14772284 Msa1278450:CDS 45.0%
GGATATGGTGAGCCTTTGAT+TGG + chr8_3:14772309-14772328 None:intergenic 45.0%
TCAAAGGCTCACCATATCCA+AGG - chr8_3:14772310-14772329 Msa1278450:CDS 45.0%
ACATAGACACAAGCAGAGGT+TGG + chr8_3:14772747-14772766 None:intergenic 45.0%
GTGACAGTTTGTGGTGACAA+TGG + chr8_3:14772939-14772958 None:intergenic 45.0%
TCTTGAGCAGTGACAGTTTG+TGG + chr8_3:14772948-14772967 None:intergenic 45.0%
ATCCACATCAGAAGCTGAAG+AGG - chr8_3:14773004-14773023 Msa1278450:intron 45.0%
TTCCTCTTCAGCTTCTGATG+TGG + chr8_3:14773009-14773028 None:intergenic 45.0%
ATCAGAAGCTGAAGAGGAAG+AGG - chr8_3:14773010-14773029 Msa1278450:intron 45.0%
!! TCATCTGGTGGTGACTGTTT+TGG - chr8_3:14773197-14773216 Msa1278450:intron 45.0%
AGTATTGCTCTTCCTGCTTG+TGG - chr8_3:14773236-14773255 Msa1278450:CDS 45.0%
CAGTGTCCTGTCAGACATAA+GGG + chr8_3:14773307-14773326 None:intergenic 45.0%
TCAGTGTCCTGTCAGACATA+AGG + chr8_3:14773308-14773327 None:intergenic 45.0%
GCTACCACCAAAATCAGTTG+AGG + chr8_3:14773465-14773484 None:intergenic 45.0%
CTGTTTAGAGAGAGAGAGAG+AGG + chr8_3:14771489-14771508 None:intergenic 45.0%
GATCTACATGCTGTAGTCAG+AGG - chr8_3:14771574-14771593 Msa1278450:three_prime_UTR 45.0%
!! TGATGAAGGTGTTGATGAGG+TGG + chr8_3:14771659-14771678 None:intergenic 45.0%
GAGAAGGAAGTAGAAGAGAG+AGG + chr8_3:14771838-14771857 None:intergenic 45.0%
! TCTTTTGGATCTTGGGGTGA+TGG + chr8_3:14771944-14771963 None:intergenic 45.0%
TCACCCCAAGATCCAAAAGA+AGG - chr8_3:14771944-14771963 Msa1278450:CDS 45.0%
TCTCATCAGACATATGGGCA+TGG - chr8_3:14772265-14772284 Msa1278450:CDS 45.0%
GGATATGGTGAGCCTTTGAT+TGG + chr8_3:14772309-14772328 None:intergenic 45.0%
TCAAAGGCTCACCATATCCA+AGG - chr8_3:14772310-14772329 Msa1278450:CDS 45.0%
ACATAGACACAAGCAGAGGT+TGG + chr8_3:14772747-14772766 None:intergenic 45.0%
GTGACAGTTTGTGGTGACAA+TGG + chr8_3:14772939-14772958 None:intergenic 45.0%
TCTTGAGCAGTGACAGTTTG+TGG + chr8_3:14772948-14772967 None:intergenic 45.0%
ATCCACATCAGAAGCTGAAG+AGG - chr8_3:14773004-14773023 Msa1278450:intron 45.0%
TTCCTCTTCAGCTTCTGATG+TGG + chr8_3:14773009-14773028 None:intergenic 45.0%
ATCAGAAGCTGAAGAGGAAG+AGG - chr8_3:14773010-14773029 Msa1278450:intron 45.0%
!! TCATCTGGTGGTGACTGTTT+TGG - chr8_3:14773197-14773216 Msa1278450:intron 45.0%
AGTATTGCTCTTCCTGCTTG+TGG - chr8_3:14773236-14773255 Msa1278450:CDS 45.0%
CAGTGTCCTGTCAGACATAA+GGG + chr8_3:14773307-14773326 None:intergenic 45.0%
TCAGTGTCCTGTCAGACATA+AGG + chr8_3:14773308-14773327 None:intergenic 45.0%
GCTACCACCAAAATCAGTTG+AGG + chr8_3:14773465-14773484 None:intergenic 45.0%
TAAGGTGGTTGTTGAGGTGG+TGG + chr8_3:14771635-14771654 None:intergenic 50.0%
! TGTTGATGAGGTGGCTAAGG+TGG + chr8_3:14771650-14771669 None:intergenic 50.0%
!! AGGTGTTGATGAGGTGGCTA+AGG + chr8_3:14771653-14771672 None:intergenic 50.0%
CATCAGACATATGGGCATGG+AGG - chr8_3:14772268-14772287 Msa1278450:CDS 50.0%
ATTGCTCTTCCTGCTTGTGG+TGG - chr8_3:14773239-14773258 Msa1278450:CDS 50.0%
GTGGCAAGTGGCAACATCAT+TGG + chr8_3:14773265-14773284 None:intergenic 50.0%
GGTGCATTATAGGTGGCAAG+TGG + chr8_3:14773277-14773296 None:intergenic 50.0%
! TCGTGTCGGTGCATTATAGG+TGG + chr8_3:14773284-14773303 None:intergenic 50.0%
GTCAGACATAAGGGTCGTGT+CGG + chr8_3:14773298-14773317 None:intergenic 50.0%
ACACGACCCTTATGTCTGAC+AGG - chr8_3:14773298-14773317 Msa1278450:CDS 50.0%
GCTATGTGTCAGTGTCGTGT+CGG - chr8_3:14773380-14773399 Msa1278450:CDS 50.0%
TAAGGTGGTTGTTGAGGTGG+TGG + chr8_3:14771635-14771654 None:intergenic 50.0%
! TGTTGATGAGGTGGCTAAGG+TGG + chr8_3:14771650-14771669 None:intergenic 50.0%
!! AGGTGTTGATGAGGTGGCTA+AGG + chr8_3:14771653-14771672 None:intergenic 50.0%
CATCAGACATATGGGCATGG+AGG - chr8_3:14772268-14772287 Msa1278450:CDS 50.0%
ATTGCTCTTCCTGCTTGTGG+TGG - chr8_3:14773239-14773258 Msa1278450:CDS 50.0%
GTGGCAAGTGGCAACATCAT+TGG + chr8_3:14773265-14773284 None:intergenic 50.0%
GGTGCATTATAGGTGGCAAG+TGG + chr8_3:14773277-14773296 None:intergenic 50.0%
! TCGTGTCGGTGCATTATAGG+TGG + chr8_3:14773284-14773303 None:intergenic 50.0%
GTCAGACATAAGGGTCGTGT+CGG + chr8_3:14773298-14773317 None:intergenic 50.0%
ACACGACCCTTATGTCTGAC+AGG - chr8_3:14773298-14773317 Msa1278450:CDS 50.0%
GCTATGTGTCAGTGTCGTGT+CGG - chr8_3:14773380-14773399 Msa1278450:CDS 50.0%
!!! AGAGAGGGCGCTGACTTTTG+AGG + chr8_3:14771473-14771492 None:intergenic 55.0%
GGCTAAGGTGGTTGTTGAGG+TGG + chr8_3:14771638-14771657 None:intergenic 55.0%
GGTGGCTAAGGTGGTTGTTG+AGG + chr8_3:14771641-14771660 None:intergenic 55.0%
CATCATTGGCCACCACAAGC+AGG + chr8_3:14773251-14773270 None:intergenic 55.0%
! GGGTCGTGTCGGTGCATTAT+AGG + chr8_3:14773287-14773306 None:intergenic 55.0%
!!! AGAGAGGGCGCTGACTTTTG+AGG + chr8_3:14771473-14771492 None:intergenic 55.0%
GGCTAAGGTGGTTGTTGAGG+TGG + chr8_3:14771638-14771657 None:intergenic 55.0%
GGTGGCTAAGGTGGTTGTTG+AGG + chr8_3:14771641-14771660 None:intergenic 55.0%
CATCATTGGCCACCACAAGC+AGG + chr8_3:14773251-14773270 None:intergenic 55.0%
! GGGTCGTGTCGGTGCATTAT+AGG + chr8_3:14773287-14773306 None:intergenic 55.0%
GGAAGAGGAGGAGGTGAGGT+TGG + chr8_3:14771605-14771624 None:intergenic 60.0%
AGGAGGAAGAGGAGGAGGTG+AGG + chr8_3:14771609-14771628 None:intergenic 60.0%
!! TGTTGAGGTGGTGGAGGAGG+AGG + chr8_3:14771626-14771645 None:intergenic 60.0%
!! GGTTGTTGAGGTGGTGGAGG+AGG + chr8_3:14771629-14771648 None:intergenic 60.0%
! GGTGGTTGTTGAGGTGGTGG+AGG + chr8_3:14771632-14771651 None:intergenic 60.0%
GGAAGAGGAGGAGGTGAGGT+TGG + chr8_3:14771605-14771624 None:intergenic 60.0%
AGGAGGAAGAGGAGGAGGTG+AGG + chr8_3:14771609-14771628 None:intergenic 60.0%
!! TGTTGAGGTGGTGGAGGAGG+AGG + chr8_3:14771626-14771645 None:intergenic 60.0%
!! GGTTGTTGAGGTGGTGGAGG+AGG + chr8_3:14771629-14771648 None:intergenic 60.0%
! GGTGGTTGTTGAGGTGGTGG+AGG + chr8_3:14771632-14771651 None:intergenic 60.0%
GGAGGAGGAGGAAGAGGAGG+AGG + chr8_3:14771614-14771633 None:intergenic 65.0%
GGTGGAGGAGGAGGAAGAGG+AGG + chr8_3:14771617-14771636 None:intergenic 65.0%
!! GGTGGTGGAGGAGGAGGAAG+AGG + chr8_3:14771620-14771639 None:intergenic 65.0%
GGAGGAGGAGGAAGAGGAGG+AGG + chr8_3:14771614-14771633 None:intergenic 65.0%
GGTGGAGGAGGAGGAAGAGG+AGG + chr8_3:14771617-14771636 None:intergenic 65.0%
!! GGTGGTGGAGGAGGAGGAAG+AGG + chr8_3:14771620-14771639 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 14771448 14773739 14771448 ID=Msa1278450;Name=Msa1278450
chr8_3 mRNA 14771448 14773739 14771448 ID=Msa1278450-mRNA-1;Parent=Msa1278450;Name=Msa1278450-mRNA-1;_AED=0.01;_eAED=0.01;_QI=111|1|1|1|1|1|3|471|336
chr8_3 exon 14771448 14772411 14771448 ID=Msa1278450-mRNA-1:exon:5724;Parent=Msa1278450-mRNA-1
chr8_3 exon 14772856 14772966 14772856 ID=Msa1278450-mRNA-1:exon:5723;Parent=Msa1278450-mRNA-1
chr8_3 exon 14773222 14773739 14773222 ID=Msa1278450-mRNA-1:exon:5722;Parent=Msa1278450-mRNA-1
chr8_3 five_prime_UTR 14773629 14773739 14773629 ID=Msa1278450-mRNA-1:five_prime_utr;Parent=Msa1278450-mRNA-1
chr8_3 CDS 14773222 14773628 14773222 ID=Msa1278450-mRNA-1:cds;Parent=Msa1278450-mRNA-1
chr8_3 CDS 14772856 14772966 14772856 ID=Msa1278450-mRNA-1:cds;Parent=Msa1278450-mRNA-1
chr8_3 CDS 14771919 14772411 14771919 ID=Msa1278450-mRNA-1:cds;Parent=Msa1278450-mRNA-1
chr8_3 three_prime_UTR 14771448 14771918 14771448 ID=Msa1278450-mRNA-1:three_prime_utr;Parent=Msa1278450-mRNA-1
Gene Sequence

>Msa1278450

ATGGAGGTAGATTGGGATCTACATGCTGTAGTCAGAGGCTATACCAACCTCACCTCCTCCTCTTCCTCCTCCTCCACCACCTCAACAACCACCTTAGCCACCTCATCAACACCTTCATCAACTTCTTATAATAATAACTTTTTCTCTATTTACCCTACAGAACAAACAAGTCAAGTTTTTTCACTTTCAAACCCCTTTGAAACTAAATGTTCTATTGAAGAATTGCATGAACTTTGCAAACCTTTCTTCTTCAAATCATCATCATCATCATCACAACCTCTCTCTTCTACTTCCTTCTCTTATTCATCACCATCACCAAAATCACCTCATATACAACCAAAACAGCTACTGGTTAATAACAAGCTTCATCATGCTGCTTCTGCCATCACCCCAAGATCCAAAAGAAGGAAGATTCAGCACAAGAAGGTTTGTGAAGTGCAAGCTGAGAAGCTCTCATCAGACATATGGGCATGGAGGAAATATGGTCAAAAACCAATCAAAGGCTCACCATATCCAAGAGGATATTACAGATGTAGCAGTTCAAAAGGATGTTTAGCAAGGAAACAAGTTGAGAGGAACAAATCAGACCCATCAATGTTCATAGTTACATACACTGGTGAACACAGTCACCCTGCTCCAACTCATAGAAATTCTCTTGCTGGTTCAACAAGACAGAAGCCATTGTCACCACAAACTGTCACTGCTCAAGACACTTCCCAACAGCCCTTTACAAAACAAGTTTCATCATCCACATCAGAAGCTGAAGAGGAAGAGGCTACAACACTATTAAGTGTAAAGTCAGAGAGCAAAGATGATTTGGAAGAAATGATGAATGATGATGAGGTGGAAAATGAATTTGAGTTATCTGATATGGTTGTAACAGATGATTTCTTTGAAGGTTTAGATGAATTGACAGGTTTTGCTGGAAAAACAGTAGCATCATCTGGTGGTGACTGTTTTGGTGACCCTTTTGCTGCTAGTATTGCTCTTCCTGCTTGTGGTGGCCAATGA
Protein sequence

>Msa1278450

MEVDWDLHAVVRGYTNLTSSSSSSSTTSTTTLATSSTPSSTSYNNNFFSIYPTEQTSQVFSLSNPFETKCSIEELHELCKPFFFKSSSSSSQPLSSTSFSYSSPSPKSPHIQPKQLLVNNKLHHAASAITPRSKRRKIQHKKVCEVQAEKLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNKSDPSMFIVTYTGEHSHPAPTHRNSLAGSTRQKPLSPQTVTAQDTSQQPFTKQVSSSTSEAEEEEATTLLSVKSESKDDLEEMMNDDEVENEFELSDMVVTDDFFEGLDELTGFAGKTVASSGGDCFGDPFAASIALPACGGQ*