Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279740 | XP_003627814.1 | 96.648 | 179 | 4 | 1 | 1 | 179 | 1 | 177 | 9.22e-121 | 348 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279740 | sp|Q2RAP3|ORR9_ORYSJ | 70.807 | 161 | 42 | 2 | 1 | 160 | 1 | 157 | 8.87e-76 | 228 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279740 | Q1RU46 | 96.648 | 179 | 4 | 1 | 1 | 179 | 1 | 177 | 4.40e-121 | 348 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1279740 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279740 | MtrunA17_Chr8g0352871 | 96.648 | 179 | 4 | 1 | 1 | 179 | 1 | 177 | 8.48e-125 | 348 |
| Msa1279740 | MtrunA17_Chr3g0082861 | 81.529 | 157 | 25 | 3 | 8 | 162 | 3 | 157 | 3.54e-85 | 248 |
| Msa1279740 | MtrunA17_Chr7g0256551 | 73.077 | 156 | 41 | 1 | 1 | 155 | 1 | 156 | 1.19e-81 | 241 |
| Msa1279740 | MtrunA17_Chr3g0124861 | 58.125 | 160 | 56 | 2 | 6 | 155 | 19 | 177 | 4.26e-59 | 184 |
| Msa1279740 | MtrunA17_Chr4g0059571 | 54.762 | 168 | 64 | 3 | 4 | 170 | 21 | 177 | 8.96e-54 | 170 |
| Msa1279740 | MtrunA17_Chr5g0414931 | 58.451 | 142 | 55 | 1 | 8 | 149 | 15 | 152 | 6.82e-53 | 168 |
| Msa1279740 | MtrunA17_Chr1g0170741 | 59.859 | 142 | 52 | 2 | 8 | 149 | 7 | 143 | 3.93e-51 | 162 |
| Msa1279740 | MtrunA17_Chr3g0118211 | 52.174 | 161 | 60 | 3 | 4 | 156 | 18 | 169 | 7.92e-51 | 162 |
| Msa1279740 | MtrunA17_Chr4g0021731 | 82.609 | 92 | 8 | 1 | 3 | 94 | 5 | 88 | 1.08e-48 | 153 |
| Msa1279740 | MtrunA17_Chr3g0128691 | 57.246 | 138 | 49 | 3 | 10 | 145 | 19 | 148 | 1.35e-48 | 155 |
| Msa1279740 | MtrunA17_Chr8g0376881 | 29.193 | 161 | 90 | 4 | 11 | 167 | 31 | 171 | 2.95e-15 | 72.8 |
| Msa1279740 | MtrunA17_Chr8g0345901 | 28.777 | 139 | 82 | 1 | 11 | 149 | 38 | 159 | 6.89e-15 | 71.6 |
| Msa1279740 | MtrunA17_Chr4g0030271 | 30.882 | 136 | 77 | 2 | 11 | 146 | 91 | 209 | 6.56e-14 | 68.9 |
| Msa1279740 | MtrunA17_Chr7g0275891 | 30.435 | 138 | 77 | 3 | 11 | 148 | 11 | 129 | 4.51e-13 | 66.2 |
| Msa1279740 | MtrunA17_Chr7g0275401 | 30.000 | 140 | 78 | 3 | 9 | 148 | 9 | 128 | 5.77e-13 | 65.5 |
| Msa1279740 | MtrunA17_Chr3g0123131 | 27.273 | 165 | 93 | 4 | 11 | 168 | 19 | 163 | 8.12e-13 | 65.9 |
| Msa1279740 | MtrunA17_Chr1g0149851 | 30.435 | 138 | 76 | 3 | 11 | 148 | 11 | 128 | 2.06e-12 | 64.3 |
| Msa1279740 | MtrunA17_Chr1g0161431 | 28.276 | 145 | 84 | 3 | 11 | 155 | 17 | 141 | 2.51e-12 | 64.3 |
| Msa1279740 | MtrunA17_Chr1g0149841 | 29.710 | 138 | 77 | 3 | 11 | 148 | 11 | 128 | 4.16e-12 | 63.5 |
| Msa1279740 | MtrunA17_Chr3g0127941 | 28.058 | 139 | 83 | 2 | 11 | 149 | 58 | 179 | 6.97e-12 | 63.2 |
| Msa1279740 | MtrunA17_Chr4g0074411 | 27.108 | 166 | 100 | 4 | 11 | 176 | 24 | 168 | 7.92e-12 | 62.8 |
| Msa1279740 | MtrunA17_Chr7g0276361 | 27.273 | 132 | 77 | 2 | 15 | 146 | 22 | 134 | 1.83e-11 | 61.6 |
| Msa1279740 | MtrunA17_Chr3g0137101 | 27.607 | 163 | 89 | 3 | 11 | 173 | 14 | 147 | 1.97e-11 | 61.6 |
| Msa1279740 | MtrunA17_Chr4g0067981 | 27.326 | 172 | 94 | 5 | 9 | 178 | 35 | 177 | 3.88e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1279740 | AT2G41310.1 | 53.456 | 217 | 60 | 1 | 1 | 176 | 1 | 217 | 2.31e-75 | 225 |
| Msa1279740 | AT3G57040.2 | 65.868 | 167 | 49 | 2 | 1 | 162 | 1 | 164 | 6.86e-74 | 222 |
| Msa1279740 | AT3G57040.1 | 65.868 | 167 | 49 | 2 | 1 | 162 | 1 | 164 | 6.86e-74 | 222 |
| Msa1279740 | AT1G59940.1 | 61.429 | 140 | 46 | 2 | 7 | 146 | 31 | 162 | 1.06e-55 | 176 |
| Msa1279740 | AT1G59940.2 | 61.429 | 140 | 46 | 2 | 7 | 146 | 123 | 254 | 6.39e-54 | 174 |
| Msa1279740 | AT1G10470.3 | 60.000 | 140 | 48 | 1 | 7 | 146 | 18 | 149 | 9.25e-54 | 171 |
| Msa1279740 | AT1G10470.1 | 60.000 | 140 | 48 | 1 | 7 | 146 | 32 | 163 | 1.00e-53 | 171 |
| Msa1279740 | AT3G48100.1 | 56.757 | 148 | 55 | 2 | 2 | 148 | 18 | 157 | 1.24e-53 | 169 |
| Msa1279740 | AT5G62920.1 | 60.432 | 139 | 45 | 2 | 9 | 146 | 25 | 154 | 1.37e-52 | 166 |
| Msa1279740 | AT1G19050.1 | 53.548 | 155 | 64 | 1 | 8 | 162 | 23 | 169 | 4.07e-52 | 166 |
| Msa1279740 | AT3G56380.1 | 53.793 | 145 | 60 | 1 | 4 | 148 | 15 | 152 | 8.77e-52 | 163 |
| Msa1279740 | AT1G74890.1 | 55.172 | 145 | 57 | 1 | 8 | 152 | 17 | 153 | 2.30e-50 | 161 |
| Msa1279740 | AT2G40670.1 | 53.901 | 141 | 60 | 2 | 8 | 148 | 28 | 163 | 2.89e-50 | 159 |
| Msa1279740 | AT3G56380.2 | 53.425 | 146 | 60 | 2 | 4 | 148 | 15 | 153 | 5.59e-50 | 159 |
| Msa1279740 | AT2G40670.2 | 53.521 | 142 | 60 | 3 | 8 | 148 | 28 | 164 | 2.05e-48 | 155 |
| Msa1279740 | AT2G07440.1 | 45.833 | 120 | 27 | 1 | 95 | 176 | 9 | 128 | 4.05e-26 | 97.4 |
| Msa1279740 | AT1G10470.2 | 64.151 | 53 | 19 | 0 | 94 | 146 | 35 | 87 | 7.16e-18 | 77.4 |
| Msa1279740 | AT5G60100.7 | 31.618 | 136 | 76 | 2 | 11 | 146 | 66 | 184 | 3.42e-13 | 67.0 |
| Msa1279740 | AT5G60100.6 | 31.618 | 136 | 76 | 2 | 11 | 146 | 66 | 184 | 3.42e-13 | 67.0 |
| Msa1279740 | AT5G60100.4 | 31.618 | 136 | 76 | 2 | 11 | 146 | 66 | 184 | 3.42e-13 | 67.0 |
| Msa1279740 | AT1G67710.1 | 29.861 | 144 | 81 | 3 | 11 | 154 | 13 | 136 | 4.05e-13 | 67.0 |
| Msa1279740 | AT5G60100.2 | 31.618 | 136 | 76 | 2 | 11 | 146 | 66 | 184 | 4.17e-13 | 67.0 |
| Msa1279740 | AT5G07210.2 | 31.655 | 139 | 74 | 3 | 10 | 148 | 17 | 134 | 4.55e-13 | 67.0 |
| Msa1279740 | AT5G60100.5 | 31.618 | 136 | 76 | 2 | 11 | 146 | 66 | 184 | 6.81e-13 | 66.2 |
| Msa1279740 | AT5G60100.3 | 31.618 | 136 | 76 | 2 | 11 | 146 | 66 | 184 | 6.81e-13 | 66.2 |
| Msa1279740 | AT5G60100.1 | 31.618 | 136 | 76 | 2 | 11 | 146 | 66 | 184 | 6.81e-13 | 66.2 |
| Msa1279740 | AT2G25180.1 | 27.742 | 155 | 88 | 4 | 3 | 153 | 7 | 141 | 3.30e-12 | 64.3 |
| Msa1279740 | AT5G02810.1 | 27.941 | 136 | 81 | 2 | 11 | 146 | 80 | 198 | 3.41e-12 | 64.3 |
| Msa1279740 | AT5G24470.1 | 27.857 | 140 | 80 | 3 | 11 | 149 | 54 | 173 | 3.67e-11 | 61.2 |
Find 37 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGATAGCTGAACTGGTTTC+AGG | 0.198335 | 8_3:-17290426 | None:intergenic |
| AGTAAGGCTTTAAAATTTCT+TGG | 0.266953 | 8_3:+17289462 | Msa1279740:CDS |
| AGGTATGTCTTTGAAAGATT+TGG | 0.295699 | 8_3:-17290177 | None:intergenic |
| AGAGAATCAGTTCCATGTTT+TGG | 0.307421 | 8_3:+17289183 | Msa1279740:CDS |
| GGCTTTAAAATTTCTTGGTT+TGG | 0.308229 | 8_3:+17289467 | Msa1279740:CDS |
| AAAATTTAAATGCTAACTTT+TGG | 0.330093 | 8_3:-17290565 | None:intergenic |
| TCTCACCTATTGATCCTAGA+TGG | 0.331221 | 8_3:-17290227 | None:intergenic |
| TACAGTGGATTCTGCTAGTA+AGG | 0.383079 | 8_3:+17289446 | Msa1279740:CDS |
| TATTGCTTCAGAAATTAATC+AGG | 0.389954 | 8_3:+17289521 | Msa1279740:CDS |
| TGATTAATTTCTGAAGCAAT+AGG | 0.390281 | 8_3:-17289519 | None:intergenic |
| CTTACATCTGATAGCTGAAC+TGG | 0.391326 | 8_3:-17290433 | None:intergenic |
| ATGTTCCATCTAGGATCAAT+AGG | 0.432186 | 8_3:+17290222 | Msa1279740:CDS |
| AAAATTTCTTGGTTTGGTTG+AGG | 0.449963 | 8_3:+17289473 | Msa1279740:CDS |
| ATAACAGATTATTGTATGCC+AGG | 0.463952 | 8_3:+17289655 | Msa1279740:CDS |
| TTTGTTGAAATCAAAAGTTA+AGG | 0.471711 | 8_3:+17290471 | Msa1279740:CDS |
| AACAACCTATCAACATCAAA+AGG | 0.471937 | 8_3:+17290503 | Msa1279740:CDS |
| TTGTAATTGTATCAGATGTT+TGG | 0.481004 | 8_3:+17290381 | Msa1279740:intron |
| TCTGAGGACATTATCACAAC+AGG | 0.486527 | 8_3:-17290197 | None:intergenic |
| CAACATCAAAAGGAAGGGTA+TGG | 0.487124 | 8_3:+17290513 | Msa1279740:CDS |
| CCTCAGAGAATGTTCCATCT+AGG | 0.494035 | 8_3:+17290213 | Msa1279740:CDS |
| TATTGTATGCCAGGGATGAC+CGG | 0.500365 | 8_3:+17289664 | Msa1279740:CDS |
| TGTATCAGATGTTTGGAAGA+GGG | 0.502137 | 8_3:+17290388 | Msa1279740:intron |
| TTGTATCAGATGTTTGGAAG+AGG | 0.508259 | 8_3:+17290387 | Msa1279740:intron |
| TGAAGCAATAGGAGTGTCAT+AGG | 0.512512 | 8_3:-17289508 | None:intergenic |
| TTGATAGAATGTTGATTGAG+AGG | 0.516155 | 8_3:+17289224 | Msa1279740:CDS |
| AGATCATAGCCGGTCATCCC+TGG | 0.522997 | 8_3:-17289673 | None:intergenic |
| ACCTATCAACATCAAAAGGA+AGG | 0.530682 | 8_3:+17290507 | Msa1279740:CDS |
| TAACAGATTATTGTATGCCA+GGG | 0.564090 | 8_3:+17289656 | Msa1279740:CDS |
| TATCATCAACAGCCAAAACA+TGG | 0.580138 | 8_3:-17289195 | None:intergenic |
| TATCTTTCAAGTAATGGGCA+TGG | 0.581553 | 8_3:+17289156 | None:intergenic |
| GTCAATCACCAGATAAAACT+AGG | 0.591896 | 8_3:+17290542 | Msa1279740:CDS |
| GTATCAGATGTTTGGAAGAG+GGG | 0.607171 | 8_3:+17290389 | Msa1279740:intron |
| TATCAGATGTTTGGAAGAGG+GGG | 0.611980 | 8_3:+17290390 | Msa1279740:intron |
| TTGAAATACAGTTACTACAG+TGG | 0.620208 | 8_3:+17289431 | Msa1279740:intron |
| CCTATCAACATCAAAAGGAA+GGG | 0.630110 | 8_3:+17290508 | Msa1279740:CDS |
| GTTTGGTTGAGGATGAAATG+AGG | 0.636842 | 8_3:+17289484 | Msa1279740:CDS |
| CCTAGATGGAACATTCTCTG+AGG | 0.707424 | 8_3:-17290213 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACAAATTTATACAATAAAA+TGG | - | chr8_3:17289586-17289605 | None:intergenic | 10.0% |
| !! | TACAAATTTATACAATAAAA+TGG | - | chr8_3:17289586-17289605 | None:intergenic | 10.0% |
| !!! | ATTATTTTGCTTTTCTATTT+AGG | + | chr8_3:17289857-17289876 | Msa1279740:intron | 15.0% |
| !!! | GATTAGTTAATTGAAAATTT+GGG | - | chr8_3:17290024-17290043 | None:intergenic | 15.0% |
| !!! | AGATTAGTTAATTGAAAATT+TGG | - | chr8_3:17290025-17290044 | None:intergenic | 15.0% |
| !!! | ATTATTTTGCTTTTCTATTT+AGG | + | chr8_3:17289857-17289876 | Msa1279740:intron | 15.0% |
| !!! | GATTAGTTAATTGAAAATTT+GGG | - | chr8_3:17290024-17290043 | None:intergenic | 15.0% |
| !!! | AGATTAGTTAATTGAAAATT+TGG | - | chr8_3:17290025-17290044 | None:intergenic | 15.0% |
| !!! | ATAGTCTATTATTTTGTTGA+AGG | + | chr8_3:17289350-17289369 | Msa1279740:intron | 20.0% |
| !! | TACTGAATTGATAAAGATTA+TGG | + | chr8_3:17289554-17289573 | Msa1279740:intron | 20.0% |
| !! | TAGGAAACAATTTGAAAAAT+AGG | + | chr8_3:17289876-17289895 | Msa1279740:intron | 20.0% |
| !!! | GATCTTATTTCTTAAATACA+TGG | + | chr8_3:17289898-17289917 | Msa1279740:intron | 20.0% |
| !!! | AAATGCAAAGTCTTATATTA+TGG | + | chr8_3:17290322-17290341 | Msa1279740:intron | 20.0% |
| !!! | ACAATTACAAACAATTTGTT+AGG | - | chr8_3:17290371-17290390 | None:intergenic | 20.0% |
| !! | TTTGTTGAAATCAAAAGTTA+AGG | + | chr8_3:17290471-17290490 | Msa1279740:CDS | 20.0% |
| !!! | ATAGTCTATTATTTTGTTGA+AGG | + | chr8_3:17289350-17289369 | Msa1279740:intron | 20.0% |
| !! | TACTGAATTGATAAAGATTA+TGG | + | chr8_3:17289554-17289573 | Msa1279740:intron | 20.0% |
| !! | TAGGAAACAATTTGAAAAAT+AGG | + | chr8_3:17289876-17289895 | Msa1279740:intron | 20.0% |
| !!! | GATCTTATTTCTTAAATACA+TGG | + | chr8_3:17289898-17289917 | Msa1279740:intron | 20.0% |
| !!! | AAATGCAAAGTCTTATATTA+TGG | + | chr8_3:17290322-17290341 | Msa1279740:intron | 20.0% |
| !!! | ACAATTACAAACAATTTGTT+AGG | - | chr8_3:17290371-17290390 | None:intergenic | 20.0% |
| !! | TTTGTTGAAATCAAAAGTTA+AGG | + | chr8_3:17290471-17290490 | Msa1279740:CDS | 20.0% |
| !! | CATTAAAAGAAGAAGTTTTG+AGG | - | chr8_3:17289252-17289271 | None:intergenic | 25.0% |
| !! | CTCAAAACTTCTTCTTTTAA+TGG | + | chr8_3:17289250-17289269 | Msa1279740:CDS | 25.0% |
| !!! | TTTGTTGAAGGTGTTTTTTT+TGG | + | chr8_3:17289362-17289381 | Msa1279740:intron | 25.0% |
| !!! | AGTAAGGCTTTAAAATTTCT+TGG | + | chr8_3:17289462-17289481 | Msa1279740:CDS | 25.0% |
| !!! | TGATTAATTTCTGAAGCAAT+AGG | - | chr8_3:17289522-17289541 | None:intergenic | 25.0% |
| ! | TATTGCTTCAGAAATTAATC+AGG | + | chr8_3:17289521-17289540 | Msa1279740:CDS | 25.0% |
| ! | TTTGATTCAATTATTCATGC+AGG | + | chr8_3:17289612-17289631 | Msa1279740:intron | 25.0% |
| ! | TAGACTAATCAAATAAGAAG+TGG | - | chr8_3:17289761-17289780 | None:intergenic | 25.0% |
| ! | TTGAATGCATCAAAAAAGTT+TGG | + | chr8_3:17289830-17289849 | Msa1279740:intron | 25.0% |
| ! | ATCAATTCTCACAATTGATT+TGG | + | chr8_3:17289991-17290010 | Msa1279740:intron | 25.0% |
| ! | ATACTAGATTAATCGTGTTA+TGG | - | chr8_3:17290263-17290282 | None:intergenic | 25.0% |
| ! | TTGTAATTGTATCAGATGTT+TGG | + | chr8_3:17290381-17290400 | Msa1279740:intron | 25.0% |
| !!! | ACTTTTGATTTCAACAAATG+TGG | - | chr8_3:17290469-17290488 | None:intergenic | 25.0% |
| !! | CATTAAAAGAAGAAGTTTTG+AGG | - | chr8_3:17289252-17289271 | None:intergenic | 25.0% |
| !! | CTCAAAACTTCTTCTTTTAA+TGG | + | chr8_3:17289250-17289269 | Msa1279740:CDS | 25.0% |
| !!! | TTTGTTGAAGGTGTTTTTTT+TGG | + | chr8_3:17289362-17289381 | Msa1279740:intron | 25.0% |
| !!! | AGTAAGGCTTTAAAATTTCT+TGG | + | chr8_3:17289462-17289481 | Msa1279740:CDS | 25.0% |
| !!! | TGATTAATTTCTGAAGCAAT+AGG | - | chr8_3:17289522-17289541 | None:intergenic | 25.0% |
| ! | TATTGCTTCAGAAATTAATC+AGG | + | chr8_3:17289521-17289540 | Msa1279740:CDS | 25.0% |
| ! | TTTGATTCAATTATTCATGC+AGG | + | chr8_3:17289612-17289631 | Msa1279740:intron | 25.0% |
| ! | TAGACTAATCAAATAAGAAG+TGG | - | chr8_3:17289761-17289780 | None:intergenic | 25.0% |
| ! | TTGAATGCATCAAAAAAGTT+TGG | + | chr8_3:17289830-17289849 | Msa1279740:intron | 25.0% |
| ! | ATCAATTCTCACAATTGATT+TGG | + | chr8_3:17289991-17290010 | Msa1279740:intron | 25.0% |
| ! | ATACTAGATTAATCGTGTTA+TGG | - | chr8_3:17290263-17290282 | None:intergenic | 25.0% |
| ! | TTGTAATTGTATCAGATGTT+TGG | + | chr8_3:17290381-17290400 | Msa1279740:intron | 25.0% |
| !!! | ACTTTTGATTTCAACAAATG+TGG | - | chr8_3:17290469-17290488 | None:intergenic | 25.0% |
| ! | TTGATAGAATGTTGATTGAG+AGG | + | chr8_3:17289224-17289243 | Msa1279740:CDS | 30.0% |
| TTGAAATACAGTTACTACAG+TGG | + | chr8_3:17289431-17289450 | Msa1279740:intron | 30.0% | |
| !! | GGCTTTAAAATTTCTTGGTT+TGG | + | chr8_3:17289467-17289486 | Msa1279740:CDS | 30.0% |
| !! | AAAATTTCTTGGTTTGGTTG+AGG | + | chr8_3:17289473-17289492 | Msa1279740:CDS | 30.0% |
| ATAACAGATTATTGTATGCC+AGG | + | chr8_3:17289655-17289674 | Msa1279740:CDS | 30.0% | |
| TAACAGATTATTGTATGCCA+GGG | + | chr8_3:17289656-17289675 | Msa1279740:CDS | 30.0% | |
| TGATCTGTTGAGAAAAATCA+AGG | + | chr8_3:17289690-17289709 | Msa1279740:CDS | 30.0% | |
| CAAAAGTAAGCACAAAATTG+TGG | - | chr8_3:17289806-17289825 | None:intergenic | 30.0% | |
| TCTCAATCCAAAATTGTTCA+TGG | + | chr8_3:17290042-17290061 | Msa1279740:intron | 30.0% | |
| ! | ATGCTTTCCATGAACAATTT+TGG | - | chr8_3:17290052-17290071 | None:intergenic | 30.0% |
| AATAAAGTTCATTGATCTGC+AGG | + | chr8_3:17290151-17290170 | Msa1279740:intron | 30.0% | |
| ! | AGGTATGTCTTTGAAAGATT+TGG | - | chr8_3:17290180-17290199 | None:intergenic | 30.0% |
| AACAACCTATCAACATCAAA+AGG | + | chr8_3:17290503-17290522 | Msa1279740:CDS | 30.0% | |
| ! | TTGATAGAATGTTGATTGAG+AGG | + | chr8_3:17289224-17289243 | Msa1279740:CDS | 30.0% |
| TTGAAATACAGTTACTACAG+TGG | + | chr8_3:17289431-17289450 | Msa1279740:intron | 30.0% | |
| !! | GGCTTTAAAATTTCTTGGTT+TGG | + | chr8_3:17289467-17289486 | Msa1279740:CDS | 30.0% |
| !! | AAAATTTCTTGGTTTGGTTG+AGG | + | chr8_3:17289473-17289492 | Msa1279740:CDS | 30.0% |
| ATAACAGATTATTGTATGCC+AGG | + | chr8_3:17289655-17289674 | Msa1279740:CDS | 30.0% | |
| TAACAGATTATTGTATGCCA+GGG | + | chr8_3:17289656-17289675 | Msa1279740:CDS | 30.0% | |
| TGATCTGTTGAGAAAAATCA+AGG | + | chr8_3:17289690-17289709 | Msa1279740:CDS | 30.0% | |
| CAAAAGTAAGCACAAAATTG+TGG | - | chr8_3:17289806-17289825 | None:intergenic | 30.0% | |
| TCTCAATCCAAAATTGTTCA+TGG | + | chr8_3:17290042-17290061 | Msa1279740:intron | 30.0% | |
| ! | ATGCTTTCCATGAACAATTT+TGG | - | chr8_3:17290052-17290071 | None:intergenic | 30.0% |
| AATAAAGTTCATTGATCTGC+AGG | + | chr8_3:17290151-17290170 | Msa1279740:intron | 30.0% | |
| ! | AGGTATGTCTTTGAAAGATT+TGG | - | chr8_3:17290180-17290199 | None:intergenic | 30.0% |
| AACAACCTATCAACATCAAA+AGG | + | chr8_3:17290503-17290522 | Msa1279740:CDS | 30.0% | |
| ! | AGAGAATCAGTTCCATGTTT+TGG | + | chr8_3:17289183-17289202 | Msa1279740:CDS | 35.0% |
| TATCATCAACAGCCAAAACA+TGG | - | chr8_3:17289198-17289217 | None:intergenic | 35.0% | |
| ! | TTTTCTCAACAGATCATAGC+CGG | - | chr8_3:17289686-17289705 | None:intergenic | 35.0% |
| CTGTTGAGAAAAATCAAGGT+AGG | + | chr8_3:17289694-17289713 | Msa1279740:intron | 35.0% | |
| ! | ATGTTCCATCTAGGATCAAT+AGG | + | chr8_3:17290222-17290241 | Msa1279740:CDS | 35.0% |
| TTGTATCAGATGTTTGGAAG+AGG | + | chr8_3:17290387-17290406 | Msa1279740:intron | 35.0% | |
| TGTATCAGATGTTTGGAAGA+GGG | + | chr8_3:17290388-17290407 | Msa1279740:intron | 35.0% | |
| ACCTATCAACATCAAAAGGA+AGG | + | chr8_3:17290507-17290526 | Msa1279740:CDS | 35.0% | |
| CCTATCAACATCAAAAGGAA+GGG | + | chr8_3:17290508-17290527 | Msa1279740:CDS | 35.0% | |
| GTCAATCACCAGATAAAACT+AGG | + | chr8_3:17290542-17290561 | Msa1279740:CDS | 35.0% | |
| !!! | ACTTTTGGCCTAGTTTTATC+TGG | - | chr8_3:17290553-17290572 | None:intergenic | 35.0% |
| ! | AGAGAATCAGTTCCATGTTT+TGG | + | chr8_3:17289183-17289202 | Msa1279740:CDS | 35.0% |
| TATCATCAACAGCCAAAACA+TGG | - | chr8_3:17289198-17289217 | None:intergenic | 35.0% | |
| ! | TTTTCTCAACAGATCATAGC+CGG | - | chr8_3:17289686-17289705 | None:intergenic | 35.0% |
| CTGTTGAGAAAAATCAAGGT+AGG | + | chr8_3:17289694-17289713 | Msa1279740:intron | 35.0% | |
| ! | ATGTTCCATCTAGGATCAAT+AGG | + | chr8_3:17290222-17290241 | Msa1279740:CDS | 35.0% |
| TTGTATCAGATGTTTGGAAG+AGG | + | chr8_3:17290387-17290406 | Msa1279740:intron | 35.0% | |
| TGTATCAGATGTTTGGAAGA+GGG | + | chr8_3:17290388-17290407 | Msa1279740:intron | 35.0% | |
| ACCTATCAACATCAAAAGGA+AGG | + | chr8_3:17290507-17290526 | Msa1279740:CDS | 35.0% | |
| CCTATCAACATCAAAAGGAA+GGG | + | chr8_3:17290508-17290527 | Msa1279740:CDS | 35.0% | |
| GTCAATCACCAGATAAAACT+AGG | + | chr8_3:17290542-17290561 | Msa1279740:CDS | 35.0% | |
| !!! | ACTTTTGGCCTAGTTTTATC+TGG | - | chr8_3:17290553-17290572 | None:intergenic | 35.0% |
| ! | TACAGTGGATTCTGCTAGTA+AGG | + | chr8_3:17289446-17289465 | Msa1279740:CDS | 40.0% |
| GTTTGGTTGAGGATGAAATG+AGG | + | chr8_3:17289484-17289503 | Msa1279740:CDS | 40.0% | |
| !! | TGAAGCAATAGGAGTGTCAT+AGG | - | chr8_3:17289511-17289530 | None:intergenic | 40.0% |
| TCTGAGGACATTATCACAAC+AGG | - | chr8_3:17290200-17290219 | None:intergenic | 40.0% | |
| TCTCACCTATTGATCCTAGA+TGG | - | chr8_3:17290230-17290249 | None:intergenic | 40.0% | |
| GTATCAGATGTTTGGAAGAG+GGG | + | chr8_3:17290389-17290408 | Msa1279740:intron | 40.0% | |
| TATCAGATGTTTGGAAGAGG+GGG | + | chr8_3:17290390-17290409 | Msa1279740:intron | 40.0% | |
| CTTACATCTGATAGCTGAAC+TGG | - | chr8_3:17290436-17290455 | None:intergenic | 40.0% | |
| ! | CCCTTCCTTTTGATGTTGAT+AGG | - | chr8_3:17290511-17290530 | None:intergenic | 40.0% |
| CAACATCAAAAGGAAGGGTA+TGG | + | chr8_3:17290513-17290532 | Msa1279740:CDS | 40.0% | |
| ! | TACAGTGGATTCTGCTAGTA+AGG | + | chr8_3:17289446-17289465 | Msa1279740:CDS | 40.0% |
| GTTTGGTTGAGGATGAAATG+AGG | + | chr8_3:17289484-17289503 | Msa1279740:CDS | 40.0% | |
| !! | TGAAGCAATAGGAGTGTCAT+AGG | - | chr8_3:17289511-17289530 | None:intergenic | 40.0% |
| TCTGAGGACATTATCACAAC+AGG | - | chr8_3:17290200-17290219 | None:intergenic | 40.0% | |
| TCTCACCTATTGATCCTAGA+TGG | - | chr8_3:17290230-17290249 | None:intergenic | 40.0% | |
| GTATCAGATGTTTGGAAGAG+GGG | + | chr8_3:17290389-17290408 | Msa1279740:intron | 40.0% | |
| TATCAGATGTTTGGAAGAGG+GGG | + | chr8_3:17290390-17290409 | Msa1279740:intron | 40.0% | |
| CTTACATCTGATAGCTGAAC+TGG | - | chr8_3:17290436-17290455 | None:intergenic | 40.0% | |
| ! | CCCTTCCTTTTGATGTTGAT+AGG | - | chr8_3:17290511-17290530 | None:intergenic | 40.0% |
| CAACATCAAAAGGAAGGGTA+TGG | + | chr8_3:17290513-17290532 | Msa1279740:CDS | 40.0% | |
| TATTGTATGCCAGGGATGAC+CGG | + | chr8_3:17289664-17289683 | Msa1279740:CDS | 45.0% | |
| CCTAGATGGAACATTCTCTG+AGG | - | chr8_3:17290216-17290235 | None:intergenic | 45.0% | |
| CCTCAGAGAATGTTCCATCT+AGG | + | chr8_3:17290213-17290232 | Msa1279740:CDS | 45.0% | |
| ! | CTGATAGCTGAACTGGTTTC+AGG | - | chr8_3:17290429-17290448 | None:intergenic | 45.0% |
| TATTGTATGCCAGGGATGAC+CGG | + | chr8_3:17289664-17289683 | Msa1279740:CDS | 45.0% | |
| CCTAGATGGAACATTCTCTG+AGG | - | chr8_3:17290216-17290235 | None:intergenic | 45.0% | |
| CCTCAGAGAATGTTCCATCT+AGG | + | chr8_3:17290213-17290232 | Msa1279740:CDS | 45.0% | |
| ! | CTGATAGCTGAACTGGTTTC+AGG | - | chr8_3:17290429-17290448 | None:intergenic | 45.0% |
| AGATCATAGCCGGTCATCCC+TGG | - | chr8_3:17289676-17289695 | None:intergenic | 55.0% | |
| AGATCATAGCCGGTCATCCC+TGG | - | chr8_3:17289676-17289695 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 17289169 | 17290582 | 17289169 | ID=Msa1279740;Name=Msa1279740 |
| chr8_3 | mRNA | 17289169 | 17290582 | 17289169 | ID=Msa1279740-mRNA-1;Parent=Msa1279740;Name=Msa1279740-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0|1|1|1|5|0|179 |
| chr8_3 | exon | 17289169 | 17289271 | 17289169 | ID=Msa1279740-mRNA-1:exon:6656;Parent=Msa1279740-mRNA-1 |
| chr8_3 | exon | 17289442 | 17289542 | 17289442 | ID=Msa1279740-mRNA-1:exon:6657;Parent=Msa1279740-mRNA-1 |
| chr8_3 | exon | 17289634 | 17289711 | 17289634 | ID=Msa1279740-mRNA-1:exon:6658;Parent=Msa1279740-mRNA-1 |
| chr8_3 | exon | 17290173 | 17290243 | 17290173 | ID=Msa1279740-mRNA-1:exon:6659;Parent=Msa1279740-mRNA-1 |
| chr8_3 | exon | 17290396 | 17290582 | 17290396 | ID=Msa1279740-mRNA-1:exon:6660;Parent=Msa1279740-mRNA-1 |
| chr8_3 | CDS | 17289169 | 17289271 | 17289169 | ID=Msa1279740-mRNA-1:cds;Parent=Msa1279740-mRNA-1 |
| chr8_3 | CDS | 17289442 | 17289542 | 17289442 | ID=Msa1279740-mRNA-1:cds;Parent=Msa1279740-mRNA-1 |
| chr8_3 | CDS | 17289634 | 17289711 | 17289634 | ID=Msa1279740-mRNA-1:cds;Parent=Msa1279740-mRNA-1 |
| chr8_3 | CDS | 17290173 | 17290243 | 17290173 | ID=Msa1279740-mRNA-1:cds;Parent=Msa1279740-mRNA-1 |
| chr8_3 | CDS | 17290396 | 17290582 | 17290396 | ID=Msa1279740-mRNA-1:cds;Parent=Msa1279740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
