AlfalfaGEDB | Msa1279740

M. sativa cultivar zhongmu-4 / Msa1279740

KEGG: K14492
GO: GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00072.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1279740	XP_003627814.1	96.648	179	4	1	1	179	1	177	9.22e-121	348

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1279740	sp\|Q2RAP3\|ORR9_ORYSJ	70.807	161	42	2	1	160	1	157	8.87e-76	228

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1279740	Q1RU46	96.648	179	4	1	1	179	1	177	4.40e-121	348

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TFs/TRs:

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Gene ID	Type	Classification
Msa1279740	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1279740	MtrunA17_Chr8g0352871	96.648	179	4	1	1	179	1	177	8.48e-125	348
Msa1279740	MtrunA17_Chr3g0082861	81.529	157	25	3	8	162	3	157	3.54e-85	248
Msa1279740	MtrunA17_Chr7g0256551	73.077	156	41	1	1	155	1	156	1.19e-81	241
Msa1279740	MtrunA17_Chr3g0124861	58.125	160	56	2	6	155	19	177	4.26e-59	184
Msa1279740	MtrunA17_Chr4g0059571	54.762	168	64	3	4	170	21	177	8.96e-54	170
Msa1279740	MtrunA17_Chr5g0414931	58.451	142	55	1	8	149	15	152	6.82e-53	168
Msa1279740	MtrunA17_Chr1g0170741	59.859	142	52	2	8	149	7	143	3.93e-51	162
Msa1279740	MtrunA17_Chr3g0118211	52.174	161	60	3	4	156	18	169	7.92e-51	162
Msa1279740	MtrunA17_Chr4g0021731	82.609	92	8	1	3	94	5	88	1.08e-48	153
Msa1279740	MtrunA17_Chr3g0128691	57.246	138	49	3	10	145	19	148	1.35e-48	155

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1279740	AT2G41310.1	53.456	217	60	1	1	176	1	217	2.31e-75	225
Msa1279740	AT3G57040.2	65.868	167	49	2	1	162	1	164	6.86e-74	222
Msa1279740	AT3G57040.1	65.868	167	49	2	1	162	1	164	6.86e-74	222
Msa1279740	AT1G59940.1	61.429	140	46	2	7	146	31	162	1.06e-55	176
Msa1279740	AT1G59940.2	61.429	140	46	2	7	146	123	254	6.39e-54	174
Msa1279740	AT1G10470.3	60.000	140	48	1	7	146	18	149	9.25e-54	171
Msa1279740	AT1G10470.1	60.000	140	48	1	7	146	32	163	1.00e-53	171
Msa1279740	AT3G48100.1	56.757	148	55	2	2	148	18	157	1.24e-53	169
Msa1279740	AT5G62920.1	60.432	139	45	2	9	146	25	154	1.37e-52	166
Msa1279740	AT1G19050.1	53.548	155	64	1	8	162	23	169	4.07e-52	166

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Find 37 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTAAATGCTAACTTT+TGG	0.330093	8_3:-17290565	None:intergenic
AAAATTTCTTGGTTTGGTTG+AGG	0.449963	8_3:+17289473	Msa1279740:CDS
AACAACCTATCAACATCAAA+AGG	0.471937	8_3:+17290503	Msa1279740:CDS
ACCTATCAACATCAAAAGGA+AGG	0.530682	8_3:+17290507	Msa1279740:CDS
AGAGAATCAGTTCCATGTTT+TGG	0.307421	8_3:+17289183	Msa1279740:CDS
AGATCATAGCCGGTCATCCC+TGG	0.522997	8_3:-17289673	None:intergenic
AGGTATGTCTTTGAAAGATT+TGG	0.295699	8_3:-17290177	None:intergenic
AGTAAGGCTTTAAAATTTCT+TGG	0.266953	8_3:+17289462	Msa1279740:CDS
ATAACAGATTATTGTATGCC+AGG	0.463952	8_3:+17289655	Msa1279740:CDS
ATGTTCCATCTAGGATCAAT+AGG	0.432186	8_3:+17290222	Msa1279740:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGAAATACAGTTACTACAG+TGG	+	chr8_3:17289431-17289450	Msa1279740:intron	30.0%
ATAACAGATTATTGTATGCC+AGG	+	chr8_3:17289655-17289674	Msa1279740:CDS	30.0%
TAACAGATTATTGTATGCCA+GGG	+	chr8_3:17289656-17289675	Msa1279740:CDS	30.0%
TGATCTGTTGAGAAAAATCA+AGG	+	chr8_3:17289690-17289709	Msa1279740:CDS	30.0%
CAAAAGTAAGCACAAAATTG+TGG	-	chr8_3:17289806-17289825	None:intergenic	30.0%
TCTCAATCCAAAATTGTTCA+TGG	+	chr8_3:17290042-17290061	Msa1279740:intron	30.0%
AATAAAGTTCATTGATCTGC+AGG	+	chr8_3:17290151-17290170	Msa1279740:intron	30.0%
AACAACCTATCAACATCAAA+AGG	+	chr8_3:17290503-17290522	Msa1279740:CDS	30.0%
TTGAAATACAGTTACTACAG+TGG	+	chr8_3:17289431-17289450	Msa1279740:intron	30.0%
ATAACAGATTATTGTATGCC+AGG	+	chr8_3:17289655-17289674	Msa1279740:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	17289169	17290582	17289169	ID=Msa1279740;Name=Msa1279740
chr8_3	mRNA	17289169	17290582	17289169	ID=Msa1279740-mRNA-1;Parent=Msa1279740;Name=Msa1279740-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0\|0\|0\|1\|1\|1\|5\|0\|179
chr8_3	exon	17289169	17289271	17289169	ID=Msa1279740-mRNA-1:exon:6656;Parent=Msa1279740-mRNA-1
chr8_3	exon	17289442	17289542	17289442	ID=Msa1279740-mRNA-1:exon:6657;Parent=Msa1279740-mRNA-1
chr8_3	exon	17289634	17289711	17289634	ID=Msa1279740-mRNA-1:exon:6658;Parent=Msa1279740-mRNA-1
chr8_3	exon	17290173	17290243	17290173	ID=Msa1279740-mRNA-1:exon:6659;Parent=Msa1279740-mRNA-1
chr8_3	exon	17290396	17290582	17290396	ID=Msa1279740-mRNA-1:exon:6660;Parent=Msa1279740-mRNA-1
chr8_3	CDS	17289169	17289271	17289169	ID=Msa1279740-mRNA-1:cds;Parent=Msa1279740-mRNA-1
chr8_3	CDS	17289442	17289542	17289442	ID=Msa1279740-mRNA-1:cds;Parent=Msa1279740-mRNA-1
chr8_3	CDS	17289634	17289711	17289634	ID=Msa1279740-mRNA-1:cds;Parent=Msa1279740-mRNA-1
chr8_3	CDS	17290173	17290243	17290173	ID=Msa1279740-mRNA-1:cds;Parent=Msa1279740-mRNA-1
chr8_3	CDS	17290396	17290582	17290396	ID=Msa1279740-mRNA-1:cds;Parent=Msa1279740-mRNA-1

Gene Sequence

>Msa1279740

ATGGGCATGGCTGCAGAGAATCAGTTCCATGTTTTGGCTGTTGATGATAGTATTATTGATAGAATGTTGATTGAGAGGCTCCTCAAAACTTCTTCTTTTAATGTTACTACAGTGGATTCTGCTAGTAAGGCTTTAAAATTTCTTGGTTTGGTTGAGGATGAAATGAGGACCTATGACACTCCTATTGCTTCAGAAATTAATCAGGATGTAGATGTGAATCTGATCATAACAGATTATTGTATGCCAGGGATGACCGGCTATGATCTGTTGAGAAAAATCAAGGAATCCAAATCTTTCAAAGACATACCTGTTGTGATAATGTCCTCAGAGAATGTTCCATCTAGGATCAATAGATGTTTGGAAGAGGGGGCTGAAGAATTTTTCCTGAAACCAGTTCAGCTATCAGATGTAAGCAAGCTGAAGCCACATTTGTTGAAATCAAAAGTTAAGGAAGAGAAAGAACAACCTATCAACATCAAAAGGAAGGGTATGGAAGAAAGTCAATCACCAGATAAAACTAGGCCAAAAGTTAGCATTTAA

Protein sequence

>Msa1279740

MGMAAENQFHVLAVDDSIIDRMLIERLLKTSSFNVTTVDSASKALKFLGLVEDEMRTYDTPIASEINQDVDVNLIITDYCMPGMTGYDLLRKIKESKSFKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQLSDVSKLKPHLLKSKVKEEKEQPINIKRKGMEESQSPDKTRPKVSI*