Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1280480 | sp|Q9ZWJ9|ARR2_ARATH | 30.909 | 275 | 161 | 9 | 20 | 285 | 26 | 280 | 1.64e-27 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1280480 | A0A072TZK7 | 90.984 | 488 | 32 | 3 | 1 | 488 | 1 | 476 | 0.0 | 905 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1280480 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1280480 | MtrunA17_Chr8g0350761 | 90.984 | 488 | 32 | 3 | 1 | 488 | 1 | 476 | 0.0 | 905 |
| Msa1280480 | MtrunA17_Chr4g0067981 | 32.593 | 270 | 159 | 6 | 20 | 287 | 33 | 281 | 2.38e-29 | 122 |
| Msa1280480 | MtrunA17_Chr7g0275401 | 28.114 | 281 | 183 | 6 | 21 | 299 | 8 | 271 | 2.25e-28 | 114 |
| Msa1280480 | MtrunA17_Chr3g0123131 | 32.422 | 256 | 151 | 8 | 20 | 272 | 15 | 251 | 5.40e-28 | 117 |
| Msa1280480 | MtrunA17_Chr1g0161431 | 29.615 | 260 | 156 | 4 | 20 | 272 | 13 | 252 | 3.64e-27 | 115 |
| Msa1280480 | MtrunA17_Chr8g0376881 | 30.315 | 254 | 157 | 7 | 20 | 272 | 27 | 261 | 1.56e-26 | 112 |
| Msa1280480 | MtrunA17_Chr3g0137101 | 29.688 | 256 | 160 | 7 | 21 | 272 | 11 | 250 | 8.32e-26 | 111 |
| Msa1280480 | MtrunA17_Chr2g0294911 | 28.996 | 269 | 169 | 5 | 20 | 287 | 31 | 278 | 1.01e-25 | 110 |
| Msa1280480 | MtrunA17_Chr4g0074401 | 30.233 | 258 | 160 | 7 | 20 | 275 | 19 | 258 | 3.72e-24 | 105 |
| Msa1280480 | MtrunA17_Chr2g0304841 | 27.692 | 260 | 165 | 6 | 21 | 272 | 21 | 265 | 5.28e-24 | 105 |
| Msa1280480 | MtrunA17_Chr4g0074411 | 27.692 | 260 | 159 | 6 | 21 | 275 | 21 | 256 | 7.45e-24 | 105 |
| Msa1280480 | MtrunA17_Chr1g0149841 | 30.435 | 253 | 158 | 6 | 21 | 272 | 8 | 243 | 1.56e-23 | 103 |
| Msa1280480 | MtrunA17_Chr7g0275891 | 25.347 | 288 | 180 | 6 | 21 | 292 | 8 | 276 | 6.71e-22 | 97.1 |
| Msa1280480 | MtrunA17_Chr4g0009851 | 27.273 | 253 | 138 | 5 | 21 | 272 | 14 | 221 | 4.90e-21 | 93.6 |
| Msa1280480 | MtrunA17_Chr1g0149851 | 27.957 | 279 | 168 | 4 | 21 | 283 | 8 | 269 | 3.97e-20 | 93.6 |
| Msa1280480 | MtrunA17_Chr4g0009901 | 26.038 | 265 | 148 | 9 | 20 | 283 | 12 | 229 | 4.53e-18 | 84.3 |
| Msa1280480 | MtrunA17_Chr4g0074421 | 28.571 | 203 | 120 | 6 | 69 | 269 | 3 | 182 | 7.39e-18 | 82.0 |
| Msa1280480 | MtrunA17_Chr8g0391911 | 23.529 | 272 | 146 | 6 | 20 | 269 | 11 | 242 | 8.50e-13 | 68.6 |
| Msa1280480 | MtrunA17_Chr3g0134481 | 31.148 | 122 | 83 | 1 | 21 | 142 | 11 | 131 | 1.76e-12 | 66.2 |
| Msa1280480 | MtrunA17_Chr6g0456631 | 33.607 | 122 | 77 | 3 | 20 | 139 | 11 | 130 | 4.69e-12 | 64.3 |
| Msa1280480 | MtrunA17_Chr8g0383961 | 32.258 | 124 | 80 | 2 | 22 | 142 | 18 | 140 | 1.63e-11 | 64.7 |
| Msa1280480 | MtrunA17_Chr7g0256551 | 35.338 | 133 | 62 | 5 | 24 | 134 | 11 | 141 | 2.31e-11 | 63.9 |
| Msa1280480 | MtrunA17_Chr4g0030271 | 30.469 | 128 | 84 | 3 | 18 | 142 | 85 | 210 | 5.19e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1280480 | AT3G16857.1 | 28.223 | 287 | 165 | 7 | 20 | 285 | 35 | 301 | 3.51e-26 | 112 |
| Msa1280480 | AT3G16857.2 | 28.223 | 287 | 165 | 7 | 20 | 285 | 35 | 301 | 4.05e-26 | 112 |
| Msa1280480 | AT2G01760.1 | 27.619 | 315 | 182 | 11 | 20 | 319 | 9 | 292 | 6.20e-24 | 103 |
| Msa1280480 | AT1G67710.1 | 29.811 | 265 | 147 | 8 | 20 | 272 | 9 | 246 | 1.40e-23 | 104 |
| Msa1280480 | AT2G25180.1 | 28.794 | 257 | 153 | 4 | 21 | 272 | 16 | 247 | 1.56e-23 | 104 |
| Msa1280480 | AT4G31920.1 | 27.734 | 256 | 151 | 4 | 21 | 275 | 16 | 238 | 3.55e-23 | 103 |
| Msa1280480 | AT5G58080.1 | 28.625 | 269 | 167 | 9 | 5 | 272 | 2 | 246 | 5.16e-22 | 100 |
| Msa1280480 | AT1G49190.1 | 25.899 | 278 | 167 | 10 | 20 | 285 | 32 | 282 | 4.19e-19 | 89.7 |
| Msa1280480 | AT2G01760.2 | 25.364 | 343 | 182 | 12 | 20 | 319 | 9 | 320 | 9.61e-19 | 88.6 |
| Msa1280480 | AT3G16857.3 | 26.800 | 250 | 142 | 7 | 57 | 285 | 2 | 231 | 1.18e-18 | 89.4 |
| Msa1280480 | AT5G07210.2 | 26.838 | 272 | 171 | 9 | 19 | 272 | 13 | 274 | 1.60e-17 | 85.9 |
| Msa1280480 | AT5G49240.1 | 22.727 | 264 | 157 | 6 | 21 | 269 | 41 | 272 | 9.17e-16 | 78.2 |
| Msa1280480 | AT3G62670.1 | 25.373 | 268 | 163 | 7 | 23 | 283 | 42 | 279 | 2.26e-15 | 78.6 |
| Msa1280480 | AT5G07210.1 | 27.500 | 280 | 167 | 12 | 19 | 272 | 13 | 282 | 2.67e-15 | 79.0 |
| Msa1280480 | AT2G40970.1 | 34.074 | 135 | 72 | 3 | 219 | 351 | 103 | 222 | 1.48e-12 | 68.2 |
| Msa1280480 | AT2G27070.1 | 26.182 | 275 | 172 | 10 | 19 | 272 | 13 | 277 | 2.15e-12 | 69.7 |
| Msa1280480 | AT1G67710.2 | 27.404 | 208 | 112 | 8 | 77 | 272 | 1 | 181 | 8.50e-11 | 64.3 |
Find 110 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTAGACCAATTTCATTT+TGG | 0.212757 | 8_3:-19120691 | None:intergenic |
| ATATCACGGGCTCTTGGTTT+TGG | 0.233266 | 8_3:+19120476 | Msa1280480:CDS |
| GAGTGCCTCAAACTATTTAC+AGG | 0.272286 | 8_3:+19121024 | Msa1280480:CDS |
| ATTCTTCTTCTCACAGATAA+TGG | 0.274227 | 8_3:-19120221 | None:intergenic |
| TGATTTACATATGAAGTTCT+TGG | 0.275930 | 8_3:+19120832 | Msa1280480:CDS |
| GTTGTCCGGAGTCACCTTTC+CGG | 0.292403 | 8_3:+19121580 | Msa1280480:CDS |
| ATAGTTTGAGGCACTCTCTT+TGG | 0.318103 | 8_3:-19121017 | None:intergenic |
| CGGTCTCGCCAAAATGAAAT+TGG | 0.341694 | 8_3:+19120683 | Msa1280480:CDS |
| AAAACCAAGAGCCCGTGATA+TGG | 0.366143 | 8_3:-19120474 | None:intergenic |
| AGATCCTTCGGATCGGCATC+TGG | 0.369128 | 8_3:-19121492 | None:intergenic |
| ACCCTTCCACATTCATAATC+TGG | 0.374739 | 8_3:-19120991 | None:intergenic |
| TATATCATTGTGCGTGCGCT+CGG | 0.375322 | 8_3:+19121949 | Msa1280480:CDS |
| TGGCTTTCTAAAACACCATT+TGG | 0.375414 | 8_3:-19120501 | None:intergenic |
| CTTCTTTCACTTGGATATGA+AGG | 0.378032 | 8_3:+19119769 | Msa1280480:CDS |
| CTCCTGCATTCAAGGATGGT+TGG | 0.379367 | 8_3:-19120715 | None:intergenic |
| AGTACTGAGGTATCATTATC+AGG | 0.388121 | 8_3:-19120779 | None:intergenic |
| CAGTGACTGCTGTTTCATAT+CGG | 0.390194 | 8_3:-19120571 | None:intergenic |
| ATGGAAATATATGAGCTCAT+AGG | 0.396087 | 8_3:+19120283 | Msa1280480:CDS |
| CACGCACAATGATATATTAC+TGG | 0.397475 | 8_3:-19121942 | None:intergenic |
| TCCTCAGCTTCGCCGCTGAC+TGG | 0.399441 | 8_3:-19119666 | None:intergenic |
| AGCTCATATATTTCCATGTC+TGG | 0.401653 | 8_3:-19120277 | None:intergenic |
| TTTCTGATCTACATGACCTT+TGG | 0.412759 | 8_3:+19120531 | Msa1280480:CDS |
| CAAAATGAAATTGGTCTAGA+AGG | 0.418166 | 8_3:+19120692 | Msa1280480:CDS |
| GTGTCTGTCAGATGTGATTA+TGG | 0.420255 | 8_3:+19120616 | Msa1280480:CDS |
| ATACCTCAGTACTCCTGAAC+AGG | 0.429117 | 8_3:+19120789 | Msa1280480:CDS |
| GACTTTGCTGTTCCAATGGC+AGG | 0.429908 | 8_3:-19121617 | None:intergenic |
| CCTTCCATATCACGGGCTCT+TGG | 0.439741 | 8_3:+19120470 | Msa1280480:CDS |
| CTTGGAAAGCTCAAGTTGTC+CGG | 0.445175 | 8_3:+19121566 | Msa1280480:CDS |
| AGACCGTTCTCCTGTATTCA+TGG | 0.452019 | 8_3:-19120666 | None:intergenic |
| ATAATCTGGAATATTGTCTT+CGG | 0.459039 | 8_3:-19120977 | None:intergenic |
| CAGTACTCCTGAACAGGAAA+AGG | 0.460473 | 8_3:+19120795 | Msa1280480:CDS |
| GTTGGTTGTGGATGCTAGTT+CGG | 0.466592 | 8_3:+19119720 | Msa1280480:CDS |
| TTGGAAGCTGTTGAAATAGC+AGG | 0.471879 | 8_3:+19120851 | Msa1280480:CDS |
| AAATCAGCTGTCCCTGCCAT+TGG | 0.472311 | 8_3:+19121605 | Msa1280480:CDS |
| TGAACAGGAAAAGGAAAAGC+TGG | 0.472904 | 8_3:+19120804 | Msa1280480:CDS |
| TGGAAATATATGAGCTCATA+GGG | 0.478056 | 8_3:+19120284 | Msa1280480:CDS |
| AAGTGCAAATGGTAAAGAAC+AGG | 0.480421 | 8_3:+19120751 | Msa1280480:CDS |
| ATATCATTGTGCGTGCGCTC+GGG | 0.484893 | 8_3:+19121950 | Msa1280480:CDS |
| TGTAGATCAGAAATCTGAAC+TGG | 0.485157 | 8_3:-19120521 | None:intergenic |
| TCCAGTCAGCGGCGAAGCTG+AGG | 0.492869 | 8_3:+19119665 | Msa1280480:CDS |
| AAGACTCTCCGAAGTGCAAA+TGG | 0.496589 | 8_3:+19120740 | Msa1280480:CDS |
| CTCCTGTATTCATGGATGGT+TGG | 0.498946 | 8_3:-19120658 | None:intergenic |
| TGCCAACCATCCATGAATAC+AGG | 0.500767 | 8_3:+19120656 | Msa1280480:CDS |
| ACAAACCTGTAAATAGTTTG+AGG | 0.502869 | 8_3:-19121029 | None:intergenic |
| CATCTGCTGTATTCAAAACC+TGG | 0.512978 | 8_3:-19121710 | None:intergenic |
| CGTTCTCCTGTATTCATGGA+TGG | 0.519997 | 8_3:-19120662 | None:intergenic |
| TCTGGTGGTAGTGGCGGCAT+AGG | 0.521933 | 8_3:-19121816 | None:intergenic |
| TGGTTGGCATTTGAGACCCT+TGG | 0.522654 | 8_3:-19120642 | None:intergenic |
| ATAGGAAGCACCGTGCATAA+TGG | 0.522914 | 8_3:-19121798 | None:intergenic |
| GATGGAGAAGTTTCTAATGC+AGG | 0.527317 | 8_3:+19121729 | Msa1280480:CDS |
| TTCCAGATTATGAATGTGGA+AGG | 0.529710 | 8_3:+19120989 | Msa1280480:CDS |
| GGCCAACCATCCTTGAATGC+AGG | 0.529754 | 8_3:+19120713 | Msa1280480:CDS |
| GAACCTACGTGCTACTGCAA+TGG | 0.529949 | 8_3:+19121386 | Msa1280480:CDS |
| GTTCTTTACCATTTGCACTT+CGG | 0.531052 | 8_3:-19120748 | None:intergenic |
| ATATGAGCTCATAGGGAAAG+TGG | 0.532018 | 8_3:+19120291 | Msa1280480:CDS |
| AACTCAGCTGTTTACTGATG+AGG | 0.532043 | 8_3:+19121878 | Msa1280480:CDS |
| CGATCCAGATGCCGATCCGA+AGG | 0.532999 | 8_3:+19121488 | Msa1280480:CDS |
| ACAAAATTACTGAGATCCTT+CGG | 0.535642 | 8_3:-19121504 | None:intergenic |
| AGGTACCATGGTCCAGTAGC+CGG | 0.537071 | 8_3:+19119688 | Msa1280480:CDS |
| TGAGGTTAACCTTGTGCTTG+TGG | 0.538862 | 8_3:+19120243 | Msa1280480:CDS |
| GTTTATAAACCTACCAAGGC+TGG | 0.543151 | 8_3:-19121655 | None:intergenic |
| ACTAGAACTTACTGAAAGAC+GGG | 0.545088 | 8_3:-19120330 | None:intergenic |
| GCGCACACCACATCCAGCCT+TGG | 0.545507 | 8_3:+19121642 | Msa1280480:CDS |
| CGGACAACTTGAGCTTTCCA+AGG | 0.549307 | 8_3:-19121565 | None:intergenic |
| GCAGGACTTTGCTGTTCCAA+TGG | 0.549979 | 8_3:-19121621 | None:intergenic |
| AAACCTACCAAGGCTGGATG+TGG | 0.553582 | 8_3:-19121649 | None:intergenic |
| TACTAGAACTTACTGAAAGA+CGG | 0.553968 | 8_3:-19120331 | None:intergenic |
| TCTTTCAATACTAGTTATGA+CGG | 0.555251 | 8_3:+19120174 | Msa1280480:intron |
| CTGATGAGGATTTGAAAATG+TGG | 0.559224 | 8_3:+19121892 | Msa1280480:CDS |
| AATATTCCAGATTATGAATG+TGG | 0.565218 | 8_3:+19120985 | Msa1280480:CDS |
| AGGCTGGATGTGGTGTGCGC+AGG | 0.568764 | 8_3:-19121639 | None:intergenic |
| GGAGGTTCAGTTACCAGACA+TGG | 0.570458 | 8_3:+19120264 | Msa1280480:CDS |
| AGTCAGCGGCGAAGCTGAGG+AGG | 0.585284 | 8_3:+19119668 | Msa1280480:CDS |
| ACACCACATCCAGCCTTGGT+AGG | 0.587197 | 8_3:+19121646 | Msa1280480:CDS |
| ATGACACTCCTTCCATATCA+CGG | 0.589305 | 8_3:+19120462 | Msa1280480:CDS |
| TCCACACTGCGAATCGCCAA+AGG | 0.589805 | 8_3:-19120547 | None:intergenic |
| TGACACTCCTTCCATATCAC+GGG | 0.590869 | 8_3:+19120463 | Msa1280480:CDS |
| TCCAGATTATGAATGTGGAA+GGG | 0.595446 | 8_3:+19120990 | Msa1280480:CDS |
| ACTTTGCTGTTCCAATGGCA+GGG | 0.595685 | 8_3:-19121616 | None:intergenic |
| CCAAGAGCCCGTGATATGGA+AGG | 0.596254 | 8_3:-19120470 | None:intergenic |
| TATGAGCTCATAGGGAAAGT+GGG | 0.597713 | 8_3:+19120292 | Msa1280480:CDS |
| TTTCCTGTTCAGGAGTACTG+AGG | 0.601906 | 8_3:-19120792 | None:intergenic |
| CAGATACATCATCATTAACA+CGG | 0.604526 | 8_3:-19121677 | None:intergenic |
| GGACAACTTGAGCTTTCCAA+GGG | 0.606529 | 8_3:-19121564 | None:intergenic |
| TCTCGGACTAACAAAAGTCA+AGG | 0.607987 | 8_3:+19121432 | Msa1280480:CDS |
| AGATGTGATTATGGCAACCA+AGG | 0.609212 | 8_3:+19120625 | Msa1280480:CDS |
| ACCTTTGGCGATTCGCAGTG+TGG | 0.611049 | 8_3:+19120546 | Msa1280480:CDS |
| ATGTGGTTATCAACGATTCG+AGG | 0.613048 | 8_3:+19121909 | Msa1280480:CDS |
| CACGGTTTATAAACCTACCA+AGG | 0.615074 | 8_3:-19121659 | None:intergenic |
| TTACACCGGCTACTGGACCA+TGG | 0.619788 | 8_3:-19119693 | None:intergenic |
| ACAGATAATGGATAATGCAT+CGG | 0.619908 | 8_3:-19120209 | None:intergenic |
| AGTAGCCGGTGTAAAAGTGT+TGG | 0.620685 | 8_3:+19119702 | Msa1280480:CDS |
| GGTTAACCTTGTGCTTGTGG+AGG | 0.621345 | 8_3:+19120246 | Msa1280480:CDS |
| TGTATCTGAAAAGATCAGCC+AGG | 0.622080 | 8_3:+19121692 | Msa1280480:CDS |
| GATGTGATTATGGCAACCAA+GGG | 0.624431 | 8_3:+19120626 | Msa1280480:CDS |
| GAAGTGTCAAGAATATGCAC+AGG | 0.635227 | 8_3:-19121528 | None:intergenic |
| GTTGAAATAGCAGGAATCGA+CGG | 0.638995 | 8_3:+19120860 | Msa1280480:CDS |
| GTCTGACGAGTTCCAGTCAG+CGG | 0.643494 | 8_3:+19119654 | Msa1280480:CDS |
| GCGAAGCTGAGGAGGTACCA+TGG | 0.649372 | 8_3:+19119676 | Msa1280480:CDS |
| CGGTGTAAAAGTGTTGGTTG+TGG | 0.652064 | 8_3:+19119708 | Msa1280480:CDS |
| ATGTGAATGAATATGTGTCT+CGG | 0.664181 | 8_3:+19121415 | Msa1280480:CDS |
| ACTGAACCTCCACAAGCACA+AGG | 0.665135 | 8_3:-19120252 | None:intergenic |
| AAGCAGTACCTGACTTCGAG+TGG | 0.667065 | 8_3:+19120594 | Msa1280480:CDS |
| ATTACTGAGATCCTTCGGAT+CGG | 0.667987 | 8_3:-19121499 | None:intergenic |
| TGTAGACTCACTCGTGCTCG+CGG | 0.670245 | 8_3:-19121973 | None:intergenic |
| GTTCCATTGCAGTAGCACGT+AGG | 0.677485 | 8_3:-19121389 | None:intergenic |
| CATCCATGAATACAGGAGAA+CGG | 0.678167 | 8_3:+19120663 | Msa1280480:CDS |
| TATCTGTGAGAAGAAGAATG+AGG | 0.710608 | 8_3:+19120225 | Msa1280480:CDS |
| CATGTGCGAACCATTATGCA+CGG | 0.715428 | 8_3:+19121788 | Msa1280480:CDS |
| TCGCACATGTCAAAGCTCAG+CGG | 0.744624 | 8_3:-19121774 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATCATATTGATTTCTA+TGG | - | chr8_3:19119930-19119949 | None:intergenic | 15.0% |
| !! | ATCAATATGATTATTCATTA+TGG | + | chr8_3:19119935-19119954 | Msa1280480:intron | 15.0% |
| !! | AACAAAAATGATAAATAACA+AGG | - | chr8_3:19122036-19122055 | None:intergenic | 15.0% |
| !!! | TTTTCAATTTTTGCTTCTTA+AGG | + | chr8_3:19120092-19120111 | Msa1280480:intron | 20.0% |
| !! | AAACAATCAAATGTACTATT+AGG | - | chr8_3:19121346-19121365 | None:intergenic | 20.0% |
| !! | TTTGTTGAAGATTTCTAATT+AGG | + | chr8_3:19122068-19122087 | Msa1280480:intron | 20.0% |
| !! | GCATTTTTGATACAATTGTT+CGG | - | chr8_3:19119750-19119769 | None:intergenic | 25.0% |
| ! | TAGATAAACAGCTAGAAATA+TGG | - | chr8_3:19119903-19119922 | None:intergenic | 25.0% |
| ! | GAAGCAAAAATTGAAAATCA+CGG | - | chr8_3:19120089-19120108 | None:intergenic | 25.0% |
| ! | TCTTTCAATACTAGTTATGA+CGG | + | chr8_3:19120174-19120193 | Msa1280480:intron | 25.0% |
| ! | TGATTTACATATGAAGTTCT+TGG | + | chr8_3:19120832-19120851 | Msa1280480:CDS | 25.0% |
| !! | ATAATCTGGAATATTGTCTT+CGG | - | chr8_3:19120980-19120999 | None:intergenic | 25.0% |
| ! | AATATTCCAGATTATGAATG+TGG | + | chr8_3:19120985-19121004 | Msa1280480:CDS | 25.0% |
| !! | TAAAGTCTGAAACTCAAAAT+AGG | + | chr8_3:19121151-19121170 | Msa1280480:intron | 25.0% |
| !!! | AATTTCAGTTATGTTTTAGC+AGG | + | chr8_3:19121253-19121272 | Msa1280480:intron | 25.0% |
| !!! | TCAAAACTTGTTTTTCTAGA+GGG | - | chr8_3:19121464-19121483 | None:intergenic | 25.0% |
| !!! | ATCAAAACTTGTTTTTCTAG+AGG | - | chr8_3:19121465-19121484 | None:intergenic | 25.0% |
| TCAAAAATGCTTCTTTCACT+TGG | + | chr8_3:19119760-19119779 | Msa1280480:CDS | 30.0% | |
| AAGGTAATTGACACTTATTC+TGG | + | chr8_3:19119788-19119807 | Msa1280480:intron | 30.0% | |
| TTATATGATGATCTTAAGCG+AGG | - | chr8_3:19120043-19120062 | None:intergenic | 30.0% | |
| CTTCTTAAGGCTAAACTATT+GGG | + | chr8_3:19120105-19120124 | Msa1280480:intron | 30.0% | |
| !! | ACAGATAATGGATAATGCAT+CGG | - | chr8_3:19120212-19120231 | None:intergenic | 30.0% |
| ATTCTTCTTCTCACAGATAA+TGG | - | chr8_3:19120224-19120243 | None:intergenic | 30.0% | |
| ATGGAAATATATGAGCTCAT+AGG | + | chr8_3:19120283-19120302 | Msa1280480:CDS | 30.0% | |
| TGGAAATATATGAGCTCATA+GGG | + | chr8_3:19120284-19120303 | Msa1280480:CDS | 30.0% | |
| TACTAGAACTTACTGAAAGA+CGG | - | chr8_3:19120334-19120353 | None:intergenic | 30.0% | |
| ! | CTTCTAGACCAATTTCATTT+TGG | - | chr8_3:19120694-19120713 | None:intergenic | 30.0% |
| ! | CAAAATGAAATTGGTCTAGA+AGG | + | chr8_3:19120692-19120711 | Msa1280480:CDS | 30.0% |
| ACAAACCTGTAAATAGTTTG+AGG | - | chr8_3:19121032-19121051 | None:intergenic | 30.0% | |
| ! | TACAGGTTTGTTCTTTGTAA+TGG | + | chr8_3:19121041-19121060 | Msa1280480:intron | 30.0% |
| ! | TTTTTAATAACCGACATGTG+TGG | + | chr8_3:19121102-19121121 | Msa1280480:intron | 30.0% |
| !! | TCTGTTTCTGTATTATCATG+TGG | + | chr8_3:19121306-19121325 | Msa1280480:intron | 30.0% |
| ATGTGAATGAATATGTGTCT+CGG | + | chr8_3:19121415-19121434 | Msa1280480:CDS | 30.0% | |
| ACAAAATTACTGAGATCCTT+CGG | - | chr8_3:19121507-19121526 | None:intergenic | 30.0% | |
| CAGATACATCATCATTAACA+CGG | - | chr8_3:19121680-19121699 | None:intergenic | 30.0% | |
| !!! | TCATAGTATGCTTTTTCATC+TGG | - | chr8_3:19121837-19121856 | None:intergenic | 30.0% |
| CTTCTTTCACTTGGATATGA+AGG | + | chr8_3:19119769-19119788 | Msa1280480:CDS | 35.0% | |
| GCTTCTTAAGGCTAAACTAT+TGG | + | chr8_3:19120104-19120123 | Msa1280480:intron | 35.0% | |
| TATCTGTGAGAAGAAGAATG+AGG | + | chr8_3:19120225-19120244 | Msa1280480:CDS | 35.0% | |
| AGCTCATATATTTCCATGTC+TGG | - | chr8_3:19120280-19120299 | None:intergenic | 35.0% | |
| ACTAGAACTTACTGAAAGAC+GGG | - | chr8_3:19120333-19120352 | None:intergenic | 35.0% | |
| ! | GTAAGTTCTAGTACTAGCTT+AGG | + | chr8_3:19120341-19120360 | Msa1280480:intron | 35.0% |
| !! | TGGCTTTCTAAAACACCATT+TGG | - | chr8_3:19120504-19120523 | None:intergenic | 35.0% |
| TGTAGATCAGAAATCTGAAC+TGG | - | chr8_3:19120524-19120543 | None:intergenic | 35.0% | |
| TTTCTGATCTACATGACCTT+TGG | + | chr8_3:19120531-19120550 | Msa1280480:CDS | 35.0% | |
| GTTCTTTACCATTTGCACTT+CGG | - | chr8_3:19120751-19120770 | None:intergenic | 35.0% | |
| AAGTGCAAATGGTAAAGAAC+AGG | + | chr8_3:19120751-19120770 | Msa1280480:CDS | 35.0% | |
| ! | AGTACTGAGGTATCATTATC+AGG | - | chr8_3:19120782-19120801 | None:intergenic | 35.0% |
| ATTAATTTCTGCTGTGCTAG+TGG | + | chr8_3:19120907-19120926 | Msa1280480:intron | 35.0% | |
| TTCCAGATTATGAATGTGGA+AGG | + | chr8_3:19120989-19121008 | Msa1280480:CDS | 35.0% | |
| TCCAGATTATGAATGTGGAA+GGG | + | chr8_3:19120990-19121009 | Msa1280480:CDS | 35.0% | |
| AAACTCAAAATAGGCACACT+TGG | + | chr8_3:19121160-19121179 | Msa1280480:intron | 35.0% | |
| AACTCAAAATAGGCACACTT+GGG | + | chr8_3:19121161-19121180 | Msa1280480:intron | 35.0% | |
| ! | TTTTAGTAATCCCCAATGGT+GGG | - | chr8_3:19121206-19121225 | None:intergenic | 35.0% |
| !! | AACGTTTTAGTAATCCCCAA+TGG | - | chr8_3:19121210-19121229 | None:intergenic | 35.0% |
| !!! | TTCTGCTATTTTTCTTCCCT+TGG | + | chr8_3:19121548-19121567 | Msa1280480:CDS | 35.0% |
| !!! | TAGTATGCTTTTTCATCTGG+TGG | - | chr8_3:19121834-19121853 | None:intergenic | 35.0% |
| CTGATGAGGATTTGAAAATG+TGG | + | chr8_3:19121892-19121911 | Msa1280480:CDS | 35.0% | |
| CACGCACAATGATATATTAC+TGG | - | chr8_3:19121945-19121964 | None:intergenic | 35.0% | |
| ! | CTAATTAGGCCACTTTGATT+TGG | + | chr8_3:19122082-19122101 | Msa1280480:intron | 35.0% |
| ! | CACAACCAACACTTTTACAC+CGG | - | chr8_3:19119710-19119729 | None:intergenic | 40.0% |
| ACTACTACACTCAGATTTCG+TGG | + | chr8_3:19119861-19119880 | Msa1280480:intron | 40.0% | |
| ATATGAGCTCATAGGGAAAG+TGG | + | chr8_3:19120291-19120310 | Msa1280480:CDS | 40.0% | |
| TATGAGCTCATAGGGAAAGT+GGG | + | chr8_3:19120292-19120311 | Msa1280480:CDS | 40.0% | |
| ATGACACTCCTTCCATATCA+CGG | + | chr8_3:19120462-19120481 | Msa1280480:CDS | 40.0% | |
| !! | CAGTGACTGCTGTTTCATAT+CGG | - | chr8_3:19120574-19120593 | None:intergenic | 40.0% |
| GTGTCTGTCAGATGTGATTA+TGG | + | chr8_3:19120616-19120635 | Msa1280480:CDS | 40.0% | |
| AGATGTGATTATGGCAACCA+AGG | + | chr8_3:19120625-19120644 | Msa1280480:CDS | 40.0% | |
| GATGTGATTATGGCAACCAA+GGG | + | chr8_3:19120626-19120645 | Msa1280480:CDS | 40.0% | |
| CATCCATGAATACAGGAGAA+CGG | + | chr8_3:19120663-19120682 | Msa1280480:CDS | 40.0% | |
| ! | TTTTCTCCTGCATTCAAGGA+TGG | - | chr8_3:19120722-19120741 | None:intergenic | 40.0% |
| ! | AGTCTTTTCTCCTGCATTCA+AGG | - | chr8_3:19120726-19120745 | None:intergenic | 40.0% |
| ! | AGCTTTTCCTTTTCCTGTTC+AGG | - | chr8_3:19120805-19120824 | None:intergenic | 40.0% |
| TGAACAGGAAAAGGAAAAGC+TGG | + | chr8_3:19120804-19120823 | Msa1280480:CDS | 40.0% | |
| TTGGAAGCTGTTGAAATAGC+AGG | + | chr8_3:19120851-19120870 | Msa1280480:CDS | 40.0% | |
| GTTGAAATAGCAGGAATCGA+CGG | + | chr8_3:19120860-19120879 | Msa1280480:CDS | 40.0% | |
| ACCCTTCCACATTCATAATC+TGG | - | chr8_3:19120994-19121013 | None:intergenic | 40.0% | |
| ! | ATAGTTTGAGGCACTCTCTT+TGG | - | chr8_3:19121020-19121039 | None:intergenic | 40.0% |
| GAGTGCCTCAAACTATTTAC+AGG | + | chr8_3:19121024-19121043 | Msa1280480:CDS | 40.0% | |
| ! | TGGACATTTTCCACACATGT+CGG | - | chr8_3:19121115-19121134 | None:intergenic | 40.0% |
| TTTACATCAAGCAGTACGCT+TGG | - | chr8_3:19121135-19121154 | None:intergenic | 40.0% | |
| ACTCAAAATAGGCACACTTG+GGG | + | chr8_3:19121162-19121181 | Msa1280480:intron | 40.0% | |
| !! | GTTTTAGTAATCCCCAATGG+TGG | - | chr8_3:19121207-19121226 | None:intergenic | 40.0% |
| TCTCGGACTAACAAAAGTCA+AGG | + | chr8_3:19121432-19121451 | Msa1280480:CDS | 40.0% | |
| ATTACTGAGATCCTTCGGAT+CGG | - | chr8_3:19121502-19121521 | None:intergenic | 40.0% | |
| ! | GAAGTGTCAAGAATATGCAC+AGG | - | chr8_3:19121531-19121550 | None:intergenic | 40.0% |
| GTTTATAAACCTACCAAGGC+TGG | - | chr8_3:19121658-19121677 | None:intergenic | 40.0% | |
| CACGGTTTATAAACCTACCA+AGG | - | chr8_3:19121662-19121681 | None:intergenic | 40.0% | |
| TGTATCTGAAAAGATCAGCC+AGG | + | chr8_3:19121692-19121711 | Msa1280480:CDS | 40.0% | |
| CATCTGCTGTATTCAAAACC+TGG | - | chr8_3:19121713-19121732 | None:intergenic | 40.0% | |
| !!! | CAGGTTTTGAATACAGCAGA+TGG | + | chr8_3:19121711-19121730 | Msa1280480:CDS | 40.0% |
| GATGGAGAAGTTTCTAATGC+AGG | + | chr8_3:19121729-19121748 | Msa1280480:CDS | 40.0% | |
| AACTCAGCTGTTTACTGATG+AGG | + | chr8_3:19121878-19121897 | Msa1280480:CDS | 40.0% | |
| ATGTGGTTATCAACGATTCG+AGG | + | chr8_3:19121909-19121928 | Msa1280480:CDS | 40.0% | |
| !! | AACACTTTTACACCGGCTAC+TGG | - | chr8_3:19119703-19119722 | None:intergenic | 45.0% |
| ! | AGTAGCCGGTGTAAAAGTGT+TGG | + | chr8_3:19119702-19119721 | Msa1280480:CDS | 45.0% |
| !! | CGGTGTAAAAGTGTTGGTTG+TGG | + | chr8_3:19119708-19119727 | Msa1280480:CDS | 45.0% |
| GTTGGTTGTGGATGCTAGTT+CGG | + | chr8_3:19119720-19119739 | Msa1280480:CDS | 45.0% | |
| TGAGGTTAACCTTGTGCTTG+TGG | + | chr8_3:19120243-19120262 | Msa1280480:CDS | 45.0% | |
| TGACACTCCTTCCATATCAC+GGG | + | chr8_3:19120463-19120482 | Msa1280480:CDS | 45.0% | |
| AAAACCAAGAGCCCGTGATA+TGG | - | chr8_3:19120477-19120496 | None:intergenic | 45.0% | |
| ! | ATATCACGGGCTCTTGGTTT+TGG | + | chr8_3:19120476-19120495 | Msa1280480:CDS | 45.0% |
| !!! | CTCTTGGTTTTGGAGCCAAA+TGG | + | chr8_3:19120486-19120505 | Msa1280480:CDS | 45.0% |
| TGCCAACCATCCATGAATAC+AGG | + | chr8_3:19120656-19120675 | Msa1280480:CDS | 45.0% | |
| CTCCTGTATTCATGGATGGT+TGG | - | chr8_3:19120661-19120680 | None:intergenic | 45.0% | |
| CGTTCTCCTGTATTCATGGA+TGG | - | chr8_3:19120665-19120684 | None:intergenic | 45.0% | |
| AGACCGTTCTCCTGTATTCA+TGG | - | chr8_3:19120669-19120688 | None:intergenic | 45.0% | |
| CGGTCTCGCCAAAATGAAAT+TGG | + | chr8_3:19120683-19120702 | Msa1280480:CDS | 45.0% | |
| AAGACTCTCCGAAGTGCAAA+TGG | + | chr8_3:19120740-19120759 | Msa1280480:CDS | 45.0% | |
| ATACCTCAGTACTCCTGAAC+AGG | + | chr8_3:19120789-19120808 | Msa1280480:CDS | 45.0% | |
| !! | TTTCCTGTTCAGGAGTACTG+AGG | - | chr8_3:19120795-19120814 | None:intergenic | 45.0% |
| CAGTACTCCTGAACAGGAAA+AGG | + | chr8_3:19120795-19120814 | Msa1280480:CDS | 45.0% | |
| TTGTCGTTCTTGTGTGAAGC+TGG | + | chr8_3:19120953-19120972 | Msa1280480:intron | 45.0% | |
| GGACAACTTGAGCTTTCCAA+GGG | - | chr8_3:19121567-19121586 | None:intergenic | 45.0% | |
| ! | CTTGGAAAGCTCAAGTTGTC+CGG | + | chr8_3:19121566-19121585 | Msa1280480:CDS | 45.0% |
| !! | ACTTTGCTGTTCCAATGGCA+GGG | - | chr8_3:19121619-19121638 | None:intergenic | 45.0% |
| CATGTGCGAACCATTATGCA+CGG | + | chr8_3:19121788-19121807 | Msa1280480:CDS | 45.0% | |
| !! | ATAGGAAGCACCGTGCATAA+TGG | - | chr8_3:19121801-19121820 | None:intergenic | 45.0% |
| !!! | TTTTCATCTGGTGGTAGTGG+CGG | - | chr8_3:19121825-19121844 | None:intergenic | 45.0% |
| !!! | GCTTTTTCATCTGGTGGTAG+TGG | - | chr8_3:19121828-19121847 | None:intergenic | 45.0% |
| TATATCATTGTGCGTGCGCT+CGG | + | chr8_3:19121949-19121968 | Msa1280480:CDS | 45.0% | |
| !! | TTAGGCCACTTTGATTTGGC+AGG | + | chr8_3:19122086-19122105 | Msa1280480:intron | 45.0% |
| CATTGCCTGCCAAATCAAAG+TGG | - | chr8_3:19122094-19122113 | None:intergenic | 45.0% | |
| !!! | ATTTTTTATATTTATATTTC+TGG | + | chr8_3:19119823-19119842 | Msa1280480:intron | 5.0% |
| !!! | TTTTCAAAAATAAATAAAAA+TGG | - | chr8_3:19120140-19120159 | None:intergenic | 5.0% |
| GGTTAACCTTGTGCTTGTGG+AGG | + | chr8_3:19120246-19120265 | Msa1280480:CDS | 50.0% | |
| ACTGAACCTCCACAAGCACA+AGG | - | chr8_3:19120255-19120274 | None:intergenic | 50.0% | |
| GGAGGTTCAGTTACCAGACA+TGG | + | chr8_3:19120264-19120283 | Msa1280480:CDS | 50.0% | |
| AAGCAGTACCTGACTTCGAG+TGG | + | chr8_3:19120594-19120613 | Msa1280480:CDS | 50.0% | |
| ! | TGGTTGGCATTTGAGACCCT+TGG | - | chr8_3:19120645-19120664 | None:intergenic | 50.0% |
| CTCCTGCATTCAAGGATGGT+TGG | - | chr8_3:19120718-19120737 | None:intergenic | 50.0% | |
| ! | GAACCTACGTGCTACTGCAA+TGG | + | chr8_3:19121386-19121405 | Msa1280480:CDS | 50.0% |
| GTTCCATTGCAGTAGCACGT+AGG | - | chr8_3:19121392-19121411 | None:intergenic | 50.0% | |
| CGGACAACTTGAGCTTTCCA+AGG | - | chr8_3:19121568-19121587 | None:intergenic | 50.0% | |
| ! | TTTTGCCGGAAAGGTGACTC+CGG | - | chr8_3:19121588-19121607 | None:intergenic | 50.0% |
| !! | GACAGCTGATTTTGCCGGAA+AGG | - | chr8_3:19121597-19121616 | None:intergenic | 50.0% |
| AAATCAGCTGTCCCTGCCAT+TGG | + | chr8_3:19121605-19121624 | Msa1280480:CDS | 50.0% | |
| !! | GACTTTGCTGTTCCAATGGC+AGG | - | chr8_3:19121620-19121639 | None:intergenic | 50.0% |
| !! | GCAGGACTTTGCTGTTCCAA+TGG | - | chr8_3:19121624-19121643 | None:intergenic | 50.0% |
| AAACCTACCAAGGCTGGATG+TGG | - | chr8_3:19121652-19121671 | None:intergenic | 50.0% | |
| TCGCACATGTCAAAGCTCAG+CGG | - | chr8_3:19121777-19121796 | None:intergenic | 50.0% | |
| ATATCATTGTGCGTGCGCTC+GGG | + | chr8_3:19121950-19121969 | Msa1280480:CDS | 50.0% | |
| GTCTGACGAGTTCCAGTCAG+CGG | + | chr8_3:19119654-19119673 | Msa1280480:CDS | 55.0% | |
| AGGTACCATGGTCCAGTAGC+CGG | + | chr8_3:19119688-19119707 | Msa1280480:CDS | 55.0% | |
| ! | TTACACCGGCTACTGGACCA+TGG | - | chr8_3:19119696-19119715 | None:intergenic | 55.0% |
| CCAAGAGCCCGTGATATGGA+AGG | - | chr8_3:19120473-19120492 | None:intergenic | 55.0% | |
| CCTTCCATATCACGGGCTCT+TGG | + | chr8_3:19120470-19120489 | Msa1280480:CDS | 55.0% | |
| ACCTTTGGCGATTCGCAGTG+TGG | + | chr8_3:19120546-19120565 | Msa1280480:CDS | 55.0% | |
| TCCACACTGCGAATCGCCAA+AGG | - | chr8_3:19120550-19120569 | None:intergenic | 55.0% | |
| GACAGACACCACTCGAAGTC+AGG | - | chr8_3:19120605-19120624 | None:intergenic | 55.0% | |
| GGCCAACCATCCTTGAATGC+AGG | + | chr8_3:19120713-19120732 | Msa1280480:CDS | 55.0% | |
| ATAGGCACACTTGGGGCAAC+TGG | + | chr8_3:19121169-19121188 | Msa1280480:intron | 55.0% | |
| AGATCCTTCGGATCGGCATC+TGG | - | chr8_3:19121495-19121514 | None:intergenic | 55.0% | |
| GTTGTCCGGAGTCACCTTTC+CGG | + | chr8_3:19121580-19121599 | Msa1280480:CDS | 55.0% | |
| !! | GCAGGGACAGCTGATTTTGC+CGG | - | chr8_3:19121602-19121621 | None:intergenic | 55.0% |
| ACACCACATCCAGCCTTGGT+AGG | + | chr8_3:19121646-19121665 | Msa1280480:CDS | 55.0% | |
| TGTAGACTCACTCGTGCTCG+CGG | - | chr8_3:19121976-19121995 | None:intergenic | 55.0% | |
| !! | GCGAAGCTGAGGAGGTACCA+TGG | + | chr8_3:19119676-19119695 | Msa1280480:CDS | 60.0% |
| TGCTCGAGGCTCCCACCATT+GGG | + | chr8_3:19121192-19121211 | Msa1280480:intron | 60.0% | |
| CGATCCAGATGCCGATCCGA+AGG | + | chr8_3:19121488-19121507 | Msa1280480:CDS | 60.0% | |
| !! | TCTGGTGGTAGTGGCGGCAT+AGG | - | chr8_3:19121819-19121838 | None:intergenic | 60.0% |
| TCCAGTCAGCGGCGAAGCTG+AGG | + | chr8_3:19119665-19119684 | Msa1280480:CDS | 65.0% | |
| TCCTCAGCTTCGCCGCTGAC+TGG | - | chr8_3:19119669-19119688 | None:intergenic | 65.0% | |
| AGTCAGCGGCGAAGCTGAGG+AGG | + | chr8_3:19119668-19119687 | Msa1280480:CDS | 65.0% | |
| CTTGGGGCAACTGGTGCTCG+AGG | + | chr8_3:19121178-19121197 | Msa1280480:intron | 65.0% | |
| GTGCTCGAGGCTCCCACCAT+TGG | + | chr8_3:19121191-19121210 | Msa1280480:intron | 65.0% | |
| GCTCGAGGCTCCCACCATTG+GGG | + | chr8_3:19121193-19121212 | Msa1280480:intron | 65.0% | |
| AGGCTGGATGTGGTGTGCGC+AGG | - | chr8_3:19121642-19121661 | None:intergenic | 65.0% | |
| GCGCACACCACATCCAGCCT+TGG | + | chr8_3:19121642-19121661 | Msa1280480:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 19119649 | 19122130 | 19119649 | ID=Msa1280480;Name=Msa1280480 |
| chr8_3 | mRNA | 19119649 | 19122130 | 19119649 | ID=Msa1280480-mRNA-1;Parent=Msa1280480;Name=Msa1280480-mRNA-1;_AED=0.05;_eAED=0.06;_QI=0|0|0|0.83|0.8|0.83|6|0|488 |
| chr8_3 | exon | 19119649 | 19119790 | 19119649 | ID=Msa1280480-mRNA-1:exon:7117;Parent=Msa1280480-mRNA-1 |
| chr8_3 | exon | 19120188 | 19120340 | 19120188 | ID=Msa1280480-mRNA-1:exon:7118;Parent=Msa1280480-mRNA-1 |
| chr8_3 | exon | 19120444 | 19120881 | 19120444 | ID=Msa1280480-mRNA-1:exon:7119;Parent=Msa1280480-mRNA-1 |
| chr8_3 | exon | 19120972 | 19121045 | 19120972 | ID=Msa1280480-mRNA-1:exon:7120;Parent=Msa1280480-mRNA-1 |
| chr8_3 | exon | 19121369 | 19122005 | 19121369 | ID=Msa1280480-mRNA-1:exon:7121;Parent=Msa1280480-mRNA-1 |
| chr8_3 | exon | 19122108 | 19122130 | 19122108 | ID=Msa1280480-mRNA-1:exon:7122;Parent=Msa1280480-mRNA-1 |
| chr8_3 | CDS | 19119649 | 19119790 | 19119649 | ID=Msa1280480-mRNA-1:cds;Parent=Msa1280480-mRNA-1 |
| chr8_3 | CDS | 19120188 | 19120340 | 19120188 | ID=Msa1280480-mRNA-1:cds;Parent=Msa1280480-mRNA-1 |
| chr8_3 | CDS | 19120444 | 19120881 | 19120444 | ID=Msa1280480-mRNA-1:cds;Parent=Msa1280480-mRNA-1 |
| chr8_3 | CDS | 19120972 | 19121045 | 19120972 | ID=Msa1280480-mRNA-1:cds;Parent=Msa1280480-mRNA-1 |
| chr8_3 | CDS | 19121369 | 19122005 | 19121369 | ID=Msa1280480-mRNA-1:cds;Parent=Msa1280480-mRNA-1 |
| chr8_3 | CDS | 19122108 | 19122130 | 19122108 | ID=Msa1280480-mRNA-1:cds;Parent=Msa1280480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
