AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1281040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1281040 MtrunA17_Chr8g0361731 96.231 398 11 2 2 398 1 395 0.0 790
Msa1281040 MtrunA17_Chr5g0417001 60.789 431 95 11 2 398 1 391 1.16e-164 467
Msa1281040 MtrunA17_Chr6g0453131 49.878 411 172 12 2 398 1 391 5.09e-125 366
Msa1281040 MtrunA17_Chr5g0442771 50.439 228 104 3 9 233 12 233 7.39e-75 235
Msa1281040 MtrunA17_Chr2g0311651 60.753 186 63 6 12 191 19 200 5.07e-74 233
Msa1281040 MtrunA17_Chr2g0311661 63.314 169 55 4 12 174 18 185 1.90e-72 228
Msa1281040 MtrunA17_Chr2g0318101 45.455 209 101 3 17 213 17 224 1.27e-60 200
Msa1281040 MtrunA17_Chr4g0047841 52.273 176 70 2 17 178 17 192 1.72e-60 199
Msa1281040 MtrunA17_Chr4g0076731 51.163 172 72 3 12 183 51 210 4.98e-59 198
Msa1281040 MtrunA17_Chr7g0252971 54.217 166 64 4 17 175 10 170 2.73e-58 193
Msa1281040 MtrunA17_Chr5g0417791 42.972 249 121 7 17 263 5 234 1.09e-57 189
Msa1281040 MtrunA17_Chr4g0018391 36.578 339 157 9 17 352 9 292 4.34e-57 190
Msa1281040 MtrunA17_Chr2g0326361 51.445 173 79 2 2 174 1 168 8.74e-57 189
Msa1281040 MtrunA17_Chr8g0384721 53.165 158 66 3 17 174 9 158 7.40e-56 185
Msa1281040 MtrunA17_Chr4g0042561 55.000 160 65 3 17 176 11 163 1.39e-55 184
Msa1281040 MtrunA17_Chr3g0124761 48.634 183 67 4 17 186 9 177 3.15e-55 184
Msa1281040 MtrunA17_Chr5g0398971 49.133 173 74 3 17 186 9 170 2.12e-54 183
Msa1281040 MtrunA17_Chr6g0453451 41.270 252 120 6 9 246 16 253 1.78e-53 180
Msa1281040 MtrunA17_Chr4g0060931 45.876 194 83 3 17 197 19 203 2.67e-53 181
Msa1281040 MtrunA17_Chr7g0263931 50.595 168 73 4 13 177 8 168 3.69e-53 179
Msa1281040 MtrunA17_Chr2g0318081 49.451 182 80 5 17 198 18 187 4.08e-53 180
Msa1281040 MtrunA17_Chr4g0038751 48.649 185 76 5 2 185 4 170 6.44e-53 178
Msa1281040 MtrunA17_Chr8g0372121 43.367 196 93 5 11 202 2 183 6.84e-53 178
Msa1281040 MtrunA17_Chr3g0091921 50.898 167 73 2 9 175 10 167 9.37e-53 177
Msa1281040 MtrunA17_Chr3g0130731 51.266 158 68 3 17 174 9 157 1.98e-52 176
Msa1281040 MtrunA17_Chr4g0056541 47.619 168 72 3 17 181 9 163 2.59e-52 178
Msa1281040 MtrunA17_Chr5g0405211 45.109 184 83 5 9 187 2 172 3.54e-52 177
Msa1281040 MtrunA17_Chr8g0359921 51.497 167 71 5 17 183 16 172 5.95e-52 176
Msa1281040 MtrunA17_Chr2g0309891 50.932 161 67 4 17 175 8 158 7.95e-52 176
Msa1281040 MtrunA17_Chr6g0461661 45.455 176 88 2 12 186 14 182 1.27e-50 174
Msa1281040 MtrunA17_Chr2g0316971 50.000 162 70 2 17 176 25 177 4.80e-50 173
Msa1281040 MtrunA17_Chr6g0484441 37.956 274 136 8 11 269 1 255 7.19e-50 171
Msa1281040 MtrunA17_Chr3g0139331 48.864 176 76 3 2 177 1 162 9.90e-50 171
Msa1281040 MtrunA17_Chr7g0253011 40.948 232 109 5 2 212 1 225 1.93e-49 171
Msa1281040 MtrunA17_Chr6g0481091 42.328 189 95 4 17 203 8 184 3.63e-49 166
Msa1281040 MtrunA17_Chr4g0017921 50.000 164 63 4 17 176 10 158 7.85e-49 169
Msa1281040 MtrunA17_Chr1g0200561 45.977 174 78 4 4 174 8 168 1.56e-48 168
Msa1281040 MtrunA17_Chr3g0109821 45.596 193 81 6 17 206 8 179 1.95e-48 174
Msa1281040 MtrunA17_Chr8g0346001 46.988 166 77 4 17 176 17 177 7.14e-48 168
Msa1281040 MtrunA17_Chr7g0214071 47.253 182 81 4 2 182 1 168 8.66e-48 163
Msa1281040 MtrunA17_Chr1g0147421 47.159 176 80 4 1 175 14 177 1.41e-47 166
Msa1281040 MtrunA17_Chr2g0309331 46.012 163 73 3 17 176 12 162 1.96e-47 165
Msa1281040 MtrunA17_Chr5g0428991 50.307 163 68 4 18 178 28 179 2.40e-47 171
Msa1281040 MtrunA17_Chr5g0433781 46.584 161 73 3 17 175 8 157 7.05e-47 169
Msa1281040 MtrunA17_Chr5g0400461 46.707 167 66 4 17 174 8 160 1.34e-46 162
Msa1281040 MtrunA17_Chr1g0183741 36.910 233 122 4 17 246 12 222 9.94e-46 158
Msa1281040 MtrunA17_Chr3g0128151 47.273 165 74 4 18 180 25 178 1.29e-45 165
Msa1281040 MtrunA17_Chr3g0130101 45.732 164 76 4 13 174 5 157 1.51e-45 160
Msa1281040 MtrunA17_Chr4g0054791 46.784 171 79 4 17 184 8 169 2.09e-45 159
Msa1281040 MtrunA17_Chr7g0217721 46.061 165 81 3 18 176 22 184 4.45e-45 159
Msa1281040 MtrunA17_Chr2g0312321 36.027 297 146 12 11 284 7 282 1.04e-44 157
Msa1281040 MtrunA17_Chr3g0144271 34.304 309 119 8 1 234 14 313 1.14e-44 159
Msa1281040 MtrunA17_Chr8g0364791 43.827 162 78 4 15 174 6 156 1.21e-44 160
Msa1281040 MtrunA17_Chr1g0201021 47.024 168 72 5 13 175 15 170 3.66e-44 161
Msa1281040 MtrunA17_Chr3g0128111 43.636 165 80 4 18 180 45 198 3.68e-44 153
Msa1281040 MtrunA17_Chr7g0217711 51.562 128 60 1 18 145 22 147 8.75e-43 147
Msa1281040 MtrunA17_Chr7g0261411 40.964 166 85 1 7 172 2 154 1.21e-42 150
Msa1281040 MtrunA17_Chr8g0384201 37.674 215 98 6 15 205 6 208 4.32e-42 154
Msa1281040 MtrunA17_Chr1g0197361 44.311 167 72 5 17 177 10 161 5.56e-42 155
Msa1281040 MtrunA17_Chr8g0385991 43.114 167 85 3 5 171 8 164 1.01e-41 146
Msa1281040 MtrunA17_Chr1g0197351 42.857 168 81 4 15 176 42 200 3.16e-41 151
Msa1281040 MtrunA17_Chr3g0092671 40.860 186 93 7 17 199 7 178 3.88e-40 149
Msa1281040 MtrunA17_Chr3g0131911 42.222 180 93 4 5 182 8 178 9.45e-38 136
Msa1281040 MtrunA17_Chr8g0345671 49.254 134 64 3 18 148 14 146 1.05e-36 137
Msa1281040 MtrunA17_Chr4g0026141 35.023 217 124 6 11 222 1 205 1.26e-36 134
Msa1281040 MtrunA17_Chr7g0266701 30.400 250 154 9 15 254 4 243 3.07e-35 130
Msa1281040 MtrunA17_Chr2g0321631 40.000 165 80 6 17 172 6 160 1.60e-32 122
Msa1281040 MtrunA17_Chr8g0345691 47.244 127 63 3 18 141 15 140 3.23e-32 125
Msa1281040 MtrunA17_Chr8g0345711 40.146 137 78 3 18 151 15 150 2.05e-29 112
Msa1281040 MtrunA17_Chr3g0113001 43.200 125 63 2 60 184 10 126 2.14e-29 115
Msa1281040 MtrunA17_Chr4g0050701 37.342 158 88 2 17 174 13 159 1.11e-28 110
Msa1281040 MtrunA17_Chr8g0345731 41.844 141 76 5 15 149 23 163 4.00e-27 106
Msa1281040 MtrunA17_Chr8g0345721 35.976 164 72 3 18 149 38 200 6.36e-26 103
Msa1281040 MtrunA17_Chr2g0321741 43.925 107 57 2 35 140 12 116 6.97e-26 107
Msa1281040 MtrunA17_Chr8g0345741 41.176 119 66 3 26 141 2 119 1.57e-23 95.9
Msa1281040 MtrunA17_Chr8g0345701 36.879 141 69 5 18 141 10 147 1.03e-20 88.6
Msa1281040 MtrunA17_Chr8g0384351 32.738 168 82 6 17 184 12 148 1.03e-19 86.3
Msa1281040 MtrunA17_Chr3g0113031 40.566 106 52 3 78 181 3 99 2.17e-19 87.4
Msa1281040 MtrunA17_Chr7g0243371 45.455 77 42 0 68 144 17 93 3.13e-19 82.8
Msa1281040 MtrunA17_Chr3g0130321 31.481 162 96 5 17 173 9 160 1.90e-17 80.5
Msa1281040 MtrunA17_Chr7g0251651 28.313 166 102 5 18 181 21 171 3.70e-16 76.3
Msa1281040 MtrunA17_Chr7g0251671 31.818 132 82 5 18 146 13 139 1.33e-15 73.9
Msa1281040 MtrunA17_Chr7g0251661 31.884 138 87 5 13 147 7 140 3.19e-15 72.8
Msa1281040 MtrunA17_Chr1g0194791 60.417 48 18 1 17 63 48 95 2.52e-13 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1281040 AT1G26870.1 61.091 275 88 5 2 264 1 268 4.67e-109 327
Msa1281040 AT5G39820.1 67.805 205 53 4 1 192 6 210 4.21e-99 298
Msa1281040 AT2G43000.1 59.116 181 56 4 1 181 10 172 1.29e-72 228
Msa1281040 AT3G12910.1 56.897 174 68 4 8 175 14 186 4.12e-61 200
Msa1281040 AT2G02450.1 47.573 206 84 5 14 219 50 231 4.42e-60 199
Msa1281040 AT2G02450.2 47.573 206 84 5 14 219 50 231 6.65e-60 200
Msa1281040 AT3G15510.1 42.731 227 103 5 19 240 21 225 1.54e-58 195
Msa1281040 AT1G69490.1 45.813 203 103 4 17 219 11 206 3.70e-58 191
Msa1281040 AT3G04070.2 53.529 170 64 3 17 178 12 174 6.46e-58 192
Msa1281040 AT1G61110.1 53.143 175 71 4 17 183 18 189 2.29e-57 191
Msa1281040 AT3G04070.1 51.397 179 70 3 17 178 12 190 4.71e-57 191
Msa1281040 AT1G76420.1 40.377 265 141 4 2 264 9 258 2.75e-55 186
Msa1281040 AT5G63790.1 45.098 204 94 5 13 215 47 233 3.47e-55 184
Msa1281040 AT5G63790.2 45.098 204 94 5 13 215 57 243 4.86e-55 184
Msa1281040 AT1G01720.1 52.410 166 71 3 17 182 9 166 5.25e-55 183
Msa1281040 AT5G61430.1 36.486 296 142 6 2 286 1 261 1.14e-54 184
Msa1281040 AT4G27410.2 50.595 168 72 3 17 184 16 172 2.95e-54 182
Msa1281040 AT2G17040.1 50.286 175 70 4 12 185 3 161 4.08e-54 181
Msa1281040 AT5G08790.1 51.534 163 71 4 13 174 4 159 2.38e-53 179
Msa1281040 AT5G07680.2 43.868 212 100 3 17 218 5 207 4.41e-53 179
Msa1281040 AT1G12260.2 48.810 168 70 4 17 181 9 163 5.01e-53 180
Msa1281040 AT4G36160.2 47.701 174 75 4 17 187 16 176 5.03e-53 181
Msa1281040 AT1G12260.1 48.810 168 70 4 17 181 9 163 5.89e-53 181
Msa1281040 AT5G07680.1 43.868 212 100 3 17 218 19 221 6.00e-53 179
Msa1281040 AT4G36160.1 47.701 174 75 4 17 187 12 172 6.01e-53 181
Msa1281040 AT4G36160.3 47.701 174 75 4 17 187 12 172 6.01e-53 181
Msa1281040 AT1G52880.1 54.438 169 66 3 19 181 21 184 8.12e-53 179
Msa1281040 AT5G39610.1 44.554 202 89 4 17 206 22 212 8.94e-53 177
Msa1281040 AT1G77450.1 40.244 246 129 7 17 253 12 248 9.54e-53 176
Msa1281040 AT2G18060.3 47.701 174 74 5 17 187 11 170 3.54e-52 178
Msa1281040 AT2G18060.1 47.701 174 74 5 17 187 11 170 3.54e-52 178
Msa1281040 AT3G15500.1 51.190 168 67 4 17 182 16 170 5.33e-52 176
Msa1281040 AT2G24430.2 47.093 172 81 1 9 180 10 171 1.09e-51 176
Msa1281040 AT2G24430.1 47.093 172 81 1 9 180 10 171 1.09e-51 176
Msa1281040 AT1G52890.1 51.479 169 66 5 17 183 16 170 1.17e-51 176
Msa1281040 AT4G10350.1 36.934 287 137 9 17 293 11 263 1.96e-51 176
Msa1281040 AT1G62700.1 47.059 170 74 3 17 183 9 165 6.02e-51 176
Msa1281040 AT1G62700.2 47.059 170 74 3 17 183 9 165 6.02e-51 176
Msa1281040 AT3G17730.1 48.193 166 73 3 17 180 8 162 6.41e-51 171
Msa1281040 AT5G66300.1 44.240 217 98 7 17 225 14 215 1.81e-50 172
Msa1281040 AT5G18270.1 47.368 171 81 3 6 176 13 174 2.71e-50 172
Msa1281040 AT3G18400.1 48.235 170 76 3 11 180 1 158 3.45e-50 172
Msa1281040 AT5G62380.2 47.826 161 68 4 17 174 9 156 4.09e-50 172
Msa1281040 AT5G62380.1 47.826 161 68 4 17 174 9 156 4.09e-50 172
Msa1281040 AT3G04060.1 48.256 172 77 3 17 184 22 185 4.47e-50 172
Msa1281040 AT4G27410.3 45.946 185 72 4 17 184 16 189 6.50e-50 171
Msa1281040 AT1G33280.1 50.307 163 64 3 17 176 10 158 6.61e-50 171
Msa1281040 AT1G65910.1 49.693 163 69 3 15 175 6 157 7.10e-50 178
Msa1281040 AT5G18270.2 46.784 171 82 3 6 176 13 174 1.80e-49 170
Msa1281040 AT3G29035.1 47.120 191 86 6 8 195 16 194 2.59e-49 169
Msa1281040 AT3G03200.1 45.604 182 86 5 17 195 8 179 3.11e-49 173
Msa1281040 AT4G17980.1 47.500 160 75 2 17 174 8 160 5.22e-49 167
Msa1281040 AT4G17980.2 47.500 160 75 2 17 174 8 160 6.05e-49 167
Msa1281040 AT1G71930.2 38.168 262 129 9 11 263 5 242 1.26e-48 168
Msa1281040 AT1G71930.1 38.168 262 129 9 11 263 5 242 1.26e-48 168
Msa1281040 AT3G15170.1 47.337 169 82 2 12 180 17 178 1.44e-48 167
Msa1281040 AT5G17260.1 46.199 171 80 4 17 185 8 168 1.59e-48 171
Msa1281040 AT5G53950.1 45.930 172 86 2 13 184 15 179 1.69e-48 169
Msa1281040 AT3G61910.1 38.961 231 122 7 17 233 13 238 3.50e-48 167
Msa1281040 AT2G46770.1 46.108 167 81 3 17 176 18 182 1.65e-47 166
Msa1281040 AT3G10500.1 46.667 165 75 4 15 177 9 162 3.47e-46 167
Msa1281040 AT1G32510.1 36.567 268 141 9 17 266 8 264 7.45e-46 159
Msa1281040 AT4G35580.2 48.824 170 73 5 7 174 2 159 1.20e-45 165
Msa1281040 AT4G35580.1 48.824 170 73 5 7 174 2 159 1.22e-45 164
Msa1281040 AT4G35580.3 48.824 170 73 5 7 174 2 159 1.34e-45 165
Msa1281040 AT1G32770.1 45.122 164 84 3 17 176 18 179 1.42e-45 160
Msa1281040 AT5G13180.1 47.399 173 74 3 5 177 8 163 1.47e-45 157
Msa1281040 AT1G33060.1 46.951 164 74 3 13 174 22 174 1.49e-45 166
Msa1281040 AT1G54330.1 46.707 167 73 3 17 181 8 160 1.55e-45 159
Msa1281040 AT1G34180.3 45.143 175 83 3 5 177 6 169 1.61e-45 163
Msa1281040 AT1G33060.2 46.951 164 74 3 13 174 22 174 1.66e-45 166
Msa1281040 AT1G79580.3 46.626 163 71 4 17 176 19 168 2.26e-45 160
Msa1281040 AT1G79580.5 46.626 163 71 4 17 176 19 168 2.26e-45 160
Msa1281040 AT1G79580.4 46.626 163 71 4 17 176 19 168 2.26e-45 160
Msa1281040 AT1G79580.2 46.626 163 71 4 17 176 19 168 2.26e-45 160
Msa1281040 AT1G79580.1 46.626 163 71 4 17 176 19 168 2.26e-45 160
Msa1281040 AT5G46590.2 54.688 128 55 2 17 142 8 134 5.08e-45 157
Msa1281040 AT5G46590.1 54.688 128 55 2 17 142 8 134 8.64e-45 157
Msa1281040 AT1G34180.1 45.143 175 83 3 5 177 6 169 1.07e-44 163
Msa1281040 AT1G56010.2 47.368 171 69 5 11 174 15 171 1.62e-44 157
Msa1281040 AT3G10490.1 43.023 172 86 4 7 176 19 180 1.84e-44 154
Msa1281040 AT1G34190.1 44.571 175 82 4 6 177 7 169 4.34e-44 161
Msa1281040 AT3G12977.1 43.333 180 91 4 1 179 3 172 5.92e-44 154
Msa1281040 AT5G04410.1 45.055 182 83 7 15 193 9 176 1.27e-43 160
Msa1281040 AT3G10480.1 44.578 166 76 4 15 176 27 180 1.91e-43 157
Msa1281040 AT3G10480.2 44.048 168 73 4 15 176 27 179 2.33e-43 157
Msa1281040 AT1G34180.4 41.711 187 84 3 5 177 6 181 4.01e-43 157
Msa1281040 AT3G10490.2 44.512 164 79 4 15 176 27 180 7.21e-43 155
Msa1281040 AT5G24590.2 46.199 171 79 4 9 176 6 166 8.59e-43 155
Msa1281040 AT1G34180.2 41.711 187 84 3 5 177 6 181 2.02e-42 157
Msa1281040 AT5G09330.5 41.975 162 81 4 15 174 6 156 3.33e-41 152
Msa1281040 AT5G09330.2 41.975 162 81 4 15 174 6 156 3.33e-41 152
Msa1281040 AT5G09330.4 41.975 162 81 4 15 174 6 156 3.33e-41 152
Msa1281040 AT5G09330.3 41.975 162 81 4 15 174 6 156 3.33e-41 152
Msa1281040 AT5G09330.1 41.975 162 81 4 15 174 6 156 3.33e-41 152
Msa1281040 AT5G64060.1 32.967 273 145 11 15 273 6 254 4.14e-41 149
Msa1281040 AT4G28530.1 39.674 184 82 3 7 174 2 172 1.48e-40 147
Msa1281040 AT3G49530.2 42.767 159 79 3 18 174 16 164 2.15e-40 148
Msa1281040 AT3G49530.1 42.767 159 79 3 18 174 16 164 7.09e-40 148
Msa1281040 AT2G33480.1 42.458 179 88 5 2 179 1 165 1.18e-39 142
Msa1281040 AT5G22290.1 39.535 172 83 4 15 182 21 175 5.28e-39 143
Msa1281040 AT2G33480.2 41.899 179 87 5 2 179 1 163 2.11e-38 139
Msa1281040 AT3G10480.3 38.191 199 74 5 15 176 27 213 6.27e-38 144
Msa1281040 AT3G44290.2 46.825 126 64 2 16 140 15 138 1.08e-37 136
Msa1281040 AT2G27300.1 44.531 128 68 2 14 140 13 138 2.27e-37 138
Msa1281040 AT3G44290.1 46.825 126 64 2 16 140 15 138 3.65e-37 138
Msa1281040 AT5G04395.1 39.024 164 84 3 7 156 20 181 6.12e-35 127
Msa1281040 AT5G61430.2 33.476 233 111 5 63 286 1 198 1.13e-34 129
Msa1281040 AT1G32870.1 50.769 130 58 3 15 142 10 135 4.55e-33 130
Msa1281040 AT1G32870.2 50.769 130 58 3 15 142 10 135 4.70e-33 130
Msa1281040 AT2G43000.2 58.095 105 32 3 77 181 2 94 5.00e-33 123
Msa1281040 AT1G32870.3 50.769 130 58 3 15 142 46 171 8.84e-33 129
Msa1281040 AT4G10350.2 33.473 239 118 8 62 293 12 216 1.33e-30 119
Msa1281040 AT5G22380.1 35.052 194 105 8 18 204 8 187 1.33e-30 117
Msa1281040 AT5G64530.1 39.264 163 82 3 17 174 5 155 5.39e-30 114
Msa1281040 AT3G44350.2 35.429 175 95 5 11 178 1 164 1.86e-29 114
Msa1281040 AT3G12977.2 45.833 120 55 3 60 179 10 119 5.45e-29 113
Msa1281040 AT1G56010.1 49.138 116 43 3 63 174 1 104 8.80e-29 113
Msa1281040 AT5G64530.2 43.307 127 60 2 17 143 5 119 1.13e-28 110
Msa1281040 AT4G01550.1 43.284 134 72 3 16 145 5 138 2.24e-28 116
Msa1281040 AT3G44350.1 38.000 150 83 4 11 153 1 147 6.31e-28 108
Msa1281040 AT4G01520.1 34.737 190 102 7 18 202 7 179 7.19e-25 103
Msa1281040 AT4G01540.3 41.481 135 74 4 16 145 5 139 1.69e-24 104
Msa1281040 AT4G01540.4 40.411 146 79 5 16 156 5 147 2.47e-24 103
Msa1281040 AT4G01540.1 41.481 135 74 4 16 145 5 139 3.71e-24 104
Msa1281040 AT4G01540.2 40.411 146 79 5 16 156 5 147 4.32e-24 103
Msa1281040 AT1G02250.1 34.673 199 113 8 18 211 6 192 3.85e-23 100
Msa1281040 AT4G28530.2 38.235 136 68 2 7 126 2 137 2.14e-22 97.1
Msa1281040 AT1G02230.1 38.806 134 74 5 18 146 6 136 1.05e-21 95.9
Msa1281040 AT3G04420.2 38.583 127 72 3 18 140 6 130 5.89e-21 92.4
Msa1281040 AT2G33480.3 42.056 107 51 3 68 174 8 103 6.19e-21 90.9
Msa1281040 AT2G18060.2 47.368 95 36 4 93 187 2 82 9.99e-21 91.7
Msa1281040 AT3G04420.1 38.583 127 72 3 18 140 6 130 2.34e-20 91.7
Msa1281040 AT1G01010.1 28.685 251 150 8 18 256 6 239 3.10e-18 86.7
Msa1281040 AT1G02220.1 37.795 127 70 4 18 140 6 127 7.93e-17 82.0
Msa1281040 AT5G50820.1 36.641 131 71 5 17 144 19 140 8.46e-16 75.9
Msa1281040 AT3G04430.1 36.842 133 70 5 21 141 6 136 2.62e-15 74.3
Msa1281040 AT5G14000.2 31.579 133 85 3 18 148 18 146 1.11e-14 71.6
Msa1281040 AT5G14000.1 27.108 166 103 4 18 181 18 167 1.42e-14 72.4
Msa1281040 AT3G56530.1 30.189 159 95 5 17 172 54 199 2.93e-14 73.6
Msa1281040 AT3G10490.4 38.202 89 45 3 88 176 2 80 8.09e-14 72.4
Msa1281040 AT3G10490.3 38.202 89 45 3 88 176 2 80 8.09e-14 72.4
Msa1281040 AT5G22290.2 36.957 92 38 3 94 182 2 76 4.52e-12 65.9

Find 95 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAATCAATGGATCAATAAT+TGG 0.177383 8_3:-20209087 None:intergenic
TGAAATTGGTAACCGGTATA+AGG 0.232151 8_3:-20209115 None:intergenic
TTAGGAATGTTAGCCATTAA+TGG 0.250578 8_3:-20209306 None:intergenic
GTCTTGTCTACATATTTCTT+TGG 0.251750 8_3:-20208158 None:intergenic
CCAGCTCTTGTTACCCTATT+AGG 0.256540 8_3:-20207963 None:intergenic
TCATGTTTGAGGAACAAAAT+TGG 0.264318 8_3:-20208933 None:intergenic
ATTATAAGTTAGAACATCTA+AGG 0.265354 8_3:-20209061 None:intergenic
CTTGAAGAGGTTATGCTTCC+AGG 0.267006 8_3:+20206926 Msa1281040:CDS
AGATCTTGATCATTTGAAAT+TGG 0.267969 8_3:-20209129 None:intergenic
TTACAAGACCATTACAATAA+TGG 0.289925 8_3:+20209279 Msa1281040:CDS
CAATAATGGGTATCCATTAA+TGG 0.291946 8_3:+20209293 Msa1281040:CDS
TACAAGACCATTACAATAAT+GGG 0.299937 8_3:+20209280 Msa1281040:CDS
TTCCTGTACTTTCTGTCTCT+TGG 0.313082 8_3:-20207930 None:intergenic
GGAACAGTGCAAGACCTAAT+AGG 0.314506 8_3:+20207949 Msa1281040:CDS
GGGTAACAAGAGCTGGGTTT+TGG 0.314918 8_3:+20207970 Msa1281040:CDS
TATTCAACTTGTAGGAATCT+TGG 0.319905 8_3:+20208788 Msa1281040:intron
AGGTTATGCTTCCAGGGTTT+AGG 0.326370 8_3:+20206933 Msa1281040:CDS
GGAAGTCATCAAGTCTTGTT+TGG 0.332787 8_3:+20209424 Msa1281040:CDS
TTCAGTGTGCCTCTCAATAT+TGG 0.343215 8_3:+20209393 Msa1281040:CDS
ACACGAGGCACGTTCGCATT+AGG 0.344052 8_3:-20209324 None:intergenic
CCAACTGATGAAGAACTTGT+TGG 0.382953 8_3:+20206962 Msa1281040:CDS
GAACCCTCTGAGGAATAAAT+AGG 0.385421 8_3:-20208014 None:intergenic
GAAATTGGTAACCGGTATAA+GGG 0.389296 8_3:-20209114 None:intergenic
TGTATAGAGTTGGCAAGTAC+AGG 0.404014 8_3:+20207882 Msa1281040:intron
CTTTGTTAACATCATGTTTG+AGG 0.406276 8_3:-20208944 None:intergenic
TCAGAGGGTTCTAAGTGTAT+TGG 0.407108 8_3:+20208026 Msa1281040:CDS
AAGAGGTTAAGTGTTGTGTT+AGG 0.408400 8_3:-20209017 None:intergenic
ATTCAACTTGTAGGAATCTT+GGG 0.422352 8_3:+20208789 Msa1281040:intron
ATGGATACCCATTATTGTAA+TGG 0.426120 8_3:-20209287 None:intergenic
TACTACCAAGTGTTATACTT+AGG 0.432517 8_3:+20209488 Msa1281040:CDS
GATCATTTGAAATTGGTAAC+CGG 0.434751 8_3:-20209122 None:intergenic
ACTACCAAGTGTTATACTTA+GGG 0.437461 8_3:+20209489 Msa1281040:CDS
TCTACCTTTGTAGAAAACTA+AGG 0.437881 8_3:-20208060 None:intergenic
GAACAGTGCAAGACCTAATA+GGG 0.447391 8_3:+20207950 Msa1281040:CDS
ATCTTGTAACAAAACTTCAA+TGG 0.456838 8_3:+20209194 Msa1281040:CDS
GAAGTCATCAAGTCTTGTTT+GGG 0.460153 8_3:+20209425 Msa1281040:CDS
GAGGTTGATGTTTCAAGTAA+AGG 0.463138 8_3:-20208880 None:intergenic
CCTAATAGGGTAACAAGAGC+TGG 0.463143 8_3:+20207963 Msa1281040:CDS
TATAAGGGTTTGTAAATCAA+TGG 0.465297 8_3:-20209099 None:intergenic
ATATGTAGACAAGACCATTC+CGG 0.469723 8_3:+20208166 Msa1281040:CDS
CCAAAGGAGTCAAAACTGAT+TGG 0.471412 8_3:+20208087 Msa1281040:CDS
TAGGATATGGAAGAGAGAAA+TGG 0.474701 8_3:+20206893 None:intergenic
ATATTTATAAATTTGATCCA+TGG 0.478110 8_3:+20207047 Msa1281040:CDS
AAAGAGCTCTCTCTCACTCA+TGG 0.486372 8_3:+20208851 Msa1281040:CDS
TATTTATAAATTTGATCCAT+GGG 0.487821 8_3:+20207048 Msa1281040:CDS
CCAACAAGTTCTTCATCAGT+TGG 0.490455 8_3:-20206962 None:intergenic
ATCATTTGTTAGAACATTGG+AGG 0.492381 8_3:-20208899 None:intergenic
ATATTGAGAGGCACACTGAA+TGG 0.495510 8_3:-20209390 None:intergenic
TGCATCATTTGTTAGAACAT+TGG 0.496772 8_3:-20208902 None:intergenic
TTTACTTACATTGGCCGGAA+TGG 0.497789 8_3:-20208180 None:intergenic
TTGGATACGGTTCGACCCGT+TGG 0.503009 8_3:+20209363 Msa1281040:CDS
TGATTTACAAACCCTTATAC+CGG 0.505584 8_3:+20209103 Msa1281040:CDS
TATTGAGAGGCACACTGAAT+GGG 0.507464 8_3:-20209389 None:intergenic
GTCTTACTTGGTAGATCCCA+TGG 0.514805 8_3:-20207064 None:intergenic
AGGAATCTTGGGCAATATGC+AGG 0.518840 8_3:+20208800 Msa1281040:intron
ACACTGAATGGGAATCCAAC+GGG 0.518941 8_3:-20209378 None:intergenic
AGCTCTTTGAGCTGTAGCAT+TGG 0.520084 8_3:-20208836 None:intergenic
TTGAAGAGGTTATGCTTCCA+GGG 0.523265 8_3:+20206927 Msa1281040:CDS
TGTTGATGATCAACAAGAGT+TGG 0.526593 8_3:+20209344 Msa1281040:CDS
AGTGTTGTGTTAGGTTATTG+TGG 0.533214 8_3:-20209008 None:intergenic
CTAGAGTGACTCGCAAAGCT+AGG 0.543852 8_3:-20208970 None:intergenic
TTGAGGAACAAAATTGGTTG+TGG 0.548581 8_3:-20208927 None:intergenic
AGACCTATTTATTCCTCAGA+GGG 0.557263 8_3:+20208011 Msa1281040:CDS
CAAGATCTTAACCTTAGCAC+TGG 0.557408 8_3:+20209144 Msa1281040:CDS
GTTGATGTTTCAAGTAAAGG+TGG 0.562150 8_3:-20208877 None:intergenic
AAGTGTAGTACTACTAGAAG+AGG 0.565912 8_3:-20209034 None:intergenic
GTATAGAGTTGGCAAGTACA+GGG 0.573043 8_3:+20207883 Msa1281040:intron
AAGAGCTCTCTCTCACTCAT+GGG 0.573676 8_3:+20208852 Msa1281040:CDS
TTGTTACAAGATGTTTCAAG+AGG 0.576354 8_3:-20209183 None:intergenic
GGGTTCATCAGAAGTACAAG+AGG 0.581707 8_3:-20209454 None:intergenic
CAAGTACAGGGGAGAAAGAG+TGG 0.591955 8_3:+20207895 Msa1281040:CDS
TGATCAACAAGAGTTGGATA+CGG 0.594638 8_3:+20209350 Msa1281040:CDS
GTAACAACTTCAAACTACAT+TGG 0.595345 8_3:+20209252 Msa1281040:CDS
TTATAAGTTAGAACATCTAA+GGG 0.597428 8_3:-20209060 None:intergenic
CTAATAGGGTAACAAGAGCT+GGG 0.601926 8_3:+20207964 Msa1281040:CDS
CAGACCTATTTATTCCTCAG+AGG 0.608250 8_3:+20208010 Msa1281040:CDS
TTGATGTTTCAAGTAAAGGT+GGG 0.610295 8_3:-20208876 None:intergenic
CTCTCAATATTGGTGATGCA+TGG 0.610941 8_3:+20209403 Msa1281040:CDS
GTCCAAGAGACAGAAAGTAC+AGG 0.615144 8_3:+20207928 Msa1281040:CDS
AGAATACTAAGCCAGTGCTA+AGG 0.618095 8_3:-20209155 None:intergenic
CACACTGAATGGGAATCCAA+CGG 0.628241 8_3:-20209379 None:intergenic
GTTGGATGAAACCTAAACCC+TGG 0.628808 8_3:-20206944 None:intergenic
CATGCATCACCAATATTGAG+AGG 0.634336 8_3:-20209402 None:intergenic
GATGACGAATCTATGAGAGA+AGG 0.638053 8_3:-20208131 None:intergenic
AGATGACATACCTAATAGCA+AGG 0.639338 8_3:-20209226 None:intergenic
TTGATGAGCTCAATAGCAAG+AGG 0.641698 8_3:-20207016 None:intergenic
TGGTTGTGAGAAACTTGAAG+AGG 0.645223 8_3:+20206913 Msa1281040:CDS
CTTGGTAGTAGAATAACTAG+AGG 0.660558 8_3:-20209475 None:intergenic
TACAAAGGTAGAGCTGCCAA+AGG 0.667663 8_3:+20208071 Msa1281040:CDS
TAAACCCTAAGTATAACACT+TGG 0.675221 8_3:-20209493 None:intergenic
TGATGAGCTCAATAGCAAGA+GGG 0.682356 8_3:-20207015 None:intergenic
TATAGAGTTGGCAAGTACAG+GGG 0.692122 8_3:+20207884 Msa1281040:intron
TTGGTAGTAGAATAACTAGA+GGG 0.705649 8_3:-20209474 None:intergenic
AATACACTTAGAACCCTCTG+AGG 0.742862 8_3:-20208024 None:intergenic
TCTTGTTGATCATCAACACG+AGG 0.747637 8_3:-20209339 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAGATATATAAGAAATTA+GGG + chr8_3:20208590-20208609 Msa1281040:intron 10.0%
!! ATATTTATAAATTTGATCCA+TGG + chr8_3:20207047-20207066 Msa1281040:CDS 15.0%
!! TATTTATAAATTTGATCCAT+GGG + chr8_3:20207048-20207067 Msa1281040:CDS 15.0%
!! TAAAAAGTAAAATGATAAAG+AGG - chr8_3:20207173-20207192 None:intergenic 15.0%
!!! TGTGAATTTATTTTTTTGAA+TGG - chr8_3:20207572-20207591 None:intergenic 15.0%
!! TACTAGAAAAAGTAAAATTA+GGG + chr8_3:20207639-20207658 Msa1281040:intron 15.0%
!! TAAAAAAACAAAAATTAGTG+AGG - chr8_3:20207768-20207787 None:intergenic 15.0%
!! TTCAAACTAAATATAGATTT+GGG - chr8_3:20208213-20208232 None:intergenic 15.0%
!!! ACATATACTTTTTTTTAACA+AGG - chr8_3:20208293-20208312 None:intergenic 15.0%
!! GAATAGATATATAAGAAATT+AGG + chr8_3:20208589-20208608 Msa1281040:intron 15.0%
!!! GTAATTATTTTTTTAACAAG+TGG - chr8_3:20208707-20208726 None:intergenic 15.0%
!! CTTATTTACATAAACTCTTT+AGG + chr8_3:20207374-20207393 Msa1281040:intron 20.0%
!! CTACTAGAAAAAGTAAAATT+AGG + chr8_3:20207638-20207657 Msa1281040:intron 20.0%
!! GTTCAAACTAAATATAGATT+TGG - chr8_3:20208214-20208233 None:intergenic 20.0%
!!! TATATTTAGTTTGAACTTGT+TGG + chr8_3:20208218-20208237 Msa1281040:intron 20.0%
!!! TTTTATAGATCTTGTTAGAA+TGG + chr8_3:20208246-20208265 Msa1281040:intron 20.0%
!! TTATAAGTTAGAACATCTAA+GGG - chr8_3:20209063-20209082 None:intergenic 20.0%
!! ATTATAAGTTAGAACATCTA+AGG - chr8_3:20209064-20209083 None:intergenic 20.0%
!! TAAATCAATGGATCAATAAT+TGG - chr8_3:20209090-20209109 None:intergenic 20.0%
! CAAAATGATAAACACATCTA+GGG - chr8_3:20207120-20207139 None:intergenic 25.0%
! TCAAAATGATAAACACATCT+AGG - chr8_3:20207121-20207140 None:intergenic 25.0%
! TATATGTAAGTTACACATCT+AGG - chr8_3:20207239-20207258 None:intergenic 25.0%
! TAGAAAAAGTAAAATTAGGG+AGG + chr8_3:20207642-20207661 Msa1281040:intron 25.0%
! AGAAAAAGTAAAATTAGGGA+GGG + chr8_3:20207643-20207662 Msa1281040:intron 25.0%
!! TGATATTTTGTGTATAGAGT+TGG + chr8_3:20207872-20207891 Msa1281040:intron 25.0%
!!! AAATCCTTAGTTTTCTACAA+AGG + chr8_3:20208056-20208075 Msa1281040:CDS 25.0%
!! GGAAGTAATTTTACTTACAT+TGG - chr8_3:20208192-20208211 None:intergenic 25.0%
! CATTTGACAAATAATCAAGT+AGG + chr8_3:20208356-20208375 Msa1281040:intron 25.0%
! ATGAGTAATCAGTAAAGTTA+TGG + chr8_3:20208391-20208410 Msa1281040:intron 25.0%
! ATCAGTAAAGTTATGGTATT+TGG + chr8_3:20208398-20208417 Msa1281040:intron 25.0%
! GTTATGGTATTTGGATTATT+TGG + chr8_3:20208407-20208426 Msa1281040:intron 25.0%
!!! ATCACATCACTCTATTTTAA+GGG - chr8_3:20208511-20208530 None:intergenic 25.0%
!! TATCACATCACTCTATTTTA+AGG - chr8_3:20208512-20208531 None:intergenic 25.0%
! TTAAATGCTATTCAACTTGT+AGG + chr8_3:20208780-20208799 Msa1281040:intron 25.0%
! TATAAGGGTTTGTAAATCAA+TGG - chr8_3:20209102-20209121 None:intergenic 25.0%
!! AGATCTTGATCATTTGAAAT+TGG - chr8_3:20209132-20209151 None:intergenic 25.0%
! ATCTTGTAACAAAACTTCAA+TGG + chr8_3:20209194-20209213 Msa1281040:CDS 25.0%
! TTACAAGACCATTACAATAA+TGG + chr8_3:20209279-20209298 Msa1281040:CDS 25.0%
! TACAAGACCATTACAATAAT+GGG + chr8_3:20209280-20209299 Msa1281040:CDS 25.0%
! GTTGCTGAATCTTTTTCTTT+AGG - chr8_3:20206994-20207013 None:intergenic 30.0%
ATGATAAAGAGGTCAAATAC+TGG - chr8_3:20207162-20207181 None:intergenic 30.0%
ACAATTTCTGACATGTACAT+AGG + chr8_3:20207341-20207360 Msa1281040:intron 30.0%
!! ACTTTTTCTAGTAGTGTGTT+CGG - chr8_3:20207632-20207651 None:intergenic 30.0%
TAGTGAGGAAAATTTAGTGA+GGG - chr8_3:20207753-20207772 None:intergenic 30.0%
TTAGTGAGGAAAATTTAGTG+AGG - chr8_3:20207754-20207773 None:intergenic 30.0%
TCTACCTTTGTAGAAAACTA+AGG - chr8_3:20208063-20208082 None:intergenic 30.0%
GTCTTGTCTACATATTTCTT+TGG - chr8_3:20208161-20208180 None:intergenic 30.0%
! GTAATTTTACTTACATTGGC+CGG - chr8_3:20208188-20208207 None:intergenic 30.0%
TAACCTAAAATGCACTTAGT+CGG + chr8_3:20208432-20208451 Msa1281040:intron 30.0%
TCATTTGACCAGAAAACAAT+CGG - chr8_3:20208662-20208681 None:intergenic 30.0%
!!! TTCATTTTGAAGTGTTTGAC+TGG + chr8_3:20208751-20208770 Msa1281040:intron 30.0%
TATTCAACTTGTAGGAATCT+TGG + chr8_3:20208788-20208807 Msa1281040:intron 30.0%
ATTCAACTTGTAGGAATCTT+GGG + chr8_3:20208789-20208808 Msa1281040:intron 30.0%
! TTGATGTTTCAAGTAAAGGT+GGG - chr8_3:20208879-20208898 None:intergenic 30.0%
! ATCATTTGTTAGAACATTGG+AGG - chr8_3:20208902-20208921 None:intergenic 30.0%
! TGCATCATTTGTTAGAACAT+TGG - chr8_3:20208905-20208924 None:intergenic 30.0%
TCATGTTTGAGGAACAAAAT+TGG - chr8_3:20208936-20208955 None:intergenic 30.0%
CTTTGTTAACATCATGTTTG+AGG - chr8_3:20208947-20208966 None:intergenic 30.0%
TGATTTACAAACCCTTATAC+CGG + chr8_3:20209103-20209122 Msa1281040:CDS 30.0%
! GATCATTTGAAATTGGTAAC+CGG - chr8_3:20209125-20209144 None:intergenic 30.0%
TTGTTACAAGATGTTTCAAG+AGG - chr8_3:20209186-20209205 None:intergenic 30.0%
!!! GATTTTTCTTCCTTGCTATT+AGG + chr8_3:20209216-20209235 Msa1281040:CDS 30.0%
GTAACAACTTCAAACTACAT+TGG + chr8_3:20209252-20209271 Msa1281040:CDS 30.0%
ATGGATACCCATTATTGTAA+TGG - chr8_3:20209290-20209309 None:intergenic 30.0%
!! CAATAATGGGTATCCATTAA+TGG + chr8_3:20209293-20209312 Msa1281040:CDS 30.0%
TTAGGAATGTTAGCCATTAA+TGG - chr8_3:20209309-20209328 None:intergenic 30.0%
! TTGGTAGTAGAATAACTAGA+GGG - chr8_3:20209477-20209496 None:intergenic 30.0%
GCACTATTATGAGTCTTACT+TGG - chr8_3:20207079-20207098 None:intergenic 35.0%
AATATAAGGTTCGCTTGATG+TGG - chr8_3:20207211-20207230 None:intergenic 35.0%
ACATCTAGGTAGGGAATATA+AGG - chr8_3:20207225-20207244 None:intergenic 35.0%
GTAAGTTACACATCTAGGTA+GGG - chr8_3:20207234-20207253 None:intergenic 35.0%
TGTAAGTTACACATCTAGGT+AGG - chr8_3:20207235-20207254 None:intergenic 35.0%
GAAATCTCTCACAAATTCCT+TGG + chr8_3:20207686-20207705 Msa1281040:intron 35.0%
TTGGTCGCAAAATTTAGTGA+GGG + chr8_3:20207705-20207724 Msa1281040:intron 35.0%
TAGTAGTGACATCGTACTAT+AGG + chr8_3:20207786-20207805 Msa1281040:intron 35.0%
AGACCTATTTATTCCTCAGA+GGG + chr8_3:20208011-20208030 Msa1281040:CDS 35.0%
ATATGTAGACAAGACCATTC+CGG + chr8_3:20208166-20208185 Msa1281040:CDS 35.0%
! AATCCGACTAAGTGCATTTT+AGG - chr8_3:20208438-20208457 None:intergenic 35.0%
TGTGGTGCACACAAAAAATT+AGG - chr8_3:20208474-20208493 None:intergenic 35.0%
! AGAAAACAATCGGGTCATTT+TGG - chr8_3:20208652-20208671 None:intergenic 35.0%
! AAAATGACCCGATTGTTTTC+TGG + chr8_3:20208651-20208670 Msa1281040:intron 35.0%
CATTTGACCAGAAAACAATC+GGG - chr8_3:20208661-20208680 None:intergenic 35.0%
! GTTGATGTTTCAAGTAAAGG+TGG - chr8_3:20208880-20208899 None:intergenic 35.0%
!! GAGGTTGATGTTTCAAGTAA+AGG - chr8_3:20208883-20208902 None:intergenic 35.0%
TTGAGGAACAAAATTGGTTG+TGG - chr8_3:20208930-20208949 None:intergenic 35.0%
AGTGTTGTGTTAGGTTATTG+TGG - chr8_3:20209011-20209030 None:intergenic 35.0%
! AAGAGGTTAAGTGTTGTGTT+AGG - chr8_3:20209020-20209039 None:intergenic 35.0%
AAGTGTAGTACTACTAGAAG+AGG - chr8_3:20209037-20209056 None:intergenic 35.0%
! GAAATTGGTAACCGGTATAA+GGG - chr8_3:20209117-20209136 None:intergenic 35.0%
! TGAAATTGGTAACCGGTATA+AGG - chr8_3:20209118-20209137 None:intergenic 35.0%
AGATGACATACCTAATAGCA+AGG - chr8_3:20209229-20209248 None:intergenic 35.0%
!! TGTTGATGATCAACAAGAGT+TGG + chr8_3:20209344-20209363 Msa1281040:CDS 35.0%
TGATCAACAAGAGTTGGATA+CGG + chr8_3:20209350-20209369 Msa1281040:CDS 35.0%
!! GAAGTCATCAAGTCTTGTTT+GGG + chr8_3:20209425-20209444 Msa1281040:CDS 35.0%
! CTTGGTAGTAGAATAACTAG+AGG - chr8_3:20209478-20209497 None:intergenic 35.0%
TGGTTGTGAGAAACTTGAAG+AGG + chr8_3:20206913-20206932 Msa1281040:CDS 40.0%
TTGAAGAGGTTATGCTTCCA+GGG + chr8_3:20206927-20206946 Msa1281040:CDS 40.0%
CCAACAAGTTCTTCATCAGT+TGG - chr8_3:20206965-20206984 None:intergenic 40.0%
CCAACTGATGAAGAACTTGT+TGG + chr8_3:20206962-20206981 Msa1281040:CDS 40.0%
TGATGAGCTCAATAGCAAGA+GGG - chr8_3:20207018-20207037 None:intergenic 40.0%
TTGATGAGCTCAATAGCAAG+AGG - chr8_3:20207019-20207038 None:intergenic 40.0%
TTAGGGAGGGAAATTAGTGA+CGG + chr8_3:20207656-20207675 Msa1281040:intron 40.0%
! CTCACTAAATTTTGCGACCA+AGG - chr8_3:20207706-20207725 None:intergenic 40.0%
CTTGGTCGCAAAATTTAGTG+AGG + chr8_3:20207704-20207723 Msa1281040:intron 40.0%
TGTATAGAGTTGGCAAGTAC+AGG + chr8_3:20207882-20207901 Msa1281040:intron 40.0%
GTATAGAGTTGGCAAGTACA+GGG + chr8_3:20207883-20207902 Msa1281040:intron 40.0%
TATAGAGTTGGCAAGTACAG+GGG + chr8_3:20207884-20207903 Msa1281040:intron 40.0%
TTCCTGTACTTTCTGTCTCT+TGG - chr8_3:20207933-20207952 None:intergenic 40.0%
GAACAGTGCAAGACCTAATA+GGG + chr8_3:20207950-20207969 Msa1281040:CDS 40.0%
CTAATAGGGTAACAAGAGCT+GGG + chr8_3:20207964-20207983 Msa1281040:CDS 40.0%
CAGACCTATTTATTCCTCAG+AGG + chr8_3:20208010-20208029 Msa1281040:CDS 40.0%
! GAACCCTCTGAGGAATAAAT+AGG - chr8_3:20208017-20208036 None:intergenic 40.0%
AATACACTTAGAACCCTCTG+AGG - chr8_3:20208027-20208046 None:intergenic 40.0%
!! TCAGAGGGTTCTAAGTGTAT+TGG + chr8_3:20208026-20208045 Msa1281040:CDS 40.0%
!!! CCAATCAGTTTTGACTCCTT+TGG - chr8_3:20208090-20208109 None:intergenic 40.0%
CCAAAGGAGTCAAAACTGAT+TGG + chr8_3:20208087-20208106 Msa1281040:CDS 40.0%
GATGACGAATCTATGAGAGA+AGG - chr8_3:20208134-20208153 None:intergenic 40.0%
TTTACTTACATTGGCCGGAA+TGG - chr8_3:20208183-20208202 None:intergenic 40.0%
!!! TTTTTTGTGTGCACCACATG+TGG + chr8_3:20208476-20208495 Msa1281040:intron 40.0%
! TTTTTGTGTGCACCACATGT+GGG + chr8_3:20208477-20208496 Msa1281040:intron 40.0%
!! ACAATCGGGTCATTTTGGAT+CGG - chr8_3:20208647-20208666 None:intergenic 40.0%
CAAGATCTTAACCTTAGCAC+TGG + chr8_3:20209144-20209163 Msa1281040:CDS 40.0%
AGAATACTAAGCCAGTGCTA+AGG - chr8_3:20209158-20209177 None:intergenic 40.0%
TCTTGTTGATCATCAACACG+AGG - chr8_3:20209342-20209361 None:intergenic 40.0%
! TATTGAGAGGCACACTGAAT+GGG - chr8_3:20209392-20209411 None:intergenic 40.0%
! ATATTGAGAGGCACACTGAA+TGG - chr8_3:20209393-20209412 None:intergenic 40.0%
TTCAGTGTGCCTCTCAATAT+TGG + chr8_3:20209393-20209412 Msa1281040:CDS 40.0%
CATGCATCACCAATATTGAG+AGG - chr8_3:20209405-20209424 None:intergenic 40.0%
!! CTCTCAATATTGGTGATGCA+TGG + chr8_3:20209403-20209422 Msa1281040:CDS 40.0%
!! GGAAGTCATCAAGTCTTGTT+TGG + chr8_3:20209424-20209443 Msa1281040:CDS 40.0%
CTTGAAGAGGTTATGCTTCC+AGG + chr8_3:20206926-20206945 Msa1281040:CDS 45.0%
AGGTTATGCTTCCAGGGTTT+AGG + chr8_3:20206933-20206952 Msa1281040:CDS 45.0%
GTTGGATGAAACCTAAACCC+TGG - chr8_3:20206947-20206966 None:intergenic 45.0%
GTCTTACTTGGTAGATCCCA+TGG - chr8_3:20207067-20207086 None:intergenic 45.0%
! TGATGTGGTTGATGTGAGAG+AGG - chr8_3:20207196-20207215 None:intergenic 45.0%
! GTCCAAGAGACAGAAAGTAC+AGG + chr8_3:20207928-20207947 Msa1281040:CDS 45.0%
GGAACAGTGCAAGACCTAAT+AGG + chr8_3:20207949-20207968 Msa1281040:CDS 45.0%
CCAGCTCTTGTTACCCTATT+AGG - chr8_3:20207966-20207985 None:intergenic 45.0%
CCTAATAGGGTAACAAGAGC+TGG + chr8_3:20207963-20207982 Msa1281040:CDS 45.0%
TACAAAGGTAGAGCTGCCAA+AGG + chr8_3:20208071-20208090 Msa1281040:CDS 45.0%
AGGAATCTTGGGCAATATGC+AGG + chr8_3:20208800-20208819 Msa1281040:intron 45.0%
AGCTCTTTGAGCTGTAGCAT+TGG - chr8_3:20208839-20208858 None:intergenic 45.0%
AAAGAGCTCTCTCTCACTCA+TGG + chr8_3:20208851-20208870 Msa1281040:CDS 45.0%
AAGAGCTCTCTCTCACTCAT+GGG + chr8_3:20208852-20208871 Msa1281040:CDS 45.0%
ACACTGAATGGGAATCCAAC+GGG - chr8_3:20209381-20209400 None:intergenic 45.0%
CACACTGAATGGGAATCCAA+CGG - chr8_3:20209382-20209401 None:intergenic 45.0%
! GGGTTCATCAGAAGTACAAG+AGG - chr8_3:20209457-20209476 None:intergenic 45.0%
CAAGTACAGGGGAGAAAGAG+TGG + chr8_3:20207895-20207914 Msa1281040:CDS 50.0%
! GGGTAACAAGAGCTGGGTTT+TGG + chr8_3:20207970-20207989 Msa1281040:CDS 50.0%
!!! GCTGGGTTTTGGAAAGCAAC+AGG + chr8_3:20207981-20208000 Msa1281040:CDS 50.0%
CTAGAGTGACTCGCAAAGCT+AGG - chr8_3:20208973-20208992 None:intergenic 50.0%
ACACGAGGCACGTTCGCATT+AGG - chr8_3:20209327-20209346 None:intergenic 55.0%
TTGGATACGGTTCGACCCGT+TGG + chr8_3:20209363-20209382 Msa1281040:CDS 55.0%
AGGGTGCAGACACCCACATG+TGG - chr8_3:20208492-20208511 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 20206896 20209509 20206896 ID=Msa1281040;Name=Msa1281040
chr8_3 mRNA 20206896 20209509 20206896 ID=Msa1281040-mRNA-1;Parent=Msa1281040;Name=Msa1281040-mRNA-1;_AED=0.03;_eAED=0.04;_QI=0|0|0|1|1|1|3|0|398
chr8_3 exon 20206896 20207079 20206896 ID=Msa1281040-mRNA-1:exon:7448;Parent=Msa1281040-mRNA-1
chr8_3 exon 20207889 20208193 20207889 ID=Msa1281040-mRNA-1:exon:7449;Parent=Msa1281040-mRNA-1
chr8_3 exon 20208802 20209509 20208802 ID=Msa1281040-mRNA-1:exon:7450;Parent=Msa1281040-mRNA-1
chr8_3 CDS 20206896 20207079 20206896 ID=Msa1281040-mRNA-1:cds;Parent=Msa1281040-mRNA-1
chr8_3 CDS 20207889 20208193 20207889 ID=Msa1281040-mRNA-1:cds;Parent=Msa1281040-mRNA-1
chr8_3 CDS 20208802 20209509 20208802 ID=Msa1281040-mRNA-1:cds;Parent=Msa1281040-mRNA-1
Gene Sequence

>Msa1281040

GATATGGAAGAGAGAAATGGTTGTGAGAAACTTGAAGAGGTTATGCTTCCAGGGTTTAGGTTTCATCCAACTGATGAAGAACTTGTTGGATTTTACCTAAAGAAAAAGATTCAGCAACGCCCTCTTGCTATTGAGCTCATCAAGCAGCTTGATATTTATAAATTTGATCCATGGGATCTACCAAAGTTGGCAAGTACAGGGGAGAAAGAGTGGTATTTTTACTGTCCAAGAGACAGAAAGTACAGGAACAGTGCAAGACCTAATAGGGTAACAAGAGCTGGGTTTTGGAAAGCAACAGGAACAGACAGACCTATTTATTCCTCAGAGGGTTCTAAGTGTATTGGCTTGAAAAAATCCTTAGTTTTCTACAAAGGTAGAGCTGCCAAAGGAGTCAAAACTGATTGGATGATGCATGAGTTTAGACTACCTTCTCTCATAGATTCGTCATCATCTCCAAAGAAATATGTAGACAAGACCATTCCGGCCAATGAATCTTGGGCAATATGCAGGATATTCAAGAAAACCAATGCTACAGCTCAAAGAGCTCTCTCTCACTCATGGGTCCCACCTTTACTTGAAACATCAACCTCCAATGTTCTAACAAATGATGCAAACCACAACCAATTTTGTTCCTCAAACATGATGTTAACAAAGAAACCTAGCTTTGCGAGTCACTCTAGTACTACTACTAATAACCACAATAACCTAACACAACACTTAACCTCTTCTAGTAGTACTACACTTTGTCCCTTAGATGTTCTAACTTATAATAATCCAATTATTGATCCATTGATTTACAAACCCTTATACCGGTTACCAATTTCAAATGATCAAGATCTTAACCTTAGCACTGGCTTAGTATTCTCATCTCCTCTTGAAACATCTTGTAACAAAACTTCAATGGATTTTTCTTCCTTGCTATTAGGTATGTCATCTGAAGTAACAACTTCAAACTACATTGGTAATTTACAAGACCATTACAATAATGGGTATCCATTAATGGCTAACATTCCTAATGCGAACGTGCCTCGTGTTGATGATCAACAAGAGTTGGATACGGTTCGACCCGTTGGATTCCCATTCAGTGTGCCTCTCAATATTGGTGATGCATGGAAGTCATCAAGTCTTGTTTGGGATACTTCCTCTTGTACTTCTGATGAACCCTCTAGTTATTCTACTACCAAGTGTTATACTTAG
Protein sequence

>Msa1281040

DMEERNGCEKLEEVMLPGFRFHPTDEELVGFYLKKKIQQRPLAIELIKQLDIYKFDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTRAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLIDSSSSPKKYVDKTIPANESWAICRIFKKTNATAQRALSHSWVPPLLETSTSNVLTNDANHNQFCSSNMMLTKKPSFASHSSTTTNNHNNLTQHLTSSSSTTLCPLDVLTYNNPIIDPLIYKPLYRLPISNDQDLNLSTGLVFSSPLETSCNKTSMDFSSLLLGMSSEVTTSNYIGNLQDHYNNGYPLMANIPNANVPRVDDQQELDTVRPVGFPFSVPLNIGDAWKSSSLVWDTSSCTSDEPSSYSTTKCYT*