AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1288930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1288930 MtrunA17_Chr8g0362641 80.672 119 13 1 1 109 158 276 4.31e-61 188
Msa1288930 MtrunA17_Chr8g0362641 47.436 78 41 0 27 104 113 190 3.72e-15 69.3
Msa1288930 MtrunA17_Chr8g0364231 59.259 81 33 0 32 112 341 421 2.04e-26 102
Msa1288930 MtrunA17_Chr6g0452001 47.619 84 44 0 27 110 342 425 4.15e-21 87.0
Msa1288930 MtrunA17_Chr6g0452021 50.667 75 37 0 27 101 275 349 1.16e-19 82.8
Msa1288930 MtrunA17_Chr5g0415031 50.617 81 38 1 30 108 325 405 6.74e-19 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1288930 AT3G01320.1 42.391 92 50 1 6 94 310 401 5.60e-18 78.6
Msa1288930 AT5G15020.2 45.745 94 45 2 7 94 304 397 7.79e-18 78.2
Msa1288930 AT5G15020.1 45.745 94 45 2 7 94 304 397 8.18e-18 77.8
Msa1288930 AT1G70060.2 38.532 109 61 2 9 112 279 386 2.81e-17 76.6
Msa1288930 AT1G70060.1 38.532 109 61 2 9 112 279 386 2.81e-17 76.6
Msa1288930 AT3G01320.2 51.429 70 34 0 25 94 320 389 3.13e-17 76.3
Msa1288930 AT1G24190.3 43.529 85 47 1 28 112 287 370 4.35e-17 75.9
Msa1288930 AT1G24190.2 43.529 85 47 1 28 112 287 370 4.39e-17 75.9
Msa1288930 AT1G24190.1 47.945 73 37 1 28 100 287 358 1.49e-16 74.3

Find 23 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAACAGGTGTATGATTTAT+TGG 0.108276 8_3:-42387104 Msa1288930:intron
CCGAGGGGAATTACAATTAT+TGG 0.167850 8_3:-42387556 Msa1288930:intron
GGGAAAATATACCGATCTTA+TGG 0.254179 8_3:-42387083 Msa1288930:CDS
CAACAGGTGTATGATTTATT+GGG 0.288556 8_3:-42387103 Msa1288930:intron
CTTCAACGCTTTAACAAGTA+TGG 0.307882 8_3:+42387018 None:intergenic
AAGCGATCCTGAAAATTATC+AGG 0.326328 8_3:-42387622 Msa1288930:CDS
GGAAAATATACCGATCTTAT+GGG 0.409782 8_3:-42387082 Msa1288930:CDS
CCCTCGGGTAATTAATTCTC+TGG 0.410137 8_3:+42387572 None:intergenic
CTTTCAGATAGGCGATTTGT+TGG 0.441089 8_3:-42389002 None:intergenic
CATACTTGTTAAAGCGTTGA+AGG 0.441585 8_3:-42387017 Msa1288930:CDS
TTTCAGATAGGCGATTTGTT+GGG 0.503365 8_3:-42389001 None:intergenic
ATTCTCTGGCATAGATATGA+AGG 0.508252 8_3:+42387586 None:intergenic
CAATAATTGTAATTCCCCTC+GGG 0.543875 8_3:+42387557 None:intergenic
CCAATAATTGTAATTCCCCT+CGG 0.549434 8_3:+42387556 None:intergenic
GGGAAAACATTCCGATCTTG+TGG 0.549779 8_3:-42388981 Msa1288930:CDS
ATTAAATCCCTCCACAAGAT+CGG 0.550656 8_3:+42388970 None:intergenic
ATTAAATTCGCCCATAAGAT+CGG 0.555210 8_3:+42387072 None:intergenic
AAACATTCCGATCTTGTGGA+GGG 0.601247 8_3:-42388977 Msa1288930:CDS
CCAGAGAATTAATTACCCGA+GGG 0.604314 8_3:-42387572 Msa1288930:CDS
ATACTTGTTAAAGCGTTGAA+GGG 0.606596 8_3:-42387016 Msa1288930:CDS
AAAACATTCCGATCTTGTGG+AGG 0.609107 8_3:-42388978 Msa1288930:CDS
GCCAGAGAATTAATTACCCG+AGG 0.623901 8_3:-42387573 Msa1288930:CDS
CAGAGAATTAATTACCCGAG+GGG 0.717534 8_3:-42387571 Msa1288930:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATAAAAGTAAGTTATA+TGG - chr8_3:42387173-42387192 Msa1288930:intron 10.0%
!!! ACTTTTTTTTATTTATTTTG+AGG - chr8_3:42387367-42387386 Msa1288930:intron 10.0%
!! TTAAATAAAAGTAAGTTATA+TGG - chr8_3:42387173-42387192 Msa1288930:intron 10.0%
!!! ACTTTTTTTTATTTATTTTG+AGG - chr8_3:42387367-42387386 Msa1288930:intron 10.0%
!! ATTAGTTGTAAAATTACTAT+TGG + chr8_3:42387064-42387083 None:intergenic 15.0%
!!! TTTATTTTGAGGAATTATTT+TGG - chr8_3:42387378-42387397 Msa1288930:intron 15.0%
!!! CAAAAAAAATGTATTTTGTA+TGG + chr8_3:42387825-42387844 None:intergenic 15.0%
!! CTAACCTATTAATTAAAAAA+AGG - chr8_3:42388564-42388583 Msa1288930:intron 15.0%
!!! GTAACCTTTTTTTAATTAAT+AGG + chr8_3:42388571-42388590 None:intergenic 15.0%
!! TTAATTAAAAAAAGGTTACA+TGG - chr8_3:42388572-42388591 Msa1288930:intron 15.0%
!! ATTAGTTGTAAAATTACTAT+TGG + chr8_3:42387064-42387083 None:intergenic 15.0%
!!! TTTATTTTGAGGAATTATTT+TGG - chr8_3:42387378-42387397 Msa1288930:intron 15.0%
!!! CAAAAAAAATGTATTTTGTA+TGG + chr8_3:42387825-42387844 None:intergenic 15.0%
!! CTAACCTATTAATTAAAAAA+AGG - chr8_3:42388564-42388583 Msa1288930:intron 15.0%
!!! GTAACCTTTTTTTAATTAAT+AGG + chr8_3:42388571-42388590 None:intergenic 15.0%
!! TTAATTAAAAAAAGGTTACA+TGG - chr8_3:42388572-42388591 Msa1288930:intron 15.0%
!! TAATAAAGGGAGAAAAAAAT+AGG + chr8_3:42387105-42387124 None:intergenic 20.0%
!!! TTTTACAATTTTTTATTCCC+AGG + chr8_3:42387311-42387330 None:intergenic 20.0%
!!! ATACATTTTTTTTGCTTGAT+AGG - chr8_3:42387831-42387850 Msa1288930:intron 20.0%
!!! TTTCTCTTATATGTTTTTCT+TGG + chr8_3:42388034-42388053 None:intergenic 20.0%
!!! ATCACATATTCAATTTGTTT+TGG - chr8_3:42388207-42388226 Msa1288930:intron 20.0%
!!! TCACATATTCAATTTGTTTT+GGG - chr8_3:42388208-42388227 Msa1288930:intron 20.0%
!! GTTATAAAATGAATCATAGA+GGG + chr8_3:42388272-42388291 None:intergenic 20.0%
!! AGTTATAAAATGAATCATAG+AGG + chr8_3:42388273-42388292 None:intergenic 20.0%
!!! AAAAAATCCTGATAATTTTC+AGG + chr8_3:42388374-42388393 None:intergenic 20.0%
!!! TAAAGAGTACTAATATGATA+TGG + chr8_3:42388515-42388534 None:intergenic 20.0%
!! TTTAACTAGACTAAAATGTA+TGG + chr8_3:42388802-42388821 None:intergenic 20.0%
!! TAATAAAGGGAGAAAAAAAT+AGG + chr8_3:42387105-42387124 None:intergenic 20.0%
!!! TTTTACAATTTTTTATTCCC+AGG + chr8_3:42387311-42387330 None:intergenic 20.0%
!!! ATACATTTTTTTTGCTTGAT+AGG - chr8_3:42387831-42387850 Msa1288930:intron 20.0%
!!! TTTCTCTTATATGTTTTTCT+TGG + chr8_3:42388034-42388053 None:intergenic 20.0%
!!! ATCACATATTCAATTTGTTT+TGG - chr8_3:42388207-42388226 Msa1288930:intron 20.0%
!!! TCACATATTCAATTTGTTTT+GGG - chr8_3:42388208-42388227 Msa1288930:intron 20.0%
!! GTTATAAAATGAATCATAGA+GGG + chr8_3:42388272-42388291 None:intergenic 20.0%
!! AGTTATAAAATGAATCATAG+AGG + chr8_3:42388273-42388292 None:intergenic 20.0%
!!! AAAAAATCCTGATAATTTTC+AGG + chr8_3:42388374-42388393 None:intergenic 20.0%
!!! TAAAGAGTACTAATATGATA+TGG + chr8_3:42388515-42388534 None:intergenic 20.0%
!! TTTAACTAGACTAAAATGTA+TGG + chr8_3:42388802-42388821 None:intergenic 20.0%
!! CTGACAATTTGTTTATAAGT+GGG - chr8_3:42387470-42387489 Msa1288930:intron 25.0%
!! TGACAATTTGTTTATAAGTG+GGG - chr8_3:42387471-42387490 Msa1288930:intron 25.0%
!! CTGACAATTTGTTTATAAGT+GGG - chr8_3:42387470-42387489 Msa1288930:intron 25.0%
!! TGACAATTTGTTTATAAGTG+GGG - chr8_3:42387471-42387490 Msa1288930:intron 25.0%
! ACAAATATCTAGAGATTAAC+AGG - chr8_3:42388060-42388079 Msa1288930:intron 25.0%
!!! CACATATTCAATTTGTTTTG+GGG - chr8_3:42388209-42388228 Msa1288930:intron 25.0%
!!! ATTTCTCTTTGACTTTTTCA+AGG + chr8_3:42388343-42388362 None:intergenic 25.0%
! ATGATATGGCATCAAAAATT+TGG + chr8_3:42388501-42388520 None:intergenic 25.0%
! ATTAATAGGTTAGTGTTCAA+TGG + chr8_3:42388557-42388576 None:intergenic 25.0%
! TAAAAAAAGGTTACATGGTA+AGG - chr8_3:42388577-42388596 Msa1288930:intron 25.0%
!! TATATTTTGTTCAAGAACTG+AGG - chr8_3:42388741-42388760 Msa1288930:intron 25.0%
! TCTAAGTAGTTGCTAATATT+TGG - chr8_3:42388842-42388861 Msa1288930:intron 25.0%
!!! GCTTATTTTATATTTCCAAC+AGG - chr8_3:42388867-42388886 Msa1288930:intron 25.0%
!! CTGACAATTTGTTTATAAGT+GGG - chr8_3:42387470-42387489 Msa1288930:intron 25.0%
!! TGACAATTTGTTTATAAGTG+GGG - chr8_3:42387471-42387490 Msa1288930:intron 25.0%
!! CTGACAATTTGTTTATAAGT+GGG - chr8_3:42387470-42387489 Msa1288930:intron 25.0%
!! TGACAATTTGTTTATAAGTG+GGG - chr8_3:42387471-42387490 Msa1288930:intron 25.0%
! ACAAATATCTAGAGATTAAC+AGG - chr8_3:42388060-42388079 Msa1288930:intron 25.0%
!!! CACATATTCAATTTGTTTTG+GGG - chr8_3:42388209-42388228 Msa1288930:intron 25.0%
!!! ATTTCTCTTTGACTTTTTCA+AGG + chr8_3:42388343-42388362 None:intergenic 25.0%
! ATGATATGGCATCAAAAATT+TGG + chr8_3:42388501-42388520 None:intergenic 25.0%
! ATTAATAGGTTAGTGTTCAA+TGG + chr8_3:42388557-42388576 None:intergenic 25.0%
! TAAAAAAAGGTTACATGGTA+AGG - chr8_3:42388577-42388596 Msa1288930:intron 25.0%
!! TATATTTTGTTCAAGAACTG+AGG - chr8_3:42388741-42388760 Msa1288930:intron 25.0%
! TCTAAGTAGTTGCTAATATT+TGG - chr8_3:42388842-42388861 Msa1288930:intron 25.0%
!!! GCTTATTTTATATTTCCAAC+AGG - chr8_3:42388867-42388886 Msa1288930:intron 25.0%
!!! ATAAAGTGTTGTTTTGCAGA+AGG - chr8_3:42387134-42387153 Msa1288930:intron 30.0%
TATCTCATATATTGTTCACC+TGG - chr8_3:42387290-42387309 Msa1288930:intron 30.0%
ATCTCATATATTGTTCACCT+GGG - chr8_3:42387291-42387310 Msa1288930:intron 30.0%
CCACTTATAAACAAATTGTC+AGG + chr8_3:42387472-42387491 None:intergenic 30.0%
! CCTGACAATTTGTTTATAAG+TGG - chr8_3:42387469-42387488 Msa1288930:intron 30.0%
! GACAATTTGTTTATAAGTGG+GGG - chr8_3:42387472-42387491 Msa1288930:intron 30.0%
TGATACCATATTAGAAATCG+TGG + chr8_3:42387545-42387564 None:intergenic 30.0%
CCACTTATAAACAAATTGTC+AGG + chr8_3:42387472-42387491 None:intergenic 30.0%
! CCTGACAATTTGTTTATAAG+TGG - chr8_3:42387469-42387488 Msa1288930:intron 30.0%
! GACAATTTGTTTATAAGTGG+GGG - chr8_3:42387472-42387491 Msa1288930:intron 30.0%
ACAACCACGATTTCTAATAA+AGG - chr8_3:42387770-42387789 Msa1288930:intron 30.0%
ATACCTGTAGATTATGTAGT+AGG - chr8_3:42387961-42387980 Msa1288930:intron 30.0%
TACCTGTAGATTATGTAGTA+GGG - chr8_3:42387962-42387981 Msa1288930:intron 30.0%
GAGTGTAGTAAAATCAATAG+AGG - chr8_3:42388000-42388019 Msa1288930:intron 30.0%
ATATCTAGAGATTAACAGGT+TGG - chr8_3:42388064-42388083 Msa1288930:intron 30.0%
!!! TTAGAAAGTTTTGTTGTCTC+AGG - chr8_3:42388293-42388312 Msa1288930:intron 30.0%
!!! TCTTTGACTTTTTCAAGGAA+AGG + chr8_3:42388338-42388357 None:intergenic 30.0%
GGGAATTACAATTATTGGTA+TGG - chr8_3:42388435-42388454 Msa1288930:intron 30.0%
AATATAAACTGTCCTTCATG+AGG - chr8_3:42388663-42388682 Msa1288930:intron 30.0%
CAACAGGTGTATGATTTATT+GGG - chr8_3:42388883-42388902 Msa1288930:intron 30.0%
GGAAAATATACCGATCTTAT+GGG - chr8_3:42388904-42388923 Msa1288930:intron 30.0%
ATTAAATTCGCCCATAAGAT+CGG + chr8_3:42388917-42388936 None:intergenic 30.0%
!! ATACTTGTTAAAGCGTTGAA+GGG - chr8_3:42388970-42388989 Msa1288930:CDS 30.0%
!!! ATAAAGTGTTGTTTTGCAGA+AGG - chr8_3:42387134-42387153 Msa1288930:intron 30.0%
TATCTCATATATTGTTCACC+TGG - chr8_3:42387290-42387309 Msa1288930:intron 30.0%
ATCTCATATATTGTTCACCT+GGG - chr8_3:42387291-42387310 Msa1288930:intron 30.0%
CCACTTATAAACAAATTGTC+AGG + chr8_3:42387472-42387491 None:intergenic 30.0%
! CCTGACAATTTGTTTATAAG+TGG - chr8_3:42387469-42387488 Msa1288930:intron 30.0%
! GACAATTTGTTTATAAGTGG+GGG - chr8_3:42387472-42387491 Msa1288930:intron 30.0%
TGATACCATATTAGAAATCG+TGG + chr8_3:42387545-42387564 None:intergenic 30.0%
CCACTTATAAACAAATTGTC+AGG + chr8_3:42387472-42387491 None:intergenic 30.0%
! CCTGACAATTTGTTTATAAG+TGG - chr8_3:42387469-42387488 Msa1288930:intron 30.0%
! GACAATTTGTTTATAAGTGG+GGG - chr8_3:42387472-42387491 Msa1288930:intron 30.0%
ACAACCACGATTTCTAATAA+AGG - chr8_3:42387770-42387789 Msa1288930:intron 30.0%
ATACCTGTAGATTATGTAGT+AGG - chr8_3:42387961-42387980 Msa1288930:intron 30.0%
TACCTGTAGATTATGTAGTA+GGG - chr8_3:42387962-42387981 Msa1288930:intron 30.0%
GAGTGTAGTAAAATCAATAG+AGG - chr8_3:42388000-42388019 Msa1288930:intron 30.0%
ATATCTAGAGATTAACAGGT+TGG - chr8_3:42388064-42388083 Msa1288930:intron 30.0%
!!! TTAGAAAGTTTTGTTGTCTC+AGG - chr8_3:42388293-42388312 Msa1288930:intron 30.0%
!!! TCTTTGACTTTTTCAAGGAA+AGG + chr8_3:42388338-42388357 None:intergenic 30.0%
GGGAATTACAATTATTGGTA+TGG - chr8_3:42388435-42388454 Msa1288930:intron 30.0%
AATATAAACTGTCCTTCATG+AGG - chr8_3:42388663-42388682 Msa1288930:intron 30.0%
CAACAGGTGTATGATTTATT+GGG - chr8_3:42388883-42388902 Msa1288930:intron 30.0%
GGAAAATATACCGATCTTAT+GGG - chr8_3:42388904-42388923 Msa1288930:intron 30.0%
ATTAAATTCGCCCATAAGAT+CGG + chr8_3:42388917-42388936 None:intergenic 30.0%
!! ATACTTGTTAAAGCGTTGAA+GGG - chr8_3:42388970-42388989 Msa1288930:CDS 30.0%
ATTAAATCCCTCCACAAGAT+CGG + chr8_3:42387019-42387038 None:intergenic 35.0%
!! TTTTGCGTCGCTTTATCTTT+AGG - chr8_3:42387212-42387231 Msa1288930:intron 35.0%
!!! TTTTTTGCCACACATCAGTT+AGG - chr8_3:42387440-42387459 Msa1288930:intron 35.0%
CCATATTAGAAATCGTGGTT+CGG + chr8_3:42387540-42387559 None:intergenic 35.0%
AGAGAAGATAAAGAGAGAGT+CGG - chr8_3:42387874-42387893 Msa1288930:intron 35.0%
AGAACCTATCACGGAAAATA+TGG - chr8_3:42387900-42387919 Msa1288930:intron 35.0%
! TAGAGATTAACAGGTTGGAT+AGG - chr8_3:42388069-42388088 Msa1288930:intron 35.0%
! AGAGATTAACAGGTTGGATA+GGG - chr8_3:42388070-42388089 Msa1288930:intron 35.0%
AAGCGATCCTGAAAATTATC+AGG - chr8_3:42388364-42388383 Msa1288930:intron 35.0%
ATTCTCTGGCATAGATATGA+AGG + chr8_3:42388403-42388422 None:intergenic 35.0%
CAATAATTGTAATTCCCCTC+GGG + chr8_3:42388432-42388451 None:intergenic 35.0%
CCAATAATTGTAATTCCCCT+CGG + chr8_3:42388433-42388452 None:intergenic 35.0%
! ACCTGAAGAAAAAGAAGTGT+TGG - chr8_3:42388689-42388708 Msa1288930:intron 35.0%
! TCCAACACTTCTTTTTCTTC+AGG + chr8_3:42388693-42388712 None:intergenic 35.0%
GTTTACACTCCATTCAGTTT+AGG - chr8_3:42388763-42388782 Msa1288930:intron 35.0%
CAATCAGATCCTAAACTGAA+TGG + chr8_3:42388775-42388794 None:intergenic 35.0%
CCAATAAATCATACACCTGT+TGG + chr8_3:42388885-42388904 None:intergenic 35.0%
CCAACAGGTGTATGATTTAT+TGG - chr8_3:42388882-42388901 Msa1288930:intron 35.0%
GGGAAAATATACCGATCTTA+TGG - chr8_3:42388903-42388922 Msa1288930:intron 35.0%
CTTCAACGCTTTAACAAGTA+TGG + chr8_3:42388971-42388990 None:intergenic 35.0%
!! CATACTTGTTAAAGCGTTGA+AGG - chr8_3:42388969-42388988 Msa1288930:CDS 35.0%
ATTAAATCCCTCCACAAGAT+CGG + chr8_3:42387019-42387038 None:intergenic 35.0%
!! TTTTGCGTCGCTTTATCTTT+AGG - chr8_3:42387212-42387231 Msa1288930:intron 35.0%
!!! TTTTTTGCCACACATCAGTT+AGG - chr8_3:42387440-42387459 Msa1288930:intron 35.0%
CCATATTAGAAATCGTGGTT+CGG + chr8_3:42387540-42387559 None:intergenic 35.0%
AGAGAAGATAAAGAGAGAGT+CGG - chr8_3:42387874-42387893 Msa1288930:intron 35.0%
AGAACCTATCACGGAAAATA+TGG - chr8_3:42387900-42387919 Msa1288930:intron 35.0%
! TAGAGATTAACAGGTTGGAT+AGG - chr8_3:42388069-42388088 Msa1288930:intron 35.0%
! AGAGATTAACAGGTTGGATA+GGG - chr8_3:42388070-42388089 Msa1288930:intron 35.0%
AAGCGATCCTGAAAATTATC+AGG - chr8_3:42388364-42388383 Msa1288930:intron 35.0%
ATTCTCTGGCATAGATATGA+AGG + chr8_3:42388403-42388422 None:intergenic 35.0%
CAATAATTGTAATTCCCCTC+GGG + chr8_3:42388432-42388451 None:intergenic 35.0%
CCAATAATTGTAATTCCCCT+CGG + chr8_3:42388433-42388452 None:intergenic 35.0%
! ACCTGAAGAAAAAGAAGTGT+TGG - chr8_3:42388689-42388708 Msa1288930:intron 35.0%
! TCCAACACTTCTTTTTCTTC+AGG + chr8_3:42388693-42388712 None:intergenic 35.0%
GTTTACACTCCATTCAGTTT+AGG - chr8_3:42388763-42388782 Msa1288930:intron 35.0%
CAATCAGATCCTAAACTGAA+TGG + chr8_3:42388775-42388794 None:intergenic 35.0%
CCAATAAATCATACACCTGT+TGG + chr8_3:42388885-42388904 None:intergenic 35.0%
CCAACAGGTGTATGATTTAT+TGG - chr8_3:42388882-42388901 Msa1288930:intron 35.0%
GGGAAAATATACCGATCTTA+TGG - chr8_3:42388903-42388922 Msa1288930:intron 35.0%
CTTCAACGCTTTAACAAGTA+TGG + chr8_3:42388971-42388990 None:intergenic 35.0%
!! CATACTTGTTAAAGCGTTGA+AGG - chr8_3:42388969-42388988 Msa1288930:CDS 35.0%
AAAACATTCCGATCTTGTGG+AGG - chr8_3:42387008-42387027 Msa1288930:CDS 40.0%
AAACATTCCGATCTTGTGGA+GGG - chr8_3:42387009-42387028 Msa1288930:CDS 40.0%
CCGAACCACGATTTCTAATA+TGG - chr8_3:42387537-42387556 Msa1288930:intron 40.0%
TGTTGTCAGGTTTCCGTTAT+CGG - chr8_3:42387591-42387610 Msa1288930:CDS 40.0%
TGAAGCGTGAACGTAAATGA+CGG + chr8_3:42387622-42387641 None:intergenic 40.0%
TTAAGAGTCCCACATCGTTT+AGG - chr8_3:42387672-42387691 Msa1288930:CDS 40.0%
GAGGCCTTTATTAGAAATCG+TGG + chr8_3:42387777-42387796 None:intergenic 40.0%
GCCTCTCTATTGAGAAATGT+TGG - chr8_3:42387792-42387811 Msa1288930:intron 40.0%
GCCAACATTTCTCAATAGAG+AGG + chr8_3:42387796-42387815 None:intergenic 40.0%
TATTGAGAAATGTTGGCGCT+AGG - chr8_3:42387799-42387818 Msa1288930:intron 40.0%
GAGAAGATAAAGAGAGAGTC+GGG - chr8_3:42387875-42387894 Msa1288930:intron 40.0%
AGAAGATAAAGAGAGAGTCG+GGG - chr8_3:42387876-42387895 Msa1288930:intron 40.0%
ACCTATCACGGAAAATATGG+TGG - chr8_3:42387903-42387922 Msa1288930:intron 40.0%
! ACCACCATATTTTCCGTGAT+AGG + chr8_3:42387907-42387926 None:intergenic 40.0%
ATATGGTGGTAACTCGACAT+AGG - chr8_3:42387917-42387936 Msa1288930:intron 40.0%
AGCCCTACTACATAATCTAC+AGG + chr8_3:42387967-42387986 None:intergenic 40.0%
CCAGAGAATTAATTACCCGA+GGG - chr8_3:42388414-42388433 Msa1288930:intron 40.0%
CAGAGAATTAATTACCCGAG+GGG - chr8_3:42388415-42388434 Msa1288930:intron 40.0%
CCGAGGGGAATTACAATTAT+TGG - chr8_3:42388430-42388449 Msa1288930:intron 40.0%
!! TCTTCAGGTTTTCCTCATGA+AGG + chr8_3:42388678-42388697 None:intergenic 40.0%
AAAACATTCCGATCTTGTGG+AGG - chr8_3:42387008-42387027 Msa1288930:CDS 40.0%
AAACATTCCGATCTTGTGGA+GGG - chr8_3:42387009-42387028 Msa1288930:CDS 40.0%
CCGAACCACGATTTCTAATA+TGG - chr8_3:42387537-42387556 Msa1288930:intron 40.0%
TGTTGTCAGGTTTCCGTTAT+CGG - chr8_3:42387591-42387610 Msa1288930:CDS 40.0%
TGAAGCGTGAACGTAAATGA+CGG + chr8_3:42387622-42387641 None:intergenic 40.0%
TTAAGAGTCCCACATCGTTT+AGG - chr8_3:42387672-42387691 Msa1288930:CDS 40.0%
GAGGCCTTTATTAGAAATCG+TGG + chr8_3:42387777-42387796 None:intergenic 40.0%
GCCTCTCTATTGAGAAATGT+TGG - chr8_3:42387792-42387811 Msa1288930:intron 40.0%
GCCAACATTTCTCAATAGAG+AGG + chr8_3:42387796-42387815 None:intergenic 40.0%
TATTGAGAAATGTTGGCGCT+AGG - chr8_3:42387799-42387818 Msa1288930:intron 40.0%
GAGAAGATAAAGAGAGAGTC+GGG - chr8_3:42387875-42387894 Msa1288930:intron 40.0%
AGAAGATAAAGAGAGAGTCG+GGG - chr8_3:42387876-42387895 Msa1288930:intron 40.0%
ACCTATCACGGAAAATATGG+TGG - chr8_3:42387903-42387922 Msa1288930:intron 40.0%
! ACCACCATATTTTCCGTGAT+AGG + chr8_3:42387907-42387926 None:intergenic 40.0%
ATATGGTGGTAACTCGACAT+AGG - chr8_3:42387917-42387936 Msa1288930:intron 40.0%
AGCCCTACTACATAATCTAC+AGG + chr8_3:42387967-42387986 None:intergenic 40.0%
CCAGAGAATTAATTACCCGA+GGG - chr8_3:42388414-42388433 Msa1288930:intron 40.0%
CAGAGAATTAATTACCCGAG+GGG - chr8_3:42388415-42388434 Msa1288930:intron 40.0%
CCGAGGGGAATTACAATTAT+TGG - chr8_3:42388430-42388449 Msa1288930:intron 40.0%
!! TCTTCAGGTTTTCCTCATGA+AGG + chr8_3:42388678-42388697 None:intergenic 40.0%
GGGAAAACATTCCGATCTTG+TGG - chr8_3:42387005-42387024 Msa1288930:CDS 45.0%
CTAACACAACCCCACAAAAC+CGG + chr8_3:42387516-42387535 None:intergenic 45.0%
! TCAGAGCCTCTTCACGATTT+TGG - chr8_3:42387562-42387581 Msa1288930:CDS 45.0%
! CAGAGCCTCTTCACGATTTT+GGG - chr8_3:42387563-42387582 Msa1288930:CDS 45.0%
!! GATAACGGAAACCTGACAAC+AGG + chr8_3:42387592-42387611 None:intergenic 45.0%
GAAGCGTGAACGTAAATGAC+GGG + chr8_3:42387621-42387640 None:intergenic 45.0%
ATGTCTAATCCTGAGCGTGA+GGG - chr8_3:42387643-42387662 Msa1288930:CDS 45.0%
!! ACCTAACAAGCCGGTTTTGT+GGG - chr8_3:42387735-42387754 Msa1288930:intron 45.0%
CTAACACAACCCCACAAAAC+CGG + chr8_3:42387516-42387535 None:intergenic 45.0%
GTAACTCGACATAGGTGGTT+TGG - chr8_3:42387925-42387944 Msa1288930:intron 45.0%
ACTAAGTGGAGTCTGCAACA+TGG + chr8_3:42388133-42388152 None:intergenic 45.0%
ATGTTGCAGACTCCACTTAG+TGG - chr8_3:42388132-42388151 Msa1288930:intron 45.0%
TGTTGCAGACTCCACTTAGT+GGG - chr8_3:42388133-42388152 Msa1288930:intron 45.0%
GCCAGAGAATTAATTACCCG+AGG - chr8_3:42388413-42388432 Msa1288930:intron 45.0%
CCCTCGGGTAATTAATTCTC+TGG + chr8_3:42388417-42388436 None:intergenic 45.0%
GGGAAAACATTCCGATCTTG+TGG - chr8_3:42387005-42387024 Msa1288930:CDS 45.0%
CTAACACAACCCCACAAAAC+CGG + chr8_3:42387516-42387535 None:intergenic 45.0%
! TCAGAGCCTCTTCACGATTT+TGG - chr8_3:42387562-42387581 Msa1288930:CDS 45.0%
! CAGAGCCTCTTCACGATTTT+GGG - chr8_3:42387563-42387582 Msa1288930:CDS 45.0%
!! GATAACGGAAACCTGACAAC+AGG + chr8_3:42387592-42387611 None:intergenic 45.0%
GAAGCGTGAACGTAAATGAC+GGG + chr8_3:42387621-42387640 None:intergenic 45.0%
ATGTCTAATCCTGAGCGTGA+GGG - chr8_3:42387643-42387662 Msa1288930:CDS 45.0%
!! ACCTAACAAGCCGGTTTTGT+GGG - chr8_3:42387735-42387754 Msa1288930:intron 45.0%
CTAACACAACCCCACAAAAC+CGG + chr8_3:42387516-42387535 None:intergenic 45.0%
GTAACTCGACATAGGTGGTT+TGG - chr8_3:42387925-42387944 Msa1288930:intron 45.0%
ACTAAGTGGAGTCTGCAACA+TGG + chr8_3:42388133-42388152 None:intergenic 45.0%
ATGTTGCAGACTCCACTTAG+TGG - chr8_3:42388132-42388151 Msa1288930:intron 45.0%
TGTTGCAGACTCCACTTAGT+GGG - chr8_3:42388133-42388152 Msa1288930:intron 45.0%
GCCAGAGAATTAATTACCCG+AGG - chr8_3:42388413-42388432 Msa1288930:intron 45.0%
CCCTCGGGTAATTAATTCTC+TGG + chr8_3:42388417-42388436 None:intergenic 45.0%
!! TTATTAGAAATAATAATAAA+GGG + chr8_3:42387118-42387137 None:intergenic 5.0%
!! TTTATTAGAAATAATAATAA+AGG + chr8_3:42387119-42387138 None:intergenic 5.0%
!! TTATTAGAAATAATAATAAA+GGG + chr8_3:42387118-42387137 None:intergenic 5.0%
!! TTTATTAGAAATAATAATAA+AGG + chr8_3:42387119-42387138 None:intergenic 5.0%
GCCACACATCAGTTAGGAGT+TGG - chr8_3:42387446-42387465 Msa1288930:intron 50.0%
GCCAACTCCTAACTGATGTG+TGG + chr8_3:42387450-42387469 None:intergenic 50.0%
!! ACCTCACAAGCCGGTTTTGT+GGG - chr8_3:42387503-42387522 Msa1288930:intron 50.0%
!! CGGTTTTGTGGGGTTGTGTT+AGG - chr8_3:42387514-42387533 Msa1288930:intron 50.0%
! ATTTTGGGCCACCTGTTGTC+AGG - chr8_3:42387578-42387597 Msa1288930:CDS 50.0%
AACGGAAACCTGACAACAGG+TGG + chr8_3:42387589-42387608 None:intergenic 50.0%
!! AATGACGGGTGGTCCGATAA+CGG + chr8_3:42387607-42387626 None:intergenic 50.0%
GATGTCTAATCCTGAGCGTG+AGG - chr8_3:42387642-42387661 Msa1288930:CDS 50.0%
TGTCTAATCCTGAGCGTGAG+GGG - chr8_3:42387644-42387663 Msa1288930:CDS 50.0%
GTCCCACATCGTTTAGGAGT+TGG - chr8_3:42387678-42387697 Msa1288930:intron 50.0%
GGCCAACTCCTAAACGATGT+GGG + chr8_3:42387683-42387702 None:intergenic 50.0%
AGGCCAACTCCTAAACGATG+TGG + chr8_3:42387684-42387703 None:intergenic 50.0%
GCAATCCTCACCTAACAAGC+CGG - chr8_3:42387726-42387745 Msa1288930:intron 50.0%
!! CAAAACCGGCTTGTTAGGTG+AGG + chr8_3:42387734-42387753 None:intergenic 50.0%
!! CACCTAACAAGCCGGTTTTG+TGG - chr8_3:42387734-42387753 Msa1288930:intron 50.0%
!! CCTAACAAGCCGGTTTTGTG+GGG - chr8_3:42387736-42387755 Msa1288930:intron 50.0%
!! CGGTTTTGTGGGGTTGTGTT+AGG - chr8_3:42387514-42387533 Msa1288930:intron 50.0%
AGTCGGGGTAGAACCTATCA+CGG - chr8_3:42387891-42387910 Msa1288930:intron 50.0%
TGGTGGTAACTCGACATAGG+TGG - chr8_3:42387920-42387939 Msa1288930:intron 50.0%
GCCACACATCAGTTAGGAGT+TGG - chr8_3:42387446-42387465 Msa1288930:intron 50.0%
GCCAACTCCTAACTGATGTG+TGG + chr8_3:42387450-42387469 None:intergenic 50.0%
!! ACCTCACAAGCCGGTTTTGT+GGG - chr8_3:42387503-42387522 Msa1288930:intron 50.0%
!! CGGTTTTGTGGGGTTGTGTT+AGG - chr8_3:42387514-42387533 Msa1288930:intron 50.0%
! ATTTTGGGCCACCTGTTGTC+AGG - chr8_3:42387578-42387597 Msa1288930:CDS 50.0%
AACGGAAACCTGACAACAGG+TGG + chr8_3:42387589-42387608 None:intergenic 50.0%
!! AATGACGGGTGGTCCGATAA+CGG + chr8_3:42387607-42387626 None:intergenic 50.0%
GATGTCTAATCCTGAGCGTG+AGG - chr8_3:42387642-42387661 Msa1288930:CDS 50.0%
TGTCTAATCCTGAGCGTGAG+GGG - chr8_3:42387644-42387663 Msa1288930:CDS 50.0%
GTCCCACATCGTTTAGGAGT+TGG - chr8_3:42387678-42387697 Msa1288930:intron 50.0%
GGCCAACTCCTAAACGATGT+GGG + chr8_3:42387683-42387702 None:intergenic 50.0%
AGGCCAACTCCTAAACGATG+TGG + chr8_3:42387684-42387703 None:intergenic 50.0%
GCAATCCTCACCTAACAAGC+CGG - chr8_3:42387726-42387745 Msa1288930:intron 50.0%
!! CAAAACCGGCTTGTTAGGTG+AGG + chr8_3:42387734-42387753 None:intergenic 50.0%
!! CACCTAACAAGCCGGTTTTG+TGG - chr8_3:42387734-42387753 Msa1288930:intron 50.0%
!! CCTAACAAGCCGGTTTTGTG+GGG - chr8_3:42387736-42387755 Msa1288930:intron 50.0%
!! CGGTTTTGTGGGGTTGTGTT+AGG - chr8_3:42387514-42387533 Msa1288930:intron 50.0%
AGTCGGGGTAGAACCTATCA+CGG - chr8_3:42387891-42387910 Msa1288930:intron 50.0%
TGGTGGTAACTCGACATAGG+TGG - chr8_3:42387920-42387939 Msa1288930:intron 50.0%
GCAATCCTCACCTCACAAGC+CGG - chr8_3:42387494-42387513 Msa1288930:intron 55.0%
!! CAAAACCGGCTTGTGAGGTG+AGG + chr8_3:42387502-42387521 None:intergenic 55.0%
!! CACCTCACAAGCCGGTTTTG+TGG - chr8_3:42387502-42387521 Msa1288930:intron 55.0%
!! CCTCACAAGCCGGTTTTGTG+GGG - chr8_3:42387504-42387523 Msa1288930:intron 55.0%
GGTGGCCCAAAATCGTGAAG+AGG + chr8_3:42387571-42387590 None:intergenic 55.0%
! GCGTGAACGTAAATGACGGG+TGG + chr8_3:42387618-42387637 None:intergenic 55.0%
GTCTAATCCTGAGCGTGAGG+GGG - chr8_3:42387645-42387664 Msa1288930:CDS 55.0%
!! CCCCACAAAACCGGCTTGTT+AGG + chr8_3:42387739-42387758 None:intergenic 55.0%
AGACTCCACTTAGTGGGACG+AGG - chr8_3:42388139-42388158 Msa1288930:intron 55.0%
GCAATCCTCACCTCACAAGC+CGG - chr8_3:42387494-42387513 Msa1288930:intron 55.0%
!! CAAAACCGGCTTGTGAGGTG+AGG + chr8_3:42387502-42387521 None:intergenic 55.0%
!! CACCTCACAAGCCGGTTTTG+TGG - chr8_3:42387502-42387521 Msa1288930:intron 55.0%
!! CCTCACAAGCCGGTTTTGTG+GGG - chr8_3:42387504-42387523 Msa1288930:intron 55.0%
GGTGGCCCAAAATCGTGAAG+AGG + chr8_3:42387571-42387590 None:intergenic 55.0%
! GCGTGAACGTAAATGACGGG+TGG + chr8_3:42387618-42387637 None:intergenic 55.0%
GTCTAATCCTGAGCGTGAGG+GGG - chr8_3:42387645-42387664 Msa1288930:CDS 55.0%
!! CCCCACAAAACCGGCTTGTT+AGG + chr8_3:42387739-42387758 None:intergenic 55.0%
AGACTCCACTTAGTGGGACG+AGG - chr8_3:42388139-42388158 Msa1288930:intron 55.0%
!! CCCCACAAAACCGGCTTGTG+AGG + chr8_3:42387507-42387526 None:intergenic 60.0%
TAACACACCCCCTCACGCTC+AGG + chr8_3:42387655-42387674 None:intergenic 60.0%
GCAAGCCTCGTCCCACTAAG+TGG + chr8_3:42388147-42388166 None:intergenic 60.0%
!! CCCCACAAAACCGGCTTGTG+AGG + chr8_3:42387507-42387526 None:intergenic 60.0%
TAACACACCCCCTCACGCTC+AGG + chr8_3:42387655-42387674 None:intergenic 60.0%
GCAAGCCTCGTCCCACTAAG+TGG + chr8_3:42388147-42388166 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 42386991 42389017 42386991 ID=Msa1288930;Name=Msa1288930
chr8_3 mRNA 42386991 42389017 42386991 ID=Msa1288930-mRNA-1;Parent=Msa1288930;Name=Msa1288930-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0|0|0|1|0|0.33|3|0|113
chr8_3 exon 42388942 42389017 42388942 ID=Msa1288930-mRNA-1:exon:11630;Parent=Msa1288930-mRNA-1
chr8_3 exon 42387557 42387693 42387557 ID=Msa1288930-mRNA-1:exon:11629;Parent=Msa1288930-mRNA-1
chr8_3 exon 42386991 42387119 42386991 ID=Msa1288930-mRNA-1:exon:11628;Parent=Msa1288930-mRNA-1
chr8_3 CDS 42388942 42389017 42388942 ID=Msa1288930-mRNA-1:cds;Parent=Msa1288930-mRNA-1
chr8_3 CDS 42387557 42387693 42387557 ID=Msa1288930-mRNA-1:cds;Parent=Msa1288930-mRNA-1
chr8_3 CDS 42386991 42387119 42386991 ID=Msa1288930-mRNA-1:cds;Parent=Msa1288930-mRNA-1
Gene Sequence

>Msa1288930

ATAGGCGATTTGTTGGGAAAACATTCCGATCTTGTGGAGGGATTTAATGAGTTTTTGACACAATGTGAATCCAATAGTATGTACAGAGAAGAGCTTCCTTTCCTTGAAAAAGTCAAAGAGAAATTAAGCGATCCTGAAAATTATCAGGATTTTTTGAAGTGCCTTCATATCTATGCCAGAGAATTAATTACCCGAGGGGAATTACAATTATTGGTGTATGATTTATTGGGAAAATATACCGATCTTATGGGCGAATTTAATGACTTCATGACACAATGTGAAAAGAAGAATGCCATACTTGTTAAAGCGTTGAAGGGTCGTCAAATATGTCATGAGTTTTAA

Protein sequence

>Msa1288930

IGDLLGKHSDLVEGFNEFLTQCESNSMYREELPFLEKVKEKLSDPENYQDFLKCLHIYARELITRGELQLLVYDLLGKYTDLMGEFNDFMTQCEKKNAILVKALKGRQICHEF*