AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1280770

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1280770 MtrunA17_Chr8g0351051 98.333 240 4 0 1 240 12 251 3.61e-179 491
Msa1280770 MtrunA17_Chr3g0122251 48.780 246 107 7 1 239 12 245 5.36e-66 204
Msa1280770 MtrunA17_Chr6g0455511 48.163 245 116 7 1 240 12 250 2.52e-64 200
Msa1280770 MtrunA17_Chr7g0220111 46.122 245 120 7 1 240 12 249 2.10e-60 190
Msa1280770 MtrunA17_Chr7g0246401 70.370 135 30 3 110 240 1 129 4.53e-60 185
Msa1280770 MtrunA17_Chr5g0420091 61.963 163 59 2 1 161 12 173 9.95e-60 187
Msa1280770 MtrunA17_Chr1g0204111 44.495 218 101 2 2 218 29 227 2.10e-55 177
Msa1280770 MtrunA17_Chr4g0061671 56.790 162 67 3 1 161 12 171 1.81e-52 168
Msa1280770 MtrunA17_Chr6g0474371 56.962 158 66 2 1 156 12 169 9.38e-52 166
Msa1280770 MtrunA17_Chr4g0061691 56.051 157 68 1 1 156 12 168 5.46e-51 166
Msa1280770 MtrunA17_Chr2g0284911 48.125 160 83 0 1 160 27 186 2.60e-47 157
Msa1280770 MtrunA17_Chr8g0366231 44.498 209 107 5 1 204 12 216 4.86e-46 153
Msa1280770 MtrunA17_Chr3g0097101 49.375 160 81 0 1 160 27 186 1.25e-45 152
Msa1280770 MtrunA17_Chr8g0380021 43.229 192 102 2 1 191 28 213 1.58e-45 152
Msa1280770 MtrunA17_Chr5g0420081 44.279 201 108 4 1 198 12 211 1.50e-43 147
Msa1280770 MtrunA17_Chr4g0057151 51.220 164 64 3 1 156 12 167 2.51e-43 145
Msa1280770 MtrunA17_Chr8g0351031 49.682 157 78 1 1 156 12 168 4.49e-43 145
Msa1280770 MtrunA17_Chr7g0246431 50.000 156 78 0 1 156 12 167 5.74e-43 144
Msa1280770 MtrunA17_Chr3g0077501 42.781 187 97 1 1 177 12 198 7.25e-43 144
Msa1280770 MtrunA17_Chr8g0351041 48.667 150 76 1 1 149 12 161 6.65e-41 137
Msa1280770 MtrunA17_Chr2g0279821 38.496 226 126 5 1 222 12 228 1.03e-40 139
Msa1280770 MtrunA17_Chr7g0220121 47.826 161 73 3 1 156 12 166 6.97e-39 135
Msa1280770 MtrunA17_Chr5g0411691 44.595 148 74 2 1 145 12 154 1.61e-35 126
Msa1280770 MtrunA17_Chr1g0164791 36.161 224 119 5 1 215 12 220 8.32e-35 124
Msa1280770 MtrunA17_Chr8g0377551 37.766 188 105 4 53 239 3 179 3.25e-34 121
Msa1280770 MtrunA17_Chr4g0049541 45.270 148 74 2 1 145 12 155 4.38e-34 122
Msa1280770 MtrunA17_Chr4g0020221 44.848 165 85 2 1 161 12 174 3.45e-31 115
Msa1280770 MtrunA17_Chr4g0018421 42.593 162 85 3 1 157 12 170 1.67e-30 112
Msa1280770 MtrunA17_Chr3g0125241 44.118 136 69 2 1 134 37 167 9.43e-30 110
Msa1280770 MtrunA17_Chr5g0427401 39.583 192 97 5 1 188 12 188 8.36e-29 108
Msa1280770 MtrunA17_Chr5g0412461 40.541 185 99 4 1 180 12 190 1.05e-28 108
Msa1280770 MtrunA17_Chr5g0412271 40.237 169 87 3 1 162 12 173 3.13e-28 107
Msa1280770 MtrunA17_Chr4g0049901 36.410 195 108 5 1 188 38 223 4.37e-28 107
Msa1280770 MtrunA17_Chr3g0142191 34.956 226 119 7 1 207 12 228 3.75e-27 104
Msa1280770 MtrunA17_Chr5g0404951 38.596 171 86 5 1 161 12 173 2.26e-26 102
Msa1280770 MtrunA17_Chr1g0159661 39.333 150 82 3 1 146 12 156 4.76e-25 97.4
Msa1280770 MtrunA17_Chr8g0377561 95.652 46 2 0 1 46 12 57 3.50e-24 92.8
Msa1280770 MtrunA17_Chr7g0246381 93.750 48 3 0 1 48 12 59 1.83e-23 90.1
Msa1280770 MtrunA17_Chr2g0308251 83.333 48 8 0 1 48 12 59 3.64e-22 87.0
Msa1280770 MtrunA17_Chr1g0173161 83.333 48 8 0 1 48 12 59 1.68e-19 80.1
Msa1280770 MtrunA17_Chr2g0308271 40.741 108 64 0 53 160 36 143 1.17e-18 81.3
Msa1280770 MtrunA17_Chr1g0166611 44.762 105 48 3 5 109 20 114 1.63e-18 79.0
Msa1280770 MtrunA17_Chr5g0427921 70.833 48 14 0 1 48 12 59 1.56e-16 71.6
Msa1280770 MtrunA17_Chr3g0134451 34.940 166 86 7 1 149 12 172 3.79e-16 76.3
Msa1280770 MtrunA17_Chr4g0044071 65.957 47 16 0 1 47 12 58 5.84e-16 71.6
Msa1280770 MtrunA17_Chr2g0292791 36.306 157 84 5 2 151 20 167 6.69e-16 74.3
Msa1280770 MtrunA17_Chr1g0208581 34.437 151 81 4 2 144 20 160 8.73e-16 73.9
Msa1280770 MtrunA17_Chr5g0425191 68.085 47 15 0 1 47 12 58 1.78e-15 70.1
Msa1280770 MtrunA17_Chr7g0246391 53.521 71 30 3 32 101 26 94 2.67e-15 69.7
Msa1280770 MtrunA17_Chr3g0089141 40.000 95 55 1 2 96 20 112 9.88e-15 70.9
Msa1280770 MtrunA17_Chr1g0208561 50.000 68 32 1 2 69 20 85 1.04e-14 70.9
Msa1280770 MtrunA17_Chr2g0325971 33.113 151 83 5 2 144 20 160 1.10e-14 70.9
Msa1280770 MtrunA17_Chr5g0419601 54.412 68 29 1 2 69 20 85 3.04e-14 69.7
Msa1280770 MtrunA17_Chr4g0018951 57.407 54 23 0 5 58 26 79 4.16e-14 68.2
Msa1280770 MtrunA17_Chr2g0317451 52.941 68 30 1 2 69 20 85 6.24e-14 68.9
Msa1280770 MtrunA17_Chr2g0317481 52.941 68 30 1 2 69 20 85 6.63e-14 68.9
Msa1280770 MtrunA17_Chr3g0099411 54.386 57 26 0 2 58 20 76 7.12e-14 68.6
Msa1280770 MtrunA17_Chr8g0376821 56.604 53 23 0 6 58 17 69 7.40e-14 67.8
Msa1280770 MtrunA17_Chr3g0099421 35.669 157 85 5 2 151 45 192 1.06e-13 68.6
Msa1280770 MtrunA17_Chr1g0206721 54.386 57 26 0 2 58 20 76 1.16e-13 68.2
Msa1280770 MtrunA17_Chr1g0169761 56.604 53 23 0 6 58 17 69 1.27e-13 67.0
Msa1280770 MtrunA17_Chr1g0206701 54.386 57 26 0 2 58 20 76 1.47e-13 67.8
Msa1280770 MtrunA17_Chr8g0355091 33.333 156 90 4 2 151 20 167 1.91e-13 67.8
Msa1280770 MtrunA17_Chr8g0379021 51.724 58 28 0 1 58 22 79 2.28e-13 66.2
Msa1280770 MtrunA17_Chr1g0187361 54.386 57 26 0 2 58 20 76 2.84e-13 67.0
Msa1280770 MtrunA17_Chr1g0149391 56.140 57 25 0 2 58 20 76 3.33e-13 67.0
Msa1280770 MtrunA17_Chr5g0422941 51.471 68 32 1 2 69 20 86 6.48e-13 66.2
Msa1280770 MtrunA17_Chr1g0188671 54.386 57 26 0 2 58 58 114 6.50e-13 66.6
Msa1280770 MtrunA17_Chr1g0206691 52.632 57 27 0 2 58 3 59 6.58e-13 65.9
Msa1280770 MtrunA17_Chr4g0074101 52.830 53 25 0 6 58 17 69 8.37e-13 65.1
Msa1280770 MtrunA17_Chr1g0187351 50.000 66 32 1 2 67 3 67 9.68e-13 61.6
Msa1280770 MtrunA17_Chr3g0119901 47.222 72 34 2 3 72 21 90 1.21e-12 64.7
Msa1280770 MtrunA17_Chr1g0175611 54.717 53 24 0 6 58 17 69 1.31e-12 63.9
Msa1280770 MtrunA17_Chr5g0422421 51.471 68 32 1 2 69 20 86 1.55e-12 65.1
Msa1280770 MtrunA17_Chr1g0206991 50.877 57 28 0 2 58 20 76 1.98e-12 63.9
Msa1280770 MtrunA17_Chr8g0357771 58.696 46 19 0 2 47 13 58 2.29e-12 63.5
Msa1280770 MtrunA17_Chr1g0180591 52.830 53 25 0 6 58 17 69 3.25e-12 63.2
Msa1280770 MtrunA17_Chr2g0333981 51.724 58 28 0 1 58 22 79 5.82e-12 62.4
Msa1280770 MtrunA17_Chr1g0175601 32.283 127 78 2 6 124 17 143 5.87e-12 62.4
Msa1280770 MtrunA17_Chr2g0300441 50.877 57 28 0 2 58 20 76 9.24e-12 62.8
Msa1280770 MtrunA17_Chr3g0085241 44.444 72 36 2 3 72 53 122 1.12e-11 62.8
Msa1280770 MtrunA17_Chr3g0089151 35.455 110 65 3 2 108 20 126 1.26e-11 60.5
Msa1280770 MtrunA17_Chr4g0052061 56.250 48 21 0 1 48 12 59 1.47e-11 60.8
Msa1280770 MtrunA17_Chr4g0071601 52.830 53 25 0 6 58 27 79 1.49e-11 61.6
Msa1280770 MtrunA17_Chr2g0300421 32.593 135 71 5 5 130 23 146 3.10e-11 60.5
Msa1280770 MtrunA17_Chr3g0111841 49.231 65 32 1 2 66 7 70 5.45e-11 57.0
Msa1280770 MtrunA17_Chr5g0427961 31.818 110 64 3 54 160 9 110 9.78e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1280770 AT2G45650.1 65.164 244 78 5 1 240 12 252 1.25e-104 303
Msa1280770 AT3G61120.1 55.602 241 94 6 1 236 12 244 1.33e-78 237
Msa1280770 AT3G02310.1 47.521 242 122 3 1 240 12 250 1.11e-66 207
Msa1280770 AT5G15800.1 46.058 241 128 2 1 240 12 251 1.83e-63 198
Msa1280770 AT1G24260.2 47.368 247 108 7 1 239 12 244 1.43e-61 194
Msa1280770 AT5G15800.2 50.237 211 103 2 1 210 12 221 2.36e-61 193
Msa1280770 AT1G24260.1 47.951 244 110 7 1 239 12 243 1.09e-60 191
Msa1280770 AT3G02310.2 60.625 160 62 1 1 159 12 171 7.09e-59 185
Msa1280770 AT1G24260.3 45.749 247 98 9 1 239 12 230 2.42e-55 177
Msa1280770 AT2G03710.1 41.569 255 126 7 1 240 12 258 3.38e-55 177
Msa1280770 AT2G03710.2 41.961 255 124 8 1 240 12 257 1.85e-54 176
Msa1280770 AT2G03710.3 52.469 162 74 2 1 160 12 172 2.65e-50 163
Msa1280770 AT3G58780.5 48.555 173 88 1 1 172 33 205 2.47e-48 160
Msa1280770 AT3G58780.1 48.555 173 88 1 1 172 27 199 2.91e-48 159
Msa1280770 AT1G26310.1 45.370 216 108 5 1 210 12 223 3.74e-48 159
Msa1280770 AT2G42830.1 50.000 160 80 0 1 160 27 186 1.92e-47 157
Msa1280770 AT1G69120.2 44.749 219 113 5 1 214 12 227 3.74e-47 156
Msa1280770 AT1G69120.1 53.797 158 70 3 1 156 12 168 2.96e-46 154
Msa1280770 AT5G60910.1 50.000 162 80 1 1 161 12 173 9.49e-46 153
Msa1280770 AT4G18960.1 40.948 232 116 5 1 229 28 241 1.53e-45 152
Msa1280770 AT2G42830.2 49.383 162 80 1 1 160 27 188 2.09e-45 152
Msa1280770 AT4G22950.2 50.932 161 78 1 1 161 12 171 6.71e-45 148
Msa1280770 AT4G22950.3 51.220 164 79 1 1 164 12 174 1.11e-44 149
Msa1280770 AT4G22950.1 51.220 164 79 1 1 164 12 174 1.11e-44 149
Msa1280770 AT3G58780.2 46.821 173 84 2 1 172 27 192 3.03e-44 149
Msa1280770 AT4G09960.1 42.188 192 99 2 1 180 12 203 3.13e-43 146
Msa1280770 AT4G09960.6 42.188 192 99 2 1 180 13 204 3.22e-43 146
Msa1280770 AT5G62165.3 48.428 159 82 0 1 159 12 170 3.30e-43 145
Msa1280770 AT5G62165.1 48.428 159 82 0 1 159 12 170 3.30e-43 145
Msa1280770 AT5G62165.2 48.428 159 82 0 1 159 12 170 3.30e-43 145
Msa1280770 AT4G09960.5 42.188 192 99 2 1 180 22 213 3.62e-43 146
Msa1280770 AT3G58780.3 42.929 198 87 2 1 172 27 224 7.79e-43 146
Msa1280770 AT4G09960.3 42.188 192 99 2 1 180 38 229 1.40e-42 145
Msa1280770 AT5G62165.17 50.350 143 71 0 1 143 12 154 1.61e-42 142
Msa1280770 AT5G62165.12 50.350 143 71 0 1 143 12 154 1.61e-42 142
Msa1280770 AT5G62165.11 50.350 143 71 0 1 143 12 154 1.61e-42 142
Msa1280770 AT2G45660.1 49.068 161 72 2 1 156 12 167 2.01e-42 143
Msa1280770 AT3G58780.4 40.777 206 88 2 1 172 27 232 1.65e-41 143
Msa1280770 AT2G45660.2 50.000 150 65 2 1 145 12 156 5.97e-41 138
Msa1280770 AT5G62165.6 49.630 135 68 0 1 135 12 146 1.02e-39 134
Msa1280770 AT5G62165.9 49.630 135 68 0 1 135 12 146 1.02e-39 134
Msa1280770 AT5G62165.7 49.630 135 68 0 1 135 12 146 1.02e-39 134
Msa1280770 AT5G62165.8 49.630 135 68 0 1 135 12 146 1.02e-39 134
Msa1280770 AT5G62165.13 49.630 135 68 0 1 135 12 146 1.02e-39 134
Msa1280770 AT4G09960.4 41.327 196 99 3 1 180 107 302 8.65e-39 137
Msa1280770 AT4G11880.2 50.685 146 70 2 1 145 12 156 1.46e-38 132
Msa1280770 AT4G11880.3 50.685 146 70 2 1 145 12 156 1.46e-38 132
Msa1280770 AT5G62165.10 48.551 138 71 0 1 138 12 149 4.50e-38 132
Msa1280770 AT5G62165.4 48.551 138 71 0 1 138 12 149 4.50e-38 132
Msa1280770 AT4G09960.2 48.092 131 68 0 1 131 12 142 7.08e-38 132
Msa1280770 AT3G57230.1 46.154 143 76 1 2 144 13 154 9.56e-37 129
Msa1280770 AT3G57230.4 46.154 143 76 1 2 144 13 154 9.56e-37 129
Msa1280770 AT4G11880.4 50.617 162 78 2 1 161 12 172 1.85e-36 128
Msa1280770 AT4G11880.1 50.617 162 78 2 1 161 12 172 1.85e-36 128
Msa1280770 AT3G30260.1 50.000 146 60 4 1 139 12 151 2.03e-36 129
Msa1280770 AT5G13790.2 49.057 159 73 2 1 157 12 164 3.50e-36 129
Msa1280770 AT2G14210.1 36.638 232 127 5 1 228 12 227 1.90e-35 126
Msa1280770 AT2G14210.2 36.638 232 127 5 1 228 12 227 2.34e-35 126
Msa1280770 AT5G13790.1 48.750 160 69 3 1 157 12 161 8.02e-35 125
Msa1280770 AT3G57230.2 47.015 134 70 1 2 135 13 145 1.55e-34 121
Msa1280770 AT4G37940.1 43.448 145 81 1 1 145 12 155 4.43e-34 122
Msa1280770 AT4G24540.1 40.291 206 115 4 1 201 12 214 5.03e-34 122
Msa1280770 AT2G22630.1 45.890 146 77 2 1 145 12 156 1.17e-33 121
Msa1280770 AT2G22630.2 45.890 146 77 2 1 145 12 156 1.17e-33 121
Msa1280770 AT5G51860.2 41.718 163 90 2 1 160 12 172 3.31e-33 119
Msa1280770 AT5G51860.1 41.975 162 89 2 1 159 12 171 7.38e-33 119
Msa1280770 AT5G51870.1 35.961 203 114 4 1 201 12 200 9.61e-32 115
Msa1280770 AT4G37940.4 43.919 148 81 2 1 147 12 158 1.42e-31 115
Msa1280770 AT4G37940.3 45.802 131 70 1 1 131 12 141 2.56e-31 114
Msa1280770 AT5G51870.3 41.772 158 89 2 1 156 22 178 5.43e-31 114
Msa1280770 AT5G51870.4 41.772 158 89 2 1 156 12 168 5.48e-31 114
Msa1280770 AT3G57390.3 41.341 179 96 4 1 170 12 190 2.83e-30 112
Msa1280770 AT3G57390.1 41.341 179 96 4 1 170 12 190 4.88e-30 112
Msa1280770 AT2G22540.3 45.342 161 80 3 1 157 12 168 6.54e-30 112
Msa1280770 AT2G22540.1 45.342 161 80 3 1 157 12 168 6.54e-30 112
Msa1280770 AT5G51870.2 43.066 137 75 2 1 135 12 147 6.49e-28 105
Msa1280770 AT5G51870.5 43.066 137 75 2 1 135 35 170 2.19e-27 104
Msa1280770 AT1G71692.1 37.561 205 106 6 1 194 12 205 3.00e-27 104
Msa1280770 AT5G10140.4 42.208 154 77 4 1 150 12 157 3.50e-27 103
Msa1280770 AT3G54340.1 38.824 170 83 3 1 161 12 169 5.04e-27 104
Msa1280770 AT2G22540.2 44.099 161 77 4 1 157 12 163 6.44e-27 103
Msa1280770 AT5G23260.2 39.873 158 90 2 1 156 12 166 6.93e-27 104
Msa1280770 AT5G23260.4 39.873 158 90 2 1 156 28 182 1.29e-26 103
Msa1280770 AT5G62165.14 60.241 83 29 1 1 83 12 90 1.56e-26 99.4
Msa1280770 AT5G20240.1 37.423 163 91 3 1 161 12 165 1.64e-26 102
Msa1280770 AT5G10140.2 42.553 141 72 3 1 140 12 144 7.22e-26 99.8
Msa1280770 AT5G10140.1 42.553 141 72 3 1 140 12 144 8.43e-26 100
Msa1280770 AT5G10140.3 42.553 141 72 3 1 140 12 144 1.18e-25 99.4
Msa1280770 AT5G20240.2 41.176 136 73 2 1 134 12 142 5.51e-25 96.7
Msa1280770 AT5G23260.1 39.241 158 86 3 1 156 28 177 2.11e-23 95.5
Msa1280770 AT5G23260.3 40.288 139 78 2 1 137 12 147 3.85e-23 94.4
Msa1280770 AT5G65070.1 34.197 193 117 4 1 192 12 195 3.40e-21 88.2
Msa1280770 AT5G65050.2 35.669 157 92 2 1 156 12 160 5.61e-21 87.0
Msa1280770 AT5G65080.3 39.490 157 83 4 1 156 19 164 6.71e-21 87.0
Msa1280770 AT5G65060.3 34.395 157 94 2 1 156 12 160 8.54e-21 87.0
Msa1280770 AT5G65060.1 34.395 157 94 2 1 156 12 160 1.15e-20 86.7
Msa1280770 AT5G65050.3 35.669 157 92 2 1 156 12 160 1.57e-20 86.3
Msa1280770 AT1G31140.1 39.860 143 71 4 1 135 12 147 5.67e-20 85.1
Msa1280770 AT1G31140.2 39.855 138 80 2 1 135 12 149 8.84e-20 84.7
Msa1280770 AT5G65050.1 35.862 145 84 2 1 144 12 148 1.14e-19 83.6
Msa1280770 AT5G65070.2 31.944 216 122 5 1 192 12 226 3.55e-19 83.6
Msa1280770 AT5G65050.5 36.306 157 80 3 1 156 12 149 5.18e-19 82.0
Msa1280770 AT1G77080.11 38.854 157 87 3 1 156 12 160 1.11e-18 80.9
Msa1280770 AT1G77080.4 38.854 157 87 3 1 156 12 160 1.99e-18 80.9
Msa1280770 AT1G77080.5 38.854 157 87 3 1 156 12 160 2.41e-18 80.1
Msa1280770 AT1G69120.3 45.714 105 55 2 53 156 3 106 2.83e-18 80.1
Msa1280770 AT5G65070.5 36.025 161 79 4 1 137 12 172 2.88e-18 80.5
Msa1280770 AT5G65080.2 38.028 142 80 3 1 142 19 152 3.72e-18 80.1
Msa1280770 AT5G65060.2 33.758 157 84 3 1 156 12 149 4.85e-18 79.3
Msa1280770 AT5G65070.4 37.956 137 76 3 1 136 12 140 5.87e-18 78.2
Msa1280770 AT1G77080.2 35.256 156 90 2 1 156 12 156 1.79e-17 78.2
Msa1280770 AT5G60910.2 37.615 109 68 0 53 161 3 111 1.20e-16 75.5
Msa1280770 AT5G65070.3 29.778 225 116 5 1 192 12 227 2.58e-16 75.9
Msa1280770 AT1G77080.12 35.172 145 83 2 1 145 12 145 2.88e-16 73.6
Msa1280770 AT1G22130.1 54.412 68 29 1 1 68 12 77 1.59e-15 75.1
Msa1280770 AT1G77080.8 33.702 181 90 3 1 156 12 187 2.22e-15 73.2
Msa1280770 AT1G77980.1 36.735 147 85 5 1 146 12 151 5.88e-15 73.2
Msa1280770 AT4G18960.3 30.556 180 104 5 53 229 66 227 6.00e-15 72.0
Msa1280770 AT4G18960.2 30.556 180 104 5 53 229 66 227 6.00e-15 72.0
Msa1280770 AT4G18960.4 33.028 109 73 0 53 161 66 174 2.50e-14 69.3
Msa1280770 AT1G01530.1 55.357 56 25 0 2 57 18 73 8.52e-14 68.9
Msa1280770 AT1G65360.1 35.052 97 60 1 5 98 21 117 3.29e-13 67.0
Msa1280770 AT4G36590.1 47.887 71 37 0 1 71 17 87 9.61e-13 66.2
Msa1280770 AT5G60440.1 51.724 58 28 0 1 58 17 74 1.13e-12 66.6
Msa1280770 AT2G34440.1 50.909 55 27 0 6 60 17 71 1.30e-12 64.3
Msa1280770 AT1G72350.1 56.364 55 22 1 6 60 58 110 2.19e-12 64.7
Msa1280770 AT1G77950.3 34.286 175 92 6 1 173 12 165 2.80e-12 65.1
Msa1280770 AT1G77950.2 34.286 175 92 6 1 173 12 165 2.80e-12 65.1
Msa1280770 AT1G77950.1 34.286 175 92 6 1 173 12 165 2.80e-12 65.1
Msa1280770 AT1G77950.4 34.286 175 92 6 1 173 12 165 2.80e-12 65.1
Msa1280770 AT2G24840.1 51.852 54 26 0 5 58 77 130 6.50e-12 63.9
Msa1280770 AT4G37435.1 65.854 41 14 0 6 46 17 57 2.08e-11 61.6
Msa1280770 AT3G66656.1 41.892 74 40 1 6 79 17 87 3.57e-11 60.5

Find 54 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAATTGCAGACACAAATTA+TGG 0.257056 8_3:+19599008 Msa1280770:intron
CATGTACCCTATTTGCAAAA+AGG 0.269693 8_3:-19599542 None:intergenic
ACAAATTATGGTTGAACAAT+TGG 0.292155 8_3:+19599020 Msa1280770:CDS
GAACAAGCAACTAAGGATTA+AGG 0.318226 8_3:+19599268 Msa1280770:CDS
CGTGGCAAACTCTATGAATT+TGG 0.319871 8_3:+19595355 Msa1280770:CDS
CTCTATGAATTTGGAAGTGT+TGG 0.323540 8_3:+19595364 Msa1280770:CDS
GTCATTTCAGGCAGTTGCTT+GGG 0.327677 8_3:+19598677 Msa1280770:intron
ATATCCATACTCATATTCAT+AGG 0.359722 8_3:-19599508 None:intergenic
TGGAGCTCTAATTCAGTTGC+TGG 0.365559 8_3:+19599448 Msa1280770:CDS
CAACCCTATGAATATGAGTA+TGG 0.368330 8_3:+19599504 Msa1280770:CDS
TTGGTATCGTTCAATGGTTT+TGG 0.371876 8_3:-19597406 None:intergenic
TCTTGGACCTTTGAACATAA+AGG 0.389505 8_3:+19598705 Msa1280770:CDS
CAGTTGCTTGGGGAAGATCT+TGG 0.428496 8_3:+19598688 Msa1280770:CDS
AGGAGAGGGATTTAATCTTA+AGG 0.448952 8_3:+19599411 Msa1280770:CDS
TTAAGGCAATGGAAAGTTTG+TGG 0.456921 8_3:+19599428 Msa1280770:CDS
TGCAACTCCTTTATGTTCAA+AGG 0.461252 8_3:-19598712 None:intergenic
GAGACTTGAACAAGCAACTA+AGG 0.468260 8_3:+19599261 Msa1280770:CDS
ATGCTCTTGGAAACATTAGA+TGG 0.468413 8_3:-19599836 None:intergenic
TGTCATTTCAGGCAGTTGCT+TGG 0.468734 8_3:+19598676 Msa1280770:intron
GCACCGTTGGTATCGTTCAA+TGG 0.471712 8_3:-19597412 None:intergenic
CCTTCAGCTTAGAAACCTCT+TGG 0.471990 8_3:-19598205 None:intergenic
CCTGTGTGTCACAATCAATT+TGG 0.486260 8_3:-19597461 None:intergenic
CATACTCATATTCATAGGGT+TGG 0.487085 8_3:-19599503 None:intergenic
GGGATTTAATCTTAAGGCAA+TGG 0.487191 8_3:+19599417 Msa1280770:CDS
AATTGGAAGAGCTTCGCAAA+AGG 0.487962 8_3:+19599037 Msa1280770:CDS
ATGGCTCAGCTTGAACATAC+TGG 0.488446 8_3:-19599817 None:intergenic
GAATAGAGAACAAAATAAAC+CGG 0.490867 8_3:+19595233 None:intergenic
AGTCTCACAAGCCATGCTCT+TGG 0.503465 8_3:-19599849 None:intergenic
CACGGCTAGAGAAAATGATA+AGG 0.506200 8_3:-19595336 None:intergenic
TCTATGAATTTGGAAGTGTT+GGG 0.506329 8_3:+19595365 Msa1280770:CDS
ATATTCATAGGGTTGGTTTG+AGG 0.512979 8_3:-19599496 None:intergenic
TTGTGAGACTAACTTCATGC+AGG 0.528929 8_3:+19599862 Msa1280770:CDS
ATTGGAAGAGCTTCGCAAAA+GGG 0.532341 8_3:+19599038 Msa1280770:CDS
ATCTAATGTTTCCAAGAGCA+TGG 0.544048 8_3:+19599838 Msa1280770:CDS
ACGGCTAGAGAAAATGATAA+GGG 0.547854 8_3:-19595335 None:intergenic
AGCACAAGCTAGGCAAAGAA+AGG 0.555280 8_3:+19598765 Msa1280770:CDS
CAAAGTATGAATCTCTTCAA+AGG 0.555360 8_3:+19598228 Msa1280770:CDS
AGAGAACAAAATAAACCGGC+AGG 0.560471 8_3:+19595237 None:intergenic
TATCCATACTCATATTCATA+GGG 0.561894 8_3:-19599507 None:intergenic
GAGGATTAAATGAGCACCGT+TGG 0.567469 8_3:-19597425 None:intergenic
CTTGAACATACTGGTACTGT+TGG 0.571481 8_3:-19599808 None:intergenic
CCAAGAGGTTTCTAAGCTGA+AGG 0.572937 8_3:+19598205 Msa1280770:CDS
TCATTTCAGGCAGTTGCTTG+GGG 0.579920 8_3:+19598678 Msa1280770:intron
AAGGTGCATTAGCACAAGCT+AGG 0.590577 8_3:+19598755 Msa1280770:CDS
GTTGGTTTGAGGTGTCTGAA+AGG 0.598161 8_3:-19599485 None:intergenic
ATTTGGTGGTCATCTTGCTG+AGG 0.603360 8_3:-19597444 None:intergenic
AGACTAACTTCATGCAGGGA+TGG 0.615060 8_3:+19599867 Msa1280770:CDS
CAAGCAGAGTTGGTACCAAG+AGG 0.621451 8_3:+19598190 Msa1280770:intron
CAAATTCATAGAGTTTGCCA+CGG 0.640343 8_3:-19595354 None:intergenic
GTGTGTCACAATCAATTTGG+TGG 0.647829 8_3:-19597458 None:intergenic
TGTGAGACTAACTTCATGCA+GGG 0.652522 8_3:+19599863 Msa1280770:CDS
AATCTCTTCAAAGGACTCAG+AGG 0.660385 8_3:+19598237 Msa1280770:CDS
CCAAATTGATTGTGACACAC+AGG 0.672500 8_3:+19597461 Msa1280770:CDS
AAACCATTGAACGATACCAA+CGG 0.680528 8_3:+19597409 Msa1280770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTTTCAAAAAATTAATAAA+TGG - chr8_3:19595427-19595446 None:intergenic 10.0%
!!! TTTTATTTTGATTTTTTTAG+GGG + chr8_3:19595903-19595922 Msa1280770:intron 10.0%
!!! AATTATTTAAAACATGATTT+TGG - chr8_3:19596323-19596342 None:intergenic 10.0%
!!! AGTTCATAATTTTATTTTAT+AGG + chr8_3:19598120-19598139 Msa1280770:intron 10.0%
!!! ACTTAGTTTTTTTTTTTTTT+AGG + chr8_3:19598302-19598321 Msa1280770:intron 10.0%
!! TAAGAAAAATGTATAAATAA+AGG + chr8_3:19598437-19598456 Msa1280770:intron 10.0%
!! AAGAAAAATGTATAAATAAA+GGG + chr8_3:19598438-19598457 Msa1280770:intron 10.0%
!! TAACTATTAAAAATTGAATT+AGG + chr8_3:19598876-19598895 Msa1280770:intron 10.0%
!!! TTAACTAATAAATTTTTACT+TGG - chr8_3:19599148-19599167 None:intergenic 10.0%
!!! TTTCTTATAGTTTTGTATTT+TGG + chr8_3:19595511-19595530 Msa1280770:intron 15.0%
!!! TTCTTATAGTTTTGTATTTT+GGG + chr8_3:19595512-19595531 Msa1280770:intron 15.0%
!! AGATAAAGAAAAAGAAAAAA+TGG - chr8_3:19595739-19595758 None:intergenic 15.0%
!!! AAAAAATTATTTTGTCATTG+TGG - chr8_3:19595826-19595845 None:intergenic 15.0%
!!! TTTTTATTAATTGTGGTTTT+AGG + chr8_3:19595843-19595862 Msa1280770:intron 15.0%
!!! TTTTATTAATTGTGGTTTTA+GGG + chr8_3:19595844-19595863 Msa1280770:intron 15.0%
!! AAAGATAATGTAATGTTTAA+AGG + chr8_3:19596070-19596089 Msa1280770:intron 15.0%
!! AAAAGATTAAACGTTTAAAA+GGG - chr8_3:19596417-19596436 None:intergenic 15.0%
!!! TTATTAGAGTATTTTTTTAG+TGG - chr8_3:19596460-19596479 None:intergenic 15.0%
!!! TTTTTTTCTTTTCTTTCATT+AGG - chr8_3:19596647-19596666 None:intergenic 15.0%
!!! AATGAAAATTAGTCTTAAAT+TGG - chr8_3:19596780-19596799 None:intergenic 15.0%
!!! ACTAATTTTCATTCAAAAAA+AGG + chr8_3:19596787-19596806 Msa1280770:intron 15.0%
!!! AAAAGAAATATTCTTTTCAT+AGG - chr8_3:19597085-19597104 None:intergenic 15.0%
!! TATGTACATTCTTAATTTAT+AGG + chr8_3:19597248-19597267 Msa1280770:intron 15.0%
!!! GAGAAAAAAAAAATTAGTTT+GGG - chr8_3:19597325-19597344 None:intergenic 15.0%
!! TGAGAAAAAAAAAATTAGTT+TGG - chr8_3:19597326-19597345 None:intergenic 15.0%
!! AAAAAAAACTTGAGAAATTT+GGG - chr8_3:19597841-19597860 None:intergenic 15.0%
!! AAAAAAAAACTTGAGAAATT+TGG - chr8_3:19597842-19597861 None:intergenic 15.0%
!!! TTTTTTTTTTTGTCATCTAA+TGG - chr8_3:19597885-19597904 None:intergenic 15.0%
!!! TTGTACATTATTTTTGTTTT+AGG + chr8_3:19597954-19597973 Msa1280770:intron 15.0%
!!! TGTACATTATTTTTGTTTTA+GGG + chr8_3:19597955-19597974 Msa1280770:intron 15.0%
!!! CAATTTATATAATTCTGTTT+TGG + chr8_3:19598167-19598186 Msa1280770:intron 15.0%
!! AGTTCTATATTTATGTAAAA+GGG - chr8_3:19598285-19598304 None:intergenic 15.0%
!! AAGTTCTATATTTATGTAAA+AGG - chr8_3:19598286-19598305 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG + chr8_3:19598439-19598458 Msa1280770:intron 15.0%
!!! GTCTTTTATATACATATATA+TGG + chr8_3:19598823-19598842 Msa1280770:intron 15.0%
!! TATTAAAATAAAGTTCAATG+TGG + chr8_3:19598928-19598947 Msa1280770:intron 15.0%
!! GATTAAGGTTAAATATATAA+AGG + chr8_3:19599283-19599302 Msa1280770:intron 15.0%
!! AGATAATTAATAGAGAAATT+AGG - chr8_3:19599365-19599384 None:intergenic 15.0%
!!! AAAAAAAATCCAATTAGTTT+TGG + chr8_3:19599724-19599743 Msa1280770:intron 15.0%
!!! AAAAAAATCCAATTAGTTTT+GGG + chr8_3:19599725-19599744 Msa1280770:intron 15.0%
!!! TTTTATTGTCTATTTTTGTG+AGG + chr8_3:19595452-19595471 Msa1280770:intron 20.0%
!! AAATGATTCTATTAACCATT+GGG - chr8_3:19595485-19595504 None:intergenic 20.0%
!! AAAATGATTCTATTAACCAT+TGG - chr8_3:19595486-19595505 None:intergenic 20.0%
!! CATATGTAAATTATGAGTTA+TGG + chr8_3:19595959-19595978 Msa1280770:intron 20.0%
!! TAAACATTACATTATCTTTC+AGG - chr8_3:19596069-19596088 None:intergenic 20.0%
!! AGAAAAAAGAAAAACAGAAA+AGG + chr8_3:19596155-19596174 Msa1280770:intron 20.0%
!! TTAATTCTCACAACAAAATA+TGG + chr8_3:19596368-19596387 Msa1280770:intron 20.0%
!! CAAAAGATTAAACGTTTAAA+AGG - chr8_3:19596418-19596437 None:intergenic 20.0%
!!! CTTTTAAACGTTTAATCTTT+TGG + chr8_3:19596416-19596435 Msa1280770:intron 20.0%
!!! TTACTTTTTAGTTCAATTTG+AGG + chr8_3:19596540-19596559 Msa1280770:intron 20.0%
!! TAGGAAAATTCAAATATTTC+TGG - chr8_3:19597214-19597233 None:intergenic 20.0%
!! ACATAATAAAAGAACAAACT+AGG - chr8_3:19597233-19597252 None:intergenic 20.0%
!!! CTCACTAATACTTTTTTTAA+TGG + chr8_3:19597342-19597361 Msa1280770:intron 20.0%
!! AAGTTATGTGATTGTTAATT+TGG - chr8_3:19597670-19597689 None:intergenic 20.0%
!!! TGTAAAGTATTTTCGTTTTA+GGG - chr8_3:19597783-19597802 None:intergenic 20.0%
!!! TTGTAAAGTATTTTCGTTTT+AGG - chr8_3:19597784-19597803 None:intergenic 20.0%
!! AAATAATACTCATAGTATGT+GGG - chr8_3:19597809-19597828 None:intergenic 20.0%
!! TAAATAATACTCATAGTATG+TGG - chr8_3:19597810-19597829 None:intergenic 20.0%
!!! CAAGTTTTTTTTTTCGTTTT+AGG + chr8_3:19597849-19597868 Msa1280770:intron 20.0%
!! AAAAGCAATAAAATTAGCAA+CGG - chr8_3:19598002-19598021 None:intergenic 20.0%
!!! ATTGCTTTTTCAACTTTTTT+CGG + chr8_3:19598013-19598032 Msa1280770:intron 20.0%
!! GTTCTATATTTATGTAAAAG+GGG - chr8_3:19598284-19598303 None:intergenic 20.0%
!!! TTTTTTTCAATCATTGTTAC+TGG - chr8_3:19598611-19598630 None:intergenic 20.0%
!!! TGAATTCATGAAAATTTGTT+TGG + chr8_3:19599096-19599115 Msa1280770:intron 20.0%
!! AAAAAGCCATATATGTATAA+TGG - chr8_3:19599317-19599336 None:intergenic 20.0%
!! AAATATATGCAAAAAGTTGA+AGG - chr8_3:19599574-19599593 None:intergenic 20.0%
!!! CTAATGTTAACCTATTTTAT+TGG + chr8_3:19599778-19599797 Msa1280770:intron 20.0%
! ACTTTCTCAAAAAGAAGAAA+TGG + chr8_3:19595262-19595281 Msa1280770:CDS 25.0%
!! ACGTTTTCATCAACAAAAAA+AGG - chr8_3:19596027-19596046 None:intergenic 25.0%
! AATAAAGCTGGAAATAAAGA+TGG - chr8_3:19596493-19596512 None:intergenic 25.0%
!!! TTATTTCCAGCTTTATTACA+AGG + chr8_3:19596496-19596515 Msa1280770:intron 25.0%
!!! GTATGATGATTTTGATGATA+AGG + chr8_3:19596702-19596721 Msa1280770:intron 25.0%
! AATAGTGAAGCTGATTAATT+TGG - chr8_3:19596850-19596869 None:intergenic 25.0%
! TTGAAACTCATAACACATTA+TGG + chr8_3:19596912-19596931 Msa1280770:intron 25.0%
! TCGTAGAAAAACATATATCT+AGG + chr8_3:19596971-19596990 Msa1280770:intron 25.0%
!!! TAAGTCAGTATTTTGAGTAA+AGG + chr8_3:19597048-19597067 Msa1280770:intron 25.0%
!!! TTCAAATATTTCTGGATTAG+TGG - chr8_3:19597206-19597225 None:intergenic 25.0%
! TACATGCATGTTTAATACTA+CGG + chr8_3:19597589-19597608 Msa1280770:intron 25.0%
!!! TGGTTTTGTTGAAATTATAG+TGG + chr8_3:19597612-19597631 Msa1280770:intron 25.0%
!! TGATTGTTAATTTGGTAAGA+TGG - chr8_3:19597662-19597681 None:intergenic 25.0%
!!! TTTTTTTTTCGTTTTAGGAG+CGG + chr8_3:19597854-19597873 Msa1280770:intron 25.0%
! AAAAAAAAAACTCGAGAAAG+TGG + chr8_3:19597895-19597914 Msa1280770:intron 25.0%
! AAAAAAAAACTCGAGAAAGT+GGG + chr8_3:19597896-19597915 Msa1280770:intron 25.0%
! AAATAACACTCATAGTATGT+TGG + chr8_3:19597929-19597948 Msa1280770:intron 25.0%
!!! CATTATTTTTGTTTTAGGGT+CGG + chr8_3:19597959-19597978 Msa1280770:intron 25.0%
!! TTGAAATGACTCAGTTATTT+TGG + chr8_3:19598508-19598527 Msa1280770:intron 25.0%
!!! TGAAATGACTCAGTTATTTT+GGG + chr8_3:19598509-19598528 Msa1280770:intron 25.0%
! CATCTACATATATATATGCA+TGG + chr8_3:19598801-19598820 Msa1280770:intron 25.0%
! ACAAATTATGGTTGAACAAT+TGG + chr8_3:19599020-19599039 Msa1280770:CDS 25.0%
!! AACAATTGAAGTGTTTAACT+TGG - chr8_3:19599183-19599202 None:intergenic 25.0%
!! TTCAATTTCAACCATTTTGT+AGG + chr8_3:19599226-19599245 Msa1280770:intron 25.0%
! TCTGTACCATTATACATATA+TGG + chr8_3:19599308-19599327 Msa1280770:intron 25.0%
! TATCCATACTCATATTCATA+GGG - chr8_3:19599510-19599529 None:intergenic 25.0%
! ATATCCATACTCATATTCAT+AGG - chr8_3:19599511-19599530 None:intergenic 25.0%
!!! TTTTGGGTTAGAGTTTTTAA+TGG + chr8_3:19599741-19599760 Msa1280770:intron 25.0%
!! TCTATGAATTTGGAAGTGTT+GGG + chr8_3:19595365-19595384 Msa1280770:CDS 30.0%
TTCTATTAACCATTGGGATT+TGG - chr8_3:19595479-19595498 None:intergenic 30.0%
! GAAACTGATTCAAAGAAGAA+AGG - chr8_3:19595586-19595605 None:intergenic 30.0%
ATCAGTTTCTTTCACCAATA+TGG + chr8_3:19595597-19595616 Msa1280770:intron 30.0%
! AAAAGCATACAATTCAGTTG+TGG - chr8_3:19595652-19595671 None:intergenic 30.0%
TTAACATGTCGATCTATGTT+TGG - chr8_3:19595991-19596010 None:intergenic 30.0%
! TTATCTTTCAGGTGTTGTAA+AGG - chr8_3:19596058-19596077 None:intergenic 30.0%
AGGTTTCAGCTTAGAAATAA+TGG + chr8_3:19596090-19596109 Msa1280770:intron 30.0%
CTGAGAAACAAGAAATATCT+AGG - chr8_3:19596126-19596145 None:intergenic 30.0%
TCATCAAAATCATCATACTG+AGG - chr8_3:19596700-19596719 None:intergenic 30.0%
CTTAAATTGGTCCAAAGAAA+GGG - chr8_3:19596767-19596786 None:intergenic 30.0%
TCTTAAATTGGTCCAAAGAA+AGG - chr8_3:19596768-19596787 None:intergenic 30.0%
AAACTCATAACACATTATGG+TGG + chr8_3:19596915-19596934 Msa1280770:intron 30.0%
TCTACGAAAATTATATGCCA+TGG - chr8_3:19596958-19596977 None:intergenic 30.0%
AAATCCTTGTGGTTGAAATT+TGG + chr8_3:19597015-19597034 Msa1280770:intron 30.0%
AATCCTTGTGGTTGAAATTT+GGG + chr8_3:19597016-19597035 Msa1280770:intron 30.0%
! GGATTAGTGGAATTTATATG+TGG - chr8_3:19597193-19597212 None:intergenic 30.0%
CATGTAACTTCACAAAATCA+CGG - chr8_3:19597575-19597594 None:intergenic 30.0%
! TGTTAATTTGGTAAGATGGT+GGG - chr8_3:19597658-19597677 None:intergenic 30.0%
! TTGTTAATTTGGTAAGATGG+TGG - chr8_3:19597659-19597678 None:intergenic 30.0%
AGGGTTGGAAAAAAAGATTA+CGG - chr8_3:19597764-19597783 None:intergenic 30.0%
!!! AAGTATTTTCGTTTTAGGGT+TGG - chr8_3:19597779-19597798 None:intergenic 30.0%
!!! TTTTTTTTCGTTTTAGGAGC+GGG + chr8_3:19597855-19597874 Msa1280770:intron 30.0%
AAAAAAAACTCGAGAAAGTG+GGG + chr8_3:19597897-19597916 Msa1280770:intron 30.0%
CAAAGTATGAATCTCTTCAA+AGG + chr8_3:19598228-19598247 Msa1280770:CDS 30.0%
ATAAATGTGAAATGAGCCAA+GGG - chr8_3:19598417-19598436 None:intergenic 30.0%
AATAAATGTGAAATGAGCCA+AGG - chr8_3:19598418-19598437 None:intergenic 30.0%
AGTAAATGACTCAGTTAATC+CGG + chr8_3:19598544-19598563 Msa1280770:intron 30.0%
AATCTTGAAAAACAGCTTGA+AGG + chr8_3:19598736-19598755 Msa1280770:CDS 30.0%
! TGTGATCCAATTTAGAACAA+TGG + chr8_3:19598962-19598981 Msa1280770:intron 30.0%
! GATCAACCATTGTTCTAAAT+TGG - chr8_3:19598971-19598990 None:intergenic 30.0%
TCAATTGCAGACACAAATTA+TGG + chr8_3:19599008-19599027 Msa1280770:intron 30.0%
ATGTACCCTATTTGCAAAAA+GGG - chr8_3:19599544-19599563 None:intergenic 30.0%
AACTCTAACCCAAAACTAAT+TGG - chr8_3:19599736-19599755 None:intergenic 30.0%
TGGTATCTGTCCAATAAAAT+AGG - chr8_3:19599791-19599810 None:intergenic 30.0%
!! TTTTTGAGAAAGTTACCTGC+CGG - chr8_3:19595255-19595274 None:intergenic 35.0%
ACGGCTAGAGAAAATGATAA+GGG - chr8_3:19595338-19595357 None:intergenic 35.0%
CAAATTCATAGAGTTTGCCA+CGG - chr8_3:19595357-19595376 None:intergenic 35.0%
! CTCTATGAATTTGGAAGTGT+TGG + chr8_3:19595364-19595383 Msa1280770:CDS 35.0%
TCTTTCACCAATATGGTTAC+TGG + chr8_3:19595604-19595623 Msa1280770:intron 35.0%
CAGAAAACCAGTAACCATAT+TGG - chr8_3:19595614-19595633 None:intergenic 35.0%
TGTACTGTTGTGTAAGATCT+AGG + chr8_3:19596290-19596309 Msa1280770:intron 35.0%
GTACTGTTGTGTAAGATCTA+GGG + chr8_3:19596291-19596310 Msa1280770:intron 35.0%
!! TTTCCAGCTTTATTACAAGG+TGG + chr8_3:19596499-19596518 Msa1280770:intron 35.0%
! AAGGGAAGGAAACTTTTGAA+TGG - chr8_3:19596749-19596768 None:intergenic 35.0%
AAAGTTTCCTTCCCTTTCTT+TGG + chr8_3:19596753-19596772 Msa1280770:intron 35.0%
TCAACCACAAGGATTTCATA+GGG - chr8_3:19597011-19597030 None:intergenic 35.0%
TTCAACCACAAGGATTTCAT+AGG - chr8_3:19597012-19597031 None:intergenic 35.0%
CAAGAGTAAAGAAACACAGT+AGG + chr8_3:19597146-19597165 Msa1280770:intron 35.0%
! TTGGTATCGTTCAATGGTTT+TGG - chr8_3:19597409-19597428 None:intergenic 35.0%
AAACCATTGAACGATACCAA+CGG + chr8_3:19597409-19597428 Msa1280770:CDS 35.0%
ATGCATGTTTAATACTACGG+TGG + chr8_3:19597592-19597611 Msa1280770:intron 35.0%
GTAAATGACTCAGTTAATCC+GGG + chr8_3:19598545-19598564 Msa1280770:intron 35.0%
CCTGAAATGACATCACATAT+TGG - chr8_3:19598668-19598687 None:intergenic 35.0%
! CCAATATGTGATGTCATTTC+AGG + chr8_3:19598665-19598684 Msa1280770:intron 35.0%
TCTTGGACCTTTGAACATAA+AGG + chr8_3:19598705-19598724 Msa1280770:CDS 35.0%
TGCAACTCCTTTATGTTCAA+AGG - chr8_3:19598715-19598734 None:intergenic 35.0%
TAGATGACGTTCCTACAAAA+TGG - chr8_3:19599240-19599259 None:intergenic 35.0%
! ATTTTGTAGGAACGTCATCT+AGG + chr8_3:19599239-19599258 Msa1280770:intron 35.0%
GAACAAGCAACTAAGGATTA+AGG + chr8_3:19599268-19599287 Msa1280770:CDS 35.0%
! AAACTCCATTTTCAGCTTGA+AGG + chr8_3:19599391-19599410 Msa1280770:intron 35.0%
AGGAGAGGGATTTAATCTTA+AGG + chr8_3:19599411-19599430 Msa1280770:CDS 35.0%
GGGATTTAATCTTAAGGCAA+TGG + chr8_3:19599417-19599436 Msa1280770:CDS 35.0%
TTAAGGCAATGGAAAGTTTG+TGG + chr8_3:19599428-19599447 Msa1280770:CDS 35.0%
!! ATATTCATAGGGTTGGTTTG+AGG - chr8_3:19599499-19599518 None:intergenic 35.0%
CATACTCATATTCATAGGGT+TGG - chr8_3:19599506-19599525 None:intergenic 35.0%
CAACCCTATGAATATGAGTA+TGG + chr8_3:19599504-19599523 Msa1280770:CDS 35.0%
! CAGAACCCTTTTTGCAAATA+GGG + chr8_3:19599536-19599555 Msa1280770:CDS 35.0%
CATGTACCCTATTTGCAAAA+AGG - chr8_3:19599545-19599564 None:intergenic 35.0%
ATGCTCTTGGAAACATTAGA+TGG - chr8_3:19599839-19599858 None:intergenic 35.0%
ATCTAATGTTTCCAAGAGCA+TGG + chr8_3:19599838-19599857 Msa1280770:CDS 35.0%
CACGGCTAGAGAAAATGATA+AGG - chr8_3:19595339-19595358 None:intergenic 40.0%
! CTTATCATTTTCTCTAGCCG+TGG + chr8_3:19595337-19595356 Msa1280770:CDS 40.0%
CGTGGCAAACTCTATGAATT+TGG + chr8_3:19595355-19595374 Msa1280770:CDS 40.0%
! TCCTTTTCTGGATCAGTTGA+TGG + chr8_3:19595791-19595810 Msa1280770:intron 40.0%
TCCATCAACTGATCCAGAAA+AGG - chr8_3:19595795-19595814 None:intergenic 40.0%
!! CAGCTTTATTACAAGGTGGA+GGG + chr8_3:19596503-19596522 Msa1280770:intron 40.0%
! AAGGTGGAGGGTTTAGAATT+TGG + chr8_3:19596515-19596534 Msa1280770:intron 40.0%
AATTGGTCCAAAGAAAGGGA+AGG - chr8_3:19596763-19596782 None:intergenic 40.0%
! TTATGGTGGTGTGAATGTGT+TGG + chr8_3:19596929-19596948 Msa1280770:intron 40.0%
GAATCCCTATGAAATCCTTG+TGG + chr8_3:19597004-19597023 Msa1280770:intron 40.0%
TCACCCAAATTTCAACCACA+AGG - chr8_3:19597022-19597041 None:intergenic 40.0%
AAAGAAACACAGTAGGTACC+TGG + chr8_3:19597153-19597172 Msa1280770:intron 40.0%
AAGAAACACAGTAGGTACCT+GGG + chr8_3:19597154-19597173 Msa1280770:intron 40.0%
GTGTGTCACAATCAATTTGG+TGG - chr8_3:19597461-19597480 None:intergenic 40.0%
CCTGTGTGTCACAATCAATT+TGG - chr8_3:19597464-19597483 None:intergenic 40.0%
CCAAATTGATTGTGACACAC+AGG + chr8_3:19597461-19597480 Msa1280770:CDS 40.0%
GTAACTTCACAAAATCACGG+TGG - chr8_3:19597572-19597591 None:intergenic 40.0%
TCTCTCTAGTGCATTGAGAT+TGG - chr8_3:19597715-19597734 None:intergenic 40.0%
AATCTCTTCAAAGGACTCAG+AGG + chr8_3:19598237-19598256 Msa1280770:CDS 40.0%
AGCCAAGGGCTCAATTAATT+CGG - chr8_3:19598403-19598422 None:intergenic 40.0%
AATTGGAAGAGCTTCGCAAA+AGG + chr8_3:19599037-19599056 Msa1280770:CDS 40.0%
ATTGGAAGAGCTTCGCAAAA+GGG + chr8_3:19599038-19599057 Msa1280770:CDS 40.0%
GAGACTTGAACAAGCAACTA+AGG + chr8_3:19599261-19599280 Msa1280770:CDS 40.0%
! CATTTTCAGCTTGAAGGAGA+GGG + chr8_3:19599397-19599416 Msa1280770:intron 40.0%
TTTGCAAAAAGGGTTCTGCT+TGG - chr8_3:19599534-19599553 None:intergenic 40.0%
! GCAGAACCCTTTTTGCAAAT+AGG + chr8_3:19599535-19599554 Msa1280770:CDS 40.0%
CTTGAACATACTGGTACTGT+TGG - chr8_3:19599811-19599830 None:intergenic 40.0%
TTGTGAGACTAACTTCATGC+AGG + chr8_3:19599862-19599881 Msa1280770:CDS 40.0%
TGTGAGACTAACTTCATGCA+GGG + chr8_3:19599863-19599882 Msa1280770:CDS 40.0%
TTGTGAGGTCCAAATCCCAA+TGG + chr8_3:19595467-19595486 Msa1280770:intron 45.0%
CCAGAAAAGGAGAGAGATGA+GGG - chr8_3:19595782-19595801 None:intergenic 45.0%
TCCAGAAAAGGAGAGAGATG+AGG - chr8_3:19595783-19595802 None:intergenic 45.0%
CCTCCACCTTGTAATAAAGC+TGG - chr8_3:19596505-19596524 None:intergenic 45.0%
!! CCAGCTTTATTACAAGGTGG+AGG + chr8_3:19596502-19596521 Msa1280770:intron 45.0%
!! TGTGAATGTGTTGGCTTCCA+TGG + chr8_3:19596938-19596957 Msa1280770:intron 45.0%
GTGGACAAAATTACACACCC+AGG - chr8_3:19597174-19597193 None:intergenic 45.0%
! GAGGATTAAATGAGCACCGT+TGG - chr8_3:19597428-19597447 None:intergenic 45.0%
! ATTTGGTGGTCATCTTGCTG+AGG - chr8_3:19597447-19597466 None:intergenic 45.0%
!!! TCTGTTTTGGCAAGCAGAGT+TGG + chr8_3:19598180-19598199 Msa1280770:intron 45.0%
CCTTCAGCTTAGAAACCTCT+TGG - chr8_3:19598208-19598227 None:intergenic 45.0%
CCAAGAGGTTTCTAAGCTGA+AGG + chr8_3:19598205-19598224 Msa1280770:CDS 45.0%
CTCAATTAATTCGGGACGGA+GGG - chr8_3:19598394-19598413 None:intergenic 45.0%
AGGGCTCAATTAATTCGGGA+CGG - chr8_3:19598398-19598417 None:intergenic 45.0%
TCCCGAATTAATTGAGCCCT+TGG + chr8_3:19598398-19598417 Msa1280770:intron 45.0%
GCCAAGGGCTCAATTAATTC+GGG - chr8_3:19598402-19598421 None:intergenic 45.0%
ATGACTCAGTTAATCCGGGA+CGG + chr8_3:19598549-19598568 Msa1280770:intron 45.0%
! TGTCATTTCAGGCAGTTGCT+TGG + chr8_3:19598676-19598695 Msa1280770:intron 45.0%
GTCATTTCAGGCAGTTGCTT+GGG + chr8_3:19598677-19598696 Msa1280770:intron 45.0%
TCATTTCAGGCAGTTGCTTG+GGG + chr8_3:19598678-19598697 Msa1280770:intron 45.0%
AAGGTGCATTAGCACAAGCT+AGG + chr8_3:19598755-19598774 Msa1280770:CDS 45.0%
AGCACAAGCTAGGCAAAGAA+AGG + chr8_3:19598765-19598784 Msa1280770:CDS 45.0%
CCTCTCCTTCAAGCTGAAAA+TGG - chr8_3:19599399-19599418 None:intergenic 45.0%
! CCATTTTCAGCTTGAAGGAG+AGG + chr8_3:19599396-19599415 Msa1280770:intron 45.0%
! TGGAGCTCTAATTCAGTTGC+TGG + chr8_3:19599448-19599467 Msa1280770:CDS 45.0%
!! GTTGGTTTGAGGTGTCTGAA+AGG - chr8_3:19599488-19599507 None:intergenic 45.0%
ATGGCTCAGCTTGAACATAC+TGG - chr8_3:19599820-19599839 None:intergenic 45.0%
AGACTAACTTCATGCAGGGA+TGG + chr8_3:19599867-19599886 Msa1280770:CDS 45.0%
!!! ATAATTTTTTTTATTAATTG+TGG + chr8_3:19595836-19595855 Msa1280770:intron 5.0%
!!! TTTTTTATTTTGATTTTTTT+AGG + chr8_3:19595901-19595920 Msa1280770:intron 5.0%
!!! TTTTTATTTTGATTTTTTTA+GGG + chr8_3:19595902-19595921 Msa1280770:intron 5.0%
!! AATAATTAAAATAAAATCAT+AGG - chr8_3:19599123-19599142 None:intergenic 5.0%
! CCCTCATCTCTCTCCTTTTC+TGG + chr8_3:19595779-19595798 Msa1280770:intron 50.0%
GCACCGTTGGTATCGTTCAA+TGG - chr8_3:19597415-19597434 None:intergenic 50.0%
!! CAAGCAGAGTTGGTACCAAG+AGG + chr8_3:19598190-19598209 Msa1280770:intron 50.0%
GCTCAATTAATTCGGGACGG+AGG - chr8_3:19598395-19598414 None:intergenic 50.0%
AACATATACTCCCTCCGTCC+CGG - chr8_3:19598566-19598585 None:intergenic 50.0%
CAGTTGCTTGGGGAAGATCT+TGG + chr8_3:19598688-19598707 Msa1280770:CDS 50.0%
AGTCTCACAAGCCATGCTCT+TGG - chr8_3:19599852-19599871 None:intergenic 50.0%
ACTCAGTTAATCCGGGACGG+AGG + chr8_3:19598552-19598571 Msa1280770:intron 55.0%
CTCAGTTAATCCGGGACGGA+GGG + chr8_3:19598553-19598572 Msa1280770:intron 55.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 19595238 19599895 19595238 ID=Msa1280770;Name=Msa1280770
chr8_3 mRNA 19595238 19599895 19595238 ID=Msa1280770-mRNA-1;Parent=Msa1280770;Name=Msa1280770-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|1|0.75|1|1|0.75|8|0|240
chr8_3 exon 19595238 19595386 19595238 ID=Msa1280770-mRNA-1:exon:7273;Parent=Msa1280770-mRNA-1
chr8_3 exon 19597401 19597482 19597401 ID=Msa1280770-mRNA-1:exon:7274;Parent=Msa1280770-mRNA-1
chr8_3 exon 19598197 19598258 19598197 ID=Msa1280770-mRNA-1:exon:7275;Parent=Msa1280770-mRNA-1
chr8_3 exon 19598687 19598786 19598687 ID=Msa1280770-mRNA-1:exon:7276;Parent=Msa1280770-mRNA-1
chr8_3 exon 19599018 19599059 19599018 ID=Msa1280770-mRNA-1:exon:7277;Parent=Msa1280770-mRNA-1
chr8_3 exon 19599248 19599289 19599248 ID=Msa1280770-mRNA-1:exon:7278;Parent=Msa1280770-mRNA-1
chr8_3 exon 19599406 19599557 19599406 ID=Msa1280770-mRNA-1:exon:7279;Parent=Msa1280770-mRNA-1
chr8_3 exon 19599805 19599895 19599805 ID=Msa1280770-mRNA-1:exon:7280;Parent=Msa1280770-mRNA-1
chr8_3 CDS 19595238 19595386 19595238 ID=Msa1280770-mRNA-1:cds;Parent=Msa1280770-mRNA-1
chr8_3 CDS 19597401 19597482 19597401 ID=Msa1280770-mRNA-1:cds;Parent=Msa1280770-mRNA-1
chr8_3 CDS 19598197 19598258 19598197 ID=Msa1280770-mRNA-1:cds;Parent=Msa1280770-mRNA-1
chr8_3 CDS 19598687 19598786 19598687 ID=Msa1280770-mRNA-1:cds;Parent=Msa1280770-mRNA-1
chr8_3 CDS 19599018 19599059 19599018 ID=Msa1280770-mRNA-1:cds;Parent=Msa1280770-mRNA-1
chr8_3 CDS 19599248 19599289 19599248 ID=Msa1280770-mRNA-1:cds;Parent=Msa1280770-mRNA-1
chr8_3 CDS 19599406 19599557 19599406 ID=Msa1280770-mRNA-1:cds;Parent=Msa1280770-mRNA-1
chr8_3 CDS 19599805 19599895 19599805 ID=Msa1280770-mRNA-1:cds;Parent=Msa1280770-mRNA-1
Gene Sequence

>Msa1280770

GAGAACAAAATAAACCGGCAGGTAACTTTCTCAAAAAGAAGAAATGGTTTGCTCAAGAAAGCTTATGAACTGTCTGTTCTCTGTGATGCTGAAGTTGCCCTTATCATTTTCTCTAGCCGTGGCAAACTCTATGAATTTGGAAGTGTTGGAACTACCAAAACCATTGAACGATACCAACGGTGCTCATTTAATCCTCAGCAAGATGACCACCAAATTGATTGTGACACACAGAGTTGGTACCAAGAGGTTTCTAAGCTGAAGGCAAAGTATGAATCTCTTCAAAGGACTCAGAGGCAGTTGCTTGGGGAAGATCTTGGACCTTTGAACATAAAGGAGTTGCAGAATCTTGAAAAACAGCTTGAAGGTGCATTAGCACAAGCTAGGCAAAGAAAGACACAAATTATGGTTGAACAATTGGAAGAGCTTCGCAAAAGGGAACGTCATCTAGGAGACTTGAACAAGCAACTAAGGATTAAGCTTGAAGGAGAGGGATTTAATCTTAAGGCAATGGAAAGTTTGTGGAGCTCTAATTCAGTTGCTGGAAATAGCAACTTTACCTTTCAGACACCTCAAACCAACCCTATGAATATGAGTATGGATATCCAAGCAGAACCCTTTTTGCAAATAGGATACCAACAGTACCAGTATGTTCAAGCTGAGCCATCTAATGTTTCCAAGAGCATGGCTTGTGAGACTAACTTCATGCAGGGATGGATGCTT
Protein sequence

>Msa1280770

ENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVGTTKTIERYQRCSFNPQQDDHQIDCDTQSWYQEVSKLKAKYESLQRTQRQLLGEDLGPLNIKELQNLEKQLEGALAQARQRKTQIMVEQLEELRKRERHLGDLNKQLRIKLEGEGFNLKAMESLWSSNSVAGNSNFTFQTPQTNPMNMSMDIQAEPFLQIGYQQYQYVQAEPSNVSKSMACETNFMQGWML