AlfalfaGEDB | Msa1281450

M. sativa cultivar zhongmu-4 / Msa1281450

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF18044.4

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1281450	XP_004510954.1	67.521	234	72	2	78	308	426	658	2.67e-91	296
Msa1281450	XP_004510954.1	77.143	70	16	0	1	70	253	322	7.79e-33	140

Showing 1 to 2 of 2 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1281450	sp\|Q10EL1\|C3H24_ORYSJ	42.918	233	108	11	80	293	477	703	1.04e-35	140
Msa1281450	sp\|Q10EL1\|C3H24_ORYSJ	75.714	70	17	0	1	70	306	375	1.77e-35	139

Showing 1 to 2 of 2 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1281450	A0A1S2YWC5	67.521	234	72	2	78	308	426	658	1.27e-91	296
Msa1281450	A0A1S2YWC5	77.143	70	16	0	1	70	253	322	3.72e-33	140

Showing 1 to 2 of 2 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa1281450	TF	C3H

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1281450	MtrunA17_Chr1g0171151	77.647	170	35	1	77	243	436	605	4.65e-69	226
Msa1281450	MtrunA17_Chr1g0171151	77.143	70	16	0	1	70	269	338	2.36e-35	135
Msa1281450	MtrunA17_Chr3g0088521	51.667	240	99	8	82	307	464	700	3.53e-54	188
Msa1281450	MtrunA17_Chr3g0088521	74.286	70	18	0	1	70	289	358	2.67e-35	135
Msa1281450	MtrunA17_Chr7g0257831	45.763	236	113	8	78	303	460	690	8.66e-42	154
Msa1281450	MtrunA17_Chr7g0257831	75.714	70	17	0	1	70	289	358	2.45e-36	138
Msa1281450	MtrunA17_Chr1g0187591	72.857	70	19	0	1	70	254	323	1.11e-32	127
Msa1281450	MtrunA17_Chr5g0430211	70.000	70	21	0	1	70	255	324	4.47e-32	126
Msa1281450	MtrunA17_Chr5g0437251	68.571	70	22	0	1	70	242	311	2.53e-31	124
Msa1281450	MtrunA17_Chr3g0092221	61.842	76	29	0	2	77	184	259	9.19e-31	120

Showing 1 to 10 of 21 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1281450	AT2G41900.1	77.143	70	16	0	1	70	286	355	1.13e-36	140
Msa1281450	AT2G41900.1	39.754	244	107	13	81	302	452	677	3.11e-24	103
Msa1281450	AT5G12850.1	71.014	69	20	0	2	70	283	351	3.84e-34	132
Msa1281450	AT5G12850.1	43.939	198	78	11	107	291	481	658	4.92e-26	108
Msa1281450	AT5G58620.1	74.286	70	18	0	1	70	234	303	4.25e-34	132
Msa1281450	AT2G40140.2	68.571	70	22	0	1	70	239	308	2.84e-30	121
Msa1281450	AT2G40140.1	68.571	70	22	0	1	70	239	308	2.84e-30	121
Msa1281450	AT3G55980.1	65.714	70	24	0	1	70	236	305	1.70e-29	118
Msa1281450	AT3G55980.2	65.714	70	24	0	1	70	303	372	1.90e-29	119
Msa1281450	AT2G25900.2	66.667	69	23	0	2	70	116	184	2.62e-29	114

Showing 1 to 10 of 16 entries

Previous1 2Next

Find 91 sgRNAs with CRISPR-Local

Find 900 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCCCTTCCTCAGTTGT+TGG	0.358560	8_3:-20989435	Msa1281450:CDS
AAATAAGACCATGGGTCTGT+AGG	0.574531	8_3:+20989408	None:intergenic
AACAACTGAGGAAGGGATTT+TGG	0.189164	8_3:+20989437	None:intergenic
AACAGCTCAAGTCACTCATA+AGG	0.519911	8_3:+20989835	None:intergenic
AACTATAATGGAACCTCCTA+AGG	0.491172	8_3:+20998290	None:intergenic
AACTGAAGAGTGTTAGTTCT+AGG	0.342883	8_3:-20989470	Msa1281450:CDS
AAGAGATCTTCAAGATTTGA+TGG	0.337434	8_3:+20989768	None:intergenic
AAGCCCCTTTCCTAAATTCA+GGG	0.489890	8_3:+20998257	None:intergenic
AAGCCGGTCCTAGTTCTAGT+CGG	0.644175	8_3:-20989806	Msa1281450:CDS
AATAGATTAAATTTGTGAAT+TGG	0.288759	8_3:+20989184	None:intergenic

Showing 1 to 10 of 91 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CTTAGAAACTAAGCAACTAA+AGG	+	chr8_3:20989793-20989812	None:intergenic	30.0%
AAGTAAAGGGTGAAAGTTTA+TGG	+	chr8_3:20989850-20989869	None:intergenic	30.0%
TTACGTAGAAATTAGGGTTT+AGG	+	chr8_3:20990049-20990068	None:intergenic	30.0%
TTAGGGTTACGTAGAAATTA+GGG	+	chr8_3:20990055-20990074	None:intergenic	30.0%
ATTAGGGTTACGTAGAAATT+AGG	+	chr8_3:20990056-20990075	None:intergenic	30.0%
ATTGTTAATCCACGTTAAGA+CGG	+	chr8_3:20990095-20990114	None:intergenic	30.0%
CGCTTTATGAATTGATGTTT+GGG	+	chr8_3:20990170-20990189	None:intergenic	30.0%
TCGCTTTATGAATTGATGTT+TGG	+	chr8_3:20990171-20990190	None:intergenic	30.0%
GACCAAAACATCTAATTTCA+TGG	+	chr8_3:20990417-20990436	None:intergenic	30.0%
AGAGAAAGTTTAGTGAAAAG+GGG	+	chr8_3:20990525-20990544	None:intergenic	30.0%

Showing 1 to 10 of 900 entries

Previous1 2 3 4 5…90Next

Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	20989155	20998344	20989155	ID=Msa1281450;Name=Msa1281450
chr8_3	mRNA	20989155	20998344	20989155	ID=Msa1281450-mRNA-1;Parent=Msa1281450;Name=Msa1281450-mRNA-1;_AED=0.23;_eAED=0.27;_QI=0\|0\|0\|1\|0\|1\|2\|0\|325
chr8_3	exon	20998147	20998344	20998147	ID=Msa1281450-mRNA-1:exon:7667;Parent=Msa1281450-mRNA-1
chr8_3	exon	20989155	20989934	20989155	ID=Msa1281450-mRNA-1:exon:7666;Parent=Msa1281450-mRNA-1
chr8_3	CDS	20998147	20998344	20998147	ID=Msa1281450-mRNA-1:cds;Parent=Msa1281450-mRNA-1
chr8_3	CDS	20989155	20989934	20989155	ID=Msa1281450-mRNA-1:cds;Parent=Msa1281450-mRNA-1

Gene Sequence

>Msa1281450

ATGCACCCAGGAGAGAATGCTCGGAGGAGGGACCTTAGGAGGTTCCATTATAGTTGCGTGCCTTGCCCTGAATTTAGGAAAGGGGCTTGTAGGCATGGAGATAAGTGTGAATATGCTCATGGAATATTCAAGTGTTGGCTACACCCACATCAGTATCGAACACGACTCTGTAAAGAGGGGACTAGTTGTGATAAAAGGGAAGCAATTTTCAATCTAGTCGGTTGGGATCTTCTCTCCAACTTCAATGTGCTGAGCTATTTAGATTGGCAGCAAAACCTTATGAGTGACTTGAGCTGTTTCTCAAAAGCCGGTCCTAGTTCTAGTCGGTCTAAGGCACTAAATCCATCAAATCTTGAAGATCTCTTTTGTGCGGAAATTTTGTTATCTACCAAGTATTCTGACCCAGCAATGGCTTCTGTTTTTTCCCCTTCACGTGAATCAGCTGCTATGAGTGAGCTTCAAAACATGTTATCGCCTTCAAATACTAATATGCCGTCTCCAAAGAAAGTTGAGCATCGTCTGTCACAGGCTTCAATTGGTGTCCCTTCATTCGGTAGCATGTCACCTAGAAGTCTTGAACCAATCTCCTCAATGAGCCCTCAAATGTATGCATTTCCTCATCGCGGGAAACAGCAGCAACAACTGAAGAGTGTTAGTTCTAGGGAACTCGGTTCCAAAATCCCTTCCTCAGTTGTTGGATCACCTACAGACCCATGGTCTTATTTGGGATCGCCTAATGAGATGTTTGATTGGTCCGTAAATGGAGACGAACTAAGTCGCCAAATGCAGAATACATCCTCATTTGAACATAAAATAAACGAGGACGAAGAGCCTCATCTATCATGGGTCCAAGTCCTACTGAAGGAATCCTCACCTAAGATGATTAAAGAGAAGTGTGCATCTTCTGTCCCTATCACATCTTCTGTCCAATTCACAAATTTAATCTATTTATCATTCGGTTTTAGGAGCTTGGCTTGA

Protein sequence

>Msa1281450

MHPGENARRRDLRRFHYSCVPCPEFRKGACRHGDKCEYAHGIFKCWLHPHQYRTRLCKEGTSCDKREAIFNLVGWDLLSNFNVLSYLDWQQNLMSDLSCFSKAGPSSSRSKALNPSNLEDLFCAEILLSTKYSDPAMASVFSPSRESAAMSELQNMLSPSNTNMPSPKKVEHRLSQASIGVPSFGSMSPRSLEPISSMSPQMYAFPHRGKQQQQLKSVSSRELGSKIPSSVVGSPTDPWSYLGSPNEMFDWSVNGDELSRQMQNTSSFEHKINEDEEPHLSWVQVLLKESSPKMIKEKCASSVPITSSVQFTNLIYLSFGFRSLA*