Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1280570 | sp|Q8S9H7|DIV_ANTMA | 58.333 | 84 | 31 | 2 | 46 | 128 | 123 | 203 | 8.12e-23 | 95.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1280570 | A0A396HY12 | 90.152 | 132 | 13 | 0 | 1 | 132 | 46 | 177 | 3.67e-80 | 249 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1280570 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1280570 | MtrunA17_Chr5g0440741 | 90.152 | 132 | 13 | 0 | 1 | 132 | 46 | 177 | 7.07e-84 | 249 |
| Msa1280570 | MtrunA17_Chr5g0440731 | 88.321 | 137 | 11 | 2 | 1 | 132 | 46 | 182 | 8.73e-83 | 247 |
| Msa1280570 | MtrunA17_Chr5g0409841 | 67.143 | 140 | 35 | 3 | 3 | 132 | 30 | 168 | 1.33e-58 | 183 |
| Msa1280570 | MtrunA17_Chr5g0409831 | 59.854 | 137 | 39 | 3 | 1 | 132 | 29 | 154 | 5.42e-44 | 146 |
| Msa1280570 | MtrunA17_Chr1g0162081 | 58.974 | 78 | 27 | 3 | 53 | 128 | 119 | 193 | 2.66e-23 | 94.4 |
| Msa1280570 | MtrunA17_Chr5g0429521 | 50.962 | 104 | 39 | 6 | 36 | 136 | 117 | 211 | 3.10e-23 | 94.0 |
| Msa1280570 | MtrunA17_Chr3g0104071 | 63.380 | 71 | 20 | 3 | 57 | 125 | 149 | 215 | 3.90e-23 | 94.0 |
| Msa1280570 | MtrunA17_Chr1g0210471 | 45.038 | 131 | 60 | 6 | 11 | 132 | 72 | 199 | 5.08e-23 | 92.4 |
| Msa1280570 | MtrunA17_Chr5g0436501 | 61.333 | 75 | 27 | 2 | 50 | 123 | 119 | 192 | 7.45e-23 | 92.4 |
| Msa1280570 | MtrunA17_Chr7g0241761 | 55.696 | 79 | 32 | 1 | 46 | 124 | 131 | 206 | 6.42e-22 | 90.9 |
| Msa1280570 | MtrunA17_Chr4g0062741 | 51.807 | 83 | 36 | 2 | 53 | 134 | 135 | 214 | 6.61e-22 | 90.5 |
| Msa1280570 | MtrunA17_Chr3g0135671 | 43.750 | 96 | 54 | 0 | 57 | 152 | 93 | 188 | 4.74e-21 | 87.0 |
| Msa1280570 | MtrunA17_Chr8g0365011 | 53.571 | 84 | 26 | 2 | 56 | 127 | 93 | 175 | 2.97e-20 | 85.9 |
| Msa1280570 | MtrunA17_Chr2g0331031 | 55.385 | 65 | 26 | 1 | 57 | 121 | 111 | 172 | 1.05e-18 | 82.4 |
| Msa1280570 | MtrunA17_Chr8g0364731 | 59.375 | 64 | 25 | 1 | 64 | 127 | 10 | 72 | 1.88e-18 | 79.0 |
| Msa1280570 | MtrunA17_Chr4g0055931 | 39.655 | 116 | 57 | 5 | 15 | 121 | 47 | 158 | 4.89e-18 | 80.5 |
| Msa1280570 | MtrunA17_Chr5g0432921 | 40.164 | 122 | 70 | 2 | 12 | 133 | 72 | 190 | 1.07e-17 | 77.8 |
| Msa1280570 | MtrunA17_Chr8g0389241 | 53.846 | 65 | 26 | 1 | 57 | 121 | 107 | 167 | 2.29e-17 | 77.8 |
| Msa1280570 | MtrunA17_Chr4g0059701 | 67.347 | 49 | 16 | 0 | 53 | 101 | 82 | 130 | 2.32e-17 | 77.8 |
| Msa1280570 | MtrunA17_Chr5g0415191 | 71.111 | 45 | 13 | 0 | 57 | 101 | 104 | 148 | 3.57e-17 | 77.8 |
| Msa1280570 | MtrunA17_Chr3g0113121 | 47.826 | 92 | 40 | 3 | 56 | 139 | 96 | 187 | 1.68e-16 | 74.3 |
| Msa1280570 | MtrunA17_Chr6g0488471 | 53.846 | 65 | 27 | 1 | 57 | 121 | 99 | 160 | 1.81e-16 | 75.5 |
| Msa1280570 | MtrunA17_Chr5g0432941 | 39.640 | 111 | 57 | 2 | 32 | 133 | 81 | 190 | 5.05e-16 | 73.2 |
| Msa1280570 | MtrunA17_Chr6g0452791 | 56.364 | 55 | 24 | 0 | 57 | 111 | 82 | 136 | 2.12e-15 | 70.5 |
| Msa1280570 | MtrunA17_Chr3g0092621 | 45.714 | 70 | 35 | 1 | 57 | 126 | 86 | 152 | 3.42e-15 | 70.1 |
| Msa1280570 | MtrunA17_Chr1g0192061 | 38.462 | 130 | 59 | 7 | 23 | 134 | 13 | 139 | 9.97e-15 | 68.9 |
| Msa1280570 | MtrunA17_Chr1g0155631 | 70.213 | 47 | 12 | 1 | 147 | 193 | 16 | 60 | 7.17e-13 | 65.1 |
| Msa1280570 | MtrunA17_Chr1g0168341 | 70.213 | 47 | 12 | 1 | 147 | 193 | 16 | 60 | 8.01e-13 | 64.7 |
| Msa1280570 | MtrunA17_Chr6g0469891 | 68.085 | 47 | 13 | 1 | 147 | 193 | 12 | 56 | 1.54e-12 | 63.9 |
| Msa1280570 | MtrunA17_Chr6g0469871 | 68.085 | 47 | 13 | 1 | 147 | 193 | 12 | 56 | 1.54e-12 | 63.9 |
| Msa1280570 | MtrunA17_Chr8g0370121 | 40.000 | 65 | 39 | 0 | 39 | 103 | 84 | 148 | 1.37e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1280570 | AT5G04760.1 | 63.158 | 76 | 25 | 1 | 48 | 123 | 92 | 164 | 2.62e-24 | 95.5 |
| Msa1280570 | AT5G58900.1 | 55.556 | 99 | 35 | 4 | 41 | 135 | 128 | 221 | 6.44e-24 | 95.9 |
| Msa1280570 | AT5G08520.1 | 58.025 | 81 | 30 | 2 | 53 | 132 | 115 | 192 | 1.41e-23 | 95.1 |
| Msa1280570 | AT5G01200.1 | 64.286 | 70 | 21 | 2 | 57 | 125 | 148 | 214 | 1.11e-22 | 92.4 |
| Msa1280570 | AT2G38090.1 | 57.317 | 82 | 30 | 3 | 50 | 129 | 135 | 213 | 5.02e-22 | 91.3 |
| Msa1280570 | AT1G49010.1 | 54.217 | 83 | 33 | 3 | 53 | 133 | 131 | 210 | 5.05e-22 | 91.3 |
| Msa1280570 | AT3G11280.2 | 54.878 | 82 | 32 | 2 | 57 | 136 | 129 | 207 | 9.08e-22 | 89.7 |
| Msa1280570 | AT3G11280.1 | 54.878 | 82 | 32 | 2 | 57 | 136 | 129 | 207 | 9.08e-22 | 89.7 |
| Msa1280570 | AT5G05790.2 | 57.500 | 80 | 26 | 3 | 53 | 127 | 128 | 204 | 5.02e-21 | 88.2 |
| Msa1280570 | AT5G05790.1 | 57.500 | 80 | 26 | 3 | 53 | 127 | 128 | 204 | 5.02e-21 | 88.2 |
| Msa1280570 | AT5G23650.1 | 54.321 | 81 | 33 | 2 | 53 | 132 | 117 | 194 | 7.50e-21 | 88.6 |
| Msa1280570 | AT5G61620.1 | 55.844 | 77 | 30 | 2 | 49 | 124 | 101 | 174 | 2.15e-19 | 84.3 |
| Msa1280570 | AT3G10580.2 | 42.727 | 110 | 46 | 3 | 27 | 124 | 55 | 159 | 2.60e-19 | 83.2 |
| Msa1280570 | AT3G10580.1 | 42.727 | 110 | 46 | 3 | 27 | 124 | 55 | 159 | 3.49e-19 | 83.2 |
| Msa1280570 | AT4G09450.1 | 57.353 | 68 | 26 | 1 | 57 | 124 | 93 | 157 | 2.71e-18 | 79.3 |
| Msa1280570 | AT5G47390.1 | 56.061 | 66 | 24 | 2 | 57 | 121 | 98 | 159 | 8.59e-18 | 80.5 |
| Msa1280570 | AT1G70000.1 | 67.347 | 49 | 16 | 0 | 53 | 101 | 96 | 144 | 2.45e-17 | 77.8 |
| Msa1280570 | AT1G70000.2 | 67.347 | 49 | 16 | 0 | 53 | 101 | 96 | 144 | 2.45e-17 | 77.8 |
| Msa1280570 | AT5G56840.1 | 55.385 | 65 | 27 | 1 | 57 | 121 | 93 | 155 | 5.02e-17 | 76.6 |
| Msa1280570 | AT1G19000.2 | 45.745 | 94 | 43 | 3 | 13 | 101 | 58 | 148 | 7.96e-17 | 77.0 |
| Msa1280570 | AT1G19000.1 | 45.745 | 94 | 43 | 3 | 13 | 101 | 58 | 148 | 7.96e-17 | 77.0 |
| Msa1280570 | AT3G16350.1 | 66.667 | 45 | 15 | 0 | 57 | 101 | 139 | 183 | 1.68e-16 | 77.0 |
| Msa1280570 | AT1G74840.2 | 67.347 | 49 | 16 | 0 | 53 | 101 | 94 | 142 | 2.17e-16 | 75.1 |
| Msa1280570 | AT1G74840.1 | 67.347 | 49 | 16 | 0 | 53 | 101 | 94 | 142 | 2.40e-16 | 75.1 |
| Msa1280570 | AT3G10590.1 | 41.837 | 98 | 48 | 3 | 32 | 124 | 83 | 176 | 2.70e-14 | 68.6 |
| Msa1280570 | AT2G31610.1 | 68.085 | 47 | 13 | 1 | 147 | 193 | 16 | 60 | 1.33e-11 | 62.0 |
| Msa1280570 | AT5G35530.1 | 68.085 | 47 | 13 | 1 | 147 | 193 | 16 | 60 | 1.69e-11 | 61.6 |
| Msa1280570 | AT3G53870.1 | 68.085 | 47 | 13 | 1 | 147 | 193 | 16 | 60 | 1.81e-11 | 61.6 |
Find 34 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCCATATCTTTCACATTT+TGG | 0.113024 | 8_3:+19216770 | None:intergenic |
| CAATGTGTCATTCTTGTTTA+AGG | 0.128626 | 8_3:+19216711 | None:intergenic |
| TTATTCTGGTGTTGAGTTTA+TGG | 0.161703 | 8_3:-19215364 | Msa1280570:CDS |
| CTGTCCAATGCCCTTTCCTT+GGG | 0.257949 | 8_3:+19217180 | None:intergenic |
| CTTGGGGCATGACTTTCTTC+TGG | 0.281577 | 8_3:+19217197 | None:intergenic |
| TTTCTTCACTGAATTGAATC+TGG | 0.283210 | 8_3:-19215421 | Msa1280570:CDS |
| TCTGTCCAATGCCCTTTCCT+TGG | 0.314383 | 8_3:+19217179 | None:intergenic |
| CTTGCCGAGGATGGTTATTC+TGG | 0.318525 | 8_3:-19215378 | Msa1280570:CDS |
| CCACCAAAATGTGAAAGATA+TGG | 0.357161 | 8_3:-19216773 | Msa1280570:CDS |
| TCATGATTTCAGTGTGCATT+CGG | 0.375593 | 8_3:+19215337 | None:intergenic |
| CACTGAATTGAATCTGGAGT+TGG | 0.402758 | 8_3:-19215415 | Msa1280570:CDS |
| CATGATTTCAGTGTGCATTC+GGG | 0.423283 | 8_3:+19215338 | None:intergenic |
| AAATATTTCAAAAGAATTTG+TGG | 0.425853 | 8_3:-19216845 | Msa1280570:CDS |
| GAACAACAACAGGAGAAAAC+TGG | 0.441684 | 8_3:-19217329 | Msa1280570:CDS |
| TGTGAAAGATATGGAAAAGA+AGG | 0.454324 | 8_3:-19216764 | Msa1280570:CDS |
| GCATAGCATGGAACAACAAC+AGG | 0.469925 | 8_3:-19217339 | None:intergenic |
| AAAGTCATGCCCCAAGGAAA+GGG | 0.493395 | 8_3:-19217190 | Msa1280570:CDS |
| ATCACTTACCAAGAGCAACT+TGG | 0.505343 | 8_3:+19215298 | None:intergenic |
| ACTCGCACCCAAGTTGCTCT+TGG | 0.512509 | 8_3:-19215306 | Msa1280570:CDS |
| GGCACAGATATCATTGAGTC+GGG | 0.519719 | 8_3:-19217308 | Msa1280570:CDS |
| ATGCCCCAAGGAAAGGGCAT+TGG | 0.524782 | 8_3:-19217184 | Msa1280570:CDS |
| ACAAGAGAGCTTGCCGAGGA+TGG | 0.527128 | 8_3:-19215387 | Msa1280570:CDS |
| GAAAGTCATGCCCCAAGGAA+AGG | 0.527463 | 8_3:-19217191 | Msa1280570:CDS |
| GCACACTGAAATCATGATCA+AGG | 0.534775 | 8_3:-19215331 | Msa1280570:CDS |
| GCATGGCTAGCAACTTGAGT+TGG | 0.543969 | 8_3:+19216811 | None:intergenic |
| TCACTTACCAAGAGCAACTT+GGG | 0.555778 | 8_3:+19215299 | None:intergenic |
| TGTCCAATGCCCTTTCCTTG+GGG | 0.558952 | 8_3:+19217181 | None:intergenic |
| ATTAGAGTTTAGAATTGCAA+CGG | 0.560593 | 8_3:+19217280 | None:intergenic |
| AACACCAGAATAACCATCCT+CGG | 0.562935 | 8_3:+19215374 | None:intergenic |
| TGGCACAGATATCATTGAGT+CGG | 0.575234 | 8_3:-19217309 | Msa1280570:CDS |
| CTTAAACAAGAATGACACAT+TGG | 0.607666 | 8_3:-19216710 | Msa1280570:CDS |
| CAGAAGAAAGTCATGCCCCA+AGG | 0.636413 | 8_3:-19217196 | Msa1280570:CDS |
| AAGGAAAGGGCATTGGACAG+AGG | 0.658250 | 8_3:-19217177 | Msa1280570:CDS |
| ACAGATATCATTGAGTCGGG+TGG | 0.660401 | 8_3:-19217305 | Msa1280570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATTAATTGATTGA+AGG | - | chr8_3:19216409-19216428 | Msa1280570:intron | 10.0% |
| !!! | ATTTATTTTTTGACTTATTA+AGG | - | chr8_3:19216621-19216640 | Msa1280570:intron | 10.0% |
| !! | ATAATTAATTAATAACAACA+AGG | + | chr8_3:19216744-19216763 | None:intergenic | 10.0% |
| !!! | TTTTTTTATTAATTGATTGA+AGG | - | chr8_3:19216409-19216428 | Msa1280570:intron | 10.0% |
| !!! | ATTTATTTTTTGACTTATTA+AGG | - | chr8_3:19216621-19216640 | Msa1280570:intron | 10.0% |
| !! | ATAATTAATTAATAACAACA+AGG | + | chr8_3:19216744-19216763 | None:intergenic | 10.0% |
| !! | AAATATTTCAAAAGAATTTG+TGG | - | chr8_3:19215786-19215805 | Msa1280570:intron | 15.0% |
| !!! | TGATTTTTGTAACTTTTATT+TGG | - | chr8_3:19216028-19216047 | Msa1280570:intron | 15.0% |
| !!! | TGTATTTTATTTGGTATTTT+TGG | - | chr8_3:19216064-19216083 | Msa1280570:intron | 15.0% |
| !! | ACAAAATTGAAAAATAACTA+CGG | + | chr8_3:19216274-19216293 | None:intergenic | 15.0% |
| !! | AAATATTTCAAAAGAATTTG+TGG | - | chr8_3:19215786-19215805 | Msa1280570:intron | 15.0% |
| !!! | TGATTTTTGTAACTTTTATT+TGG | - | chr8_3:19216028-19216047 | Msa1280570:intron | 15.0% |
| !!! | TGTATTTTATTTGGTATTTT+TGG | - | chr8_3:19216064-19216083 | Msa1280570:intron | 15.0% |
| !! | ACAAAATTGAAAAATAACTA+CGG | + | chr8_3:19216274-19216293 | None:intergenic | 15.0% |
| !! | TAAAAATAACTCTCAAACAT+AGG | + | chr8_3:19215518-19215537 | None:intergenic | 20.0% |
| !! | CATTTGTTTAGTTATGAATA+TGG | - | chr8_3:19215646-19215665 | Msa1280570:intron | 20.0% |
| !!! | TATATATAGGTTGTTTTTGA+AGG | - | chr8_3:19215732-19215751 | Msa1280570:intron | 20.0% |
| !!! | ATATATAGGTTGTTTTTGAA+GGG | - | chr8_3:19215733-19215752 | Msa1280570:intron | 20.0% |
| !!! | GTTCACTAATGTATTTTATT+TGG | - | chr8_3:19216055-19216074 | Msa1280570:intron | 20.0% |
| !! | AAAATTACACAAAATAACCA+CGG | + | chr8_3:19216393-19216412 | None:intergenic | 20.0% |
| !! | AAACAAACAAGGTAAAATTA+AGG | + | chr8_3:19216549-19216568 | None:intergenic | 20.0% |
| !! | ACATTTAGTAAAAACAAACA+AGG | + | chr8_3:19216560-19216579 | None:intergenic | 20.0% |
| !!! | TTGTTTTTACTAAATGTGAA+TGG | - | chr8_3:19216563-19216582 | Msa1280570:intron | 20.0% |
| !!! | TTTTTGACTTATTAAGGAAA+TGG | - | chr8_3:19216627-19216646 | Msa1280570:intron | 20.0% |
| !! | TAAAGAAAATGAGTTGTTAT+AGG | - | chr8_3:19216651-19216670 | Msa1280570:intron | 20.0% |
| !!! | GAAGTGTTATATGATTTATA+TGG | - | chr8_3:19216818-19216837 | Msa1280570:CDS | 20.0% |
| !!! | ATGTTTTTCTTTCCTATATT+GGG | - | chr8_3:19216943-19216962 | Msa1280570:intron | 20.0% |
| !! | TAAATCATAATACCCAATAT+AGG | + | chr8_3:19216958-19216977 | None:intergenic | 20.0% |
| !! | GTATTATGATTTACTTATGT+TGG | - | chr8_3:19216965-19216984 | Msa1280570:intron | 20.0% |
| !! | CTAAATATCTATAATCCATT+TGG | - | chr8_3:19217042-19217061 | Msa1280570:intron | 20.0% |
| !! | TCACTATACTAAAAAGTAAA+GGG | + | chr8_3:19217157-19217176 | None:intergenic | 20.0% |
| !! | ATCACTATACTAAAAAGTAA+AGG | + | chr8_3:19217158-19217177 | None:intergenic | 20.0% |
| !! | TAAAAATAACTCTCAAACAT+AGG | + | chr8_3:19215518-19215537 | None:intergenic | 20.0% |
| !! | CATTTGTTTAGTTATGAATA+TGG | - | chr8_3:19215646-19215665 | Msa1280570:intron | 20.0% |
| !!! | TATATATAGGTTGTTTTTGA+AGG | - | chr8_3:19215732-19215751 | Msa1280570:intron | 20.0% |
| !!! | ATATATAGGTTGTTTTTGAA+GGG | - | chr8_3:19215733-19215752 | Msa1280570:intron | 20.0% |
| !!! | GTTCACTAATGTATTTTATT+TGG | - | chr8_3:19216055-19216074 | Msa1280570:intron | 20.0% |
| !! | AAAATTACACAAAATAACCA+CGG | + | chr8_3:19216393-19216412 | None:intergenic | 20.0% |
| !! | AAACAAACAAGGTAAAATTA+AGG | + | chr8_3:19216549-19216568 | None:intergenic | 20.0% |
| !! | ACATTTAGTAAAAACAAACA+AGG | + | chr8_3:19216560-19216579 | None:intergenic | 20.0% |
| !!! | TTGTTTTTACTAAATGTGAA+TGG | - | chr8_3:19216563-19216582 | Msa1280570:intron | 20.0% |
| !!! | TTTTTGACTTATTAAGGAAA+TGG | - | chr8_3:19216627-19216646 | Msa1280570:intron | 20.0% |
| !! | TAAAGAAAATGAGTTGTTAT+AGG | - | chr8_3:19216651-19216670 | Msa1280570:intron | 20.0% |
| !!! | GAAGTGTTATATGATTTATA+TGG | - | chr8_3:19216818-19216837 | Msa1280570:CDS | 20.0% |
| !!! | ATGTTTTTCTTTCCTATATT+GGG | - | chr8_3:19216943-19216962 | Msa1280570:intron | 20.0% |
| !! | TAAATCATAATACCCAATAT+AGG | + | chr8_3:19216958-19216977 | None:intergenic | 20.0% |
| !! | GTATTATGATTTACTTATGT+TGG | - | chr8_3:19216965-19216984 | Msa1280570:intron | 20.0% |
| !! | CTAAATATCTATAATCCATT+TGG | - | chr8_3:19217042-19217061 | Msa1280570:intron | 20.0% |
| !! | TCACTATACTAAAAAGTAAA+GGG | + | chr8_3:19217157-19217176 | None:intergenic | 20.0% |
| !! | ATCACTATACTAAAAAGTAA+AGG | + | chr8_3:19217158-19217177 | None:intergenic | 20.0% |
| !! | ATTAGAGTTTAGAATTGCAA+CGG | + | chr8_3:19215354-19215373 | None:intergenic | 25.0% |
| ! | CACATTCATTCTCTATATAT+AGG | - | chr8_3:19215719-19215738 | Msa1280570:intron | 25.0% |
| !!! | TATATAGGTTGTTTTTGAAG+GGG | - | chr8_3:19215734-19215753 | Msa1280570:intron | 25.0% |
| !!! | TTGGTGGTTAAAGTATTTTT+GGG | + | chr8_3:19215845-19215864 | None:intergenic | 25.0% |
| !!! | TTTGGTGGTTAAAGTATTTT+TGG | + | chr8_3:19215846-19215865 | None:intergenic | 25.0% |
| !! | TTTCCATATCTTTCACATTT+TGG | + | chr8_3:19215864-19215883 | None:intergenic | 25.0% |
| ! | AGAATCTTTACTAAAAGTGA+TGG | - | chr8_3:19216228-19216247 | Msa1280570:intron | 25.0% |
| ! | ACAGATAGATATCTATTCAA+TGG | + | chr8_3:19216342-19216361 | None:intergenic | 25.0% |
| !! | CATGTTTTTCTTTCCTATAT+TGG | - | chr8_3:19216942-19216961 | Msa1280570:intron | 25.0% |
| !! | TATAATCCATTTGGTCATTT+TGG | - | chr8_3:19217051-19217070 | Msa1280570:intron | 25.0% |
| !! | ATTAGAGTTTAGAATTGCAA+CGG | + | chr8_3:19215354-19215373 | None:intergenic | 25.0% |
| ! | CACATTCATTCTCTATATAT+AGG | - | chr8_3:19215719-19215738 | Msa1280570:intron | 25.0% |
| !!! | TATATAGGTTGTTTTTGAAG+GGG | - | chr8_3:19215734-19215753 | Msa1280570:intron | 25.0% |
| !!! | TTGGTGGTTAAAGTATTTTT+GGG | + | chr8_3:19215845-19215864 | None:intergenic | 25.0% |
| !!! | TTTGGTGGTTAAAGTATTTT+TGG | + | chr8_3:19215846-19215865 | None:intergenic | 25.0% |
| !! | TTTCCATATCTTTCACATTT+TGG | + | chr8_3:19215864-19215883 | None:intergenic | 25.0% |
| ! | AGAATCTTTACTAAAAGTGA+TGG | - | chr8_3:19216228-19216247 | Msa1280570:intron | 25.0% |
| ! | ACAGATAGATATCTATTCAA+TGG | + | chr8_3:19216342-19216361 | None:intergenic | 25.0% |
| !! | CATGTTTTTCTTTCCTATAT+TGG | - | chr8_3:19216942-19216961 | Msa1280570:intron | 25.0% |
| !! | TATAATCCATTTGGTCATTT+TGG | - | chr8_3:19217051-19217070 | Msa1280570:intron | 25.0% |
| TGTGAAAGATATGGAAAAGA+AGG | - | chr8_3:19215867-19215886 | Msa1280570:intron | 30.0% | |
| ! | CAATGTGTCATTCTTGTTTA+AGG | + | chr8_3:19215923-19215942 | None:intergenic | 30.0% |
| CTTAAACAAGAATGACACAT+TGG | - | chr8_3:19215921-19215940 | Msa1280570:intron | 30.0% | |
| CAATGTAGAGTTGAAATTGT+TGG | + | chr8_3:19215965-19215984 | None:intergenic | 30.0% | |
| ATTGCATCAACTAACTAAGT+AGG | + | chr8_3:19216157-19216176 | None:intergenic | 30.0% | |
| !!! | TGTTAGTCATTGACTTTTTC+CGG | - | chr8_3:19216291-19216310 | Msa1280570:intron | 30.0% |
| GAATAGATATCTATCTGTGT+TGG | - | chr8_3:19216344-19216363 | Msa1280570:intron | 30.0% | |
| TAACCTATTGTACTCATTGT+AGG | - | chr8_3:19216766-19216785 | Msa1280570:CDS | 30.0% | |
| ATACCTACAATGAGTACAAT+AGG | + | chr8_3:19216772-19216791 | None:intergenic | 30.0% | |
| ACTTCTTCTGTTAATGATGT+TGG | + | chr8_3:19216803-19216822 | None:intergenic | 30.0% | |
| CAAACGTCAAATTCTCAAAT+TGG | + | chr8_3:19216856-19216875 | None:intergenic | 30.0% | |
| AAGTTTCCAAAATGACCAAA+TGG | + | chr8_3:19217060-19217079 | None:intergenic | 30.0% | |
| !! | ATTTGGTCATTTTGGAAACT+TGG | - | chr8_3:19217059-19217078 | Msa1280570:intron | 30.0% |
| TTTCTTCACTGAATTGAATC+TGG | - | chr8_3:19217210-19217229 | Msa1280570:CDS | 30.0% | |
| ! | TTATTCTGGTGTTGAGTTTA+TGG | - | chr8_3:19217267-19217286 | Msa1280570:CDS | 30.0% |
| TGTGAAAGATATGGAAAAGA+AGG | - | chr8_3:19215867-19215886 | Msa1280570:intron | 30.0% | |
| ! | CAATGTGTCATTCTTGTTTA+AGG | + | chr8_3:19215923-19215942 | None:intergenic | 30.0% |
| CTTAAACAAGAATGACACAT+TGG | - | chr8_3:19215921-19215940 | Msa1280570:intron | 30.0% | |
| CAATGTAGAGTTGAAATTGT+TGG | + | chr8_3:19215965-19215984 | None:intergenic | 30.0% | |
| ATTGCATCAACTAACTAAGT+AGG | + | chr8_3:19216157-19216176 | None:intergenic | 30.0% | |
| !!! | TGTTAGTCATTGACTTTTTC+CGG | - | chr8_3:19216291-19216310 | Msa1280570:intron | 30.0% |
| GAATAGATATCTATCTGTGT+TGG | - | chr8_3:19216344-19216363 | Msa1280570:intron | 30.0% | |
| TAACCTATTGTACTCATTGT+AGG | - | chr8_3:19216766-19216785 | Msa1280570:CDS | 30.0% | |
| ATACCTACAATGAGTACAAT+AGG | + | chr8_3:19216772-19216791 | None:intergenic | 30.0% | |
| ACTTCTTCTGTTAATGATGT+TGG | + | chr8_3:19216803-19216822 | None:intergenic | 30.0% | |
| CAAACGTCAAATTCTCAAAT+TGG | + | chr8_3:19216856-19216875 | None:intergenic | 30.0% | |
| AAGTTTCCAAAATGACCAAA+TGG | + | chr8_3:19217060-19217079 | None:intergenic | 30.0% | |
| !! | ATTTGGTCATTTTGGAAACT+TGG | - | chr8_3:19217059-19217078 | Msa1280570:intron | 30.0% |
| TTTCTTCACTGAATTGAATC+TGG | - | chr8_3:19217210-19217229 | Msa1280570:CDS | 30.0% | |
| ! | TTATTCTGGTGTTGAGTTTA+TGG | - | chr8_3:19217267-19217286 | Msa1280570:CDS | 30.0% |
| TTGAAGGGGATGAAAAAACA+TGG | - | chr8_3:19215748-19215767 | Msa1280570:intron | 35.0% | |
| GGGATGAAAAAACATGGAAA+GGG | - | chr8_3:19215754-19215773 | Msa1280570:intron | 35.0% | |
| !!! | GGTTAAAGTATTTTTGGGCA+TGG | + | chr8_3:19215840-19215859 | None:intergenic | 35.0% |
| ! | CCATATCTTTCACATTTTGG+TGG | + | chr8_3:19215861-19215880 | None:intergenic | 35.0% |
| CCACCAAAATGTGAAAGATA+TGG | - | chr8_3:19215858-19215877 | Msa1280570:intron | 35.0% | |
| TTTCAACTCTACATTGTTGC+TGG | - | chr8_3:19215969-19215988 | Msa1280570:intron | 35.0% | |
| ! | ATGCAATACTTTTGCAAGCA+TGG | - | chr8_3:19216170-19216189 | Msa1280570:intron | 35.0% |
| AAAAGTGATGGTAGTAGTTC+TGG | - | chr8_3:19216240-19216259 | Msa1280570:intron | 35.0% | |
| TGTTGAAATATACAAGTCCG+TGG | - | chr8_3:19216373-19216392 | Msa1280570:intron | 35.0% | |
| AAAATCTCACTAACTCACTC+AGG | - | chr8_3:19216517-19216536 | Msa1280570:intron | 35.0% | |
| TACTTAATGCCTAGTGGTTT+GGG | - | chr8_3:19216913-19216932 | Msa1280570:intron | 35.0% | |
| TATCTCATAAAGCCAAGAGA+AGG | - | chr8_3:19217087-19217106 | Msa1280570:intron | 35.0% | |
| ATGTTCAATTGTCCTTCTCT+TGG | + | chr8_3:19217102-19217121 | None:intergenic | 35.0% | |
| TCATGATTTCAGTGTGCATT+CGG | + | chr8_3:19217297-19217316 | None:intergenic | 35.0% | |
| TTGAAGGGGATGAAAAAACA+TGG | - | chr8_3:19215748-19215767 | Msa1280570:intron | 35.0% | |
| GGGATGAAAAAACATGGAAA+GGG | - | chr8_3:19215754-19215773 | Msa1280570:intron | 35.0% | |
| !!! | GGTTAAAGTATTTTTGGGCA+TGG | + | chr8_3:19215840-19215859 | None:intergenic | 35.0% |
| ! | CCATATCTTTCACATTTTGG+TGG | + | chr8_3:19215861-19215880 | None:intergenic | 35.0% |
| CCACCAAAATGTGAAAGATA+TGG | - | chr8_3:19215858-19215877 | Msa1280570:intron | 35.0% | |
| TTTCAACTCTACATTGTTGC+TGG | - | chr8_3:19215969-19215988 | Msa1280570:intron | 35.0% | |
| ! | ATGCAATACTTTTGCAAGCA+TGG | - | chr8_3:19216170-19216189 | Msa1280570:intron | 35.0% |
| AAAAGTGATGGTAGTAGTTC+TGG | - | chr8_3:19216240-19216259 | Msa1280570:intron | 35.0% | |
| TGTTGAAATATACAAGTCCG+TGG | - | chr8_3:19216373-19216392 | Msa1280570:intron | 35.0% | |
| AAAATCTCACTAACTCACTC+AGG | - | chr8_3:19216517-19216536 | Msa1280570:intron | 35.0% | |
| TACTTAATGCCTAGTGGTTT+GGG | - | chr8_3:19216913-19216932 | Msa1280570:intron | 35.0% | |
| TATCTCATAAAGCCAAGAGA+AGG | - | chr8_3:19217087-19217106 | Msa1280570:intron | 35.0% | |
| ATGTTCAATTGTCCTTCTCT+TGG | + | chr8_3:19217102-19217121 | None:intergenic | 35.0% | |
| TCATGATTTCAGTGTGCATT+CGG | + | chr8_3:19217297-19217316 | None:intergenic | 35.0% | |
| GAACAACAACAGGAGAAAAC+TGG | - | chr8_3:19215302-19215321 | Msa1280570:CDS | 40.0% | |
| TGGCACAGATATCATTGAGT+CGG | - | chr8_3:19215322-19215341 | Msa1280570:CDS | 40.0% | |
| GGGGATGAAAAAACATGGAA+AGG | - | chr8_3:19215753-19215772 | Msa1280570:intron | 40.0% | |
| CATGGCGAAGAATATTGTTG+TGG | - | chr8_3:19216188-19216207 | Msa1280570:intron | 40.0% | |
| GATACTGTGTACCACTAACA+CGG | + | chr8_3:19216320-19216339 | None:intergenic | 40.0% | |
| ! | TTGATTGAAGGTTGATCTCC+CGG | - | chr8_3:19216421-19216440 | Msa1280570:intron | 40.0% |
| AAGATCAAGTGACCGATTGA+GGG | + | chr8_3:19216468-19216487 | None:intergenic | 40.0% | |
| AGTGAGATTGAGAGAGAGTT+CGG | + | chr8_3:19216491-19216510 | None:intergenic | 40.0% | |
| ! | GTTTGCTACTTAATGCCTAG+TGG | - | chr8_3:19216907-19216926 | Msa1280570:intron | 40.0% |
| CTACTTAATGCCTAGTGGTT+TGG | - | chr8_3:19216912-19216931 | Msa1280570:intron | 40.0% | |
| ATGAATACACCCAAACCACT+AGG | + | chr8_3:19216925-19216944 | None:intergenic | 40.0% | |
| GGAAGATGTTATGCTAGAGA+AGG | + | chr8_3:19217136-19217155 | None:intergenic | 40.0% | |
| ! | CACTGAATTGAATCTGGAGT+TGG | - | chr8_3:19217216-19217235 | Msa1280570:CDS | 40.0% |
| AACACCAGAATAACCATCCT+CGG | + | chr8_3:19217260-19217279 | None:intergenic | 40.0% | |
| CATGATTTCAGTGTGCATTC+GGG | + | chr8_3:19217296-19217315 | None:intergenic | 40.0% | |
| GCACACTGAAATCATGATCA+AGG | - | chr8_3:19217300-19217319 | Msa1280570:CDS | 40.0% | |
| TCACTTACCAAGAGCAACTT+GGG | + | chr8_3:19217335-19217354 | None:intergenic | 40.0% | |
| GAACAACAACAGGAGAAAAC+TGG | - | chr8_3:19215302-19215321 | Msa1280570:CDS | 40.0% | |
| TGGCACAGATATCATTGAGT+CGG | - | chr8_3:19215322-19215341 | Msa1280570:CDS | 40.0% | |
| GGGGATGAAAAAACATGGAA+AGG | - | chr8_3:19215753-19215772 | Msa1280570:intron | 40.0% | |
| CATGGCGAAGAATATTGTTG+TGG | - | chr8_3:19216188-19216207 | Msa1280570:intron | 40.0% | |
| GATACTGTGTACCACTAACA+CGG | + | chr8_3:19216320-19216339 | None:intergenic | 40.0% | |
| ! | TTGATTGAAGGTTGATCTCC+CGG | - | chr8_3:19216421-19216440 | Msa1280570:intron | 40.0% |
| AAGATCAAGTGACCGATTGA+GGG | + | chr8_3:19216468-19216487 | None:intergenic | 40.0% | |
| AGTGAGATTGAGAGAGAGTT+CGG | + | chr8_3:19216491-19216510 | None:intergenic | 40.0% | |
| ! | GTTTGCTACTTAATGCCTAG+TGG | - | chr8_3:19216907-19216926 | Msa1280570:intron | 40.0% |
| CTACTTAATGCCTAGTGGTT+TGG | - | chr8_3:19216912-19216931 | Msa1280570:intron | 40.0% | |
| ATGAATACACCCAAACCACT+AGG | + | chr8_3:19216925-19216944 | None:intergenic | 40.0% | |
| GGAAGATGTTATGCTAGAGA+AGG | + | chr8_3:19217136-19217155 | None:intergenic | 40.0% | |
| ! | CACTGAATTGAATCTGGAGT+TGG | - | chr8_3:19217216-19217235 | Msa1280570:CDS | 40.0% |
| AACACCAGAATAACCATCCT+CGG | + | chr8_3:19217260-19217279 | None:intergenic | 40.0% | |
| CATGATTTCAGTGTGCATTC+GGG | + | chr8_3:19217296-19217315 | None:intergenic | 40.0% | |
| GCACACTGAAATCATGATCA+AGG | - | chr8_3:19217300-19217319 | Msa1280570:CDS | 40.0% | |
| TCACTTACCAAGAGCAACTT+GGG | + | chr8_3:19217335-19217354 | None:intergenic | 40.0% | |
| GGCACAGATATCATTGAGTC+GGG | - | chr8_3:19215323-19215342 | Msa1280570:CDS | 45.0% | |
| ACAGATATCATTGAGTCGGG+TGG | - | chr8_3:19215326-19215345 | Msa1280570:CDS | 45.0% | |
| AAAGTCATGCCCCAAGGAAA+GGG | - | chr8_3:19215441-19215460 | Msa1280570:CDS | 45.0% | |
| AAAAACATGGAAAGGGACGC+TGG | - | chr8_3:19215761-19215780 | Msa1280570:intron | 45.0% | |
| !! | GATGGTAGTAGTTCTGGTGT+TGG | - | chr8_3:19216246-19216265 | Msa1280570:intron | 45.0% |
| ! | TTTTCCGGTTACCGTGTTAG+TGG | - | chr8_3:19216306-19216325 | Msa1280570:intron | 45.0% |
| TGTACCACTAACACGGTAAC+CGG | + | chr8_3:19216313-19216332 | None:intergenic | 45.0% | |
| ATCGATGCAGCTATTGAGTC+CGG | + | chr8_3:19216443-19216462 | None:intergenic | 45.0% | |
| GAAGATCAAGTGACCGATTG+AGG | + | chr8_3:19216469-19216488 | None:intergenic | 45.0% | |
| ! | TTTTACAAGAGAGCTTGCCG+AGG | - | chr8_3:19217240-19217259 | Msa1280570:CDS | 45.0% |
| GGCACAGATATCATTGAGTC+GGG | - | chr8_3:19215323-19215342 | Msa1280570:CDS | 45.0% | |
| ACAGATATCATTGAGTCGGG+TGG | - | chr8_3:19215326-19215345 | Msa1280570:CDS | 45.0% | |
| AAAGTCATGCCCCAAGGAAA+GGG | - | chr8_3:19215441-19215460 | Msa1280570:CDS | 45.0% | |
| AAAAACATGGAAAGGGACGC+TGG | - | chr8_3:19215761-19215780 | Msa1280570:intron | 45.0% | |
| !! | GATGGTAGTAGTTCTGGTGT+TGG | - | chr8_3:19216246-19216265 | Msa1280570:intron | 45.0% |
| ! | TTTTCCGGTTACCGTGTTAG+TGG | - | chr8_3:19216306-19216325 | Msa1280570:intron | 45.0% |
| TGTACCACTAACACGGTAAC+CGG | + | chr8_3:19216313-19216332 | None:intergenic | 45.0% | |
| ATCGATGCAGCTATTGAGTC+CGG | + | chr8_3:19216443-19216462 | None:intergenic | 45.0% | |
| GAAGATCAAGTGACCGATTG+AGG | + | chr8_3:19216469-19216488 | None:intergenic | 45.0% | |
| ! | TTTTACAAGAGAGCTTGCCG+AGG | - | chr8_3:19217240-19217259 | Msa1280570:CDS | 45.0% |
| CTTGGGGCATGACTTTCTTC+TGG | + | chr8_3:19215437-19215456 | None:intergenic | 50.0% | |
| CAGAAGAAAGTCATGCCCCA+AGG | - | chr8_3:19215435-19215454 | Msa1280570:CDS | 50.0% | |
| GAAAGTCATGCCCCAAGGAA+AGG | - | chr8_3:19215440-19215459 | Msa1280570:CDS | 50.0% | |
| TGTCCAATGCCCTTTCCTTG+GGG | + | chr8_3:19215453-19215472 | None:intergenic | 50.0% | |
| CTGTCCAATGCCCTTTCCTT+GGG | + | chr8_3:19215454-19215473 | None:intergenic | 50.0% | |
| TCTGTCCAATGCCCTTTCCT+TGG | + | chr8_3:19215455-19215474 | None:intergenic | 50.0% | |
| !! | AAGGAAAGGGCATTGGACAG+AGG | - | chr8_3:19215454-19215473 | Msa1280570:CDS | 50.0% |
| GCATGGCTAGCAACTTGAGT+TGG | + | chr8_3:19215823-19215842 | None:intergenic | 50.0% | |
| TCGATGCAGCTATTGAGTCC+GGG | + | chr8_3:19216442-19216461 | None:intergenic | 50.0% | |
| ! | CTGCATCGATCTCCCTCAAT+CGG | - | chr8_3:19216453-19216472 | Msa1280570:intron | 50.0% |
| CTTGCCGAGGATGGTTATTC+TGG | - | chr8_3:19217253-19217272 | Msa1280570:CDS | 50.0% | |
| CTTGGGGCATGACTTTCTTC+TGG | + | chr8_3:19215437-19215456 | None:intergenic | 50.0% | |
| CAGAAGAAAGTCATGCCCCA+AGG | - | chr8_3:19215435-19215454 | Msa1280570:CDS | 50.0% | |
| GAAAGTCATGCCCCAAGGAA+AGG | - | chr8_3:19215440-19215459 | Msa1280570:CDS | 50.0% | |
| TGTCCAATGCCCTTTCCTTG+GGG | + | chr8_3:19215453-19215472 | None:intergenic | 50.0% | |
| CTGTCCAATGCCCTTTCCTT+GGG | + | chr8_3:19215454-19215473 | None:intergenic | 50.0% | |
| TCTGTCCAATGCCCTTTCCT+TGG | + | chr8_3:19215455-19215474 | None:intergenic | 50.0% | |
| !! | AAGGAAAGGGCATTGGACAG+AGG | - | chr8_3:19215454-19215473 | Msa1280570:CDS | 50.0% |
| GCATGGCTAGCAACTTGAGT+TGG | + | chr8_3:19215823-19215842 | None:intergenic | 50.0% | |
| TCGATGCAGCTATTGAGTCC+GGG | + | chr8_3:19216442-19216461 | None:intergenic | 50.0% | |
| ! | CTGCATCGATCTCCCTCAAT+CGG | - | chr8_3:19216453-19216472 | Msa1280570:intron | 50.0% |
| CTTGCCGAGGATGGTTATTC+TGG | - | chr8_3:19217253-19217272 | Msa1280570:CDS | 50.0% | |
| ! | ATGCCCCAAGGAAAGGGCAT+TGG | - | chr8_3:19215447-19215466 | Msa1280570:CDS | 55.0% |
| ACAAGAGAGCTTGCCGAGGA+TGG | - | chr8_3:19217244-19217263 | Msa1280570:CDS | 55.0% | |
| ACTCGCACCCAAGTTGCTCT+TGG | - | chr8_3:19217325-19217344 | Msa1280570:CDS | 55.0% | |
| ! | ATGCCCCAAGGAAAGGGCAT+TGG | - | chr8_3:19215447-19215466 | Msa1280570:CDS | 55.0% |
| ACAAGAGAGCTTGCCGAGGA+TGG | - | chr8_3:19217244-19217263 | Msa1280570:CDS | 55.0% | |
| ACTCGCACCCAAGTTGCTCT+TGG | - | chr8_3:19217325-19217344 | Msa1280570:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 19215299 | 19217354 | 19215299 | ID=Msa1280570;Name=Msa1280570 |
| chr8_3 | mRNA | 19215299 | 19217354 | 19215299 | ID=Msa1280570-mRNA-1;Parent=Msa1280570;Name=Msa1280570-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0|0|1|1|1|3|0|194 |
| chr8_3 | exon | 19217167 | 19217354 | 19217167 | ID=Msa1280570-mRNA-1:exon:7187;Parent=Msa1280570-mRNA-1 |
| chr8_3 | exon | 19216702 | 19216912 | 19216702 | ID=Msa1280570-mRNA-1:exon:7186;Parent=Msa1280570-mRNA-1 |
| chr8_3 | exon | 19215299 | 19215484 | 19215299 | ID=Msa1280570-mRNA-1:exon:7185;Parent=Msa1280570-mRNA-1 |
| chr8_3 | CDS | 19217167 | 19217354 | 19217167 | ID=Msa1280570-mRNA-1:cds;Parent=Msa1280570-mRNA-1 |
| chr8_3 | CDS | 19216702 | 19216912 | 19216702 | ID=Msa1280570-mRNA-1:cds;Parent=Msa1280570-mRNA-1 |
| chr8_3 | CDS | 19215299 | 19215484 | 19215299 | ID=Msa1280570-mRNA-1:cds;Parent=Msa1280570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
