AlfalfaGEDB | Msa1287120

M. sativa cultivar zhongmu-4 / Msa1287120

KEGG: K02206
GO: -
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1287120	KEH19588.1	68.148	135	17	1	48	156	1	135	8.69e-52	171

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1287120	sp\|P43450\|CDK2_CARAU	30.709	127	57	2	55	154	38	160	2.92e-13	68.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1287120	A0A072TRV9	68.148	135	17	1	48	156	1	135	4.15e-52	171

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1287120	MtrunA17_Chr8g0360761	63.768	69	19	1	48	110	1	69	2.93e-22	87.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1287120	AT3G48750.1	26.772	127	63	2	55	154	38	161	7.47e-11	59.3

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Find 24 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATTGACCCGACAATAT+TGG	0.287098	8_3:+36845892	None:intergenic
AAGATTGACCCGACAATATT+GGG	0.288955	8_3:+36845893	None:intergenic
ACGTGATTTAAGACTCTGTG+TGG	0.649018	8_3:+36845941	None:intergenic
AGATTGACCCGACAATATTG+GGG	0.649456	8_3:+36845894	None:intergenic
AGGCTGATAACTGCAGAAGG+TGG	0.634288	8_3:-36846058	Msa1287120:CDS
ATAGAGTAGGGTGAAAGAGG+AGG	0.608366	8_3:+36845135	None:intergenic
ATAGCACATATAAAGATTAT+AGG	0.319668	8_3:-36846078	Msa1287120:CDS
ATTCAGATTGCAGACAGTGA+TGG	0.585377	8_3:-36845683	Msa1287120:intron
ATTTATTCATTAATAGAGTA+GGG	0.477489	8_3:+36845123	None:intergenic
CATATTCGCAAAATTCTACA+CGG	0.662906	8_3:-36845252	Msa1287120:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTTCCAAATTTCATCATTC+AGG	-	chr8_3:36845150-36845169	Msa1287120:CDS	30.0%
AGAACAGAGAATAAGTCTAT+AGG	+	chr8_3:36845222-36845241	None:intergenic	30.0%
TATCTTGTAGTGCTAAGAAA+AGG	-	chr8_3:36845943-36845962	Msa1287120:CDS	30.0%
CATATTCGCAAAATTCTACA+CGG	-	chr8_3:36846136-36846155	Msa1287120:intron	30.0%
AGTTCCAAATTTCATCATTC+AGG	-	chr8_3:36845150-36845169	Msa1287120:CDS	30.0%
AGAACAGAGAATAAGTCTAT+AGG	+	chr8_3:36845222-36845241	None:intergenic	30.0%
TATCTTGTAGTGCTAAGAAA+AGG	-	chr8_3:36845943-36845962	Msa1287120:CDS	30.0%
CATATTCGCAAAATTCTACA+CGG	-	chr8_3:36846136-36846155	Msa1287120:intron	30.0%
CCAGAAAACCAGAAAAACAA+TGG	-	chr8_3:36845420-36845439	Msa1287120:intron	35.0%
AAGATTGACCCGACAATATT+GGG	+	chr8_3:36845498-36845517	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	36845125	36846285	36845125	ID=Msa1287120;Name=Msa1287120
chr8_3	mRNA	36845125	36846285	36845125	ID=Msa1287120-mRNA-1;Parent=Msa1287120;Name=Msa1287120-mRNA-1;_AED=0.47;_eAED=0.47;_QI=0\|0\|0\|0.75\|0.33\|0.5\|4\|0\|157
chr8_3	exon	36846275	36846285	36846275	ID=Msa1287120-mRNA-1:exon:10663;Parent=Msa1287120-mRNA-1
chr8_3	exon	36845902	36846135	36845902	ID=Msa1287120-mRNA-1:exon:10662;Parent=Msa1287120-mRNA-1
chr8_3	exon	36845660	36845699	36845660	ID=Msa1287120-mRNA-1:exon:10661;Parent=Msa1287120-mRNA-1
chr8_3	exon	36845125	36845313	36845125	ID=Msa1287120-mRNA-1:exon:10660;Parent=Msa1287120-mRNA-1
chr8_3	CDS	36846275	36846285	36846275	ID=Msa1287120-mRNA-1:cds;Parent=Msa1287120-mRNA-1
chr8_3	CDS	36845902	36846135	36845902	ID=Msa1287120-mRNA-1:cds;Parent=Msa1287120-mRNA-1
chr8_3	CDS	36845660	36845699	36845660	ID=Msa1287120-mRNA-1:cds;Parent=Msa1287120-mRNA-1
chr8_3	CDS	36845125	36845313	36845125	ID=Msa1287120-mRNA-1:cds;Parent=Msa1287120-mRNA-1

Gene Sequence

>Msa1287120

ATGGAAATACTACTGCATCTAACAGAAGAGCAATATAAAGTGATAAATAGCACATATAAAGATTATAGGCTGATAACTGCAGAAGGTGGAAGGCATATTATCAAGTGCAAGCCGATTTTTAGCGAAGAGGACGTAACTACCATGGTTTTAACCATTCCAGAAAACCAGAAAAACAATGGATTTCCACACAGAGTCTTAAATCACGTCTCTATGCTCAAAAACTTGAACCACCCCAATATTGTCGGATTGCAGACAGTGATGGATACTAAGGATGCAGTGTTTCTTATTTTTCTGCGCGAAGCTCTCTCTGGATTGGCATTCTGCCATATTCGCAAAATTCTACACGGAGATCTGAAATCTAATAATATTCTGGCTTCAGTTGAAAAATTAGATGTCAAGAAAGTGAAGCTATCTGACTTTAGTGCGGCAAAAACTATTGAACCTCCTCTTTCACCCTACTCTATTAATGAATAA

Protein sequence

>Msa1287120

MEILLHLTEEQYKVINSTYKDYRLITAEGGRHIIKCKPIFSEEDVTTMVLTIPENQKNNGFPHRVLNHVSMLKNLNHPNIVGLQTVMDTKDAVFLIFLREALSGLAFCHIRKILHGDLKSNNILASVEKLDVKKVKLSDFSAAKTIEPPLSPYSINE*