AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1281500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1281500 MtrunA17_Chr8g0352251 95.189 291 14 0 1 291 1 291 0.0 575
Msa1281500 MtrunA17_Chr8g0352231 86.316 95 12 1 298 391 984 1078 1.34e-47 174
Msa1281500 MtrunA17_Chr3g0088821 82.105 95 16 1 298 391 984 1078 5.11e-46 169
Msa1281500 MtrunA17_Chr3g0103391 45.933 209 91 5 21 209 20 226 2.81e-45 159
Msa1281500 MtrunA17_Chr4g0073711 68.750 96 30 0 296 391 943 1038 9.53e-41 154
Msa1281500 MtrunA17_Chr7g0267731 72.414 87 23 1 306 391 900 986 6.92e-38 145
Msa1281500 MtrunA17_Chr2g0296991 64.583 96 34 0 296 391 949 1044 1.08e-36 142
Msa1281500 MtrunA17_Chr2g0300261 49.669 151 67 4 114 259 33 179 5.42e-36 131
Msa1281500 MtrunA17_Chr3g0078671 60.194 103 34 1 296 391 947 1049 6.80e-36 139
Msa1281500 MtrunA17_Chr2g0292411 71.111 90 26 0 127 216 86 175 2.40e-35 129
Msa1281500 MtrunA17_Chr8g0383701 61.458 96 36 1 296 391 1001 1095 1.08e-34 136
Msa1281500 MtrunA17_Chr3g0137951 54.478 134 55 4 263 391 955 1087 2.34e-34 135
Msa1281500 MtrunA17_Chr7g0252781 67.059 85 24 3 310 391 6 89 8.15e-34 121
Msa1281500 MtrunA17_Chr8g0379241 60.204 98 37 2 296 391 894 991 1.62e-33 132
Msa1281500 MtrunA17_Chr8g0364641 69.231 78 24 0 314 391 904 981 3.37e-33 131
Msa1281500 MtrunA17_Chr2g0284211 58.163 98 39 2 296 391 882 979 7.35e-32 127
Msa1281500 MtrunA17_Chr8g0343451 45.614 171 71 7 115 283 128 278 1.36e-31 122
Msa1281500 MtrunA17_Chr1g0183381 66.667 78 26 0 314 391 827 904 2.99e-31 125
Msa1281500 MtrunA17_Chr1g0201731 69.231 78 23 1 314 391 1020 1096 4.96e-31 125
Msa1281500 MtrunA17_Chr2g0329811 56.190 105 41 1 117 216 144 248 1.59e-30 119
Msa1281500 MtrunA17_Chr7g0267581 47.020 151 59 7 72 219 99 231 3.94e-29 115
Msa1281500 MtrunA17_Chr1g0177091 49.593 123 49 4 109 229 128 239 8.50e-28 112
Msa1281500 MtrunA17_Chr4g0039801 48.101 79 41 0 296 374 1050 1128 1.15e-18 88.2
Msa1281500 MtrunA17_Chr5g0410641 46.835 79 42 0 296 374 1029 1107 1.24e-18 88.2
Msa1281500 MtrunA17_Chr1g0165411 44.304 79 44 0 296 374 1011 1089 1.76e-17 84.7
Msa1281500 MtrunA17_Chr7g0269741 43.038 79 45 0 296 374 1078 1156 7.47e-17 82.8
Msa1281500 MtrunA17_Chr1g0165421 41.772 79 46 0 296 374 1039 1117 1.64e-16 81.6
Msa1281500 MtrunA17_Chr2g0297351 40.351 114 48 3 283 376 899 1012 2.95e-16 80.9
Msa1281500 MtrunA17_Chr7g0274751 61.111 54 19 1 323 374 745 798 6.16e-14 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1281500 AT5G05170.1 80.000 95 18 1 298 391 971 1065 2.61e-44 164
Msa1281500 AT5G17420.1 83.333 78 13 0 314 391 949 1026 1.70e-40 153
Msa1281500 AT5G44030.3 82.051 78 14 0 314 391 693 770 4.23e-39 149
Msa1281500 AT5G44030.2 82.051 78 14 0 314 391 1001 1078 4.54e-39 149
Msa1281500 AT5G44030.1 82.051 78 14 0 314 391 972 1049 4.71e-39 149
Msa1281500 AT5G12840.4 38.750 240 120 7 29 245 27 262 2.40e-38 139
Msa1281500 AT5G12840.2 38.750 240 120 7 29 245 27 262 2.40e-38 139
Msa1281500 AT5G12840.5 47.917 144 74 1 103 245 120 263 9.66e-38 137
Msa1281500 AT5G12840.3 47.917 144 74 1 103 245 120 263 9.66e-38 137
Msa1281500 AT5G12840.1 47.917 144 74 1 103 245 120 263 9.66e-38 137
Msa1281500 AT3G20910.1 46.939 147 76 1 98 242 108 254 1.76e-37 137
Msa1281500 AT5G09870.1 60.417 96 37 1 296 391 974 1068 1.74e-34 135
Msa1281500 AT5G64740.1 60.417 96 37 1 296 391 989 1083 1.75e-34 135
Msa1281500 AT2G21770.1 60.417 96 37 1 296 391 992 1086 4.36e-34 134
Msa1281500 AT4G39350.1 70.000 80 23 1 312 391 1004 1082 2.43e-33 132
Msa1281500 AT4G18780.1 66.265 83 28 0 296 378 888 970 2.52e-32 129
Msa1281500 AT4G32410.1 73.750 80 19 2 298 376 987 1065 4.43e-32 129
Msa1281500 AT1G17590.3 46.857 175 70 9 51 216 74 234 2.74e-31 122
Msa1281500 AT1G17590.2 46.857 175 70 9 51 216 74 234 2.74e-31 122
Msa1281500 AT1G17590.4 46.857 175 70 9 51 216 74 234 2.74e-31 122
Msa1281500 AT1G17590.1 46.857 175 70 9 51 216 74 234 2.74e-31 122
Msa1281500 AT1G72830.1 56.250 112 46 3 115 223 137 248 5.59e-31 121
Msa1281500 AT2G25540.1 75.342 73 17 1 306 377 974 1046 1.48e-30 124
Msa1281500 AT1G30500.2 57.798 109 39 2 136 237 82 190 2.84e-30 115
Msa1281500 AT1G30500.1 62.245 98 30 2 147 237 89 186 2.95e-30 115
Msa1281500 AT3G14020.2 59.794 97 36 2 129 224 145 239 1.26e-29 117
Msa1281500 AT3G14020.1 59.794 97 36 2 129 224 145 239 1.26e-29 117
Msa1281500 AT1G72830.2 55.752 113 46 4 115 223 137 249 2.66e-29 116
Msa1281500 AT2G34720.2 48.855 131 61 3 114 240 23 151 8.63e-29 110
Msa1281500 AT2G34720.3 48.855 131 61 3 114 240 23 151 8.63e-29 110
Msa1281500 AT5G06510.1 36.408 206 87 7 30 216 13 193 1.80e-28 112
Msa1281500 AT5G06510.5 36.408 206 87 7 30 216 13 193 1.80e-28 112
Msa1281500 AT5G06510.2 36.408 206 87 7 30 216 13 193 1.80e-28 112
Msa1281500 AT5G06510.6 36.408 206 87 7 30 216 13 193 1.80e-28 112
Msa1281500 AT2G34720.1 46.154 143 70 4 102 239 45 185 1.86e-28 110
Msa1281500 AT3G05690.2 32.075 265 143 7 9 255 33 278 2.04e-28 114
Msa1281500 AT3G05690.1 34.156 243 123 7 31 255 18 241 3.20e-28 112
Msa1281500 AT1G54160.1 69.333 75 22 1 143 216 166 240 4.24e-28 112
Msa1281500 AT5G06510.4 53.465 101 32 3 119 216 10 98 6.65e-27 105
Msa1281500 AT5G06510.7 53.465 101 32 3 119 216 10 98 6.65e-27 105
Msa1281500 AT5G06510.3 53.465 101 32 3 119 216 56 144 2.26e-26 105
Msa1281500 AT1G72830.3 54.217 83 38 0 141 223 141 223 1.65e-21 94.4
Msa1281500 AT1G02730.1 46.835 79 42 0 296 374 1090 1168 3.81e-18 87.0
Msa1281500 AT5G16910.1 46.835 79 42 0 296 374 1053 1131 7.31e-18 86.3
Msa1281500 AT3G03050.1 46.835 79 42 0 296 374 1053 1131 9.09e-18 85.9
Msa1281500 AT2G33100.2 35.294 119 68 2 263 374 908 1024 3.88e-17 84.0
Msa1281500 AT2G33100.1 35.294 119 68 2 263 374 908 1024 3.88e-17 84.0
Msa1281500 AT4G38190.1 52.857 70 30 1 310 376 1025 1094 1.64e-16 82.0
Msa1281500 AT1G32180.1 45.946 74 38 1 299 372 895 966 1.14e-12 70.1
Msa1281500 AT1G32180.2 45.946 74 38 1 299 372 895 966 1.14e-12 70.1

Find 124 sgRNAs with CRISPR-Local

Find 285 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTTTCCTTAAAGGTCTTA+TGG 0.125123 8_3:-21115148 Msa1281500:CDS
ACAAGTTCCGTCTGCGAATT+TGG 0.146875 8_3:+21117896 None:intergenic
GGGATCTCTTTCATTTAATT+AGG 0.160199 8_3:-21120147 Msa1281500:five_prime_UTR
ATTCTCCAATCATCAGTTTC+TGG 0.161621 8_3:+21118639 None:intergenic
CATCTCTACCCTTTCCTTAA+AGG 0.169184 8_3:-21115156 Msa1281500:CDS
TCAATAAGAAAATTGTTATT+TGG 0.178427 8_3:-21119734 Msa1281500:five_prime_UTR
TCAATTAAATTAGGTAATTA+AGG 0.204465 8_3:-21120387 Msa1281500:five_prime_UTR
TCTCTTTCTATGTTATTATT+AGG 0.225399 8_3:+21119330 None:intergenic
ACATTACACTCAATTAAATT+AGG 0.234192 8_3:-21120396 Msa1281500:five_prime_UTR
CCGAATTGTGCATTTGAATA+AGG 0.237495 8_3:+21117778 None:intergenic
CAAACATAAAACTAATCTTT+TGG 0.243075 8_3:-21119546 Msa1281500:five_prime_UTR
GGCCAAATCTTGAATGCTTA+TGG 0.247241 8_3:-21117757 Msa1281500:CDS
GTCCATAAGCATTCAAGATT+TGG 0.253913 8_3:+21117755 None:intergenic
CAATGGTCGGCGTTCGATTC+TGG 0.255290 8_3:+21115121 None:intergenic
TCACTCACAACTGATCTTAA+AGG 0.263724 8_3:+21119760 None:intergenic
ATTCCACACTCTTCAGCTTT+AGG 0.269935 8_3:+21115015 None:intergenic
TCTAATGCTGCTCTAGAAAA+AGG 0.271832 8_3:-21116189 Msa1281500:CDS
AACCCATAATAGAGAGAAAA+TGG 0.274581 8_3:+21115071 None:intergenic
CAATCATGGGGTCCGCTCTT+TGG 0.290734 8_3:-21115210 Msa1281500:CDS
CCTTTCCTTAAAGGTCTTAT+GGG 0.294045 8_3:-21115147 Msa1281500:CDS
CAGCCTTGGTGGCTTGAAAA+TGG 0.313297 8_3:-21118567 Msa1281500:CDS
AAACAGGAGGGTGACTTCTT+TGG 0.313426 8_3:-21116018 Msa1281500:CDS
GGATCTCTTTCATTTAATTA+GGG 0.313659 8_3:-21120146 Msa1281500:five_prime_UTR
ACAGGGCATGTTTGATGTTT+CGG 0.314790 8_3:+21117954 None:intergenic
AGGCTGATGATGAGAGTAAA+TGG 0.326121 8_3:+21118584 None:intergenic
GGCGTCCCATAAGACCTTTA+AGG 0.342891 8_3:+21115142 None:intergenic
GAACTTACTATTGGAAGGTT+TGG 0.343696 8_3:+21119267 None:intergenic
TTGACAAAGCTCATATTGTT+AGG 0.344917 8_3:-21119790 Msa1281500:five_prime_UTR
AGTAAAGAAAATGAGATAAG+AGG 0.345654 8_3:-21120449 Msa1281500:five_prime_UTR
AGTACAACATAAAATATATA+TGG 0.350169 8_3:+21120547 None:intergenic
CTGATCAGTTGAAGATGGTT+TGG 0.350260 8_3:+21118542 None:intergenic
CTCAATATTCTAATTTCTCT+TGG 0.353738 8_3:+21120177 None:intergenic
ATTAGAATATTGAGATGATA+AGG 0.364899 8_3:-21120168 Msa1281500:five_prime_UTR
TATCAATGGCAACTCATTCT+TGG 0.382555 8_3:-21115802 Msa1281500:CDS
GCATTCTAGCATGATGCATT+TGG 0.399038 8_3:+21116832 None:intergenic
TTGAGAAGGGCAAGGGGAAA+TGG 0.400323 8_3:-21116252 Msa1281500:CDS
TGTCACACATTCAGAGCCTT+TGG 0.400488 8_3:-21118496 Msa1281500:CDS
TCAACAGTGGTTACCAATCA+TGG 0.406386 8_3:-21115224 Msa1281500:intron
GAAAGTTATTAAAGTTAGAA+AGG 0.407898 8_3:-21116706 Msa1281500:intron
TGAGCCTTGATTCTCATTGT+TGG 0.412750 8_3:+21116140 None:intergenic
TGGTAAATGCGGTTGAGGAC+AGG 0.424267 8_3:+21117936 None:intergenic
TCATCAGTTTCTGGTTTCCC+TGG 0.428859 8_3:+21118648 None:intergenic
TTCACAGGCAAATGGAAAAC+AGG 0.431715 8_3:-21116034 Msa1281500:CDS
AAAAGCTGTGAAAGGATGCC+AGG 0.439397 8_3:-21118666 Msa1281500:exon
CCTTATTCAAATGCACAATT+CGG 0.442412 8_3:-21117778 Msa1281500:CDS
ACTCTCATCATCAGCCTTGG+TGG 0.446091 8_3:-21118578 Msa1281500:CDS
CGCCGACCATTGTTGTAGTC+TGG 0.449299 8_3:-21115110 Msa1281500:CDS
CAAAGAGCGGACCCCATGAT+TGG 0.450901 8_3:+21115211 None:intergenic
TGAGCTTTGTCAATTGACTT+AGG 0.457384 8_3:+21119800 None:intergenic
GCAAAGGTCTTTGTCCTTGT+CGG 0.465491 8_3:+21120340 None:intergenic
CCAGTGACTCTTGTAGTAAA+CGG 0.472766 8_3:+21115039 None:intergenic
TTTAGCTGATCAGTTGAAGA+TGG 0.474075 8_3:+21118537 None:intergenic
GTTCGAGCTTCTTTGTATTG+AGG 0.481503 8_3:+21116220 None:intergenic
GCAGCACATGCACAAAATGC+AGG 0.482353 8_3:-21116106 Msa1281500:CDS
CTATGTCATTCACAGGCAAA+TGG 0.486227 8_3:-21116042 Msa1281500:CDS
TTTACTCTCATCATCAGCCT+TGG 0.487165 8_3:-21118581 Msa1281500:CDS
GTAAAGAAAATGAGATAAGA+GGG 0.487584 8_3:-21120448 Msa1281500:five_prime_UTR
CCATAAGACCTTTAAGGAAA+GGG 0.489767 8_3:+21115148 None:intergenic
GGAAACCAGAAACTGATGAT+TGG 0.490368 8_3:-21118644 Msa1281500:CDS
AACAATACTGGTGCAACATC+GGG 0.490937 8_3:-21116165 Msa1281500:CDS
GTCCATGGTAAATGCGGTTG+AGG 0.491108 8_3:+21117931 None:intergenic
TCTCAAAGCATGTTGGTGAC+GGG 0.492087 8_3:+21116269 None:intergenic
TTCTCAAAGCATGTTGGTGA+CGG 0.494518 8_3:+21116268 None:intergenic
TGACGGGATTCATGAAGATA+TGG 0.495855 8_3:+21116285 None:intergenic
CTCATGATGCTGTATATCAA+TGG 0.497051 8_3:-21115816 Msa1281500:CDS
TTAGAATATTGAGATGATAA+GGG 0.500778 8_3:-21120167 Msa1281500:five_prime_UTR
AATTCGCAGACGGAACTTGT+TGG 0.504090 8_3:-21117893 Msa1281500:CDS
CTTAAACAATGTTTCTGTTG+AGG 0.506583 8_3:-21120493 Msa1281500:five_prime_UTR
GAGAATAAAACATAGTGAGC+AGG 0.507446 8_3:-21118622 Msa1281500:CDS
TAGAAGAACTTACTATTGGA+AGG 0.510837 8_3:+21119262 None:intergenic
CTCAGGTGGGGACGTTGCCA+AGG 0.514046 8_3:-21117981 Msa1281500:intron
TACTAGGAAACACAAGGATA+AGG 0.518542 8_3:-21120528 Msa1281500:five_prime_UTR
CAACAGTGGTTACCAATCAT+GGG 0.518614 8_3:-21115223 Msa1281500:intron
TATATTGCAGGTGAAGATGA+AGG 0.518732 8_3:-21115855 Msa1281500:intron
TTCAACATCAGTTACCATGA+TGG 0.518987 8_3:-21116081 Msa1281500:CDS
GTCAATGCAAAGCAGTATCA+TGG 0.520607 8_3:-21116774 Msa1281500:CDS
TGGACCAAGGTGTTTGTCCA+TGG 0.523692 8_3:+21117916 None:intergenic
TTTGATGTTTCGGTGCTCCT+TGG 0.525070 8_3:+21117964 None:intergenic
CAACAATACTGGTGCAACAT+CGG 0.530920 8_3:-21116166 Msa1281500:CDS
TGCTTTGCATTGACATACAC+AGG 0.531370 8_3:+21116783 None:intergenic
GGTAAATGCGGTTGAGGACA+GGG 0.539516 8_3:+21117937 None:intergenic
TTGCCCTTCTCAAAGCATGT+TGG 0.541677 8_3:+21116262 None:intergenic
CTGTAAAGTCATTTCCATCA+TGG 0.545256 8_3:+21116067 None:intergenic
TACAGCACTATGTCATTCAC+AGG 0.550828 8_3:-21116049 Msa1281500:CDS
TGCTTATGGACAACAAGCTA+TGG 0.551820 8_3:-21117743 Msa1281500:intron
CCCATAAGACCTTTAAGGAA+AGG 0.556933 8_3:+21115147 None:intergenic
CCGTTTACTACAAGAGTCAC+TGG 0.559201 8_3:-21115039 Msa1281500:CDS
TTTGCCGCTTAAAATGGAAG+AGG 0.565386 8_3:-21116808 Msa1281500:CDS
TTGTATGAATCTGAGTTGGT+TGG 0.566115 8_3:+21120256 None:intergenic
TCAGAAGCTGAGTTGCATTG+AGG 0.568541 8_3:+21119293 None:intergenic
TGATATACAGCATCATGAGT+TGG 0.568591 8_3:+21115820 None:intergenic
ACATGCTTTGAGAAGGGCAA+GGG 0.570857 8_3:-21116259 Msa1281500:CDS
GTCACCAACATGCTTTGAGA+AGG 0.572667 8_3:-21116266 Msa1281500:CDS
ACGAAGACAATCGCGTGCAA+AGG 0.578373 8_3:-21116742 Msa1281500:CDS
GGTACCAACAATGAGAATCA+AGG 0.578464 8_3:-21116144 Msa1281500:CDS
TTTACCATGGACAAACACCT+TGG 0.581517 8_3:-21117920 Msa1281500:CDS
CATGCTTTGAGAAGGGCAAG+GGG 0.591440 8_3:-21116258 Msa1281500:CDS
GATGCATTTGGTATAGCTGA+GGG 0.592164 8_3:+21116844 None:intergenic
TTATCAGTTAGAGAAAGTGA+AGG 0.593911 8_3:+21118468 None:intergenic
TGATGCATTTGGTATAGCTG+AGG 0.596710 8_3:+21116843 None:intergenic
ACAGCATCATGAGTTGGATG+AGG 0.597562 8_3:+21115826 None:intergenic
TCACTTGTATGAATCTGAGT+TGG 0.601238 8_3:+21120252 None:intergenic
ATATTGCAGGTGAAGATGAA+GGG 0.607151 8_3:-21115854 Msa1281500:intron
GAAAGTGAAGGAGAAACCAA+AGG 0.608239 8_3:+21118480 None:intergenic
TCACCAACATGCTTTGAGAA+GGG 0.609839 8_3:-21116265 Msa1281500:CDS
GTCCTCAACCGCATTTACCA+TGG 0.610316 8_3:-21117933 Msa1281500:CDS
CTTTCTCTAACTGATAACTC+AGG 0.610628 8_3:-21118462 Msa1281500:intron
TGATGAGAGTAAATGGAAGA+TGG 0.612845 8_3:+21118591 None:intergenic
CAGCACATGCACAAAATGCA+GGG 0.616147 8_3:-21116105 Msa1281500:CDS
GGTCCTAAAGCTGAAGAGTG+TGG 0.621613 8_3:-21115018 Msa1281500:CDS
GACCAGACTACAACAATGGT+CGG 0.624199 8_3:+21115108 None:intergenic
AATCGACCAGACTACAACAA+TGG 0.628569 8_3:+21115104 None:intergenic
AAAGCTGTGAAAGGATGCCA+GGG 0.629084 8_3:-21118665 Msa1281500:exon
AACATGCTTTGAGAAGGGCA+AGG 0.629479 8_3:-21116260 Msa1281500:CDS
ACAGGCAAATGGAAAACAGG+AGG 0.631076 8_3:-21116031 Msa1281500:CDS
CAGGCAAATGGAAAACAGGA+GGG 0.651426 8_3:-21116030 Msa1281500:CDS
AGAAGGGCAAGGGGAAATGG+CGG 0.651466 8_3:-21116249 Msa1281500:CDS
CCTTGGTCCAAATTCGCAGA+CGG 0.654666 8_3:-21117903 Msa1281500:CDS
AAGAGAATATAAGAATAACA+AGG 0.662027 8_3:+21119390 None:intergenic
CCGTCTGCGAATTTGGACCA+AGG 0.662623 8_3:+21117903 None:intergenic
AACAGTGGTTACCAATCATG+GGG 0.667481 8_3:-21115222 Msa1281500:intron
AAGAAAAGTTTACCAAAGAG+CGG 0.667745 8_3:+21115198 None:intergenic
GTGTTTGTCCATGGTAAATG+CGG 0.682262 8_3:+21117925 None:intergenic
ATGTTGTACTAGGAAACACA+AGG 0.704202 8_3:-21120534 Msa1281500:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTTAAAAAAAAAAATT+AGG + chr8_3:21116089-21116108 None:intergenic 0.0%
!!! TAAATATTGTTGTATTTTTT+TGG + chr8_3:21115480-21115499 None:intergenic 10.0%
!!! TATTTTTTTTTACAAATATG+TGG - chr8_3:21118126-21118145 Msa1281500:intron 10.0%
!!! TATATATTTTATGTTGTACT+AGG - chr8_3:21115006-21115025 Msa1281500:CDS 15.0%
!! TCAATTAAATTAGGTAATTA+AGG - chr8_3:21115163-21115182 Msa1281500:CDS 15.0%
!!! TAAGGTTACATATTTTATTT+TGG - chr8_3:21115181-21115200 Msa1281500:CDS 15.0%
!!! AACAATATTTAATCTTTTGA+AGG - chr8_3:21115489-21115508 Msa1281500:intron 15.0%
!!! TCAATAAGAAAATTGTTATT+TGG - chr8_3:21115816-21115835 Msa1281500:CDS 15.0%
!!! TTCTTTTAAGTATGTATATT+TGG - chr8_3:21116435-21116454 Msa1281500:intron 15.0%
!!! TTTATTATGATTTTGTGATT+TGG - chr8_3:21116830-21116849 Msa1281500:CDS 15.0%
!!! ATATTAAGTGACATAATTTT+AGG - chr8_3:21117234-21117253 Msa1281500:intron 15.0%
!! TGAACAATAATAGTAAATAA+GGG + chr8_3:21117336-21117355 None:intergenic 15.0%
!! ATGAACAATAATAGTAAATA+AGG + chr8_3:21117337-21117356 None:intergenic 15.0%
!! TTCATAAAAAAATGTCTTAT+TGG - chr8_3:21117545-21117564 Msa1281500:intron 15.0%
!!! AAGACGTTTTTTATTTTTAA+GGG - chr8_3:21118592-21118611 Msa1281500:CDS 15.0%
!! AATAAAAGAAAAAATCACTT+TGG - chr8_3:21119885-21119904 Msa1281500:five_prime_UTR 15.0%
!! ACATTACACTCAATTAAATT+AGG - chr8_3:21115154-21115173 Msa1281500:CDS 20.0%
!! ATTAGAATATTGAGATGATA+AGG - chr8_3:21115382-21115401 Msa1281500:intron 20.0%
!! TTAGAATATTGAGATGATAA+GGG - chr8_3:21115383-21115402 Msa1281500:intron 20.0%
!!! CAAACATAAAACTAATCTTT+TGG - chr8_3:21116004-21116023 Msa1281500:CDS 20.0%
!! AAGAGAATATAAGAATAACA+AGG + chr8_3:21116163-21116182 None:intergenic 20.0%
!! TCTCTTTCTATGTTATTATT+AGG + chr8_3:21116223-21116242 None:intergenic 20.0%
!! TTGAATCAAAACTATAGATT+TGG + chr8_3:21116342-21116361 None:intergenic 20.0%
!!! TTGTTTTCCTTTATGAAAAA+TGG - chr8_3:21116407-21116426 Msa1281500:intron 20.0%
!!! TGTTTTCCTTTATGAAAAAT+GGG - chr8_3:21116408-21116427 Msa1281500:intron 20.0%
!!! AAAATTCCCATTTTTCATAA+AGG + chr8_3:21116417-21116436 None:intergenic 20.0%
!!! TGATTTTCTCAAATTATTAG+TGG + chr8_3:21116667-21116686 None:intergenic 20.0%
!! TTCAATGTAATTATATGTGT+CGG - chr8_3:21116692-21116711 Msa1281500:intron 20.0%
!! AACAATAATAGTAAATAAGG+GGG + chr8_3:21117334-21117353 None:intergenic 20.0%
!! GAACAATAATAGTAAATAAG+GGG + chr8_3:21117335-21117354 None:intergenic 20.0%
!! ACTATTATTGTTCATAATCA+AGG - chr8_3:21117342-21117361 Msa1281500:intron 20.0%
!! CTATTATTGTTCATAATCAA+GGG - chr8_3:21117343-21117362 Msa1281500:intron 20.0%
!!! GATAATTTGTTTATTTCTTG+TGG - chr8_3:21117939-21117958 Msa1281500:CDS 20.0%
!! TAATGATAAAATAGTTCGTA+AGG - chr8_3:21118149-21118168 Msa1281500:intron 20.0%
!! CTTAAAAATAAAAAACGTCT+TGG + chr8_3:21118593-21118612 None:intergenic 20.0%
!!! CAAGACGTTTTTTATTTTTA+AGG - chr8_3:21118591-21118610 Msa1281500:CDS 20.0%
!! AACAATATTAAAAGACTGAT+AGG + chr8_3:21118618-21118637 None:intergenic 20.0%
!! GAAAGTTATTAAAGTTAGAA+AGG - chr8_3:21118844-21118863 Msa1281500:intron 20.0%
!!! ATATCAATGATAATGCTATA+AGG + chr8_3:21118885-21118904 None:intergenic 20.0%
!! CATTGATATGATGAAAAAAA+TGG - chr8_3:21118896-21118915 Msa1281500:intron 20.0%
!! TTCTTAATATAAAACTCTTG+AGG + chr8_3:21119028-21119047 None:intergenic 20.0%
!! ATACTATCTTAATTGTATCT+TGG - chr8_3:21119064-21119083 Msa1281500:intron 20.0%
!! TTTATAATTTATACCTGTTG+CGG + chr8_3:21119608-21119627 None:intergenic 20.0%
!! AATAAGTCAACAATTTCATA+TGG + chr8_3:21120038-21120057 None:intergenic 20.0%
!! NNNNNNNGCTCAAATATGAA+GGG + chr8_3:21120082-21120101 None:intergenic 20.0%
!! NNNNNNNNGCTCAAATATGA+AGG + chr8_3:21120083-21120102 None:intergenic 20.0%
!!! TAAACTTTTCTTTGCATTTT+GGG - chr8_3:21120363-21120382 Msa1281500:five_prime_UTR 20.0%
! AGTAAAGAAAATGAGATAAG+AGG - chr8_3:21115101-21115120 Msa1281500:CDS 25.0%
! GTAAAGAAAATGAGATAAGA+GGG - chr8_3:21115102-21115121 Msa1281500:CDS 25.0%
! CTCAATATTCTAATTTCTCT+TGG + chr8_3:21115376-21115395 None:intergenic 25.0%
! GGATCTCTTTCATTTAATTA+GGG - chr8_3:21115404-21115423 Msa1281500:intron 25.0%
!! TCTTTAGAAGAACTTACTAT+TGG + chr8_3:21116295-21116314 None:intergenic 25.0%
!! ATTTGACCACAATTTTGTAA+AGG - chr8_3:21116362-21116381 Msa1281500:intron 25.0%
!! TTTGACCACAATTTTGTAAA+GGG - chr8_3:21116363-21116382 Msa1281500:intron 25.0%
! TCATAAAGGAAAACAAAAAC+AGG + chr8_3:21116403-21116422 None:intergenic 25.0%
! TTCAGTCAAGTAAATGAAAA+AGG - chr8_3:21116501-21116520 Msa1281500:intron 25.0%
! TCAGTCAAGTAAATGAAAAA+GGG - chr8_3:21116502-21116521 Msa1281500:intron 25.0%
!!! ATCACTTTGTTTTCATACTT+TGG - chr8_3:21116535-21116554 Msa1281500:intron 25.0%
! ATAAACAAGAAAGTTTGAAG+AGG + chr8_3:21117130-21117149 None:intergenic 25.0%
!! CAATTCAAGTAACTTTTTGA+AGG - chr8_3:21117377-21117396 Msa1281500:intron 25.0%
!!! CTCTTTTTTAATCTATAGAC+TGG - chr8_3:21117888-21117907 Msa1281500:CDS 25.0%
!! ACTTACCTTCTTTTTATTCA+TGG - chr8_3:21117912-21117931 Msa1281500:CDS 25.0%
!! CTTACCTTCTTTTTATTCAT+GGG - chr8_3:21117913-21117932 Msa1281500:CDS 25.0%
!! ATTTGTTTATTTCTTGTGGT+TGG - chr8_3:21117943-21117962 Msa1281500:CDS 25.0%
! ATATTCATTTATTCCTTGGA+AGG - chr8_3:21118039-21118058 Msa1281500:intron 25.0%
! AAGCAATCAACACATAATAT+CGG + chr8_3:21118331-21118350 None:intergenic 25.0%
! ACAATTACTAAGTACTAACA+TGG + chr8_3:21118426-21118445 None:intergenic 25.0%
!!! ACTTAATCTTTTAGGAAAGT+TGG + chr8_3:21118990-21119009 None:intergenic 25.0%
! TCCTAAAAGATTAAGTAGTT+TGG - chr8_3:21118994-21119013 Msa1281500:intron 25.0%
!! TCCAAACTACTTAATCTTTT+AGG + chr8_3:21118998-21119017 None:intergenic 25.0%
! AAGATTAAGTAGTTTGGAAA+AGG - chr8_3:21119000-21119019 Msa1281500:intron 25.0%
! TATGATCAATTCTACACAAA+TGG + chr8_3:21119216-21119235 None:intergenic 25.0%
! GGTAAAAAGATTGAATCAAA+TGG - chr8_3:21119553-21119572 Msa1281500:five_prime_UTR 25.0%
!!! ACAAAGCTTTAAGATTTTGA+GGG + chr8_3:21119961-21119980 None:intergenic 25.0%
!!! AACAAAGCTTTAAGATTTTG+AGG + chr8_3:21119962-21119981 None:intergenic 25.0%
!!! TGTTGACTTATTGTTGTTTA+TGG - chr8_3:21120046-21120065 Msa1281500:five_prime_UTR 25.0%
!! GTAAACTTTTCTTTGCATTT+TGG - chr8_3:21120362-21120381 Msa1281500:five_prime_UTR 25.0%
! CTTAAACAATGTTTCTGTTG+AGG - chr8_3:21115057-21115076 Msa1281500:CDS 30.0%
! CAATGATGTGTTGACAAAAA+TGG + chr8_3:21115129-21115148 None:intergenic 30.0%
! TTATTTTCTACTTCACGCAA+AGG + chr8_3:21115229-21115248 None:intergenic 30.0%
GGGATCTCTTTCATTTAATT+AGG - chr8_3:21115403-21115422 Msa1281500:intron 30.0%
TTGACAAAGCTCATATTGTT+AGG - chr8_3:21115760-21115779 Msa1281500:intron 30.0%
TAGAAGAACTTACTATTGGA+AGG + chr8_3:21116291-21116310 None:intergenic 30.0%
AAACACCCTTTACAAAATTG+TGG + chr8_3:21116371-21116390 None:intergenic 30.0%
TCTCAAATTATTAGTGGTGT+CGG + chr8_3:21116661-21116680 None:intergenic 30.0%
!! GAATTTGTTGTATCTTTGTC+TGG - chr8_3:21116852-21116871 Msa1281500:CDS 30.0%
TTATCAGTTAGAGAAAGTGA+AGG + chr8_3:21117085-21117104 None:intergenic 30.0%
! ATTTTAGGCCATTTGCAATT+TGG - chr8_3:21117249-21117268 Msa1281500:intron 30.0%
TCTAGATACCAAATTGCAAA+TGG + chr8_3:21117260-21117279 None:intergenic 30.0%
TCTAGATTTGTCAAACCAAT+TGG - chr8_3:21117274-21117293 Msa1281500:intron 30.0%
!!! AAACCAATTGGACTTTTTCA+TGG - chr8_3:21117286-21117305 Msa1281500:intron 30.0%
TTTCCATGAAAAAGTCCAAT+TGG + chr8_3:21117292-21117311 None:intergenic 30.0%
! AAAAATGTCTTATTGGTCTC+AGG - chr8_3:21117552-21117571 Msa1281500:intron 30.0%
! TTTTCCAAGATATGTACACA+TGG - chr8_3:21117711-21117730 Msa1281500:intron 30.0%
CCTTATTCAAATGCACAATT+CGG - chr8_3:21117772-21117791 Msa1281500:CDS 30.0%
CTTTCCCATGAATAAAAAGA+AGG + chr8_3:21117920-21117939 None:intergenic 30.0%
CAGCATATTCATTTATTCCT+TGG - chr8_3:21118035-21118054 Msa1281500:intron 30.0%
!! CTTCTATTTCTGAAGTATCT+GGG + chr8_3:21118199-21118218 None:intergenic 30.0%
!! TCTTCTATTTCTGAAGTATC+TGG + chr8_3:21118200-21118219 None:intergenic 30.0%
AAAGATGAATCTTGTGCAAA+AGG + chr8_3:21118508-21118527 None:intergenic 30.0%
! AGATTCATCTTTTCTCTGTA+TGG - chr8_3:21118516-21118535 Msa1281500:CDS 30.0%
!! TCTTTTAGGAAAGTTGGTTT+TGG + chr8_3:21118984-21119003 None:intergenic 30.0%
ATTGTATCTTGGATCAATCT+AGG - chr8_3:21119075-21119094 Msa1281500:intron 30.0%
TTGTATCTTGGATCAATCTA+GGG - chr8_3:21119076-21119095 Msa1281500:intron 30.0%
AATATAGAAACCATTCCCAA+GGG + chr8_3:21119114-21119133 None:intergenic 30.0%
AAATATAGAAACCATTCCCA+AGG + chr8_3:21119115-21119134 None:intergenic 30.0%
TCTCTTATTCGATGAAGATT+AGG - chr8_3:21119154-21119173 Msa1281500:intron 30.0%
ATGTAAGAATTGTCAGCATA+TGG + chr8_3:21119667-21119686 None:intergenic 30.0%
ACATGTCTTACATATATTGC+AGG - chr8_3:21119683-21119702 Msa1281500:five_prime_UTR 30.0%
TAAAGAGAAACACAAGTAAG+GGG + chr8_3:21119838-21119857 None:intergenic 30.0%
GTAAAGAGAAACACAAGTAA+GGG + chr8_3:21119839-21119858 None:intergenic 30.0%
TGTAAAGAGAAACACAAGTA+AGG + chr8_3:21119840-21119859 None:intergenic 30.0%
TTTGAACATGTAAAGTTCTG+CGG + chr8_3:21120227-21120246 None:intergenic 30.0%
CAGAACTTTACATGTTCAAA+TGG - chr8_3:21120227-21120246 Msa1281500:five_prime_UTR 30.0%
!! TTTATTATGAGAAGCGTTGT+TGG + chr8_3:21120271-21120290 None:intergenic 30.0%
AACGCTTCTCATAATAAACT+TGG - chr8_3:21120273-21120292 Msa1281500:five_prime_UTR 30.0%
CTTCTCATAATAAACTTGGT+AGG - chr8_3:21120277-21120296 Msa1281500:five_prime_UTR 30.0%
ATATCTTATGCTATCAACAG+TGG - chr8_3:21120313-21120332 Msa1281500:five_prime_UTR 30.0%
AAGAAAAGTTTACCAAAGAG+CGG + chr8_3:21120355-21120374 None:intergenic 30.0%
! GTCCATTTTCTCTCTATTAT+GGG - chr8_3:21120477-21120496 Msa1281500:five_prime_UTR 30.0%
AACCCATAATAGAGAGAAAA+TGG + chr8_3:21120482-21120501 None:intergenic 30.0%
ATGTTGTACTAGGAAACACA+AGG - chr8_3:21115016-21115035 Msa1281500:CDS 35.0%
TACTAGGAAACACAAGGATA+AGG - chr8_3:21115022-21115041 Msa1281500:CDS 35.0%
!!! TATTTTGGTTTTCTCCGACA+AGG - chr8_3:21115196-21115215 Msa1281500:CDS 35.0%
!! TTGTATGAATCTGAGTTGGT+TGG + chr8_3:21115297-21115316 None:intergenic 35.0%
TCACTTGTATGAATCTGAGT+TGG + chr8_3:21115301-21115320 None:intergenic 35.0%
! TGAGCTTTGTCAATTGACTT+AGG + chr8_3:21115753-21115772 None:intergenic 35.0%
TCACTCACAACTGATCTTAA+AGG + chr8_3:21115793-21115812 None:intergenic 35.0%
GAACTTACTATTGGAAGGTT+TGG + chr8_3:21116286-21116305 None:intergenic 35.0%
AAGTTTAAGAACACAGAGCT+TGG - chr8_3:21116570-21116589 Msa1281500:intron 35.0%
AGCTTATCTGAGTAAAAGCA+CGG - chr8_3:21116612-21116631 Msa1281500:intron 35.0%
TGTATCTTTGTCTGGTTGAA+AGG - chr8_3:21116860-21116879 Msa1281500:intron 35.0%
TGAAAGGAAAAAGCTGTGAA+AGG - chr8_3:21116876-21116895 Msa1281500:intron 35.0%
ATTCTCCAATCATCAGTTTC+TGG + chr8_3:21116914-21116933 None:intergenic 35.0%
GAGAATAAAACATAGTGAGC+AGG - chr8_3:21116928-21116947 Msa1281500:intron 35.0%
TGATGAGAGTAAATGGAAGA+TGG + chr8_3:21116962-21116981 None:intergenic 35.0%
TTTAGCTGATCAGTTGAAGA+TGG + chr8_3:21117016-21117035 None:intergenic 35.0%
CTTTCTCTAACTGATAACTC+AGG - chr8_3:21117088-21117107 Msa1281500:intron 35.0%
TTCACCATGTGTACATATCT+TGG + chr8_3:21117718-21117737 None:intergenic 35.0%
! TGGTGAACTTTTGTCATATC+TGG - chr8_3:21117731-21117750 Msa1281500:intron 35.0%
! CTTTTGTCATATCTGGTTAC+AGG - chr8_3:21117738-21117757 Msa1281500:intron 35.0%
CCGAATTGTGCATTTGAATA+AGG + chr8_3:21117775-21117794 None:intergenic 35.0%
GTCCATAAGCATTCAAGATT+TGG + chr8_3:21117798-21117817 None:intergenic 35.0%
ATATTGTGTGCACCTATATC+TGG - chr8_3:21117978-21117997 Msa1281500:CDS 35.0%
TATTGTGTGCACCTATATCT+GGG - chr8_3:21117979-21117998 Msa1281500:CDS 35.0%
TAATATGCAATGTCCTTCCA+AGG + chr8_3:21118055-21118074 None:intergenic 35.0%
!! AATAGAAGAGTATCAGTGTC+CGG - chr8_3:21118211-21118230 Msa1281500:intron 35.0%
TCTTGTGCAAAAGGTAATGA+GGG + chr8_3:21118499-21118518 None:intergenic 35.0%
ATCTTGTGCAAAAGGTAATG+AGG + chr8_3:21118500-21118519 None:intergenic 35.0%
GAAAAAAGGAAGAGAAAGAG+AGG + chr8_3:21118568-21118587 None:intergenic 35.0%
AAAACGTCTTGGACGAAAAA+AGG + chr8_3:21118582-21118601 None:intergenic 35.0%
!! AATGCTTTTGCCGCTTAAAA+TGG - chr8_3:21118736-21118755 Msa1281500:intron 35.0%
!! TCTAATGCTGCTCTAGAAAA+AGG - chr8_3:21119361-21119380 Msa1281500:five_prime_UTR 35.0%
CTAGAAAAAGGCAACAATAC+TGG - chr8_3:21119373-21119392 Msa1281500:five_prime_UTR 35.0%
TTCAACATCAGTTACCATGA+TGG - chr8_3:21119469-21119488 Msa1281500:five_prime_UTR 35.0%
CTGTAAAGTCATTTCCATCA+TGG + chr8_3:21119486-21119505 None:intergenic 35.0%
AATTTATACCTGTTGCGGTA+TGG + chr8_3:21119603-21119622 None:intergenic 35.0%
TATATTGCAGGTGAAGATGA+AGG - chr8_3:21119695-21119714 Msa1281500:five_prime_UTR 35.0%
ATATTGCAGGTGAAGATGAA+GGG - chr8_3:21119696-21119715 Msa1281500:five_prime_UTR 35.0%
TGATATACAGCATCATGAGT+TGG + chr8_3:21119733-21119752 None:intergenic 35.0%
CTCATGATGCTGTATATCAA+TGG - chr8_3:21119734-21119753 Msa1281500:five_prime_UTR 35.0%
TATCAATGGCAACTCATTCT+TGG - chr8_3:21119748-21119767 Msa1281500:five_prime_UTR 35.0%
CTAAGTTAGTTAGACTACAG+TGG - chr8_3:21119771-21119790 Msa1281500:five_prime_UTR 35.0%
! TGTCTCACTCATTTTGCAAA+TGG + chr8_3:21119865-21119884 None:intergenic 35.0%
! CCATAAGACCTTTAAGGAAA+GGG + chr8_3:21120405-21120424 None:intergenic 35.0%
! CCTTTCCTTAAAGGTCTTAT+GGG - chr8_3:21120403-21120422 Msa1281500:five_prime_UTR 35.0%
! CGTCCATTTTCTCTCTATTA+TGG - chr8_3:21120476-21120495 Msa1281500:five_prime_UTR 35.0%
! TAAAAGCACGGATACAGACA+CGG - chr8_3:21116624-21116643 Msa1281500:intron 40.0%
ACATTTAGTCCCTTGAAGCA+CGG + chr8_3:21116770-21116789 None:intergenic 40.0%
GGAAACCAGAAACTGATGAT+TGG - chr8_3:21116906-21116925 Msa1281500:intron 40.0%
! AGGCTGATGATGAGAGTAAA+TGG + chr8_3:21116969-21116988 None:intergenic 40.0%
TTTACTCTCATCATCAGCCT+TGG - chr8_3:21116969-21116988 Msa1281500:intron 40.0%
CTGATCAGTTGAAGATGGTT+TGG + chr8_3:21117011-21117030 None:intergenic 40.0%
GAAAGTGAAGGAGAAACCAA+AGG + chr8_3:21117073-21117092 None:intergenic 40.0%
GGCTAAGATGTGTAAGCAAA+AGG + chr8_3:21117174-21117193 None:intergenic 40.0%
TACAGATAACACAAGCATGC+TGG + chr8_3:21117195-21117214 None:intergenic 40.0%
! AATGTCTTATTGGTCTCAGG+TGG - chr8_3:21117555-21117574 Msa1281500:intron 40.0%
! ATGTCTTATTGGTCTCAGGT+GGG - chr8_3:21117556-21117575 Msa1281500:intron 40.0%
ACAGGGCATGTTTGATGTTT+CGG + chr8_3:21117599-21117618 None:intergenic 40.0%
GTGTTTGTCCATGGTAAATG+CGG + chr8_3:21117628-21117647 None:intergenic 40.0%
TTTACCATGGACAAACACCT+TGG - chr8_3:21117630-21117649 Msa1281500:intron 40.0%
GGCCAAATCTTGAATGCTTA+TGG - chr8_3:21117793-21117812 Msa1281500:CDS 40.0%
TGCTTATGGACAACAAGCTA+TGG - chr8_3:21117807-21117826 Msa1281500:intron 40.0%
! ATTTCTTGTGGTTGGTGTCT+AGG - chr8_3:21117951-21117970 Msa1281500:CDS 40.0%
TATCGCTATCGAATATGTGC+CGG + chr8_3:21118233-21118252 None:intergenic 40.0%
GTATCTTTAGCTGTAAGCCT+CGG - chr8_3:21118462-21118481 Msa1281500:intron 40.0%
GCATAATGCCAATAGCTGTT+AGG + chr8_3:21118678-21118697 None:intergenic 40.0%
GATGCATTTGGTATAGCTGA+GGG + chr8_3:21118709-21118728 None:intergenic 40.0%
TGATGCATTTGGTATAGCTG+AGG + chr8_3:21118710-21118729 None:intergenic 40.0%
GCATTCTAGCATGATGCATT+TGG + chr8_3:21118721-21118740 None:intergenic 40.0%
! TTTGCCGCTTAAAATGGAAG+AGG - chr8_3:21118742-21118761 Msa1281500:intron 40.0%
! GGTTCCTCTTCCATTTTAAG+CGG + chr8_3:21118749-21118768 None:intergenic 40.0%
! TGCTTTGCATTGACATACAC+AGG + chr8_3:21118770-21118789 None:intergenic 40.0%
GTCAATGCAAAGCAGTATCA+TGG - chr8_3:21118776-21118795 Msa1281500:intron 40.0%
AGGGTAACTTAATTAGCCCT+TGG - chr8_3:21119095-21119114 Msa1281500:intron 40.0%
GGGTAACTTAATTAGCCCTT+GGG - chr8_3:21119096-21119115 Msa1281500:intron 40.0%
ACTTAATTAGCCCTTGGGAA+TGG - chr8_3:21119101-21119120 Msa1281500:intron 40.0%
TGACGGGATTCATGAAGATA+TGG + chr8_3:21119268-21119287 None:intergenic 40.0%
! TTCTCAAAGCATGTTGGTGA+CGG + chr8_3:21119285-21119304 None:intergenic 40.0%
!! TCACCAACATGCTTTGAGAA+GGG - chr8_3:21119285-21119304 Msa1281500:five_prime_UTR 40.0%
GTTCGAGCTTCTTTGTATTG+AGG + chr8_3:21119333-21119352 None:intergenic 40.0%
CAACAATACTGGTGCAACAT+CGG - chr8_3:21119384-21119403 Msa1281500:five_prime_UTR 40.0%
AACAATACTGGTGCAACATC+GGG - chr8_3:21119385-21119404 Msa1281500:five_prime_UTR 40.0%
GGTACCAACAATGAGAATCA+AGG - chr8_3:21119406-21119425 Msa1281500:five_prime_UTR 40.0%
TGAGCCTTGATTCTCATTGT+TGG + chr8_3:21119413-21119432 None:intergenic 40.0%
TACAGCACTATGTCATTCAC+AGG - chr8_3:21119501-21119520 Msa1281500:five_prime_UTR 40.0%
CTATGTCATTCACAGGCAAA+TGG - chr8_3:21119508-21119527 Msa1281500:five_prime_UTR 40.0%
TTCACAGGCAAATGGAAAAC+AGG - chr8_3:21119516-21119535 Msa1281500:five_prime_UTR 40.0%
! TCCAAAGCATCAGATGAAGA+CGG - chr8_3:21120196-21120215 Msa1281500:five_prime_UTR 40.0%
!! ATTATGAGAAGCGTTGTTGG+AGG + chr8_3:21120268-21120287 None:intergenic 40.0%
TCAACAGTGGTTACCAATCA+TGG - chr8_3:21120326-21120345 Msa1281500:five_prime_UTR 40.0%
CAACAGTGGTTACCAATCAT+GGG - chr8_3:21120327-21120346 Msa1281500:five_prime_UTR 40.0%
AACAGTGGTTACCAATCATG+GGG - chr8_3:21120328-21120347 Msa1281500:five_prime_UTR 40.0%
CATCTCTACCCTTTCCTTAA+AGG - chr8_3:21120394-21120413 Msa1281500:five_prime_UTR 40.0%
CCCTTTCCTTAAAGGTCTTA+TGG - chr8_3:21120402-21120421 Msa1281500:five_prime_UTR 40.0%
! CCCATAAGACCTTTAAGGAA+AGG + chr8_3:21120406-21120425 None:intergenic 40.0%
AATCGACCAGACTACAACAA+TGG + chr8_3:21120449-21120468 None:intergenic 40.0%
CCAGTGACTCTTGTAGTAAA+CGG + chr8_3:21120514-21120533 None:intergenic 40.0%
ATTCCACACTCTTCAGCTTT+AGG + chr8_3:21120538-21120557 None:intergenic 40.0%
GCAAAGGTCTTTGTCCTTGT+CGG + chr8_3:21115213-21115232 None:intergenic 45.0%
TCAGAAGCTGAGTTGCATTG+AGG + chr8_3:21116260-21116279 None:intergenic 45.0%
AAAAGCTGTGAAAGGATGCC+AGG - chr8_3:21116884-21116903 Msa1281500:intron 45.0%
AAAGCTGTGAAAGGATGCCA+GGG - chr8_3:21116885-21116904 Msa1281500:intron 45.0%
!! TCATCAGTTTCTGGTTTCCC+TGG + chr8_3:21116905-21116924 None:intergenic 45.0%
TGTCACACATTCAGAGCCTT+TGG - chr8_3:21117054-21117073 Msa1281500:intron 45.0%
! TGTCTTATTGGTCTCAGGTG+GGG - chr8_3:21117557-21117576 Msa1281500:intron 45.0%
!! TTTGATGTTTCGGTGCTCCT+TGG + chr8_3:21117589-21117608 None:intergenic 45.0%
ACAAGTTCCGTCTGCGAATT+TGG + chr8_3:21117657-21117676 None:intergenic 45.0%
AATTCGCAGACGGAACTTGT+TGG - chr8_3:21117657-21117676 Msa1281500:intron 45.0%
CACCTATATCTGGGCATGAT+AGG - chr8_3:21117988-21118007 Msa1281500:intron 45.0%
AGCCTATCATGCCCAGATAT+AGG + chr8_3:21117993-21118012 None:intergenic 45.0%
ACTCGAGTCCTAACAGCTAT+TGG - chr8_3:21118667-21118686 Msa1281500:exon 45.0%
!! TCTCAAAGCATGTTGGTGAC+GGG + chr8_3:21119284-21119303 None:intergenic 45.0%
!! GTCACCAACATGCTTTGAGA+AGG - chr8_3:21119284-21119303 Msa1281500:five_prime_UTR 45.0%
TTGCCCTTCTCAAAGCATGT+TGG + chr8_3:21119291-21119310 None:intergenic 45.0%
!! AACATGCTTTGAGAAGGGCA+AGG - chr8_3:21119290-21119309 Msa1281500:five_prime_UTR 45.0%
!! ACATGCTTTGAGAAGGGCAA+GGG - chr8_3:21119291-21119310 Msa1281500:five_prime_UTR 45.0%
CAGCACATGCACAAAATGCA+GGG - chr8_3:21119445-21119464 Msa1281500:five_prime_UTR 45.0%
ACAGGCAAATGGAAAACAGG+AGG - chr8_3:21119519-21119538 Msa1281500:five_prime_UTR 45.0%
CAGGCAAATGGAAAACAGGA+GGG - chr8_3:21119520-21119539 Msa1281500:five_prime_UTR 45.0%
AAACAGGAGGGTGACTTCTT+TGG - chr8_3:21119532-21119551 Msa1281500:five_prime_UTR 45.0%
! ACAGCATCATGAGTTGGATG+AGG + chr8_3:21119727-21119746 None:intergenic 45.0%
TCCGTCTTCATCTGATGCTT+TGG + chr8_3:21120200-21120219 None:intergenic 45.0%
AACTTGGTAGGAGTTGTTGC+TGG - chr8_3:21120289-21120308 Msa1281500:five_prime_UTR 45.0%
GACCAGACTACAACAATGGT+CGG + chr8_3:21120445-21120464 None:intergenic 45.0%
CCGTTTACTACAAGAGTCAC+TGG - chr8_3:21120511-21120530 Msa1281500:five_prime_UTR 45.0%
!! AAGTTTATAAAAAAAAAATT+TGG + chr8_3:21115664-21115683 None:intergenic 5.0%
!!! AAAGTAATTTAAATTTTTAT+CGG + chr8_3:21118294-21118313 None:intergenic 5.0%
! TCCTCGGATTAGACGTGTCT+CGG + chr8_3:21116743-21116762 None:intergenic 50.0%
ACTCTCATCATCAGCCTTGG+TGG - chr8_3:21116972-21116991 Msa1281500:intron 50.0%
! CAGCCTTGGTGGCTTGAAAA+TGG - chr8_3:21116983-21117002 Msa1281500:intron 50.0%
!! GAGCCATTTTCAAGCCACCA+AGG + chr8_3:21116989-21117008 None:intergenic 50.0%
GGTAAATGCGGTTGAGGACA+GGG + chr8_3:21117616-21117635 None:intergenic 50.0%
TGGTAAATGCGGTTGAGGAC+AGG + chr8_3:21117617-21117636 None:intergenic 50.0%
GTCCTCAACCGCATTTACCA+TGG - chr8_3:21117617-21117636 Msa1281500:intron 50.0%
GTCCATGGTAAATGCGGTTG+AGG + chr8_3:21117622-21117641 None:intergenic 50.0%
! TGGACCAAGGTGTTTGTCCA+TGG + chr8_3:21117637-21117656 None:intergenic 50.0%
CCTTGGTCCAAATTCGCAGA+CGG - chr8_3:21117647-21117666 Msa1281500:intron 50.0%
ACGAAGACAATCGCGTGCAA+AGG - chr8_3:21118808-21118827 Msa1281500:intron 50.0%
!! CATGCTTTGAGAAGGGCAAG+GGG - chr8_3:21119292-21119311 Msa1281500:five_prime_UTR 50.0%
TTGAGAAGGGCAAGGGGAAA+TGG - chr8_3:21119298-21119317 Msa1281500:five_prime_UTR 50.0%
GCAGCACATGCACAAAATGC+AGG - chr8_3:21119444-21119463 Msa1281500:five_prime_UTR 50.0%
ACCTGTTGCGGTATGGTTGA+GGG + chr8_3:21119596-21119615 None:intergenic 50.0%
TACCTGTTGCGGTATGGTTG+AGG + chr8_3:21119597-21119616 None:intergenic 50.0%
GACTACAGTGGTGAAACCAG+TGG - chr8_3:21119783-21119802 Msa1281500:five_prime_UTR 50.0%
AAGTAAGGGGAGAACGAACG+AGG + chr8_3:21119825-21119844 None:intergenic 50.0%
GGCGTCCCATAAGACCTTTA+AGG + chr8_3:21120411-21120430 None:intergenic 50.0%
GGTCCTAAAGCTGAAGAGTG+TGG - chr8_3:21120532-21120551 Msa1281500:five_prime_UTR 50.0%
ACCGAGACACGTCTAATCCG+AGG - chr8_3:21116739-21116758 Msa1281500:CDS 55.0%
CTTGAAGCACGGACACTCCT+CGG + chr8_3:21116759-21116778 None:intergenic 55.0%
!! GAGGAGTGTCCGTGCTTCAA+GGG - chr8_3:21116758-21116777 Msa1281500:CDS 55.0%
CCGTCTGCGAATTTGGACCA+AGG + chr8_3:21117650-21117669 None:intergenic 55.0%
TGAGGGAAACAAGAGAGCCG+AGG + chr8_3:21118482-21118501 None:intergenic 55.0%
AGAAGGGCAAGGGGAAATGG+CGG - chr8_3:21119301-21119320 Msa1281500:five_prime_UTR 55.0%
GTTGCGGTATGGTTGAGGGA+GGG + chr8_3:21119592-21119611 None:intergenic 55.0%
TGTTGCGGTATGGTTGAGGG+AGG + chr8_3:21119593-21119612 None:intergenic 55.0%
TCCCTCAACCATACCGCAAC+AGG - chr8_3:21119592-21119611 Msa1281500:five_prime_UTR 55.0%
CAGTGGTGAAACCAGTGGCA+TGG - chr8_3:21119788-21119807 Msa1281500:five_prime_UTR 55.0%
CATGACGTGTACCATGCCAC+TGG + chr8_3:21119802-21119821 None:intergenic 55.0%
CAAAGAGCGGACCCCATGAT+TGG + chr8_3:21120342-21120361 None:intergenic 55.0%
CAATCATGGGGTCCGCTCTT+TGG - chr8_3:21120340-21120359 Msa1281500:five_prime_UTR 55.0%
CAATGGTCGGCGTTCGATTC+TGG + chr8_3:21120432-21120451 None:intergenic 55.0%
CGCCGACCATTGTTGTAGTC+TGG - chr8_3:21120440-21120459 Msa1281500:five_prime_UTR 55.0%
!! CGAGGAGTGTCCGTGCTTCA+AGG - chr8_3:21116757-21116776 Msa1281500:CDS 60.0%
CTCAGGTGGGGACGTTGCCA+AGG - chr8_3:21117569-21117588 Msa1281500:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 21115005 21120567 21115005 ID=Msa1281500;Name=Msa1281500
chr8_3 mRNA 21115005 21120567 21115005 ID=Msa1281500-mRNA-1;Parent=Msa1281500;Name=Msa1281500-mRNA-1;_AED=0.16;_eAED=0.16;_QI=1310|0.71|0.62|1|0.85|0.75|8|0|391
chr8_3 exon 21115005 21115239 21115005 ID=Msa1281500-mRNA-1:exon:7724;Parent=Msa1281500-mRNA-1
chr8_3 exon 21115798 21115867 21115798 ID=Msa1281500-mRNA-1:exon:7723;Parent=Msa1281500-mRNA-1
chr8_3 exon 21115998 21116307 21115998 ID=Msa1281500-mRNA-1:exon:7722;Parent=Msa1281500-mRNA-1
chr8_3 exon 21116707 21116871 21116707 ID=Msa1281500-mRNA-1:exon:7721;Parent=Msa1281500-mRNA-1
chr8_3 exon 21117744 21117812 21117744 ID=Msa1281500-mRNA-1:exon:7720;Parent=Msa1281500-mRNA-1
chr8_3 exon 21117883 21117998 21117883 ID=Msa1281500-mRNA-1:exon:7719;Parent=Msa1281500-mRNA-1
chr8_3 exon 21118463 21118690 21118463 ID=Msa1281500-mRNA-1:exon:7718;Parent=Msa1281500-mRNA-1
chr8_3 exon 21119275 21120567 21119275 ID=Msa1281500-mRNA-1:exon:7717;Parent=Msa1281500-mRNA-1
chr8_3 five_prime_UTR 21119275 21120567 21119275 ID=Msa1281500-mRNA-1:five_prime_utr;Parent=Msa1281500-mRNA-1
chr8_3 five_prime_UTR 21118674 21118690 21118674 ID=Msa1281500-mRNA-1:five_prime_utr;Parent=Msa1281500-mRNA-1
chr8_3 CDS 21118463 21118673 21118463 ID=Msa1281500-mRNA-1:cds;Parent=Msa1281500-mRNA-1
chr8_3 CDS 21117883 21117998 21117883 ID=Msa1281500-mRNA-1:cds;Parent=Msa1281500-mRNA-1
chr8_3 CDS 21117744 21117812 21117744 ID=Msa1281500-mRNA-1:cds;Parent=Msa1281500-mRNA-1
chr8_3 CDS 21116707 21116871 21116707 ID=Msa1281500-mRNA-1:cds;Parent=Msa1281500-mRNA-1
chr8_3 CDS 21115998 21116307 21115998 ID=Msa1281500-mRNA-1:cds;Parent=Msa1281500-mRNA-1
chr8_3 CDS 21115798 21115867 21115798 ID=Msa1281500-mRNA-1:cds;Parent=Msa1281500-mRNA-1
chr8_3 CDS 21115005 21115239 21115005 ID=Msa1281500-mRNA-1:cds;Parent=Msa1281500-mRNA-1
Gene Sequence

>Msa1281500

ATGCCAGGGAAACCAGAAACTGATGATTGGAGAATAAAACATAGTGAGCAGGTTCAGTTGCCATCTTCCATTTACTCTCATCATCAGCCTTGGTGGCTTGAAAATGGCTCCAAACCATCTTCAACTGATCAGCTAAATAGTTCAATCATGAATGATGTCACACATTCAGAGCCTTTGGTTTCTCCTTCACTTTCTCTAACTGATAACTCAGGTGGGGACGTTGCCAAGGAGCACCGAAACATCAAACATGCCCTGTCCTCAACCGCATTTACCATGGACAAACACCTTGGTCCAAATTCGCAGACGGAACTTGTTGGTCATTCAATTGTTTTAACATCTCCTTATTCAAATGCACAATTCGGCCAAATCTTGAATGCTTATGGACAACAAGCTATGATGAACCCTCAGCTATACCAAATGCATCATGCTAGAATGCTTTTGCCGCTTAAAATGGAAGAGGAACCTGTGTATGTCAATGCAAAGCAGTATCATGGTATTTTGAGACGAAGACAATCGCGTGCAAAGGCTGAGCTTGAAAAGAAAGTTATTAAAGTTAGAAAGCCATATCTTCATGAATCCCGTCACCAACATGCTTTGAGAAGGGCAAGGGGAAATGGCGGTCGTTTCCTCAATACAAAGAAGCTCGAACACAACGATTCTAATGCTGCTCTAGAAAAAGGCAACAATACTGGTGCAACATCGGGTACCAACAATGAGAATCAAGGCTCATCTAATGTGTCGCAGCACATGCACAAAATGCAGGGTTTCAACATCAGTTACCATGATGGAAATGACTTTACAGCACTATGTCATTCACAGGCAAATGGAAAACAGGAGGGTGACTTCTTTGGTAAAAAGATTGAATCAAATGGTGAAGATGAAGGGCTTTGCCTCATCCAACTCATGATGCTGTATATCAATGGCAACTCATTCTTGGCTAATGGTTACCAATCATGGGGTCCGCTCTTTGGTAAACTTTTCTTTGCATTTTGGGTTATCGTTCATCTCTACCCTTTCCTTAAAGGTCTTATGGGACGCCAGAATCGAACGCCGACCATTGTTGTAGTCTGGTCGATTCTTCTTGCGTCCATTTTCTCTCTATTATGGGTTCGAGTTGATCCGTTTACTACAAGAGTCACTGGTCCTAAAGCTGAAGAGTGTGGAATTAACTGCTAG
Protein sequence

>Msa1281500

MPGKPETDDWRIKHSEQVQLPSSIYSHHQPWWLENGSKPSSTDQLNSSIMNDVTHSEPLVSPSLSLTDNSGGDVAKEHRNIKHALSSTAFTMDKHLGPNSQTELVGHSIVLTSPYSNAQFGQILNAYGQQAMMNPQLYQMHHARMLLPLKMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKVRKPYLHESRHQHALRRARGNGGRFLNTKKLEHNDSNAALEKGNNTGATSGTNNENQGSSNVSQHMHKMQGFNISYHDGNDFTALCHSQANGKQEGDFFGKKIESNGEDEGLCLIQLMMLYINGNSFLANGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPKAEECGINC*