AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1281000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1281000 MtrunA17_Chr8g0351491 97.656 128 3 0 1 128 151 278 1.67e-92 268
Msa1281000 MtrunA17_Chr8g0353621 85.039 127 19 0 1 127 145 271 2.65e-78 232
Msa1281000 MtrunA17_Chr3g0125381 86.047 129 15 1 1 126 87 215 3.91e-78 229
Msa1281000 MtrunA17_Chr3g0140631 64.286 126 45 0 1 126 172 297 8.08e-59 183
Msa1281000 MtrunA17_Chr7g0274941 39.837 123 68 3 1 117 152 274 5.56e-24 93.6
Msa1281000 MtrunA17_Chr5g0444171 36.290 124 74 3 3 122 233 355 7.56e-22 89.7
Msa1281000 MtrunA17_Chr3g0080101 41.509 106 58 1 17 118 647 752 1.14e-21 89.4
Msa1281000 MtrunA17_Chr4g0074811 36.585 123 73 3 3 121 232 353 2.12e-21 88.2
Msa1281000 MtrunA17_Chr2g0321101 44.545 110 59 1 17 126 320 427 3.03e-21 87.8
Msa1281000 MtrunA17_Chr7g0266031 41.509 106 58 1 17 118 722 827 3.51e-21 87.8
Msa1281000 MtrunA17_Chr1g0179101 39.623 106 60 1 17 118 700 805 4.97e-21 87.4
Msa1281000 MtrunA17_Chr8g0385281 37.302 126 72 3 2 120 139 264 8.50e-21 85.9
Msa1281000 MtrunA17_Chr4g0030361 38.053 113 66 1 10 118 482 594 1.28e-20 86.3
Msa1281000 MtrunA17_Chr4g0045371 38.889 126 70 3 2 120 157 282 1.96e-20 84.7
Msa1281000 MtrunA17_Chr6g0453671 37.903 124 72 3 3 123 156 277 2.63e-20 84.7
Msa1281000 MtrunA17_Chr3g0131061 34.921 126 75 3 2 120 138 263 3.60e-20 84.0
Msa1281000 MtrunA17_Chr2g0277501 34.921 126 75 3 2 120 138 263 4.92e-20 83.6
Msa1281000 MtrunA17_Chr3g0098951 35.246 122 72 4 3 119 225 344 5.33e-20 84.3
Msa1281000 MtrunA17_Chr1g0157131 36.585 123 73 3 3 121 215 336 5.81e-20 84.3
Msa1281000 MtrunA17_Chr5g0399911 34.921 126 75 3 2 120 153 278 6.78e-20 83.2
Msa1281000 MtrunA17_Chr2g0327561 40.708 113 63 2 10 118 812 924 6.88e-20 84.3
Msa1281000 MtrunA17_Chr8g0338741 41.121 107 58 2 13 118 242 344 6.92e-20 84.0
Msa1281000 MtrunA17_Chr5g0441691 36.585 123 73 3 3 121 209 330 9.08e-20 83.6
Msa1281000 MtrunA17_Chr1g0176751 38.655 119 68 3 3 117 265 382 1.07e-19 83.6
Msa1281000 MtrunA17_Chr1g0203881 32.787 122 77 3 3 120 182 302 1.15e-19 83.6
Msa1281000 MtrunA17_Chr2g0309421 38.835 103 59 1 20 118 408 510 1.16e-19 83.6
Msa1281000 MtrunA17_Chr4g0001331 38.525 122 67 3 3 118 156 275 1.43e-19 83.2
Msa1281000 MtrunA17_Chr1g0190131 35.294 119 73 2 3 117 146 264 1.44e-19 81.6
Msa1281000 MtrunA17_Chr4g0008561 34.454 119 74 3 3 117 158 276 1.72e-19 82.8
Msa1281000 MtrunA17_Chr6g0453681 39.669 121 64 4 3 118 156 272 1.88e-19 82.8
Msa1281000 MtrunA17_Chr2g0284011 36.000 125 72 3 1 119 146 268 2.07e-19 82.4
Msa1281000 MtrunA17_Chr4g0055451 35.714 126 74 3 2 120 139 264 2.09e-19 81.6
Msa1281000 MtrunA17_Chr0c02g0489761 36.585 123 73 3 3 121 219 340 2.11e-19 82.8
Msa1281000 MtrunA17_Chr6g0468751 40.336 119 62 4 3 116 156 270 2.81e-19 82.4
Msa1281000 MtrunA17_Chr2g0304111 34.921 126 74 3 1 120 158 281 3.40e-19 82.0
Msa1281000 MtrunA17_Chr8g0381821 35.714 126 74 3 2 120 138 263 4.08e-19 80.9
Msa1281000 MtrunA17_Chr8g0369091 37.273 110 65 1 13 118 778 887 4.25e-19 82.0
Msa1281000 MtrunA17_Chr7g0227331 37.736 106 62 1 17 118 468 573 4.84e-19 81.6
Msa1281000 MtrunA17_Chr1g0162301 37.302 126 72 3 2 120 158 283 5.18e-19 80.9
Msa1281000 MtrunA17_Chr1g0150321 33.588 131 74 4 3 127 149 272 6.22e-19 81.3
Msa1281000 MtrunA17_Chr1g0170281 35.000 120 73 3 3 118 259 377 7.41e-19 81.3
Msa1281000 MtrunA17_Chr8g0356291 38.679 106 61 1 17 118 357 462 7.73e-19 80.9
Msa1281000 MtrunA17_Chr3g0132591 35.345 116 70 3 6 117 246 360 8.21e-19 80.9
Msa1281000 MtrunA17_Chr6g0449401 38.095 105 61 1 17 117 529 633 1.78e-18 80.1
Msa1281000 MtrunA17_Chr4g0059751 33.600 125 74 3 1 118 231 353 1.83e-18 79.7
Msa1281000 MtrunA17_Chr1g0176421 33.333 120 75 3 3 118 302 420 2.06e-18 79.7
Msa1281000 MtrunA17_Chr1g0200601 34.400 125 77 3 1 121 169 292 2.23e-18 79.7
Msa1281000 MtrunA17_Chr2g0290691 38.835 103 59 1 20 118 443 545 2.74e-18 79.3
Msa1281000 MtrunA17_Chr3g0127571 32.258 124 79 3 3 122 283 405 2.78e-18 79.3
Msa1281000 MtrunA17_Chr3g0132671 35.294 119 72 3 3 118 186 302 2.96e-18 79.3
Msa1281000 MtrunA17_Chr8g0335351 34.862 109 67 1 14 118 597 705 3.84e-18 79.0
Msa1281000 MtrunA17_Chr7g0257751 36.134 119 71 3 3 117 199 316 4.34e-18 79.0
Msa1281000 MtrunA17_Chr6g0478601 36.111 108 65 2 16 119 295 402 4.71e-18 79.0
Msa1281000 MtrunA17_Chr8g0374701 34.167 120 74 3 3 118 273 391 5.68e-18 78.6
Msa1281000 MtrunA17_Chr2g0329011 38.261 115 62 3 9 118 206 316 6.10e-18 78.2
Msa1281000 MtrunA17_Chr5g0426521 36.508 126 73 3 2 120 138 263 8.26e-18 77.4
Msa1281000 MtrunA17_Chr1g0173541 37.500 120 70 4 3 118 193 311 9.60e-18 77.8
Msa1281000 MtrunA17_Chr7g0234641 35.514 107 62 2 14 118 234 335 1.17e-17 77.4
Msa1281000 MtrunA17_Chr4g0059951 34.375 128 79 4 3 126 214 340 1.27e-17 77.4
Msa1281000 MtrunA17_Chr8g0380661 34.400 125 75 3 3 120 136 260 1.34e-17 76.6
Msa1281000 MtrunA17_Chr8g0387671 33.871 124 77 3 3 122 207 329 1.35e-17 77.4
Msa1281000 MtrunA17_Chr5g0441011 32.540 126 77 3 1 120 148 271 1.76e-17 77.0
Msa1281000 MtrunA17_Chr7g0267771 31.667 120 77 3 3 118 229 347 1.82e-17 77.0
Msa1281000 MtrunA17_Chr5g0402551 35.000 120 73 3 3 118 279 397 1.88e-17 77.0
Msa1281000 MtrunA17_Chr3g0123791 36.885 122 70 3 2 116 139 260 2.09e-17 76.3
Msa1281000 MtrunA17_Chr7g0250631 33.028 109 69 1 14 118 590 698 2.80e-17 76.6
Msa1281000 MtrunA17_Chr4g0045261 34.167 120 74 3 3 118 282 400 3.36e-17 76.3
Msa1281000 MtrunA17_Chr7g0276111 30.894 123 80 3 3 121 289 410 3.46e-17 76.3
Msa1281000 MtrunA17_Chr7g0245031 33.600 125 74 3 1 118 283 405 4.02e-17 76.3
Msa1281000 MtrunA17_Chr8g0374571 33.333 126 77 3 2 120 157 282 4.26e-17 75.9
Msa1281000 MtrunA17_Chr5g0397101 35.772 123 74 3 3 121 208 329 5.53e-17 75.9
Msa1281000 MtrunA17_Chr4g0063311 42.857 98 47 2 17 106 329 425 5.77e-17 75.9
Msa1281000 MtrunA17_Chr3g0135951 40.000 115 61 4 10 118 290 402 6.07e-17 75.5
Msa1281000 MtrunA17_Chr7g0242561 33.333 120 75 3 3 118 197 315 7.23e-17 75.5
Msa1281000 MtrunA17_Chr7g0256001 33.613 119 74 3 3 117 286 403 8.61e-17 75.1
Msa1281000 MtrunA17_Chr4g0063881 35.484 124 74 3 1 120 146 267 1.05e-16 74.7
Msa1281000 MtrunA17_Chr5g0444191 33.333 111 68 3 16 124 64 170 1.28e-16 72.4
Msa1281000 MtrunA17_Chr4g0013131 32.800 125 76 3 1 119 146 268 1.34e-16 74.7
Msa1281000 MtrunA17_Chr4g0055431 32.540 126 78 3 2 120 145 270 1.39e-16 73.9
Msa1281000 MtrunA17_Chr4g0018201 32.743 113 72 2 11 119 937 1049 1.46e-16 74.7
Msa1281000 MtrunA17_Chr5g0428981 31.858 113 73 2 11 119 941 1053 1.64e-16 74.3
Msa1281000 MtrunA17_Chr5g0448721 35.772 123 74 3 3 121 237 358 1.70e-16 74.3
Msa1281000 MtrunA17_Chr2g0333821 36.066 122 70 3 3 118 150 269 1.77e-16 74.3
Msa1281000 MtrunA17_Chr5g0405421 31.250 128 83 3 3 126 242 368 2.06e-16 74.3
Msa1281000 MtrunA17_Chr4g0032761 37.069 116 68 2 11 126 244 354 2.29e-16 73.9
Msa1281000 MtrunA17_Chr8g0385341 33.871 124 77 3 1 120 169 291 3.47e-16 73.6
Msa1281000 MtrunA17_Chr2g0312641 36.800 125 62 5 5 117 284 403 3.63e-16 73.6
Msa1281000 MtrunA17_Chr1g0153321 39.423 104 57 3 20 118 307 409 5.26e-16 72.8
Msa1281000 MtrunA17_Chr7g0244521 32.836 134 78 4 3 128 148 277 6.48e-16 72.8
Msa1281000 MtrunA17_Chr2g0285711 35.238 105 61 2 20 117 304 408 9.50e-16 72.0
Msa1281000 MtrunA17_Chr3g0131181 33.607 122 76 3 3 120 170 290 1.19e-15 72.0
Msa1281000 MtrunA17_Chr7g0272841 32.258 124 77 3 1 117 208 331 1.19e-15 72.0
Msa1281000 MtrunA17_Chr4g0033371 34.167 120 74 3 3 118 213 331 1.22e-15 72.0
Msa1281000 MtrunA17_Chr7g0267751 31.667 120 77 3 3 118 276 394 1.34e-15 72.0
Msa1281000 MtrunA17_Chr6g0486661 36.585 123 70 4 1 117 895 1015 1.35e-15 72.0
Msa1281000 MtrunA17_Chr4g0069301 32.308 130 80 3 1 124 161 288 1.36e-15 71.6
Msa1281000 MtrunA17_Chr1g0170551 32.787 122 75 3 3 120 142 260 1.82e-15 71.6
Msa1281000 MtrunA17_Chr5g0428031 32.258 124 78 3 1 120 144 265 1.96e-15 71.2
Msa1281000 MtrunA17_Chr8g0345801 36.905 84 50 2 3 83 154 237 2.24e-15 70.1
Msa1281000 MtrunA17_Chr3g0107011 36.508 126 68 5 1 118 148 269 2.49e-15 70.9
Msa1281000 MtrunA17_Chr3g0129721 33.058 121 76 3 3 118 164 284 2.78e-15 70.1
Msa1281000 MtrunA17_Chr5g0402661 32.800 125 77 3 3 120 153 277 2.90e-15 70.5
Msa1281000 MtrunA17_Chr8g0355131 36.066 122 70 3 3 118 188 307 3.11e-15 70.9
Msa1281000 MtrunA17_Chr1g0205421 36.000 125 72 4 1 119 146 268 3.70e-15 70.5
Msa1281000 MtrunA17_Chr5g0432471 31.746 126 78 3 3 122 148 271 4.27e-15 70.5
Msa1281000 MtrunA17_Chr4g0074791 30.894 123 80 3 3 121 237 358 4.73e-15 70.1
Msa1281000 MtrunA17_Chr8g0381091 36.449 107 59 3 20 118 302 407 7.77e-15 69.7
Msa1281000 MtrunA17_Chr8g0346071 30.081 123 80 3 1 119 152 272 1.16e-14 68.9
Msa1281000 MtrunA17_Chr2g0302431 32.031 128 79 3 1 122 155 280 1.54e-14 68.6
Msa1281000 MtrunA17_Chr7g0244561 33.333 120 72 3 3 116 154 271 2.80e-14 67.8
Msa1281000 MtrunA17_Chr8g0384301 34.400 125 77 4 1 121 436 559 4.38e-14 67.4
Msa1281000 MtrunA17_Chr4g0052981 30.159 126 84 3 1 122 140 265 6.93e-14 66.6
Msa1281000 MtrunA17_Chr4g0052961 30.159 126 84 3 1 122 177 302 7.86e-14 66.6
Msa1281000 MtrunA17_Chr1g0187581 37.500 104 59 3 20 118 315 417 3.08e-13 65.1
Msa1281000 MtrunA17_Chr8g0375141 29.365 126 85 3 1 122 179 304 4.38e-13 64.3
Msa1281000 MtrunA17_Chr2g0299781 32.456 114 73 2 10 119 309 422 1.24e-12 63.2
Msa1281000 MtrunA17_Chr6g0487231 28.682 129 82 4 1 119 203 331 1.77e-12 62.8
Msa1281000 MtrunA17_Chr1g0167311 36.893 103 60 3 20 118 314 415 2.09e-12 62.8
Msa1281000 MtrunA17_Chr1g0183651 40.449 89 47 2 16 98 309 397 2.64e-12 62.4
Msa1281000 MtrunA17_Chr6g0450571 32.824 131 72 4 1 118 151 278 3.72e-12 62.0
Msa1281000 MtrunA17_Chr8g0346081 28.455 123 82 3 1 119 152 272 3.86e-12 62.0
Msa1281000 MtrunA17_Chr1g0167351 35.577 104 61 3 20 118 309 411 5.12e-12 61.6
Msa1281000 MtrunA17_Chr3g0107051 27.778 126 83 3 1 120 155 278 5.55e-12 61.2
Msa1281000 MtrunA17_Chr1g0188991 30.303 132 76 4 1 119 150 278 6.83e-12 61.2
Msa1281000 MtrunA17_Chr7g0261491 38.202 89 49 2 16 98 309 397 1.89e-11 60.1
Msa1281000 MtrunA17_Chr2g0317001 30.645 124 77 4 1 118 148 268 3.01e-11 59.3
Msa1281000 MtrunA17_Chr3g0114511 30.400 125 79 4 1 119 164 286 4.50e-11 58.9
Msa1281000 MtrunA17_Chr4g0051191 32.520 123 75 5 1 118 299 418 6.59e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1281000 AT2G45490.1 80.315 127 25 0 1 127 157 283 2.65e-73 220
Msa1281000 AT2G25880.2 63.492 126 46 0 1 126 128 253 5.95e-59 182
Msa1281000 AT2G25880.1 63.492 126 46 0 1 126 160 285 1.42e-58 182
Msa1281000 AT4G32830.1 63.492 126 46 0 1 126 166 291 2.04e-58 182
Msa1281000 AT2G25880.4 63.492 126 46 0 1 126 173 298 2.18e-58 182
Msa1281000 AT2G25880.3 63.492 126 46 0 1 126 221 346 1.22e-57 182
Msa1281000 AT2G45490.2 82.653 98 17 0 1 98 157 254 1.10e-56 177
Msa1281000 AT1G79250.1 41.509 106 58 1 17 118 376 481 1.52e-22 92.0
Msa1281000 AT1G79250.3 41.509 106 58 1 17 118 376 481 1.52e-22 92.0
Msa1281000 AT1G79250.2 41.509 106 58 1 17 118 376 481 1.52e-22 92.0
Msa1281000 AT1G79250.4 41.509 106 58 1 17 118 376 481 1.52e-22 92.0
Msa1281000 AT5G10930.1 39.683 126 68 3 1 120 147 270 2.18e-22 91.3
Msa1281000 AT2G36350.1 43.396 106 56 1 17 118 794 899 4.71e-22 90.9
Msa1281000 AT3G04530.1 36.000 125 77 2 1 122 150 274 6.54e-22 88.2
Msa1281000 AT2G20050.1 41.935 124 63 4 1 117 917 1038 7.44e-22 90.1
Msa1281000 AT2G20050.2 41.935 124 63 4 1 117 914 1035 7.81e-22 90.1
Msa1281000 AT3G12690.1 40.777 103 57 1 20 118 408 510 1.87e-21 89.0
Msa1281000 AT3G12690.3 40.777 103 57 1 20 118 408 510 1.87e-21 89.0
Msa1281000 AT3G12690.2 40.777 103 57 1 20 118 408 510 1.87e-21 89.0
Msa1281000 AT5G08590.2 37.600 125 71 3 3 120 63 187 4.32e-21 85.9
Msa1281000 AT3G25250.1 39.450 109 61 2 11 118 226 330 5.89e-21 87.0
Msa1281000 AT1G50700.3 34.959 123 75 3 3 121 214 335 6.80e-21 87.0
Msa1281000 AT5G25110.1 39.062 128 70 3 1 122 177 302 7.24e-21 87.0
Msa1281000 AT1G50700.1 34.959 123 75 3 3 121 214 335 9.45e-21 87.0
Msa1281000 AT1G50700.2 34.959 123 75 3 3 121 214 335 1.12e-20 86.7
Msa1281000 AT5G08590.1 37.600 125 71 3 3 120 139 263 1.15e-20 85.9
Msa1281000 AT4G21940.3 36.667 120 71 3 3 118 243 361 1.17e-20 86.7
Msa1281000 AT4G33950.2 39.683 126 69 3 2 120 155 280 1.23e-20 85.5
Msa1281000 AT4G21940.1 36.667 120 71 3 3 118 243 361 1.33e-20 86.7
Msa1281000 AT4G21940.2 36.667 120 71 3 3 118 243 361 1.44e-20 86.3
Msa1281000 AT4G33950.1 39.683 126 69 3 2 120 155 280 1.57e-20 85.5
Msa1281000 AT4G04720.2 35.000 120 73 3 3 118 221 339 1.71e-20 86.3
Msa1281000 AT4G04720.1 35.000 120 73 3 3 118 221 339 1.71e-20 86.3
Msa1281000 AT1G60940.1 38.095 126 71 3 2 120 138 263 2.20e-20 85.1
Msa1281000 AT1G60940.2 38.095 126 71 3 2 120 138 263 2.20e-20 85.1
Msa1281000 AT3G20410.2 34.959 123 75 3 3 121 232 353 2.65e-20 85.5
Msa1281000 AT3G20410.1 34.959 123 75 3 3 121 232 353 2.65e-20 85.5
Msa1281000 AT5G03640.2 43.617 94 53 0 17 110 774 867 2.73e-20 85.9
Msa1281000 AT5G03640.1 43.617 94 53 0 17 110 774 867 2.73e-20 85.9
Msa1281000 AT1G16440.1 39.623 106 60 1 17 118 332 437 3.08e-20 85.5
Msa1281000 AT4G04740.2 35.000 120 73 3 3 118 210 328 3.14e-20 85.5
Msa1281000 AT4G04740.4 35.000 120 73 3 3 118 210 328 3.52e-20 85.1
Msa1281000 AT4G04740.6 35.000 120 73 3 3 118 210 328 3.52e-20 85.1
Msa1281000 AT4G04740.5 35.000 120 73 3 3 118 210 328 3.52e-20 85.1
Msa1281000 AT4G04740.3 35.000 120 73 3 3 118 210 328 3.52e-20 85.1
Msa1281000 AT4G04740.1 35.000 120 73 3 3 118 210 328 3.52e-20 85.1
Msa1281000 AT4G04740.7 35.000 120 73 3 3 118 210 328 3.52e-20 85.1
Msa1281000 AT3G52890.2 40.566 106 59 1 17 118 775 880 3.56e-20 85.5
Msa1281000 AT3G52890.4 40.566 106 59 1 17 118 775 880 3.56e-20 85.5
Msa1281000 AT3G52890.1 40.566 106 59 1 17 118 775 880 3.56e-20 85.5
Msa1281000 AT3G52890.3 40.566 106 59 1 17 118 775 880 3.56e-20 85.5
Msa1281000 AT1G10940.1 36.508 126 73 3 2 120 138 263 3.78e-20 84.3
Msa1281000 AT1G10940.2 36.508 126 73 3 2 120 146 271 4.09e-20 84.3
Msa1281000 AT3G44610.1 40.566 106 59 1 17 118 309 414 6.63e-20 84.3
Msa1281000 AT2G41860.1 35.938 128 77 3 3 126 195 321 9.42e-20 84.0
Msa1281000 AT5G12180.1 37.398 123 72 3 3 121 214 335 9.87e-20 84.0
Msa1281000 AT1G61950.1 34.921 126 77 3 3 124 240 364 1.23e-19 83.6
Msa1281000 AT2G41860.2 35.938 128 77 3 3 126 195 321 1.53e-19 83.6
Msa1281000 AT1G76040.3 33.607 122 76 3 3 120 253 373 1.54e-19 83.6
Msa1281000 AT1G76040.2 33.884 121 75 3 3 119 253 372 1.54e-19 83.6
Msa1281000 AT1G48490.4 36.364 110 66 2 14 119 1005 1114 1.71e-19 83.6
Msa1281000 AT1G48490.3 36.364 110 66 2 14 119 1004 1113 1.78e-19 83.6
Msa1281000 AT1G48490.2 36.364 110 66 2 14 119 1004 1113 1.78e-19 83.6
Msa1281000 AT1G48490.1 36.364 110 66 2 14 119 1004 1113 1.78e-19 83.6
Msa1281000 AT1G08650.1 35.000 120 74 2 3 118 155 274 1.82e-19 81.6
Msa1281000 AT5G63650.1 36.000 125 73 3 3 120 139 263 2.00e-19 82.4
Msa1281000 AT5G19360.1 37.398 123 72 3 3 121 209 330 2.34e-19 82.8
Msa1281000 AT1G12680.1 33.058 121 76 3 1 117 236 355 2.85e-19 82.4
Msa1281000 AT3G45780.2 40.206 97 58 0 10 106 841 937 3.81e-19 82.4
Msa1281000 AT3G45780.1 40.206 97 58 0 10 106 841 937 3.81e-19 82.4
Msa1281000 AT4G13000.1 37.736 106 61 2 14 118 222 323 4.17e-19 81.6
Msa1281000 AT3G01090.3 38.843 121 65 4 3 118 156 272 6.63e-19 81.6
Msa1281000 AT3G01090.1 38.843 121 65 4 3 118 156 272 6.63e-19 81.6
Msa1281000 AT3G51850.3 35.000 120 73 3 3 118 195 313 7.02e-19 81.3
Msa1281000 AT5G47750.1 37.864 103 60 1 20 118 426 528 7.02e-19 81.6
Msa1281000 AT3G01090.2 38.843 121 65 4 3 118 179 295 7.21e-19 81.6
Msa1281000 AT2G25090.1 37.594 133 68 4 1 120 151 281 7.28e-19 81.3
Msa1281000 AT2G35890.2 34.677 124 76 3 3 122 273 395 7.28e-19 81.6
Msa1281000 AT2G35890.1 34.677 124 76 3 3 122 273 395 7.28e-19 81.6
Msa1281000 AT2G38910.1 35.000 120 73 3 3 118 275 393 8.35e-19 81.3
Msa1281000 AT5G55910.2 37.736 106 62 1 17 118 342 447 9.57e-19 81.3
Msa1281000 AT5G55910.1 37.736 106 62 1 17 118 342 447 9.57e-19 81.3
Msa1281000 AT3G20830.1 37.069 116 68 2 11 126 234 344 1.02e-18 80.9
Msa1281000 AT1G12580.1 34.426 122 73 4 3 119 185 304 1.09e-18 80.9
Msa1281000 AT3G57530.2 36.667 120 71 3 3 118 204 322 1.09e-18 80.9
Msa1281000 AT1G30270.3 34.400 125 74 3 1 119 69 191 1.27e-18 80.5
Msa1281000 AT3G51850.2 35.000 120 73 3 3 118 195 313 1.38e-18 80.9
Msa1281000 AT3G51850.1 35.000 120 73 3 3 118 195 313 1.43e-18 80.9
Msa1281000 AT1G49580.1 33.884 121 75 3 2 118 294 413 1.43e-18 80.9
Msa1281000 AT3G57530.1 36.667 120 71 3 3 118 204 322 1.48e-18 80.5
Msa1281000 AT5G39440.1 36.207 116 70 2 3 116 156 269 1.63e-18 80.5
Msa1281000 AT1G01140.2 34.400 125 76 2 1 119 154 278 1.81e-18 80.1
Msa1281000 AT5G04870.1 35.000 120 73 3 3 118 291 409 1.88e-18 80.5
Msa1281000 AT1G30270.1 34.400 125 74 3 1 119 166 288 2.03e-18 80.1
Msa1281000 AT1G30270.2 34.400 125 74 3 1 119 166 288 2.25e-18 80.1
Msa1281000 AT3G50530.1 34.146 123 76 3 2 120 292 413 2.37e-18 80.1
Msa1281000 AT2G17290.1 37.398 123 72 3 3 121 226 347 2.56e-18 80.1
Msa1281000 AT2G17290.2 37.398 123 72 3 3 121 226 347 2.56e-18 80.1
Msa1281000 AT4G26610.1 37.864 103 60 1 20 118 355 457 2.60e-18 80.1
Msa1281000 AT3G27580.2 38.835 103 59 1 20 118 415 517 2.62e-18 80.1
Msa1281000 AT3G27580.1 38.835 103 59 1 20 118 415 517 2.62e-18 80.1
Msa1281000 AT1G76040.1 31.858 113 74 2 10 120 24 135 2.86e-18 79.0
Msa1281000 AT1G76040.4 31.858 113 74 2 10 120 24 135 2.86e-18 79.0
Msa1281000 AT5G58140.3 43.678 87 49 0 20 106 763 849 3.06e-18 79.7
Msa1281000 AT1G18890.1 37.500 120 70 4 3 118 204 322 3.14e-18 79.7
Msa1281000 AT2G44830.2 36.792 106 63 1 17 118 593 698 3.74e-18 79.7
Msa1281000 AT2G44830.3 36.792 106 63 1 17 118 593 698 3.74e-18 79.7
Msa1281000 AT2G44830.1 36.792 106 63 1 17 118 593 698 3.74e-18 79.7
Msa1281000 AT3G10660.2 34.167 120 74 3 3 118 327 445 3.74e-18 79.7
Msa1281000 AT3G10660.1 34.167 120 74 3 3 118 327 445 3.74e-18 79.7
Msa1281000 AT5G58140.6 43.678 87 49 0 20 106 763 849 3.95e-18 79.3
Msa1281000 AT5G58140.7 43.678 87 49 0 20 106 763 849 3.95e-18 79.3
Msa1281000 AT5G58140.5 43.678 87 49 0 20 106 763 849 3.95e-18 79.3
Msa1281000 AT5G58140.2 43.678 87 49 0 20 106 763 849 3.95e-18 79.3
Msa1281000 AT5G58140.1 43.678 87 49 0 20 106 763 849 3.95e-18 79.3
Msa1281000 AT3G19100.1 34.454 119 73 3 3 117 289 406 4.67e-18 79.3
Msa1281000 AT1G74740.1 36.667 120 71 4 3 118 200 318 5.56e-18 79.0
Msa1281000 AT3G29160.3 37.190 121 67 4 3 118 157 273 6.89e-18 78.2
Msa1281000 AT1G51170.1 35.345 116 70 2 11 126 233 343 7.68e-18 78.2
Msa1281000 AT2G26980.5 35.714 126 73 3 1 120 149 272 7.95e-18 78.6
Msa1281000 AT2G26980.1 35.714 126 73 3 1 120 149 272 8.33e-18 78.2
Msa1281000 AT4G30960.1 31.538 130 81 3 1 124 158 285 9.84e-18 78.2
Msa1281000 AT3G29160.1 37.190 121 67 4 3 118 157 273 1.05e-17 78.2
Msa1281000 AT3G29160.2 37.190 121 67 4 3 118 157 273 1.05e-17 78.2
Msa1281000 AT4G40010.1 36.364 121 70 3 3 116 139 259 1.06e-17 77.8
Msa1281000 AT1G78290.3 35.714 126 74 3 2 120 138 263 1.08e-17 77.4
Msa1281000 AT1G78290.2 35.714 126 74 3 2 120 138 263 1.08e-17 77.4
Msa1281000 AT2G26980.3 35.714 126 73 3 1 120 149 272 1.17e-17 77.8
Msa1281000 AT3G08720.1 36.000 125 70 4 1 118 275 396 1.21e-17 78.2
Msa1281000 AT3G08720.3 36.000 125 70 4 1 118 275 396 1.21e-17 78.2
Msa1281000 AT3G08720.4 36.000 125 70 4 1 118 275 396 1.21e-17 78.2
Msa1281000 AT3G08720.2 36.000 125 70 4 1 118 275 396 1.21e-17 78.2
Msa1281000 AT2G26980.4 35.714 126 73 3 1 120 159 282 1.31e-17 77.8
Msa1281000 AT4G38230.1 36.585 123 73 3 3 121 21 142 1.38e-17 77.4
Msa1281000 AT5G21222.1 35.484 124 72 3 3 120 150 271 1.39e-17 77.8
Msa1281000 AT5G21222.2 35.484 124 72 3 3 120 150 271 1.39e-17 77.8
Msa1281000 AT5G21222.4 35.484 124 72 3 3 120 150 271 1.39e-17 77.8
Msa1281000 AT5G21222.3 35.484 124 72 3 3 120 150 271 1.39e-17 77.8
Msa1281000 AT4G38230.4 36.585 123 73 3 3 121 165 286 1.84e-17 77.4
Msa1281000 AT4G38230.3 36.585 123 73 3 3 121 165 286 1.84e-17 77.4
Msa1281000 AT3G08730.1 35.200 125 71 4 1 118 269 390 1.86e-17 77.4
Msa1281000 AT3G08730.2 35.200 125 71 4 1 118 269 390 1.86e-17 77.4
Msa1281000 AT5G01810.3 33.333 126 76 3 1 120 146 269 1.87e-17 77.0
Msa1281000 AT4G38230.2 36.585 123 73 3 3 121 195 316 1.92e-17 77.4
Msa1281000 AT4G23650.1 34.959 123 75 3 3 121 219 340 2.03e-17 77.4
Msa1281000 AT4G04710.2 36.885 122 68 5 3 121 181 296 2.07e-17 77.4
Msa1281000 AT4G04710.3 36.885 122 68 5 3 121 167 282 2.21e-17 77.4
Msa1281000 AT5G01810.1 33.333 126 76 3 1 120 146 269 2.30e-17 77.0
Msa1281000 AT5G01810.2 33.333 126 76 3 1 120 146 269 2.30e-17 77.0
Msa1281000 AT2G31500.1 34.426 122 75 4 1 118 205 325 2.35e-17 77.4
Msa1281000 AT4G35310.2 36.585 123 73 3 3 121 238 359 2.83e-17 77.0
Msa1281000 AT4G35310.1 36.585 123 73 3 3 121 238 359 2.83e-17 77.0
Msa1281000 AT1G01140.3 34.400 125 74 3 1 119 154 276 3.00e-17 77.0
Msa1281000 AT1G01140.1 34.400 125 74 3 1 119 154 276 3.28e-17 76.6
Msa1281000 AT3G14370.1 40.566 106 54 3 19 117 293 396 3.52e-17 76.6
Msa1281000 AT5G57630.3 36.066 122 72 4 1 118 58 177 5.63e-17 75.5
Msa1281000 AT3G53930.2 31.200 125 82 3 3 123 159 283 6.35e-17 75.9
Msa1281000 AT3G53930.1 31.200 125 82 3 3 123 159 283 6.79e-17 75.9
Msa1281000 AT5G66880.1 37.302 126 72 4 2 120 156 281 6.89e-17 75.5
Msa1281000 AT5G66880.2 37.302 126 72 4 2 120 156 281 6.89e-17 75.5
Msa1281000 AT5G09890.1 40.385 104 56 3 20 118 303 405 7.20e-17 75.9
Msa1281000 AT5G09890.2 40.385 104 56 3 20 118 303 405 7.20e-17 75.9
Msa1281000 AT3G50500.1 34.921 126 75 3 2 120 157 282 7.43e-17 75.5
Msa1281000 AT5G23580.1 36.066 122 73 3 3 120 163 283 7.66e-17 75.9
Msa1281000 AT5G57630.1 36.066 122 72 4 1 118 146 265 1.01e-16 75.1
Msa1281000 AT5G57630.2 36.066 122 72 4 1 118 146 265 1.03e-16 75.1
Msa1281000 AT5G35410.2 33.065 124 77 3 1 120 146 267 1.13e-16 75.1
Msa1281000 AT1G45160.2 39.048 105 60 2 18 118 852 956 1.21e-16 75.1
Msa1281000 AT1G45160.1 39.048 105 60 2 18 118 852 956 1.22e-16 75.1
Msa1281000 AT5G19450.2 35.833 120 72 3 3 118 198 316 1.35e-16 75.1
Msa1281000 AT5G19450.1 35.833 120 72 3 3 118 198 316 1.35e-16 75.1
Msa1281000 AT5G21326.1 34.921 126 74 3 1 120 148 271 1.37e-16 75.1
Msa1281000 AT2G17890.1 31.250 128 83 3 3 126 251 377 1.45e-16 75.1
Msa1281000 AT5G35410.1 33.065 124 77 3 1 120 146 267 1.45e-16 74.7
Msa1281000 AT1G35670.1 35.537 121 73 3 1 117 165 284 1.46e-16 75.1
Msa1281000 AT5G45820.1 33.846 130 70 4 1 120 146 269 1.57e-16 74.7
Msa1281000 AT2G23030.1 35.714 126 74 3 2 120 138 263 1.64e-16 74.3
Msa1281000 AT5G24430.1 30.579 121 79 3 3 119 288 407 1.86e-16 74.7
Msa1281000 AT4G09570.1 34.711 121 74 3 1 117 164 283 1.98e-16 74.7
Msa1281000 AT5G12480.2 34.454 119 73 3 3 117 106 223 2.96e-16 73.9
Msa1281000 AT3G50530.2 34.314 102 64 2 21 120 344 444 3.13e-16 73.9
Msa1281000 AT5G62310.1 34.259 108 67 2 16 119 938 1045 3.31e-16 73.9
Msa1281000 AT1G48260.2 34.646 127 73 4 1 120 61 184 3.61e-16 73.6
Msa1281000 AT1G48260.4 34.646 127 73 4 1 120 61 184 3.61e-16 73.6
Msa1281000 AT1G48260.3 34.646 127 73 4 1 120 61 184 3.61e-16 73.6
Msa1281000 AT1G48260.5 34.646 127 73 4 1 120 61 184 3.61e-16 73.6
Msa1281000 AT2G46700.2 30.081 123 81 3 3 121 107 228 3.68e-16 73.6
Msa1281000 AT2G46700.3 30.081 123 81 3 3 121 107 228 3.68e-16 73.6
Msa1281000 AT1G53700.1 41.935 93 53 1 19 110 297 389 3.74e-16 73.9
Msa1281000 AT4G18700.1 34.109 129 77 3 1 123 160 286 3.77e-16 73.9
Msa1281000 AT5G40030.1 37.037 108 63 2 14 117 337 443 4.10e-16 73.6
Msa1281000 AT5G12480.1 34.454 119 73 3 3 117 200 317 4.12e-16 73.6
Msa1281000 AT2G46700.1 30.081 123 81 3 3 121 288 409 4.27e-16 73.6
Msa1281000 AT1G48260.1 34.646 127 73 4 1 120 146 269 5.00e-16 73.2
Msa1281000 AT4G24400.2 34.167 120 73 3 1 116 144 261 6.28e-16 73.2
Msa1281000 AT2G26700.1 40.000 105 55 2 17 113 354 458 7.21e-16 72.8
Msa1281000 AT4G24400.1 34.167 120 73 3 1 116 144 261 7.24e-16 72.8
Msa1281000 AT3G17850.1 35.354 99 63 1 16 113 1066 1164 8.61e-16 72.8
Msa1281000 AT3G23000.1 32.000 125 78 3 1 120 161 283 1.12e-15 72.4
Msa1281000 AT4G04710.4 34.351 131 72 4 3 121 181 309 1.30e-15 72.4
Msa1281000 AT4G04710.1 34.351 131 72 4 3 121 181 309 1.35e-15 72.0
Msa1281000 AT2G37840.1 30.400 125 83 3 3 123 151 275 1.40e-15 72.0
Msa1281000 AT1G08650.2 32.258 124 78 3 3 122 155 276 1.45e-15 71.2
Msa1281000 AT5G66210.6 30.469 128 84 3 3 126 205 331 1.84e-15 71.6
Msa1281000 AT5G66210.4 30.469 128 84 3 3 126 205 331 1.84e-15 71.6
Msa1281000 AT3G56760.1 33.613 119 74 3 3 117 269 386 2.05e-15 71.6
Msa1281000 AT3G49370.1 30.579 121 79 3 3 119 287 406 2.05e-15 71.6
Msa1281000 AT5G66210.5 30.469 128 84 3 3 126 205 331 2.19e-15 71.6
Msa1281000 AT2G34650.1 36.792 106 60 2 20 118 290 395 2.25e-15 71.6
Msa1281000 AT2G30360.1 33.333 123 74 3 1 117 157 277 2.30e-15 71.6
Msa1281000 AT5G66210.3 30.469 128 84 3 3 126 205 331 2.32e-15 71.6
Msa1281000 AT5G66210.1 30.469 128 84 3 3 126 205 331 2.49e-15 71.2
Msa1281000 AT5G66210.2 30.469 128 84 3 3 126 205 331 2.49e-15 71.2
Msa1281000 AT5G45810.1 34.109 129 77 3 1 123 162 288 3.24e-15 71.2
Msa1281000 AT3G61960.2 29.323 133 84 4 3 125 149 281 3.53e-15 70.9
Msa1281000 AT3G61960.1 29.323 133 84 4 3 125 149 281 3.63e-15 70.9
Msa1281000 AT2G26980.2 38.462 104 56 3 1 98 149 250 7.01e-15 69.3
Msa1281000 AT2G41140.1 32.773 119 75 3 3 117 268 385 7.28e-15 70.1
Msa1281000 AT4G33080.2 37.607 117 64 4 10 119 290 404 1.36e-14 69.3
Msa1281000 AT4G04695.1 30.579 121 79 3 3 119 173 292 1.58e-14 68.9
Msa1281000 AT4G33080.1 37.607 117 64 4 10 119 290 404 1.65e-14 68.9
Msa1281000 AT3G50500.2 33.083 133 75 4 2 120 157 289 1.66e-14 68.9
Msa1281000 AT3G06030.1 31.707 123 78 2 1 117 208 330 1.84e-14 68.9
Msa1281000 AT2G34180.1 29.545 132 81 4 1 124 191 318 1.93e-14 68.9
Msa1281000 AT4G36070.1 30.469 128 84 3 3 126 214 340 1.93e-14 68.9
Msa1281000 AT4G36070.2 30.469 128 84 3 3 126 214 340 2.01e-14 68.9
Msa1281000 AT4G04700.1 30.579 121 79 3 3 119 173 292 4.25e-14 67.8
Msa1281000 AT3G17510.2 32.800 125 74 4 1 118 75 196 5.39e-14 67.4
Msa1281000 AT2G19400.1 34.188 117 69 3 10 119 301 416 9.27e-14 67.0
Msa1281000 AT3G17510.1 32.800 125 74 4 1 118 155 276 1.13e-13 66.6
Msa1281000 AT1G03920.2 34.951 103 63 2 20 118 221 323 1.30e-13 66.6
Msa1281000 AT1G03920.1 34.951 103 63 2 20 118 334 436 1.33e-13 66.6
Msa1281000 AT1G03920.3 34.951 103 63 2 20 118 334 436 1.33e-13 66.6
Msa1281000 AT1G50240.3 32.787 122 75 3 3 120 141 259 1.65e-13 66.2
Msa1281000 AT1G50240.2 32.787 122 75 3 3 120 141 259 1.65e-13 66.2
Msa1281000 AT5G56580.1 31.783 129 78 4 1 119 205 333 2.07e-13 65.9
Msa1281000 AT3G10540.1 32.847 137 70 4 1 118 180 313 2.21e-13 65.9
Msa1281000 AT5G18700.1 35.115 131 71 5 1 122 133 258 3.07e-13 65.5
Msa1281000 AT3G15220.1 32.258 124 75 4 1 118 148 268 3.26e-13 65.5
Msa1281000 AT3G23310.1 36.893 103 59 3 20 117 320 421 4.73e-13 65.1
Msa1281000 AT5G04510.1 34.454 119 61 3 1 105 179 294 8.42e-13 64.3
Msa1281000 AT5G04510.2 34.454 119 61 3 1 105 179 294 8.92e-13 63.9
Msa1281000 AT5G04510.3 35.398 113 58 2 1 100 179 289 1.26e-12 63.2
Msa1281000 AT4G14350.3 36.538 104 60 3 20 118 317 419 1.33e-12 63.5
Msa1281000 AT4G14350.2 36.538 104 60 3 20 118 317 419 1.43e-12 63.5
Msa1281000 AT4G14350.1 36.538 104 60 3 20 118 317 419 1.43e-12 63.5
Msa1281000 AT4G14350.4 36.538 104 60 3 20 118 317 419 1.43e-12 63.5
Msa1281000 AT3G45240.3 30.508 118 79 2 1 117 251 366 1.44e-12 63.5
Msa1281000 AT5G14720.1 32.061 131 73 4 1 118 151 278 1.99e-12 63.2
Msa1281000 AT5G14720.2 32.061 131 73 4 1 118 151 278 1.99e-12 63.2
Msa1281000 AT1G54960.1 27.642 123 83 2 1 117 208 330 2.47e-12 62.8
Msa1281000 AT1G54960.2 27.642 123 83 2 1 117 208 330 2.47e-12 62.8
Msa1281000 AT1G30640.3 35.577 104 61 3 20 118 229 331 2.78e-12 62.8
Msa1281000 AT1G30640.2 35.577 104 61 3 20 118 322 424 3.21e-12 62.4
Msa1281000 AT1G30640.1 35.577 104 61 3 20 118 322 424 3.21e-12 62.4
Msa1281000 AT1G53165.1 31.452 124 76 4 1 118 148 268 6.48e-12 61.6
Msa1281000 AT2G37840.2 26.957 115 82 2 11 123 24 138 6.63e-12 61.6
Msa1281000 AT1G53165.2 31.452 124 76 4 1 118 148 268 6.68e-12 61.6
Msa1281000 AT1G53165.3 31.452 124 76 4 1 118 148 268 6.82e-12 61.6
Msa1281000 AT1G09000.2 28.455 123 82 2 1 117 209 331 7.27e-12 61.6
Msa1281000 AT1G09000.1 28.455 123 82 2 1 117 209 331 8.48e-12 61.2
Msa1281000 AT4G29810.2 29.457 129 81 3 1 119 213 341 2.48e-11 60.1
Msa1281000 AT5G40440.5 30.645 124 82 2 1 120 137 260 2.59e-11 60.1
Msa1281000 AT5G40440.4 30.645 124 82 2 1 120 219 342 2.65e-11 60.1
Msa1281000 AT5G40440.1 30.645 124 82 2 1 120 219 342 2.65e-11 60.1
Msa1281000 AT5G40440.6 30.645 124 82 2 1 120 201 324 2.87e-11 59.7
Msa1281000 AT5G40440.3 30.645 124 82 2 1 120 201 324 2.87e-11 59.7
Msa1281000 AT5G40440.2 30.645 124 82 2 1 120 201 324 2.87e-11 59.7
Msa1281000 AT4G29810.1 29.457 129 81 3 1 119 204 332 2.95e-11 59.7
Msa1281000 AT2G20470.3 37.079 89 50 2 16 98 312 400 4.14e-11 59.3
Msa1281000 AT2G20470.2 37.079 89 50 2 16 98 312 400 5.08e-11 59.3
Msa1281000 AT2G20470.1 37.079 89 50 2 16 98 312 400 5.08e-11 59.3

Find 30 sgRNAs with CRISPR-Local

Find 99 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATAGTCAGACTCTTGATTT+TGG 0.163193 8_3:+20067400 Msa1281000:three_prime_UTR
ACATAGTGATCATTTGAAAT+TGG 0.216025 8_3:-20067519 None:intergenic
CTTTGTTATGAGTTCCTCTA+TGG 0.255805 8_3:+20066915 Msa1281000:CDS
ATGATTATGCAGTTGATAAC+TGG 0.345815 8_3:+20066880 Msa1281000:CDS
TGGTAAAAGATTCTTCAAAA+AGG 0.365643 8_3:+20067256 Msa1281000:CDS
TGAACCTAACTTCTCATTTG+TGG 0.386707 8_3:-20067556 None:intergenic
GCTCTCACTTCAGAAGATAA+TGG 0.391255 8_3:+20067278 Msa1281000:CDS
AGTCTGACTATCATATGAAT+TGG 0.394422 8_3:-20067389 None:intergenic
CTATGGTGCTCCTCCATTTG+AGG 0.418527 8_3:+20066932 Msa1281000:CDS
AGAAGATAATGGAGCATCCT+TGG 0.437440 8_3:+20067289 Msa1281000:CDS
TTTAGAATGTATGTAAATCA+AGG 0.448932 8_3:+20067474 Msa1281000:three_prime_UTR
TCTTGACTCTCAGCCTCAAA+TGG 0.450796 8_3:-20066945 None:intergenic
TGCAGTTGATAACTGGACTC+TGG 0.457988 8_3:+20066887 Msa1281000:CDS
TAGAAACATGAGGGGTAGGA+GGG 0.458138 8_3:-20067117 None:intergenic
CGTCTGAAGATTGCAGACTT+TGG 0.458205 8_3:+20066771 Msa1281000:CDS
ATTTGAAATTGGAATGATAG+AGG 0.464808 8_3:-20067508 None:intergenic
GGATTATTTAGCTCCTGAAA+TGG 0.479853 8_3:+20066842 Msa1281000:CDS
TGAAGATTGCAGACTTTGGT+TGG 0.482897 8_3:+20066775 Msa1281000:CDS
AAAGACAATGTGTGGAACAT+TGG 0.485065 8_3:+20066821 Msa1281000:CDS
TTAGAAACATGAGGGGTAGG+AGG 0.501914 8_3:-20067118 None:intergenic
GTCAAGAAGATGCCTTCAAA+AGG 0.510997 8_3:+20066961 Msa1281000:CDS
AAAAGAGAATGCAAACCATA+CGG 0.521326 8_3:+20067314 Msa1281000:CDS
TTTGAAATTGGAATGATAGA+GGG 0.551307 8_3:-20067507 None:intergenic
GCAGTTGATAACTGGACTCT+GGG 0.568132 8_3:+20066888 Msa1281000:CDS
AAAGAGAATGCAAACCATAC+GGG 0.577057 8_3:+20067315 Msa1281000:CDS
TTGAAATTGGAATGATAGAG+GGG 0.603813 8_3:-20067506 None:intergenic
CAAATGGAGGAGCACCATAG+AGG 0.612830 8_3:-20066929 None:intergenic
ACTACTCGCAGACACCCGTA+TGG 0.631367 8_3:-20067329 None:intergenic
TGACTCTCAGCCTCAAATGG+AGG 0.633701 8_3:-20066942 None:intergenic
CCTGAAATGGTAGAAAACAA+AGG 0.636118 8_3:+20066855 Msa1281000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTACATTACATATATACAT+AGG - chr8_3:20067055-20067074 None:intergenic 15.0%
!! ATTACATTACATATATACAT+AGG - chr8_3:20067055-20067074 None:intergenic 15.0%
!! TAATGTATTTAAACTTGTGT+AGG + chr8_3:20067071-20067090 Msa1281000:intron 20.0%
!!! TTTAGAATGTATGTAAATCA+AGG + chr8_3:20067474-20067493 Msa1281000:three_prime_UTR 20.0%
!! TAATGTATTTAAACTTGTGT+AGG + chr8_3:20067071-20067090 Msa1281000:intron 20.0%
!!! TTTAGAATGTATGTAAATCA+AGG + chr8_3:20067474-20067493 Msa1281000:three_prime_UTR 20.0%
! AAAAAAAGAAAGACAATGTG+TGG + chr8_3:20066813-20066832 Msa1281000:CDS 25.0%
! ACATTTACATATCCATGATT+AGG + chr8_3:20067194-20067213 Msa1281000:intron 25.0%
! TGGTAAAAGATTCTTCAAAA+AGG + chr8_3:20067256-20067275 Msa1281000:CDS 25.0%
!! TTTGAAATTGGAATGATAGA+GGG - chr8_3:20067510-20067529 None:intergenic 25.0%
!! ATTTGAAATTGGAATGATAG+AGG - chr8_3:20067511-20067530 None:intergenic 25.0%
!! ACATAGTGATCATTTGAAAT+TGG - chr8_3:20067522-20067541 None:intergenic 25.0%
! AAAAAAAGAAAGACAATGTG+TGG + chr8_3:20066813-20066832 Msa1281000:CDS 25.0%
! ACATTTACATATCCATGATT+AGG + chr8_3:20067194-20067213 Msa1281000:intron 25.0%
! TGGTAAAAGATTCTTCAAAA+AGG + chr8_3:20067256-20067275 Msa1281000:CDS 25.0%
!! TTTGAAATTGGAATGATAGA+GGG - chr8_3:20067510-20067529 None:intergenic 25.0%
!! ATTTGAAATTGGAATGATAG+AGG - chr8_3:20067511-20067530 None:intergenic 25.0%
!! ACATAGTGATCATTTGAAAT+TGG - chr8_3:20067522-20067541 None:intergenic 25.0%
!! ATGATTATGCAGTTGATAAC+TGG + chr8_3:20066880-20066899 Msa1281000:CDS 30.0%
!! TGGCATTTTTAGAAACATGA+GGG - chr8_3:20067129-20067148 None:intergenic 30.0%
!! TTGGCATTTTTAGAAACATG+AGG - chr8_3:20067130-20067149 None:intergenic 30.0%
ATGCCAAAAATCTGATAAGT+CGG + chr8_3:20067143-20067162 Msa1281000:CDS 30.0%
! TTTGCATTCTCTTTTATCCA+AGG - chr8_3:20067309-20067328 None:intergenic 30.0%
AAAAGAGAATGCAAACCATA+CGG + chr8_3:20067314-20067333 Msa1281000:CDS 30.0%
AGTCTGACTATCATATGAAT+TGG - chr8_3:20067392-20067411 None:intergenic 30.0%
TTGAAATTGGAATGATAGAG+GGG - chr8_3:20067509-20067528 None:intergenic 30.0%
!! ATGATTATGCAGTTGATAAC+TGG + chr8_3:20066880-20066899 Msa1281000:CDS 30.0%
!! TGGCATTTTTAGAAACATGA+GGG - chr8_3:20067129-20067148 None:intergenic 30.0%
!! TTGGCATTTTTAGAAACATG+AGG - chr8_3:20067130-20067149 None:intergenic 30.0%
ATGCCAAAAATCTGATAAGT+CGG + chr8_3:20067143-20067162 Msa1281000:CDS 30.0%
! TTTGCATTCTCTTTTATCCA+AGG - chr8_3:20067309-20067328 None:intergenic 30.0%
AAAAGAGAATGCAAACCATA+CGG + chr8_3:20067314-20067333 Msa1281000:CDS 30.0%
AGTCTGACTATCATATGAAT+TGG - chr8_3:20067392-20067411 None:intergenic 30.0%
TTGAAATTGGAATGATAGAG+GGG - chr8_3:20067509-20067528 None:intergenic 30.0%
AAAGACAATGTGTGGAACAT+TGG + chr8_3:20066821-20066840 Msa1281000:CDS 35.0%
! GGATTATTTAGCTCCTGAAA+TGG + chr8_3:20066842-20066861 Msa1281000:CDS 35.0%
!!! CCTTTGTTTTCTACCATTTC+AGG - chr8_3:20066858-20066877 None:intergenic 35.0%
CCTGAAATGGTAGAAAACAA+AGG + chr8_3:20066855-20066874 Msa1281000:CDS 35.0%
! CTTTGTTATGAGTTCCTCTA+TGG + chr8_3:20066915-20066934 Msa1281000:CDS 35.0%
! ACTCATTCCATACCTTTTGA+AGG - chr8_3:20066976-20066995 None:intergenic 35.0%
GTATGGAATGAGTTCCTTTA+TGG + chr8_3:20066983-20067002 Msa1281000:intron 35.0%
!! TTTTTAGAAACATGAGGGGT+AGG - chr8_3:20067124-20067143 None:intergenic 35.0%
!! GGCATTTTTAGAAACATGAG+GGG - chr8_3:20067128-20067147 None:intergenic 35.0%
TGCCAAAAATCTGATAAGTC+GGG + chr8_3:20067144-20067163 Msa1281000:CDS 35.0%
! TACCCGACTTATCAGATTTT+TGG - chr8_3:20067149-20067168 None:intergenic 35.0%
TAAGAAGAACAGCCTAATCA+TGG - chr8_3:20067209-20067228 None:intergenic 35.0%
ATGTAAATTTGTGCAGCTAC+TGG + chr8_3:20067236-20067255 Msa1281000:intron 35.0%
AAAGAGAATGCAAACCATAC+GGG + chr8_3:20067315-20067334 Msa1281000:CDS 35.0%
! TTACGACGACTTTTTACATG+TGG + chr8_3:20067363-20067382 Msa1281000:three_prime_UTR 35.0%
! GATAGTCAGACTCTTGATTT+TGG + chr8_3:20067400-20067419 Msa1281000:three_prime_UTR 35.0%
AAAGACAATGTGTGGAACAT+TGG + chr8_3:20066821-20066840 Msa1281000:CDS 35.0%
! GGATTATTTAGCTCCTGAAA+TGG + chr8_3:20066842-20066861 Msa1281000:CDS 35.0%
!!! CCTTTGTTTTCTACCATTTC+AGG - chr8_3:20066858-20066877 None:intergenic 35.0%
CCTGAAATGGTAGAAAACAA+AGG + chr8_3:20066855-20066874 Msa1281000:CDS 35.0%
! CTTTGTTATGAGTTCCTCTA+TGG + chr8_3:20066915-20066934 Msa1281000:CDS 35.0%
! ACTCATTCCATACCTTTTGA+AGG - chr8_3:20066976-20066995 None:intergenic 35.0%
GTATGGAATGAGTTCCTTTA+TGG + chr8_3:20066983-20067002 Msa1281000:intron 35.0%
!! TTTTTAGAAACATGAGGGGT+AGG - chr8_3:20067124-20067143 None:intergenic 35.0%
!! GGCATTTTTAGAAACATGAG+GGG - chr8_3:20067128-20067147 None:intergenic 35.0%
TGCCAAAAATCTGATAAGTC+GGG + chr8_3:20067144-20067163 Msa1281000:CDS 35.0%
! TACCCGACTTATCAGATTTT+TGG - chr8_3:20067149-20067168 None:intergenic 35.0%
TAAGAAGAACAGCCTAATCA+TGG - chr8_3:20067209-20067228 None:intergenic 35.0%
ATGTAAATTTGTGCAGCTAC+TGG + chr8_3:20067236-20067255 Msa1281000:intron 35.0%
AAAGAGAATGCAAACCATAC+GGG + chr8_3:20067315-20067334 Msa1281000:CDS 35.0%
! TTACGACGACTTTTTACATG+TGG + chr8_3:20067363-20067382 Msa1281000:three_prime_UTR 35.0%
! GATAGTCAGACTCTTGATTT+TGG + chr8_3:20067400-20067419 Msa1281000:three_prime_UTR 35.0%
TGAAGATTGCAGACTTTGGT+TGG + chr8_3:20066775-20066794 Msa1281000:CDS 40.0%
GTCAAGAAGATGCCTTCAAA+AGG + chr8_3:20066961-20066980 Msa1281000:CDS 40.0%
GAAGATGCCTTCAAAAGGTA+TGG + chr8_3:20066966-20066985 Msa1281000:intron 40.0%
GCTCTCACTTCAGAAGATAA+TGG + chr8_3:20067278-20067297 Msa1281000:CDS 40.0%
!! AGAAGATAATGGAGCATCCT+TGG + chr8_3:20067289-20067308 Msa1281000:CDS 40.0%
TGCTCATGTTGAACCACAAA+TGG + chr8_3:20067543-20067562 Msa1281000:three_prime_UTR 40.0%
TGAAGATTGCAGACTTTGGT+TGG + chr8_3:20066775-20066794 Msa1281000:CDS 40.0%
GTCAAGAAGATGCCTTCAAA+AGG + chr8_3:20066961-20066980 Msa1281000:CDS 40.0%
GAAGATGCCTTCAAAAGGTA+TGG + chr8_3:20066966-20066985 Msa1281000:intron 40.0%
GCTCTCACTTCAGAAGATAA+TGG + chr8_3:20067278-20067297 Msa1281000:CDS 40.0%
!! AGAAGATAATGGAGCATCCT+TGG + chr8_3:20067289-20067308 Msa1281000:CDS 40.0%
CGTCTGAAGATTGCAGACTT+TGG + chr8_3:20066771-20066790 Msa1281000:CDS 45.0%
!! TGCAGTTGATAACTGGACTC+TGG + chr8_3:20066887-20066906 Msa1281000:CDS 45.0%
!! GCAGTTGATAACTGGACTCT+GGG + chr8_3:20066888-20066907 Msa1281000:CDS 45.0%
TCTTGACTCTCAGCCTCAAA+TGG - chr8_3:20066948-20066967 None:intergenic 45.0%
TAGAAACATGAGGGGTAGGA+GGG - chr8_3:20067120-20067139 None:intergenic 45.0%
TTAGAAACATGAGGGGTAGG+AGG - chr8_3:20067121-20067140 None:intergenic 45.0%
CGTCTGAAGATTGCAGACTT+TGG + chr8_3:20066771-20066790 Msa1281000:CDS 45.0%
!! TGCAGTTGATAACTGGACTC+TGG + chr8_3:20066887-20066906 Msa1281000:CDS 45.0%
!! GCAGTTGATAACTGGACTCT+GGG + chr8_3:20066888-20066907 Msa1281000:CDS 45.0%
TCTTGACTCTCAGCCTCAAA+TGG - chr8_3:20066948-20066967 None:intergenic 45.0%
TAGAAACATGAGGGGTAGGA+GGG - chr8_3:20067120-20067139 None:intergenic 45.0%
TTAGAAACATGAGGGGTAGG+AGG - chr8_3:20067121-20067140 None:intergenic 45.0%
!! CAAATGGAGGAGCACCATAG+AGG - chr8_3:20066932-20066951 None:intergenic 50.0%
CTATGGTGCTCCTCCATTTG+AGG + chr8_3:20066932-20066951 Msa1281000:CDS 50.0%
TGACTCTCAGCCTCAAATGG+AGG - chr8_3:20066945-20066964 None:intergenic 50.0%
!! CAAATGGAGGAGCACCATAG+AGG - chr8_3:20066932-20066951 None:intergenic 50.0%
CTATGGTGCTCCTCCATTTG+AGG + chr8_3:20066932-20066951 Msa1281000:CDS 50.0%
TGACTCTCAGCCTCAAATGG+AGG - chr8_3:20066945-20066964 None:intergenic 50.0%
ACTACTCGCAGACACCCGTA+TGG - chr8_3:20067332-20067351 None:intergenic 55.0%
ACTACTCGCAGACACCCGTA+TGG - chr8_3:20067332-20067351 None:intergenic 55.0%
TGCGCGCGCGCACGCCATAA+AGG - chr8_3:20067000-20067019 None:intergenic 70.0%
TGCGCGCGCGCACGCCATAA+AGG - chr8_3:20067000-20067019 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 20066768 20067563 20066768 ID=Msa1281000;Name=Msa1281000
chr8_3 mRNA 20066768 20067563 20066768 ID=Msa1281000-mRNA-1;Parent=Msa1281000;Name=Msa1281000-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.66|1|1|1|3|213|128
chr8_3 exon 20066768 20066982 20066768 ID=Msa1281000-mRNA-1:exon:7362;Parent=Msa1281000-mRNA-1
chr8_3 exon 20067093 20067165 20067093 ID=Msa1281000-mRNA-1:exon:7363;Parent=Msa1281000-mRNA-1
chr8_3 exon 20067252 20067563 20067252 ID=Msa1281000-mRNA-1:exon:7364;Parent=Msa1281000-mRNA-1
chr8_3 CDS 20066768 20066982 20066768 ID=Msa1281000-mRNA-1:cds;Parent=Msa1281000-mRNA-1
chr8_3 CDS 20067093 20067165 20067093 ID=Msa1281000-mRNA-1:cds;Parent=Msa1281000-mRNA-1
chr8_3 CDS 20067252 20067350 20067252 ID=Msa1281000-mRNA-1:cds;Parent=Msa1281000-mRNA-1
chr8_3 three_prime_UTR 20067351 20067563 20067351 ID=Msa1281000-mRNA-1:three_prime_utr;Parent=Msa1281000-mRNA-1
Gene Sequence

>Msa1281000

GGTCGTCTGAAGATTGCAGACTTTGGTTGGTCTGTACAATCTGTAAAAAAAAGAAAGACAATGTGTGGAACATTGGATTATTTAGCTCCTGAAATGGTAGAAAACAAAGGTCATGATTATGCAGTTGATAACTGGACTCTGGGTATTCTTTGTTATGAGTTCCTCTATGGTGCTCCTCCATTTGAGGCTGAGAGTCAAGAAGATGCCTTCAAAAGGATAAGAGATGTTGATCTGAACTTCCCTCCTACCCCTCATGTTTCTAAAAATGCCAAAAATCTGATAAGTCGGCTACTGGTAAAAGATTCTTCAAAAAGGCTCTCACTTCAGAAGATAATGGAGCATCCTTGGATAAAAGAGAATGCAAACCATACGGGTGTCTGCGAGTAG
Protein sequence

>Msa1281000

GRLKIADFGWSVQSVKKRKTMCGTLDYLAPEMVENKGHDYAVDNWTLGILCYEFLYGAPPFEAESQEDAFKRIRDVDLNFPPTPHVSKNAKNLISRLLVKDSSKRLSLQKIMEHPWIKENANHTGVCE*