Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1282720 | XP_003628014.1 | 97.377 | 305 | 8 | 0 | 1 | 305 | 1 | 305 | 0.0 | 613 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1282720 | sp|Q2YDP3|NC2A_BOVIN | 45.185 | 135 | 71 | 1 | 2 | 136 | 5 | 136 | 1.77e-31 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1282720 | G7LID3 | 97.377 | 305 | 8 | 0 | 1 | 305 | 1 | 305 | 0.0 | 613 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1282720 | TF | NF-YC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1282720 | MtrunA17_Chr8g0354151 | 97.377 | 305 | 8 | 0 | 1 | 305 | 1 | 305 | 0.0 | 613 |
| Msa1282720 | MtrunA17_Chr3g0081161 | 69.831 | 295 | 73 | 6 | 1 | 294 | 1 | 280 | 6.38e-128 | 366 |
| Msa1282720 | MtrunA17_Chr5g0441241 | 43.750 | 288 | 135 | 9 | 18 | 293 | 1 | 273 | 5.71e-51 | 169 |
| Msa1282720 | MtrunA17_Chr2g0288481 | 38.202 | 89 | 52 | 1 | 1 | 86 | 75 | 163 | 6.78e-12 | 64.3 |
| Msa1282720 | MtrunA17_Chr3g0132191 | 37.975 | 79 | 49 | 0 | 8 | 86 | 55 | 133 | 1.06e-11 | 63.5 |
| Msa1282720 | MtrunA17_Chr1g0191681 | 37.179 | 78 | 49 | 0 | 9 | 86 | 102 | 179 | 1.38e-11 | 63.5 |
| Msa1282720 | MtrunA17_Chr7g0272991 | 37.179 | 78 | 49 | 0 | 9 | 86 | 102 | 179 | 1.68e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1282720 | AT3G12480.1 | 47.588 | 311 | 117 | 9 | 1 | 294 | 1 | 282 | 2.10e-69 | 218 |
| Msa1282720 | AT5G19490.1 | 62.857 | 140 | 39 | 4 | 1 | 137 | 1 | 130 | 9.12e-51 | 169 |
| Msa1282720 | AT1G54830.2 | 38.462 | 78 | 48 | 0 | 9 | 86 | 71 | 148 | 6.11e-12 | 64.3 |
| Msa1282720 | AT1G54830.3 | 38.462 | 78 | 48 | 0 | 9 | 86 | 71 | 148 | 6.11e-12 | 64.3 |
| Msa1282720 | AT1G54830.1 | 38.462 | 78 | 48 | 0 | 9 | 86 | 71 | 148 | 6.11e-12 | 64.3 |
| Msa1282720 | AT5G63470.2 | 37.975 | 79 | 49 | 0 | 8 | 86 | 78 | 156 | 1.35e-11 | 63.9 |
| Msa1282720 | AT5G63470.1 | 37.975 | 79 | 49 | 0 | 8 | 86 | 78 | 156 | 1.35e-11 | 63.9 |
| Msa1282720 | AT1G08970.3 | 38.462 | 78 | 48 | 0 | 9 | 86 | 81 | 158 | 1.46e-11 | 63.5 |
| Msa1282720 | AT1G08970.4 | 38.462 | 78 | 48 | 0 | 9 | 86 | 81 | 158 | 1.46e-11 | 63.5 |
| Msa1282720 | AT1G08970.2 | 38.462 | 78 | 48 | 0 | 9 | 86 | 81 | 158 | 1.46e-11 | 63.5 |
| Msa1282720 | AT1G08970.1 | 38.462 | 78 | 48 | 0 | 9 | 86 | 81 | 158 | 1.46e-11 | 63.5 |
| Msa1282720 | AT3G48590.1 | 37.975 | 79 | 49 | 0 | 8 | 86 | 65 | 143 | 1.52e-11 | 63.5 |
| Msa1282720 | AT1G56170.1 | 38.462 | 78 | 48 | 0 | 9 | 86 | 77 | 154 | 5.61e-11 | 61.2 |
| Msa1282720 | AT1G56170.2 | 38.462 | 78 | 48 | 0 | 9 | 86 | 77 | 154 | 5.61e-11 | 61.2 |
Find 111 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTTGTATCTGTAGTATTT+TGG | 0.175216 | 8_3:+23461480 | None:intergenic |
| TGAACTTCCATCTTTGAAAA+AGG | 0.232386 | 8_3:+23460758 | None:intergenic |
| TGGCATTCAGATCAATATTA+AGG | 0.272737 | 8_3:+23461375 | None:intergenic |
| GGCTTCAGGATTAGCGGCTT+TGG | 0.273888 | 8_3:+23461292 | None:intergenic |
| AATGTCCCATTTGTTTAATC+TGG | 0.276795 | 8_3:-23460960 | Msa1282720:three_prime_UTR |
| AGAACAGCAACATTATTCTT+TGG | 0.296672 | 8_3:+23461422 | None:intergenic |
| CAGTCATCATGAAGAAATTC+CGG | 0.308338 | 8_3:-23461231 | Msa1282720:CDS |
| TCACAAATGCAATGAATTCA+TGG | 0.326874 | 8_3:+23463112 | None:intergenic |
| GAACGAAAATGATGACAAAA+AGG | 0.328849 | 8_3:-23461348 | Msa1282720:CDS |
| AAAATAAAATTTACTACATA+TGG | 0.332756 | 8_3:+23460856 | None:intergenic |
| GCTTCAGGATTAGCGGCTTT+GGG | 0.341876 | 8_3:+23461293 | None:intergenic |
| GGTATCGAGCTTCTTCTTCA+TGG | 0.346522 | 8_3:+23464327 | None:intergenic |
| CACGAACCAGATTAAACAAA+TGG | 0.367554 | 8_3:+23460954 | None:intergenic |
| CCTTCTATTCCAGCTTGAGT+TGG | 0.372989 | 8_3:-23461642 | Msa1282720:intron |
| ATTCATTACAGCTAAAGCTT+TGG | 0.394482 | 8_3:-23463198 | Msa1282720:intron |
| GATCTCATCGCGTTGACCTT+AGG | 0.399268 | 8_3:-23464436 | Msa1282720:five_prime_UTR |
| AAGGGTAAATTGTAGTCTTC+GGG | 0.401128 | 8_3:-23461109 | Msa1282720:exon |
| CTTCTATTCCAGCTTGAGTT+GGG | 0.411737 | 8_3:-23461641 | Msa1282720:intron |
| AGGGGAAGAGGCCGAGGTAG+AGG | 0.414973 | 8_3:-23461599 | Msa1282720:CDS |
| AGCAACTCACAAACTAAAAC+AGG | 0.424990 | 8_3:+23463289 | None:intergenic |
| GAAGGGTAAATTGTAGTCTT+CGG | 0.439457 | 8_3:-23461110 | Msa1282720:exon |
| TCATGATGACTGCTGTCTGT+TGG | 0.443464 | 8_3:+23461242 | None:intergenic |
| CAGCACCACCAGCATCAGTA+TGG | 0.445315 | 8_3:+23462282 | None:intergenic |
| AGAGGCCGAGGTAGAGGAAG+AGG | 0.445372 | 8_3:-23461593 | Msa1282720:CDS |
| TCAAAGAGAGGGACATCATC+AGG | 0.446129 | 8_3:-23461543 | Msa1282720:CDS |
| GTTGGAGGAGGTTCAGAGAC+AGG | 0.449170 | 8_3:+23461260 | None:intergenic |
| CATCCATTCGCGTACCAAGC+TGG | 0.451375 | 8_3:+23461156 | None:intergenic |
| AATACTCACAGCAGGGAAAC+GGG | 0.451379 | 8_3:+23464306 | None:intergenic |
| TGAGAGTAACACGTTGGTTA+CGG | 0.453701 | 8_3:+23464546 | None:intergenic |
| AGTCATCATGAAGAAATTCC+GGG | 0.458892 | 8_3:-23461230 | Msa1282720:CDS |
| AGTGAGTCAGAGTTATCAAC+AGG | 0.460372 | 8_3:+23461398 | None:intergenic |
| TTCAACGCAATGTGTGAGAA+AGG | 0.461091 | 8_3:+23464519 | None:intergenic |
| CGAGGTAGAGGAAGAGGAAG+AGG | 0.463525 | 8_3:-23461587 | Msa1282720:CDS |
| ACAAATGTGGCTATACTTGA+TGG | 0.465433 | 8_3:-23461464 | Msa1282720:CDS |
| CCATGACCATGGCTGTAGTC+AGG | 0.470467 | 8_3:+23462305 | None:intergenic |
| ATCCATTCGCGTACCAAGCT+GGG | 0.471142 | 8_3:+23461157 | None:intergenic |
| CGGCCTCTTCCCCTACCAGT+AGG | 0.471290 | 8_3:+23461608 | None:intergenic |
| AGAGGAAGAGGACGAGGTCG+AGG | 0.473350 | 8_3:-23461575 | Msa1282720:CDS |
| AAATACTCACAGCAGGGAAA+CGG | 0.474814 | 8_3:+23464305 | None:intergenic |
| TAAATTGTAGTCTTCGGGAG+GGG | 0.475260 | 8_3:-23461104 | Msa1282720:three_prime_UTR |
| ATAACATGTCTTATGTTGAC+TGG | 0.479084 | 8_3:-23460999 | Msa1282720:three_prime_UTR |
| TGATGACTGCTGTCTGTTGG+AGG | 0.488755 | 8_3:+23461245 | None:intergenic |
| ATGAAATAACTCTTCAAAGA+GGG | 0.491656 | 8_3:-23463142 | Msa1282720:CDS |
| GGCAAGCTGCATCGAATCAA+TGG | 0.495075 | 8_3:+23461178 | None:intergenic |
| GAAGAGTTATTTCATAAGTA+CGG | 0.508808 | 8_3:+23463150 | None:intergenic |
| AGATCAGAAGAAGTAGAAGA+AGG | 0.512565 | 8_3:+23464369 | None:intergenic |
| TTGGGCCACACTAGCCCTAC+TGG | 0.513050 | 8_3:-23461623 | Msa1282720:CDS |
| CCTTTCTGAGGTGGACAAGA+TGG | 0.513246 | 8_3:-23461201 | Msa1282720:CDS |
| AGCCCTACTGGTAGGGGAAG+AGG | 0.516467 | 8_3:-23461611 | Msa1282720:CDS |
| GAAGAGAAGAATTGCTCCTA+AGG | 0.517104 | 8_3:+23464420 | None:intergenic |
| CCACACTAGCCCTACTGGTA+GGG | 0.519565 | 8_3:-23461618 | Msa1282720:CDS |
| TCCGGGCTGGTCCCTTTCTG+AGG | 0.520532 | 8_3:-23461213 | Msa1282720:CDS |
| AAATTGTAGTCTTCGGGAGG+GGG | 0.520601 | 8_3:-23461103 | Msa1282720:three_prime_UTR |
| GATGAAGATTATGACGAGGA+AGG | 0.523023 | 8_3:-23461128 | Msa1282720:CDS |
| TAATGTATTTGACTTTCTGA+AGG | 0.523769 | 8_3:-23462345 | Msa1282720:CDS |
| GGGCTGGTCCCTTTCTGAGG+TGG | 0.523889 | 8_3:-23461210 | Msa1282720:CDS |
| CAACATAAGACATGTTATGA+TGG | 0.524621 | 8_3:+23461004 | None:intergenic |
| TGGCTAACTTGCTGAACAGA+AGG | 0.535919 | 8_3:+23461500 | None:intergenic |
| CCCTACCAGTAGGGCTAGTG+TGG | 0.536396 | 8_3:+23461618 | None:intergenic |
| CCATCTTGTCCACCTCAGAA+AGG | 0.536812 | 8_3:+23461201 | None:intergenic |
| ACGAACCAGATTAAACAAAT+GGG | 0.537114 | 8_3:+23460955 | None:intergenic |
| GTTAAGACTTGCAGTTCCAA+TGG | 0.542652 | 8_3:+23460822 | None:intergenic |
| ACTGGTAGGGGAAGAGGCCG+AGG | 0.543075 | 8_3:-23461605 | Msa1282720:CDS |
| ATGCAAGCTGATGAAGATGT+TGG | 0.543982 | 8_3:-23463331 | Msa1282720:CDS |
| CATCTTGTCCACCTCAGAAA+GGG | 0.544706 | 8_3:+23461202 | None:intergenic |
| CAGTGATGAAGAAGCTAAGA+GGG | 0.545305 | 8_3:-23462121 | Msa1282720:CDS |
| TTGGAGGAGGTTCAGAGACA+GGG | 0.547073 | 8_3:+23461261 | None:intergenic |
| TGCCCAGCTTGGTACGCGAA+TGG | 0.547995 | 8_3:-23461159 | Msa1282720:CDS |
| TGACTGCTGTCTGTTGGAGG+AGG | 0.548420 | 8_3:+23461248 | None:intergenic |
| GTAGAAGAAGGAGAGTAAGA+AGG | 0.549279 | 8_3:+23464381 | None:intergenic |
| GGTCATGGCCATACTGATGC+TGG | 0.551049 | 8_3:-23462290 | Msa1282720:CDS |
| CTCTTCCTCTTCCTCTACCT+CGG | 0.552926 | 8_3:+23461588 | None:intergenic |
| ATTAGCGGCTTCAGGATTAG+CGG | 0.555789 | 8_3:+23461286 | None:intergenic |
| CATGTTTGCAGGAAAGCTGC+AGG | 0.556670 | 8_3:-23462159 | Msa1282720:intron |
| ACAGTGATGAAGAAGCTAAG+AGG | 0.558884 | 8_3:-23462122 | Msa1282720:CDS |
| CCACACTGCTCTAAAACCAT+TGG | 0.560641 | 8_3:-23464584 | Msa1282720:five_prime_UTR |
| AGGAAAGCTGCAGGTGATGA+TGG | 0.561033 | 8_3:-23462150 | Msa1282720:CDS |
| ATGAAGATTATGACGAGGAA+GGG | 0.569841 | 8_3:-23461127 | Msa1282720:CDS |
| TGAAATGAAGATATATAGAG+AGG | 0.575964 | 8_3:+23464627 | None:intergenic |
| CCTGACTACAGCCATGGTCA+TGG | 0.579794 | 8_3:-23462305 | Msa1282720:CDS |
| GGCCTCTTCCCCTACCAGTA+GGG | 0.586705 | 8_3:+23461609 | None:intergenic |
| TAACATGTCTTATGTTGACT+GGG | 0.587051 | 8_3:-23460998 | Msa1282720:three_prime_UTR |
| AGAGGAAGAGGAAGAGGACG+AGG | 0.587613 | 8_3:-23461581 | Msa1282720:CDS |
| TGTGGAATGGATCGAAGTTG+TGG | 0.588324 | 8_3:+23464602 | None:intergenic |
| CACACTAGCCCTACTGGTAG+GGG | 0.591865 | 8_3:-23461617 | Msa1282720:CDS |
| ATCATGAAGAAATTCCGGGC+TGG | 0.593923 | 8_3:-23461226 | Msa1282720:CDS |
| ACCTCAGAAAGGGACCAGCC+CGG | 0.596293 | 8_3:+23461212 | None:intergenic |
| TATGAAATAACTCTTCAAAG+AGG | 0.600363 | 8_3:-23463143 | Msa1282720:CDS |
| GGTCAACGCGATGAGATCAA+AGG | 0.600584 | 8_3:+23464441 | None:intergenic |
| AGAAGCTAAGAGGGGCAAGA+TGG | 0.603158 | 8_3:-23462112 | Msa1282720:intron |
| TGAAATAACTCTTCAAAGAG+GGG | 0.609065 | 8_3:-23463141 | Msa1282720:CDS |
| GGACGAGCTATTCAAAGAGA+GGG | 0.624122 | 8_3:-23461554 | Msa1282720:CDS |
| AGAAGGACAAGGCTCAGACT+CGG | 0.625318 | 8_3:+23461517 | None:intergenic |
| AGGACGAGCTATTCAAAGAG+AGG | 0.625357 | 8_3:-23461555 | Msa1282720:CDS |
| TCTGAAGGATGTAGTCAGCA+AGG | 0.625572 | 8_3:-23462330 | Msa1282720:CDS |
| AAGGTTCCTGACTACAGCCA+TGG | 0.627628 | 8_3:-23462311 | Msa1282720:CDS |
| GGTAAATTGTAGTCTTCGGG+AGG | 0.631997 | 8_3:-23461106 | Msa1282720:exon |
| GTAAATTGTAGTCTTCGGGA+GGG | 0.637584 | 8_3:-23461105 | Msa1282720:exon |
| TTTCATAAGTACGGTCACAA+AGG | 0.638025 | 8_3:+23463159 | None:intergenic |
| CATCAGTATGGCCATGACCA+TGG | 0.639178 | 8_3:+23462294 | None:intergenic |
| AACATTGATATACAATACAC+AGG | 0.639293 | 8_3:+23460879 | None:intergenic |
| GGTTTCTGAGAGTAACACGT+TGG | 0.649995 | 8_3:+23464540 | None:intergenic |
| GCCACACTAGCCCTACTGGT+AGG | 0.654203 | 8_3:-23461619 | Msa1282720:CDS |
| CATGGCCATACTGATGCTGG+TGG | 0.661901 | 8_3:-23462287 | Msa1282720:CDS |
| TGGAGGAGGTTCAGAGACAG+GGG | 0.663154 | 8_3:+23461262 | None:intergenic |
| AGATGTTGGAAAGATAGCAT+TGG | 0.667342 | 8_3:-23463317 | Msa1282720:CDS |
| AAATACTACAGATACAAATG+TGG | 0.667589 | 8_3:-23461477 | Msa1282720:CDS |
| AGATGATGAAGATTATGACG+AGG | 0.685761 | 8_3:-23461132 | Msa1282720:CDS |
| ACTTGCTGAACAGAAGGACA+AGG | 0.703007 | 8_3:+23461506 | None:intergenic |
| GGAGGAGGTTCAGAGACAGG+GGG | 0.712756 | 8_3:+23461263 | None:intergenic |
| AGTGATGAAGAAGCTAAGAG+GGG | 0.724764 | 8_3:-23462120 | Msa1282720:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAAATTTCCAAAAATT+AGG | + | chr8_3:23461285-23461304 | None:intergenic | 10.0% |
| !!! | TTGGAAATTTAATTTTTTTT+TGG | - | chr8_3:23461290-23461309 | Msa1282720:CDS | 10.0% |
| !!! | TGGAAATTTAATTTTTTTTT+GGG | - | chr8_3:23461291-23461310 | Msa1282720:CDS | 10.0% |
| !!! | TTTAATTTTAACCTAATTTT+TGG | - | chr8_3:23461467-23461486 | Msa1282720:CDS | 10.0% |
| !! | AAAATAAAATTTACTACATA+TGG | + | chr8_3:23464529-23464548 | None:intergenic | 10.0% |
| !!! | TTTGTTATTTTATACTGTTT+TGG | - | chr8_3:23461131-23461150 | Msa1282720:CDS | 15.0% |
| !!! | TTTTGATGATTTTTATTATG+TGG | - | chr8_3:23461168-23461187 | Msa1282720:CDS | 15.0% |
| !!! | TTTGATGATTTTTATTATGT+GGG | - | chr8_3:23461169-23461188 | Msa1282720:CDS | 15.0% |
| !!! | CTTAATTAAGATAACATTTT+TGG | - | chr8_3:23461239-23461258 | Msa1282720:CDS | 15.0% |
| !!! | TTTAATTTTGACCTAATTTT+TGG | - | chr8_3:23461271-23461290 | Msa1282720:CDS | 15.0% |
| !! | TCAAATCAAATTATCTAAAA+AGG | + | chr8_3:23462619-23462638 | None:intergenic | 15.0% |
| !! | AAAAAAAATAATAGACTACT+TGG | + | chr8_3:23462916-23462935 | None:intergenic | 15.0% |
| !! | AACAAAAAAGATCAAAACTT+TGG | + | chr8_3:23461117-23461136 | None:intergenic | 20.0% |
| !! | TTTATGTGCTTAATTGTATT+TGG | - | chr8_3:23461208-23461227 | Msa1282720:CDS | 20.0% |
| !!! | TACTTTTGCTTCATTTTATT+TGG | - | chr8_3:23461425-23461444 | Msa1282720:CDS | 20.0% |
| !!! | TCATTTTATTTGGTAGTTTT+TGG | - | chr8_3:23461435-23461454 | Msa1282720:CDS | 20.0% |
| !! | AAGTACAATATCCAAAAATT+AGG | + | chr8_3:23461481-23461500 | None:intergenic | 20.0% |
| !! | TGAACCTAAAAATTTCATAT+TGG | - | chr8_3:23461741-23461760 | Msa1282720:intron | 20.0% |
| !!! | AACTCCAATATGAAATTTTT+AGG | + | chr8_3:23461748-23461767 | None:intergenic | 20.0% |
| !! | AAATCCAAAATTGGTATTAA+CGG | + | chr8_3:23461953-23461972 | None:intergenic | 20.0% |
| !! | AATTCAAAGAAATCCAAAAT+TGG | + | chr8_3:23461962-23461981 | None:intergenic | 20.0% |
| !!! | TTTTATTGAACATGTGAAAA+TGG | - | chr8_3:23462643-23462662 | Msa1282720:intron | 20.0% |
| !! | TCAAAAAATTCATAAGCATT+TGG | + | chr8_3:23462747-23462766 | None:intergenic | 20.0% |
| !! | TAGTTAAAATTAATCAGTTC+AGG | + | chr8_3:23462878-23462897 | None:intergenic | 20.0% |
| !! | TGTTTAAGAAATTAAAACAC+GGG | + | chr8_3:23463329-23463348 | None:intergenic | 20.0% |
| !! | GTGTTTAAGAAATTAAAACA+CGG | + | chr8_3:23463330-23463349 | None:intergenic | 20.0% |
| !!! | TTGTTTTTTATGGAGAAAAA+AGG | + | chr8_3:23463408-23463427 | None:intergenic | 20.0% |
| !!! | TTTTTTCTCCATAAAAAACA+AGG | - | chr8_3:23463407-23463426 | Msa1282720:intron | 20.0% |
| !!! | ATATACAACCTTGTTTTTTA+TGG | + | chr8_3:23463418-23463437 | None:intergenic | 20.0% |
| !!! | TGAAAGTATTGTTGTAATTT+GGG | + | chr8_3:23463459-23463478 | None:intergenic | 20.0% |
| !!! | ATGCTTGATTATTGATTTGA+TGG | - | chr8_3:23461528-23461547 | Msa1282720:CDS | 25.0% |
| !!! | TGATGTTATCATTTTTTAGC+TGG | - | chr8_3:23461559-23461578 | Msa1282720:CDS | 25.0% |
| !!! | TTACCTTTTTTGTAGTTGTT+TGG | - | chr8_3:23461776-23461795 | Msa1282720:intron | 25.0% |
| !! | GAAGAGTTATTTCATAAGTA+CGG | + | chr8_3:23462235-23462254 | None:intergenic | 25.0% |
| ! | TATGAAATAACTCTTCAAAG+AGG | - | chr8_3:23462239-23462258 | Msa1282720:intron | 25.0% |
| ! | ATGAAATAACTCTTCAAAGA+GGG | - | chr8_3:23462240-23462259 | Msa1282720:intron | 25.0% |
| ! | AAGATTATCATCTACAACAA+TGG | - | chr8_3:23462554-23462573 | Msa1282720:intron | 25.0% |
| ! | TAAAAAGGAAAACATCTAGA+AGG | + | chr8_3:23462604-23462623 | None:intergenic | 25.0% |
| ! | AAAATTCATAAGCATTTGGT+TGG | + | chr8_3:23462743-23462762 | None:intergenic | 25.0% |
| ! | TTCTAATATCTGTTCTTGTA+TGG | - | chr8_3:23462781-23462800 | Msa1282720:intron | 25.0% |
| ! | TGTTGAAGATAAAATGAGTT+TGG | + | chr8_3:23462953-23462972 | None:intergenic | 25.0% |
| !! | TAATGTATTTGACTTTCTGA+AGG | - | chr8_3:23463037-23463056 | Msa1282720:intron | 25.0% |
| ! | TAACTACATGTATATCAGAA+AGG | + | chr8_3:23463188-23463207 | None:intergenic | 25.0% |
| ! | GTTTAAGAAATTAAAACACG+GGG | + | chr8_3:23463328-23463347 | None:intergenic | 25.0% |
| !!! | GTGAAAGTATTGTTGTAATT+TGG | + | chr8_3:23463460-23463479 | None:intergenic | 25.0% |
| ! | ATTTGTCGAAATTTCATGTT+TGG | - | chr8_3:23463497-23463516 | Msa1282720:intron | 25.0% |
| !! | AATTTCATGTTTGGAATACT+TGG | - | chr8_3:23463506-23463525 | Msa1282720:intron | 25.0% |
| !!! | AATTGCTTTTTCCTAGAATA+AGG | + | chr8_3:23463690-23463709 | None:intergenic | 25.0% |
| !! | CATTTGTATCTGTAGTATTT+TGG | + | chr8_3:23463905-23463924 | None:intergenic | 25.0% |
| ! | AAATACTACAGATACAAATG+TGG | - | chr8_3:23463905-23463924 | Msa1282720:intron | 25.0% |
| ! | AACATTGATATACAATACAC+AGG | + | chr8_3:23464506-23464525 | None:intergenic | 25.0% |
| !! | ATTTTATGCATTCAAACCAT+TGG | - | chr8_3:23464544-23464563 | Msa1282720:five_prime_UTR | 25.0% |
| !!! | AGTTAAACCTTTTTCAAAGA+TGG | - | chr8_3:23464617-23464636 | Msa1282720:five_prime_UTR | 25.0% |
| TACCTTTGGATCTGAAAAAT+GGG | - | chr8_3:23460916-23460935 | Msa1282720:three_prime_UTR | 30.0% | |
| AGCTTGATTAATGAAGTTGA+TGG | - | chr8_3:23461328-23461347 | Msa1282720:CDS | 30.0% | |
| ! | GCTTGATTAATGAAGTTGAT+GGG | - | chr8_3:23461329-23461348 | Msa1282720:CDS | 30.0% |
| !! | CTTGATTAATGAAGTTGATG+GGG | - | chr8_3:23461330-23461349 | Msa1282720:CDS | 30.0% |
| TTAGCTGCTTAGCTTAATTA+TGG | - | chr8_3:23461396-23461415 | Msa1282720:CDS | 30.0% | |
| !!! | TTTTAGGTTCATAGACTATG+TGG | + | chr8_3:23461732-23461751 | None:intergenic | 30.0% |
| AAGCCAAACAACTACAAAAA+AGG | + | chr8_3:23461782-23461801 | None:intergenic | 30.0% | |
| ! | GTAGTTGTTTGGCTTAATTT+AGG | - | chr8_3:23461787-23461806 | Msa1282720:intron | 30.0% |
| AGAAACACTATTTGATGTGT+TGG | - | chr8_3:23461994-23462013 | Msa1282720:intron | 30.0% | |
| TGTTGGAAACATAAATTTGC+AGG | - | chr8_3:23462011-23462030 | Msa1282720:intron | 30.0% | |
| ATTCATTACAGCTAAAGCTT+TGG | - | chr8_3:23462184-23462203 | Msa1282720:intron | 30.0% | |
| TGAAATAACTCTTCAAAGAG+GGG | - | chr8_3:23462241-23462260 | Msa1282720:intron | 30.0% | |
| TCACAAATGCAATGAATTCA+TGG | + | chr8_3:23462273-23462292 | None:intergenic | 30.0% | |
| ! | GTTAGTTTGACCACTAAAAT+GGG | + | chr8_3:23462330-23462349 | None:intergenic | 30.0% |
| ! | AGTTAGTTTGACCACTAAAA+TGG | + | chr8_3:23462331-23462350 | None:intergenic | 30.0% |
| ! | ATTATTTGATCAAGCATTGC+AGG | + | chr8_3:23462838-23462857 | None:intergenic | 30.0% |
| ATGCTTGATCAAATAATGCA+CGG | - | chr8_3:23462841-23462860 | Msa1282720:intron | 30.0% | |
| AAATAATAGACTACTTGGAC+AGG | + | chr8_3:23462911-23462930 | None:intergenic | 30.0% | |
| ATAAAATGAGTTTGGAAGGA+AGG | + | chr8_3:23462945-23462964 | None:intergenic | 30.0% | |
| GAAGATAAAATGAGTTTGGA+AGG | + | chr8_3:23462949-23462968 | None:intergenic | 30.0% | |
| !! | TTCAAACCTTCTTTTTGGAA+TGG | + | chr8_3:23463135-23463154 | None:intergenic | 30.0% |
| ! | AAGACTTCAAACCTTCTTTT+TGG | + | chr8_3:23463140-23463159 | None:intergenic | 30.0% |
| ACATGAAATTTCGACAAATG+AGG | + | chr8_3:23463496-23463515 | None:intergenic | 30.0% | |
| ATTCATTCCTACAAGATTTC+AGG | + | chr8_3:23463627-23463646 | None:intergenic | 30.0% | |
| ! | CTTTTTCCTAGAATAAGGAA+TGG | + | chr8_3:23463685-23463704 | None:intergenic | 30.0% |
| AGAACAGCAACATTATTCTT+TGG | + | chr8_3:23463963-23463982 | None:intergenic | 30.0% | |
| TGGCATTCAGATCAATATTA+AGG | + | chr8_3:23464010-23464029 | None:intergenic | 30.0% | |
| ! | GTCATCATTTTCGTTCATAT+TGG | + | chr8_3:23464030-23464049 | None:intergenic | 30.0% |
| GAACGAAAATGATGACAAAA+AGG | - | chr8_3:23464034-23464053 | Msa1282720:intron | 30.0% | |
| CAACATAAGACATGTTATGA+TGG | + | chr8_3:23464381-23464400 | None:intergenic | 30.0% | |
| ATAACATGTCTTATGTTGAC+TGG | - | chr8_3:23464383-23464402 | Msa1282720:five_prime_UTR | 30.0% | |
| ! | TAACATGTCTTATGTTGACT+GGG | - | chr8_3:23464384-23464403 | Msa1282720:five_prime_UTR | 30.0% |
| ! | TTATGTTGACTGGGAAAAAA+AGG | - | chr8_3:23464393-23464412 | Msa1282720:five_prime_UTR | 30.0% |
| ! | TATGTTGACTGGGAAAAAAA+GGG | - | chr8_3:23464394-23464413 | Msa1282720:five_prime_UTR | 30.0% |
| AATGTCCCATTTGTTTAATC+TGG | - | chr8_3:23464422-23464441 | Msa1282720:five_prime_UTR | 30.0% | |
| ACGAACCAGATTAAACAAAT+GGG | + | chr8_3:23464430-23464449 | None:intergenic | 30.0% | |
| !!! | TGTTAGCTTGTTGTACTTTT+AGG | - | chr8_3:23464480-23464499 | Msa1282720:five_prime_UTR | 30.0% |
| ! | TGAACTTCCATCTTTGAAAA+AGG | + | chr8_3:23464627-23464646 | None:intergenic | 30.0% |
| ! | TGAAGTGTGTTTTGTACCTT+TGG | - | chr8_3:23460902-23460921 | Msa1282720:three_prime_UTR | 35.0% |
| GTACCTTTGGATCTGAAAAA+TGG | - | chr8_3:23460915-23460934 | Msa1282720:three_prime_UTR | 35.0% | |
| !! | AACCCATTTTTCAGATCCAA+AGG | + | chr8_3:23460921-23460940 | None:intergenic | 35.0% |
| AGATCAGAAGAAGTAGAAGA+AGG | + | chr8_3:23461016-23461035 | None:intergenic | 35.0% | |
| AACAGAAAATACTCACAGCA+GGG | + | chr8_3:23461086-23461105 | None:intergenic | 35.0% | |
| AAACAGAAAATACTCACAGC+AGG | + | chr8_3:23461087-23461106 | None:intergenic | 35.0% | |
| !!! | CATTTTTTAGCTGGTTAGCT+TGG | - | chr8_3:23461568-23461587 | Msa1282720:CDS | 35.0% |
| ACATGTTGTTATGCTCAATG+TGG | + | chr8_3:23461645-23461664 | None:intergenic | 35.0% | |
| !!! | GTTATGTTGACTTTTGTGTC+CGG | + | chr8_3:23461843-23461862 | None:intergenic | 35.0% |
| CCAAAATTGGTATTAACGGT+GGG | + | chr8_3:23461949-23461968 | None:intergenic | 35.0% | |
| TCCAAAATTGGTATTAACGG+TGG | + | chr8_3:23461950-23461969 | None:intergenic | 35.0% | |
| GAAACATAAATTTGCAGGCT+CGG | - | chr8_3:23462016-23462035 | Msa1282720:intron | 35.0% | |
| AGATGTTGGAAAGATAGCAT+TGG | - | chr8_3:23462065-23462084 | Msa1282720:intron | 35.0% | |
| AGCAACTCACAAACTAAAAC+AGG | + | chr8_3:23462096-23462115 | None:intergenic | 35.0% | |
| TTTCATAAGTACGGTCACAA+AGG | + | chr8_3:23462226-23462245 | None:intergenic | 35.0% | |
| ! | TCTCTGATTTCCCATTTTAG+TGG | - | chr8_3:23462317-23462336 | Msa1282720:CDS | 35.0% |
| ACTAACTCAAGAAATCAGAG+CGG | - | chr8_3:23462344-23462363 | Msa1282720:CDS | 35.0% | |
| TGAACTCAATTTATCGTCAG+TGG | - | chr8_3:23462482-23462501 | Msa1282720:intron | 35.0% | |
| ATCTGTTCTTGTATGGCTTA+AGG | - | chr8_3:23462788-23462807 | Msa1282720:intron | 35.0% | |
| GTTTACATTTGACACTCGTT+AGG | + | chr8_3:23462991-23463010 | None:intergenic | 35.0% | |
| ATCAGACCATTCCAAAAAGA+AGG | - | chr8_3:23463126-23463145 | Msa1282720:CDS | 35.0% | |
| TGTGATTGATACTGACGAAA+TGG | + | chr8_3:23463362-23463381 | None:intergenic | 35.0% | |
| ! | TTGTCTTTTGCTTGCACAAA+TGG | + | chr8_3:23463603-23463622 | None:intergenic | 35.0% |
| AGACAATCCTGAAATCTTGT+AGG | - | chr8_3:23463617-23463636 | Msa1282720:intron | 35.0% | |
| TTCAAGCCATTCCTTATTCT+AGG | - | chr8_3:23463676-23463695 | Msa1282720:intron | 35.0% | |
| ACAAATGTGGCTATACTTGA+TGG | - | chr8_3:23463918-23463937 | Msa1282720:intron | 35.0% | |
| CAGTCATCATGAAGAAATTC+CGG | - | chr8_3:23464151-23464170 | Msa1282720:intron | 35.0% | |
| AGTCATCATGAAGAAATTCC+GGG | - | chr8_3:23464152-23464171 | Msa1282720:intron | 35.0% | |
| AGATGATGAAGATTATGACG+AGG | - | chr8_3:23464250-23464269 | Msa1282720:intron | 35.0% | |
| ATGAAGATTATGACGAGGAA+GGG | - | chr8_3:23464255-23464274 | Msa1282720:intron | 35.0% | |
| GAAGGGTAAATTGTAGTCTT+CGG | - | chr8_3:23464272-23464291 | Msa1282720:intron | 35.0% | |
| AAGGGTAAATTGTAGTCTTC+GGG | - | chr8_3:23464273-23464292 | Msa1282720:intron | 35.0% | |
| CACGAACCAGATTAAACAAA+TGG | + | chr8_3:23464431-23464450 | None:intergenic | 35.0% | |
| ! | TGGTTACGGAGTTTTTGTGA+CGG | + | chr8_3:23460825-23460844 | None:intergenic | 40.0% |
| ! | TGAGAGTAACACGTTGGTTA+CGG | + | chr8_3:23460839-23460858 | None:intergenic | 40.0% |
| TTCAACGCAATGTGTGAGAA+AGG | + | chr8_3:23460866-23460885 | None:intergenic | 40.0% | |
| GAAGAGAAGAATTGCTCCTA+AGG | + | chr8_3:23460965-23460984 | None:intergenic | 40.0% | |
| GTAGAAGAAGGAGAGTAAGA+AGG | + | chr8_3:23461004-23461023 | None:intergenic | 40.0% | |
| AAATACTCACAGCAGGGAAA+CGG | + | chr8_3:23461080-23461099 | None:intergenic | 40.0% | |
| !! | TTTAGCTGGTTAGCTTGGTT+TGG | - | chr8_3:23461573-23461592 | Msa1282720:CDS | 40.0% |
| !! | TTAGCTGGTTAGCTTGGTTT+GGG | - | chr8_3:23461574-23461593 | Msa1282720:CDS | 40.0% |
| AATCCAACATGTGTCAGTGT+TGG | + | chr8_3:23461901-23461920 | None:intergenic | 40.0% | |
| CTGACACATGTTGGATTCTT+TGG | - | chr8_3:23461904-23461923 | Msa1282720:intron | 40.0% | |
| ! | CCCACCGTTAATACCAATTT+TGG | - | chr8_3:23461946-23461965 | Msa1282720:intron | 40.0% |
| ATGCAAGCTGATGAAGATGT+TGG | - | chr8_3:23462051-23462070 | Msa1282720:intron | 40.0% | |
| ! | AACTTTAAGCTGCTGTTTGC+TGG | - | chr8_3:23462140-23462159 | Msa1282720:CDS | 40.0% |
| TTATCGTCAGTGGTCATTGT+TGG | - | chr8_3:23462492-23462511 | Msa1282720:intron | 40.0% | |
| TGATCAAATAATGCACGGCT+TGG | - | chr8_3:23462846-23462865 | Msa1282720:intron | 40.0% | |
| GATCAAATAATGCACGGCTT+GGG | - | chr8_3:23462847-23462866 | Msa1282720:intron | 40.0% | |
| CTTTCCTGCAAACATGGTTT+AGG | + | chr8_3:23463219-23463238 | None:intergenic | 40.0% | |
| ACAGTGATGAAGAAGCTAAG+AGG | - | chr8_3:23463260-23463279 | Msa1282720:intron | 40.0% | |
| CAGTGATGAAGAAGCTAAGA+GGG | - | chr8_3:23463261-23463280 | Msa1282720:intron | 40.0% | |
| AGTGATGAAGAAGCTAAGAG+GGG | - | chr8_3:23463262-23463281 | Msa1282720:intron | 40.0% | |
| GGGGCTTTCACACTAATATA+AGG | + | chr8_3:23463309-23463328 | None:intergenic | 40.0% | |
| CTTCTATTCCAGCTTGAGTT+GGG | - | chr8_3:23463741-23463760 | Msa1282720:intron | 40.0% | |
| AGTGAGTCAGAGTTATCAAC+AGG | + | chr8_3:23463987-23464006 | None:intergenic | 40.0% | |
| GATGAAGATTATGACGAGGA+AGG | - | chr8_3:23464254-23464273 | Msa1282720:intron | 40.0% | |
| GTAAATTGTAGTCTTCGGGA+GGG | - | chr8_3:23464277-23464296 | Msa1282720:intron | 40.0% | |
| TAAATTGTAGTCTTCGGGAG+GGG | - | chr8_3:23464278-23464297 | Msa1282720:intron | 40.0% | |
| GTTAAGACTTGCAGTTCCAA+TGG | + | chr8_3:23464563-23464582 | None:intergenic | 40.0% | |
| TGTGGAATGGATCGAAGTTG+TGG | + | chr8_3:23460783-23460802 | None:intergenic | 45.0% | |
| !!! | GGTTTTAGAGCAGTGTGGAA+TGG | + | chr8_3:23460796-23460815 | None:intergenic | 45.0% |
| !!! | CCAATGGTTTTAGAGCAGTG+TGG | + | chr8_3:23460801-23460820 | None:intergenic | 45.0% |
| !! | CCACACTGCTCTAAAACCAT+TGG | - | chr8_3:23460798-23460817 | Msa1282720:three_prime_UTR | 45.0% |
| !!! | GAGTTTTTGTGACGGACCAA+TGG | + | chr8_3:23460817-23460836 | None:intergenic | 45.0% |
| ! | GGTTTCTGAGAGTAACACGT+TGG | + | chr8_3:23460845-23460864 | None:intergenic | 45.0% |
| ! | GGTATCGAGCTTCTTCTTCA+TGG | + | chr8_3:23461058-23461077 | None:intergenic | 45.0% |
| AATACTCACAGCAGGGAAAC+GGG | + | chr8_3:23461079-23461098 | None:intergenic | 45.0% | |
| TTGATGGGGTTTGAGTGATG+TGG | - | chr8_3:23461344-23461363 | Msa1282720:CDS | 45.0% | |
| TGATGGGGTTTGAGTGATGT+GGG | - | chr8_3:23461345-23461364 | Msa1282720:CDS | 45.0% | |
| TGTCCTACATCGACACATGT+TGG | - | chr8_3:23461695-23461714 | Msa1282720:intron | 45.0% | |
| ! | CATCCAACATGTGTCGATGT+AGG | + | chr8_3:23461701-23461720 | None:intergenic | 45.0% |
| TCATAGACTATGTGGCACTG+AGG | + | chr8_3:23461724-23461743 | None:intergenic | 45.0% | |
| GTGAAGCACACACACTATAC+CGG | - | chr8_3:23461821-23461840 | Msa1282720:intron | 45.0% | |
| GCATGTGTCAGTATCGTGTT+TGG | - | chr8_3:23461864-23461883 | Msa1282720:intron | 45.0% | |
| !! | CAGTATCGTGTTTGGTGTCT+AGG | - | chr8_3:23461872-23461891 | Msa1282720:intron | 45.0% |
| TGTCCAACACTGACACATGT+TGG | - | chr8_3:23461895-23461914 | Msa1282720:intron | 45.0% | |
| AGAGCGGTGTGTCTCTATAA+TGG | - | chr8_3:23462360-23462379 | Msa1282720:CDS | 45.0% | |
| CAATATCTGCAGCCAATGAG+CGG | - | chr8_3:23462674-23462693 | Msa1282720:intron | 45.0% | |
| TCTGAAGGATGTAGTCAGCA+AGG | - | chr8_3:23463052-23463071 | Msa1282720:intron | 45.0% | |
| TGCACCTAAACCATGTTTGC+AGG | - | chr8_3:23463212-23463231 | Msa1282720:intron | 45.0% | |
| CCAACTCAAGCTGGAATAGA+AGG | + | chr8_3:23463743-23463762 | None:intergenic | 45.0% | |
| CCTTCTATTCCAGCTTGAGT+TGG | - | chr8_3:23463740-23463759 | Msa1282720:intron | 45.0% | |
| AGGACGAGCTATTCAAAGAG+AGG | - | chr8_3:23463827-23463846 | Msa1282720:intron | 45.0% | |
| GGACGAGCTATTCAAAGAGA+GGG | - | chr8_3:23463828-23463847 | Msa1282720:intron | 45.0% | |
| TCAAAGAGAGGGACATCATC+AGG | - | chr8_3:23463839-23463858 | Msa1282720:intron | 45.0% | |
| ! | ACTTGCTGAACAGAAGGACA+AGG | + | chr8_3:23463879-23463898 | None:intergenic | 45.0% |
| !! | TGGCTAACTTGCTGAACAGA+AGG | + | chr8_3:23463885-23463904 | None:intergenic | 45.0% |
| ATTAGCGGCTTCAGGATTAG+CGG | + | chr8_3:23464099-23464118 | None:intergenic | 45.0% | |
| TCATGATGACTGCTGTCTGT+TGG | + | chr8_3:23464143-23464162 | None:intergenic | 45.0% | |
| ATCATGAAGAAATTCCGGGC+TGG | - | chr8_3:23464156-23464175 | Msa1282720:intron | 45.0% | |
| CATCTTGTCCACCTCAGAAA+GGG | + | chr8_3:23464183-23464202 | None:intergenic | 45.0% | |
| GGTAAATTGTAGTCTTCGGG+AGG | - | chr8_3:23464276-23464295 | Msa1282720:intron | 45.0% | |
| AAATTGTAGTCTTCGGGAGG+GGG | - | chr8_3:23464279-23464298 | Msa1282720:intron | 45.0% | |
| GGTCAACGCGATGAGATCAA+AGG | + | chr8_3:23460944-23460963 | None:intergenic | 50.0% | |
| ! | GATCTCATCGCGTTGACCTT+AGG | - | chr8_3:23460946-23460965 | Msa1282720:three_prime_UTR | 50.0% |
| TCGATGTAGGACACCTGACA+CGG | + | chr8_3:23461688-23461707 | None:intergenic | 50.0% | |
| TGTCACATGAGACCGCTCAT+TGG | + | chr8_3:23462689-23462708 | None:intergenic | 50.0% | |
| AAGGTTCCTGACTACAGCCA+TGG | - | chr8_3:23463071-23463090 | Msa1282720:intron | 50.0% | |
| CATCAGTATGGCCATGACCA+TGG | + | chr8_3:23463091-23463110 | None:intergenic | 50.0% | |
| CTGCAGCTTTCCTGCAAACA+TGG | + | chr8_3:23463225-23463244 | None:intergenic | 50.0% | |
| CATGTTTGCAGGAAAGCTGC+AGG | - | chr8_3:23463223-23463242 | Msa1282720:intron | 50.0% | |
| AGGAAAGCTGCAGGTGATGA+TGG | - | chr8_3:23463232-23463251 | Msa1282720:intron | 50.0% | |
| AGAAGCTAAGAGGGGCAAGA+TGG | - | chr8_3:23463270-23463289 | Msa1282720:intron | 50.0% | |
| CTCTTCCTCTTCCTCTACCT+CGG | + | chr8_3:23463797-23463816 | None:intergenic | 50.0% | |
| AGAAGGACAAGGCTCAGACT+CGG | + | chr8_3:23463868-23463887 | None:intergenic | 50.0% | |
| ! | GCTTCAGGATTAGCGGCTTT+GGG | + | chr8_3:23464092-23464111 | None:intergenic | 50.0% |
| TTCAGAGACAGGGGGATTAG+CGG | + | chr8_3:23464114-23464133 | None:intergenic | 50.0% | |
| TTGGAGGAGGTTCAGAGACA+GGG | + | chr8_3:23464124-23464143 | None:intergenic | 50.0% | |
| TGATGACTGCTGTCTGTTGG+AGG | + | chr8_3:23464140-23464159 | None:intergenic | 50.0% | |
| CCATCTTGTCCACCTCAGAA+AGG | + | chr8_3:23464184-23464203 | None:intergenic | 50.0% | |
| !! | CCTTTCTGAGGTGGACAAGA+TGG | - | chr8_3:23464181-23464200 | Msa1282720:intron | 50.0% |
| GGCAAGCTGCATCGAATCAA+TGG | + | chr8_3:23464207-23464226 | None:intergenic | 50.0% | |
| ATCCATTCGCGTACCAAGCT+GGG | + | chr8_3:23464228-23464247 | None:intergenic | 50.0% | |
| TCGTGTCTAGTGTCCGTGTC+AGG | - | chr8_3:23461672-23461691 | Msa1282720:intron | 55.0% | |
| CCATGACCATGGCTGTAGTC+AGG | + | chr8_3:23463080-23463099 | None:intergenic | 55.0% | |
| CCTGACTACAGCCATGGTCA+TGG | - | chr8_3:23463077-23463096 | Msa1282720:intron | 55.0% | |
| GGTCATGGCCATACTGATGC+TGG | - | chr8_3:23463092-23463111 | Msa1282720:intron | 55.0% | |
| CATGGCCATACTGATGCTGG+TGG | - | chr8_3:23463095-23463114 | Msa1282720:intron | 55.0% | |
| CAGCACCACCAGCATCAGTA+TGG | + | chr8_3:23463103-23463122 | None:intergenic | 55.0% | |
| TAGTGTGGCCCAACTCAAGC+TGG | + | chr8_3:23463752-23463771 | None:intergenic | 55.0% | |
| CCACACTAGCCCTACTGGTA+GGG | - | chr8_3:23463764-23463783 | Msa1282720:intron | 55.0% | |
| CACACTAGCCCTACTGGTAG+GGG | - | chr8_3:23463765-23463784 | Msa1282720:intron | 55.0% | |
| CGAGGTAGAGGAAGAGGAAG+AGG | - | chr8_3:23463795-23463814 | Msa1282720:intron | 55.0% | |
| AGAGGAAGAGGAAGAGGACG+AGG | - | chr8_3:23463801-23463820 | Msa1282720:intron | 55.0% | |
| ! | GGCTTCAGGATTAGCGGCTT+TGG | + | chr8_3:23464093-23464112 | None:intergenic | 55.0% |
| TGGAGGAGGTTCAGAGACAG+GGG | + | chr8_3:23464123-23464142 | None:intergenic | 55.0% | |
| GTTGGAGGAGGTTCAGAGAC+AGG | + | chr8_3:23464125-23464144 | None:intergenic | 55.0% | |
| TGACTGCTGTCTGTTGGAGG+AGG | + | chr8_3:23464137-23464156 | None:intergenic | 55.0% | |
| CATCCATTCGCGTACCAAGC+TGG | + | chr8_3:23464229-23464248 | None:intergenic | 55.0% | |
| TTGGGCCACACTAGCCCTAC+TGG | - | chr8_3:23463759-23463778 | Msa1282720:intron | 60.0% | |
| GCCACACTAGCCCTACTGGT+AGG | - | chr8_3:23463763-23463782 | Msa1282720:intron | 60.0% | |
| ! | CCCTACCAGTAGGGCTAGTG+TGG | + | chr8_3:23463767-23463786 | None:intergenic | 60.0% |
| AGCCCTACTGGTAGGGGAAG+AGG | - | chr8_3:23463771-23463790 | Msa1282720:intron | 60.0% | |
| GGCCTCTTCCCCTACCAGTA+GGG | + | chr8_3:23463776-23463795 | None:intergenic | 60.0% | |
| AGAGGCCGAGGTAGAGGAAG+AGG | - | chr8_3:23463789-23463808 | Msa1282720:intron | 60.0% | |
| AGAGGAAGAGGACGAGGTCG+AGG | - | chr8_3:23463807-23463826 | Msa1282720:intron | 60.0% | |
| ! | ACAGGGGGATTAGCGGCTTC+AGG | + | chr8_3:23464107-23464126 | None:intergenic | 60.0% |
| GGAGGAGGTTCAGAGACAGG+GGG | + | chr8_3:23464122-23464141 | None:intergenic | 60.0% | |
| ACCTCAGAAAGGGACCAGCC+CGG | + | chr8_3:23464173-23464192 | None:intergenic | 60.0% | |
| TCGATGCAGCTTGCCCAGCT+TGG | - | chr8_3:23464212-23464231 | Msa1282720:intron | 60.0% | |
| TGCCCAGCTTGGTACGCGAA+TGG | - | chr8_3:23464223-23464242 | Msa1282720:intron | 60.0% | |
| CGGCCTCTTCCCCTACCAGT+AGG | + | chr8_3:23463777-23463796 | None:intergenic | 65.0% | |
| ACTGGTAGGGGAAGAGGCCG+AGG | - | chr8_3:23463777-23463796 | Msa1282720:intron | 65.0% | |
| AGGGGAAGAGGCCGAGGTAG+AGG | - | chr8_3:23463783-23463802 | Msa1282720:intron | 65.0% | |
| !! | TCCGGGCTGGTCCCTTTCTG+AGG | - | chr8_3:23464169-23464188 | Msa1282720:intron | 65.0% |
| !! | GGGCTGGTCCCTTTCTGAGG+TGG | - | chr8_3:23464172-23464191 | Msa1282720:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 23460757 | 23464647 | 23460757 | ID=Msa1282720;Name=Msa1282720 |
| chr8_3 | mRNA | 23460757 | 23464647 | 23460757 | ID=Msa1282720-mRNA-1;Parent=Msa1282720;Name=Msa1282720-mRNA-1;_AED=0.04;_eAED=0.04;_QI=300|1|1|1|1|1|6|367|305 |
| chr8_3 | exon | 23460757 | 23461651 | 23460757 | ID=Msa1282720-mRNA-1:exon:8346;Parent=Msa1282720-mRNA-1 |
| chr8_3 | exon | 23462113 | 23462170 | 23462113 | ID=Msa1282720-mRNA-1:exon:8345;Parent=Msa1282720-mRNA-1 |
| chr8_3 | exon | 23462257 | 23462388 | 23462257 | ID=Msa1282720-mRNA-1:exon:8344;Parent=Msa1282720-mRNA-1 |
| chr8_3 | exon | 23463116 | 23463209 | 23463116 | ID=Msa1282720-mRNA-1:exon:8343;Parent=Msa1282720-mRNA-1 |
| chr8_3 | exon | 23463299 | 23463371 | 23463299 | ID=Msa1282720-mRNA-1:exon:8342;Parent=Msa1282720-mRNA-1 |
| chr8_3 | exon | 23464315 | 23464647 | 23464315 | ID=Msa1282720-mRNA-1:exon:8341;Parent=Msa1282720-mRNA-1 |
| chr8_3 | five_prime_UTR | 23464348 | 23464647 | 23464348 | ID=Msa1282720-mRNA-1:five_prime_utr;Parent=Msa1282720-mRNA-1 |
| chr8_3 | CDS | 23464315 | 23464347 | 23464315 | ID=Msa1282720-mRNA-1:cds;Parent=Msa1282720-mRNA-1 |
| chr8_3 | CDS | 23463299 | 23463371 | 23463299 | ID=Msa1282720-mRNA-1:cds;Parent=Msa1282720-mRNA-1 |
| chr8_3 | CDS | 23463116 | 23463209 | 23463116 | ID=Msa1282720-mRNA-1:cds;Parent=Msa1282720-mRNA-1 |
| chr8_3 | CDS | 23462257 | 23462388 | 23462257 | ID=Msa1282720-mRNA-1:cds;Parent=Msa1282720-mRNA-1 |
| chr8_3 | CDS | 23462113 | 23462170 | 23462113 | ID=Msa1282720-mRNA-1:cds;Parent=Msa1282720-mRNA-1 |
| chr8_3 | CDS | 23461124 | 23461651 | 23461124 | ID=Msa1282720-mRNA-1:cds;Parent=Msa1282720-mRNA-1 |
| chr8_3 | three_prime_UTR | 23460757 | 23461123 | 23460757 | ID=Msa1282720-mRNA-1:three_prime_utr;Parent=Msa1282720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
