Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1288930 | XP_013445809.1 | 47.436 | 78 | 41 | 0 | 27 | 104 | 113 | 190 | 4.04e-11 | 69.3 |
Msa1288930 | XP_013445809.1 | 80.672 | 119 | 13 | 1 | 1 | 109 | 158 | 276 | 4.69e-57 | 188 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1288930 | sp|Q9SRH9|SNL1_ARATH | 42.391 | 92 | 50 | 1 | 6 | 94 | 310 | 401 | 5.51e-17 | 78.6 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1288930 | A0A072U246 | 47.436 | 78 | 41 | 0 | 27 | 104 | 113 | 190 | 1.93e-11 | 69.3 |
Msa1288930 | A0A072U246 | 80.672 | 119 | 13 | 1 | 1 | 109 | 158 | 276 | 2.24e-57 | 188 |
Gene ID | Type | Classification |
---|---|---|
Msa1288930 | TR | Others |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1288930 | MtrunA17_Chr8g0362641 | 80.672 | 119 | 13 | 1 | 1 | 109 | 158 | 276 | 4.31e-61 | 188 |
Msa1288930 | MtrunA17_Chr8g0362641 | 47.436 | 78 | 41 | 0 | 27 | 104 | 113 | 190 | 3.72e-15 | 69.3 |
Msa1288930 | MtrunA17_Chr8g0364231 | 59.259 | 81 | 33 | 0 | 32 | 112 | 341 | 421 | 2.04e-26 | 102 |
Msa1288930 | MtrunA17_Chr6g0452001 | 47.619 | 84 | 44 | 0 | 27 | 110 | 342 | 425 | 4.15e-21 | 87.0 |
Msa1288930 | MtrunA17_Chr6g0452021 | 50.667 | 75 | 37 | 0 | 27 | 101 | 275 | 349 | 1.16e-19 | 82.8 |
Msa1288930 | MtrunA17_Chr5g0415031 | 50.617 | 81 | 38 | 1 | 30 | 108 | 325 | 405 | 6.74e-19 | 80.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1288930 | AT3G01320.1 | 42.391 | 92 | 50 | 1 | 6 | 94 | 310 | 401 | 5.60e-18 | 78.6 |
Msa1288930 | AT5G15020.2 | 45.745 | 94 | 45 | 2 | 7 | 94 | 304 | 397 | 7.79e-18 | 78.2 |
Msa1288930 | AT5G15020.1 | 45.745 | 94 | 45 | 2 | 7 | 94 | 304 | 397 | 8.18e-18 | 77.8 |
Msa1288930 | AT1G70060.2 | 38.532 | 109 | 61 | 2 | 9 | 112 | 279 | 386 | 2.81e-17 | 76.6 |
Msa1288930 | AT1G70060.1 | 38.532 | 109 | 61 | 2 | 9 | 112 | 279 | 386 | 2.81e-17 | 76.6 |
Msa1288930 | AT3G01320.2 | 51.429 | 70 | 34 | 0 | 25 | 94 | 320 | 389 | 3.13e-17 | 76.3 |
Msa1288930 | AT1G24190.3 | 43.529 | 85 | 47 | 1 | 28 | 112 | 287 | 370 | 4.35e-17 | 75.9 |
Msa1288930 | AT1G24190.2 | 43.529 | 85 | 47 | 1 | 28 | 112 | 287 | 370 | 4.39e-17 | 75.9 |
Msa1288930 | AT1G24190.1 | 47.945 | 73 | 37 | 1 | 28 | 100 | 287 | 358 | 1.49e-16 | 74.3 |
Find 23 sgRNAs with CRISPR-Local
Find 288 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCAACAGGTGTATGATTTAT+TGG | 0.108276 | 8_3:-42387104 | Msa1288930:intron |
CCGAGGGGAATTACAATTAT+TGG | 0.167850 | 8_3:-42387556 | Msa1288930:intron |
GGGAAAATATACCGATCTTA+TGG | 0.254179 | 8_3:-42387083 | Msa1288930:CDS |
CAACAGGTGTATGATTTATT+GGG | 0.288556 | 8_3:-42387103 | Msa1288930:intron |
CTTCAACGCTTTAACAAGTA+TGG | 0.307882 | 8_3:+42387018 | None:intergenic |
AAGCGATCCTGAAAATTATC+AGG | 0.326328 | 8_3:-42387622 | Msa1288930:CDS |
GGAAAATATACCGATCTTAT+GGG | 0.409782 | 8_3:-42387082 | Msa1288930:CDS |
CCCTCGGGTAATTAATTCTC+TGG | 0.410137 | 8_3:+42387572 | None:intergenic |
CTTTCAGATAGGCGATTTGT+TGG | 0.441089 | 8_3:-42389002 | None:intergenic |
CATACTTGTTAAAGCGTTGA+AGG | 0.441585 | 8_3:-42387017 | Msa1288930:CDS |
TTTCAGATAGGCGATTTGTT+GGG | 0.503365 | 8_3:-42389001 | None:intergenic |
ATTCTCTGGCATAGATATGA+AGG | 0.508252 | 8_3:+42387586 | None:intergenic |
CAATAATTGTAATTCCCCTC+GGG | 0.543875 | 8_3:+42387557 | None:intergenic |
CCAATAATTGTAATTCCCCT+CGG | 0.549434 | 8_3:+42387556 | None:intergenic |
GGGAAAACATTCCGATCTTG+TGG | 0.549779 | 8_3:-42388981 | Msa1288930:CDS |
ATTAAATCCCTCCACAAGAT+CGG | 0.550656 | 8_3:+42388970 | None:intergenic |
ATTAAATTCGCCCATAAGAT+CGG | 0.555210 | 8_3:+42387072 | None:intergenic |
AAACATTCCGATCTTGTGGA+GGG | 0.601247 | 8_3:-42388977 | Msa1288930:CDS |
CCAGAGAATTAATTACCCGA+GGG | 0.604314 | 8_3:-42387572 | Msa1288930:CDS |
ATACTTGTTAAAGCGTTGAA+GGG | 0.606596 | 8_3:-42387016 | Msa1288930:CDS |
AAAACATTCCGATCTTGTGG+AGG | 0.609107 | 8_3:-42388978 | Msa1288930:CDS |
GCCAGAGAATTAATTACCCG+AGG | 0.623901 | 8_3:-42387573 | Msa1288930:CDS |
CAGAGAATTAATTACCCGAG+GGG | 0.717534 | 8_3:-42387571 | Msa1288930:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTAAATAAAAGTAAGTTATA+TGG | - | chr8_3:42387173-42387192 | Msa1288930:intron | 10.0% |
!!! | ACTTTTTTTTATTTATTTTG+AGG | - | chr8_3:42387367-42387386 | Msa1288930:intron | 10.0% |
!! | TTAAATAAAAGTAAGTTATA+TGG | - | chr8_3:42387173-42387192 | Msa1288930:intron | 10.0% |
!!! | ACTTTTTTTTATTTATTTTG+AGG | - | chr8_3:42387367-42387386 | Msa1288930:intron | 10.0% |
!! | ATTAGTTGTAAAATTACTAT+TGG | + | chr8_3:42387064-42387083 | None:intergenic | 15.0% |
!!! | TTTATTTTGAGGAATTATTT+TGG | - | chr8_3:42387378-42387397 | Msa1288930:intron | 15.0% |
!!! | CAAAAAAAATGTATTTTGTA+TGG | + | chr8_3:42387825-42387844 | None:intergenic | 15.0% |
!! | CTAACCTATTAATTAAAAAA+AGG | - | chr8_3:42388564-42388583 | Msa1288930:intron | 15.0% |
!!! | GTAACCTTTTTTTAATTAAT+AGG | + | chr8_3:42388571-42388590 | None:intergenic | 15.0% |
!! | TTAATTAAAAAAAGGTTACA+TGG | - | chr8_3:42388572-42388591 | Msa1288930:intron | 15.0% |
!! | ATTAGTTGTAAAATTACTAT+TGG | + | chr8_3:42387064-42387083 | None:intergenic | 15.0% |
!!! | TTTATTTTGAGGAATTATTT+TGG | - | chr8_3:42387378-42387397 | Msa1288930:intron | 15.0% |
!!! | CAAAAAAAATGTATTTTGTA+TGG | + | chr8_3:42387825-42387844 | None:intergenic | 15.0% |
!! | CTAACCTATTAATTAAAAAA+AGG | - | chr8_3:42388564-42388583 | Msa1288930:intron | 15.0% |
!!! | GTAACCTTTTTTTAATTAAT+AGG | + | chr8_3:42388571-42388590 | None:intergenic | 15.0% |
!! | TTAATTAAAAAAAGGTTACA+TGG | - | chr8_3:42388572-42388591 | Msa1288930:intron | 15.0% |
!! | TAATAAAGGGAGAAAAAAAT+AGG | + | chr8_3:42387105-42387124 | None:intergenic | 20.0% |
!!! | TTTTACAATTTTTTATTCCC+AGG | + | chr8_3:42387311-42387330 | None:intergenic | 20.0% |
!!! | ATACATTTTTTTTGCTTGAT+AGG | - | chr8_3:42387831-42387850 | Msa1288930:intron | 20.0% |
!!! | TTTCTCTTATATGTTTTTCT+TGG | + | chr8_3:42388034-42388053 | None:intergenic | 20.0% |
!!! | ATCACATATTCAATTTGTTT+TGG | - | chr8_3:42388207-42388226 | Msa1288930:intron | 20.0% |
!!! | TCACATATTCAATTTGTTTT+GGG | - | chr8_3:42388208-42388227 | Msa1288930:intron | 20.0% |
!! | GTTATAAAATGAATCATAGA+GGG | + | chr8_3:42388272-42388291 | None:intergenic | 20.0% |
!! | AGTTATAAAATGAATCATAG+AGG | + | chr8_3:42388273-42388292 | None:intergenic | 20.0% |
!!! | AAAAAATCCTGATAATTTTC+AGG | + | chr8_3:42388374-42388393 | None:intergenic | 20.0% |
!!! | TAAAGAGTACTAATATGATA+TGG | + | chr8_3:42388515-42388534 | None:intergenic | 20.0% |
!! | TTTAACTAGACTAAAATGTA+TGG | + | chr8_3:42388802-42388821 | None:intergenic | 20.0% |
!! | TAATAAAGGGAGAAAAAAAT+AGG | + | chr8_3:42387105-42387124 | None:intergenic | 20.0% |
!!! | TTTTACAATTTTTTATTCCC+AGG | + | chr8_3:42387311-42387330 | None:intergenic | 20.0% |
!!! | ATACATTTTTTTTGCTTGAT+AGG | - | chr8_3:42387831-42387850 | Msa1288930:intron | 20.0% |
!!! | TTTCTCTTATATGTTTTTCT+TGG | + | chr8_3:42388034-42388053 | None:intergenic | 20.0% |
!!! | ATCACATATTCAATTTGTTT+TGG | - | chr8_3:42388207-42388226 | Msa1288930:intron | 20.0% |
!!! | TCACATATTCAATTTGTTTT+GGG | - | chr8_3:42388208-42388227 | Msa1288930:intron | 20.0% |
!! | GTTATAAAATGAATCATAGA+GGG | + | chr8_3:42388272-42388291 | None:intergenic | 20.0% |
!! | AGTTATAAAATGAATCATAG+AGG | + | chr8_3:42388273-42388292 | None:intergenic | 20.0% |
!!! | AAAAAATCCTGATAATTTTC+AGG | + | chr8_3:42388374-42388393 | None:intergenic | 20.0% |
!!! | TAAAGAGTACTAATATGATA+TGG | + | chr8_3:42388515-42388534 | None:intergenic | 20.0% |
!! | TTTAACTAGACTAAAATGTA+TGG | + | chr8_3:42388802-42388821 | None:intergenic | 20.0% |
!! | CTGACAATTTGTTTATAAGT+GGG | - | chr8_3:42387470-42387489 | Msa1288930:intron | 25.0% |
!! | TGACAATTTGTTTATAAGTG+GGG | - | chr8_3:42387471-42387490 | Msa1288930:intron | 25.0% |
!! | CTGACAATTTGTTTATAAGT+GGG | - | chr8_3:42387470-42387489 | Msa1288930:intron | 25.0% |
!! | TGACAATTTGTTTATAAGTG+GGG | - | chr8_3:42387471-42387490 | Msa1288930:intron | 25.0% |
! | ACAAATATCTAGAGATTAAC+AGG | - | chr8_3:42388060-42388079 | Msa1288930:intron | 25.0% |
!!! | CACATATTCAATTTGTTTTG+GGG | - | chr8_3:42388209-42388228 | Msa1288930:intron | 25.0% |
!!! | ATTTCTCTTTGACTTTTTCA+AGG | + | chr8_3:42388343-42388362 | None:intergenic | 25.0% |
! | ATGATATGGCATCAAAAATT+TGG | + | chr8_3:42388501-42388520 | None:intergenic | 25.0% |
! | ATTAATAGGTTAGTGTTCAA+TGG | + | chr8_3:42388557-42388576 | None:intergenic | 25.0% |
! | TAAAAAAAGGTTACATGGTA+AGG | - | chr8_3:42388577-42388596 | Msa1288930:intron | 25.0% |
!! | TATATTTTGTTCAAGAACTG+AGG | - | chr8_3:42388741-42388760 | Msa1288930:intron | 25.0% |
! | TCTAAGTAGTTGCTAATATT+TGG | - | chr8_3:42388842-42388861 | Msa1288930:intron | 25.0% |
!!! | GCTTATTTTATATTTCCAAC+AGG | - | chr8_3:42388867-42388886 | Msa1288930:intron | 25.0% |
!! | CTGACAATTTGTTTATAAGT+GGG | - | chr8_3:42387470-42387489 | Msa1288930:intron | 25.0% |
!! | TGACAATTTGTTTATAAGTG+GGG | - | chr8_3:42387471-42387490 | Msa1288930:intron | 25.0% |
!! | CTGACAATTTGTTTATAAGT+GGG | - | chr8_3:42387470-42387489 | Msa1288930:intron | 25.0% |
!! | TGACAATTTGTTTATAAGTG+GGG | - | chr8_3:42387471-42387490 | Msa1288930:intron | 25.0% |
! | ACAAATATCTAGAGATTAAC+AGG | - | chr8_3:42388060-42388079 | Msa1288930:intron | 25.0% |
!!! | CACATATTCAATTTGTTTTG+GGG | - | chr8_3:42388209-42388228 | Msa1288930:intron | 25.0% |
!!! | ATTTCTCTTTGACTTTTTCA+AGG | + | chr8_3:42388343-42388362 | None:intergenic | 25.0% |
! | ATGATATGGCATCAAAAATT+TGG | + | chr8_3:42388501-42388520 | None:intergenic | 25.0% |
! | ATTAATAGGTTAGTGTTCAA+TGG | + | chr8_3:42388557-42388576 | None:intergenic | 25.0% |
! | TAAAAAAAGGTTACATGGTA+AGG | - | chr8_3:42388577-42388596 | Msa1288930:intron | 25.0% |
!! | TATATTTTGTTCAAGAACTG+AGG | - | chr8_3:42388741-42388760 | Msa1288930:intron | 25.0% |
! | TCTAAGTAGTTGCTAATATT+TGG | - | chr8_3:42388842-42388861 | Msa1288930:intron | 25.0% |
!!! | GCTTATTTTATATTTCCAAC+AGG | - | chr8_3:42388867-42388886 | Msa1288930:intron | 25.0% |
!!! | ATAAAGTGTTGTTTTGCAGA+AGG | - | chr8_3:42387134-42387153 | Msa1288930:intron | 30.0% |
TATCTCATATATTGTTCACC+TGG | - | chr8_3:42387290-42387309 | Msa1288930:intron | 30.0% | |
ATCTCATATATTGTTCACCT+GGG | - | chr8_3:42387291-42387310 | Msa1288930:intron | 30.0% | |
CCACTTATAAACAAATTGTC+AGG | + | chr8_3:42387472-42387491 | None:intergenic | 30.0% | |
! | CCTGACAATTTGTTTATAAG+TGG | - | chr8_3:42387469-42387488 | Msa1288930:intron | 30.0% |
! | GACAATTTGTTTATAAGTGG+GGG | - | chr8_3:42387472-42387491 | Msa1288930:intron | 30.0% |
TGATACCATATTAGAAATCG+TGG | + | chr8_3:42387545-42387564 | None:intergenic | 30.0% | |
CCACTTATAAACAAATTGTC+AGG | + | chr8_3:42387472-42387491 | None:intergenic | 30.0% | |
! | CCTGACAATTTGTTTATAAG+TGG | - | chr8_3:42387469-42387488 | Msa1288930:intron | 30.0% |
! | GACAATTTGTTTATAAGTGG+GGG | - | chr8_3:42387472-42387491 | Msa1288930:intron | 30.0% |
ACAACCACGATTTCTAATAA+AGG | - | chr8_3:42387770-42387789 | Msa1288930:intron | 30.0% | |
ATACCTGTAGATTATGTAGT+AGG | - | chr8_3:42387961-42387980 | Msa1288930:intron | 30.0% | |
TACCTGTAGATTATGTAGTA+GGG | - | chr8_3:42387962-42387981 | Msa1288930:intron | 30.0% | |
GAGTGTAGTAAAATCAATAG+AGG | - | chr8_3:42388000-42388019 | Msa1288930:intron | 30.0% | |
ATATCTAGAGATTAACAGGT+TGG | - | chr8_3:42388064-42388083 | Msa1288930:intron | 30.0% | |
!!! | TTAGAAAGTTTTGTTGTCTC+AGG | - | chr8_3:42388293-42388312 | Msa1288930:intron | 30.0% |
!!! | TCTTTGACTTTTTCAAGGAA+AGG | + | chr8_3:42388338-42388357 | None:intergenic | 30.0% |
GGGAATTACAATTATTGGTA+TGG | - | chr8_3:42388435-42388454 | Msa1288930:intron | 30.0% | |
AATATAAACTGTCCTTCATG+AGG | - | chr8_3:42388663-42388682 | Msa1288930:intron | 30.0% | |
CAACAGGTGTATGATTTATT+GGG | - | chr8_3:42388883-42388902 | Msa1288930:intron | 30.0% | |
GGAAAATATACCGATCTTAT+GGG | - | chr8_3:42388904-42388923 | Msa1288930:intron | 30.0% | |
ATTAAATTCGCCCATAAGAT+CGG | + | chr8_3:42388917-42388936 | None:intergenic | 30.0% | |
!! | ATACTTGTTAAAGCGTTGAA+GGG | - | chr8_3:42388970-42388989 | Msa1288930:CDS | 30.0% |
!!! | ATAAAGTGTTGTTTTGCAGA+AGG | - | chr8_3:42387134-42387153 | Msa1288930:intron | 30.0% |
TATCTCATATATTGTTCACC+TGG | - | chr8_3:42387290-42387309 | Msa1288930:intron | 30.0% | |
ATCTCATATATTGTTCACCT+GGG | - | chr8_3:42387291-42387310 | Msa1288930:intron | 30.0% | |
CCACTTATAAACAAATTGTC+AGG | + | chr8_3:42387472-42387491 | None:intergenic | 30.0% | |
! | CCTGACAATTTGTTTATAAG+TGG | - | chr8_3:42387469-42387488 | Msa1288930:intron | 30.0% |
! | GACAATTTGTTTATAAGTGG+GGG | - | chr8_3:42387472-42387491 | Msa1288930:intron | 30.0% |
TGATACCATATTAGAAATCG+TGG | + | chr8_3:42387545-42387564 | None:intergenic | 30.0% | |
CCACTTATAAACAAATTGTC+AGG | + | chr8_3:42387472-42387491 | None:intergenic | 30.0% | |
! | CCTGACAATTTGTTTATAAG+TGG | - | chr8_3:42387469-42387488 | Msa1288930:intron | 30.0% |
! | GACAATTTGTTTATAAGTGG+GGG | - | chr8_3:42387472-42387491 | Msa1288930:intron | 30.0% |
ACAACCACGATTTCTAATAA+AGG | - | chr8_3:42387770-42387789 | Msa1288930:intron | 30.0% | |
ATACCTGTAGATTATGTAGT+AGG | - | chr8_3:42387961-42387980 | Msa1288930:intron | 30.0% | |
TACCTGTAGATTATGTAGTA+GGG | - | chr8_3:42387962-42387981 | Msa1288930:intron | 30.0% | |
GAGTGTAGTAAAATCAATAG+AGG | - | chr8_3:42388000-42388019 | Msa1288930:intron | 30.0% | |
ATATCTAGAGATTAACAGGT+TGG | - | chr8_3:42388064-42388083 | Msa1288930:intron | 30.0% | |
!!! | TTAGAAAGTTTTGTTGTCTC+AGG | - | chr8_3:42388293-42388312 | Msa1288930:intron | 30.0% |
!!! | TCTTTGACTTTTTCAAGGAA+AGG | + | chr8_3:42388338-42388357 | None:intergenic | 30.0% |
GGGAATTACAATTATTGGTA+TGG | - | chr8_3:42388435-42388454 | Msa1288930:intron | 30.0% | |
AATATAAACTGTCCTTCATG+AGG | - | chr8_3:42388663-42388682 | Msa1288930:intron | 30.0% | |
CAACAGGTGTATGATTTATT+GGG | - | chr8_3:42388883-42388902 | Msa1288930:intron | 30.0% | |
GGAAAATATACCGATCTTAT+GGG | - | chr8_3:42388904-42388923 | Msa1288930:intron | 30.0% | |
ATTAAATTCGCCCATAAGAT+CGG | + | chr8_3:42388917-42388936 | None:intergenic | 30.0% | |
!! | ATACTTGTTAAAGCGTTGAA+GGG | - | chr8_3:42388970-42388989 | Msa1288930:CDS | 30.0% |
ATTAAATCCCTCCACAAGAT+CGG | + | chr8_3:42387019-42387038 | None:intergenic | 35.0% | |
!! | TTTTGCGTCGCTTTATCTTT+AGG | - | chr8_3:42387212-42387231 | Msa1288930:intron | 35.0% |
!!! | TTTTTTGCCACACATCAGTT+AGG | - | chr8_3:42387440-42387459 | Msa1288930:intron | 35.0% |
CCATATTAGAAATCGTGGTT+CGG | + | chr8_3:42387540-42387559 | None:intergenic | 35.0% | |
AGAGAAGATAAAGAGAGAGT+CGG | - | chr8_3:42387874-42387893 | Msa1288930:intron | 35.0% | |
AGAACCTATCACGGAAAATA+TGG | - | chr8_3:42387900-42387919 | Msa1288930:intron | 35.0% | |
! | TAGAGATTAACAGGTTGGAT+AGG | - | chr8_3:42388069-42388088 | Msa1288930:intron | 35.0% |
! | AGAGATTAACAGGTTGGATA+GGG | - | chr8_3:42388070-42388089 | Msa1288930:intron | 35.0% |
AAGCGATCCTGAAAATTATC+AGG | - | chr8_3:42388364-42388383 | Msa1288930:intron | 35.0% | |
ATTCTCTGGCATAGATATGA+AGG | + | chr8_3:42388403-42388422 | None:intergenic | 35.0% | |
CAATAATTGTAATTCCCCTC+GGG | + | chr8_3:42388432-42388451 | None:intergenic | 35.0% | |
CCAATAATTGTAATTCCCCT+CGG | + | chr8_3:42388433-42388452 | None:intergenic | 35.0% | |
! | ACCTGAAGAAAAAGAAGTGT+TGG | - | chr8_3:42388689-42388708 | Msa1288930:intron | 35.0% |
! | TCCAACACTTCTTTTTCTTC+AGG | + | chr8_3:42388693-42388712 | None:intergenic | 35.0% |
GTTTACACTCCATTCAGTTT+AGG | - | chr8_3:42388763-42388782 | Msa1288930:intron | 35.0% | |
CAATCAGATCCTAAACTGAA+TGG | + | chr8_3:42388775-42388794 | None:intergenic | 35.0% | |
CCAATAAATCATACACCTGT+TGG | + | chr8_3:42388885-42388904 | None:intergenic | 35.0% | |
CCAACAGGTGTATGATTTAT+TGG | - | chr8_3:42388882-42388901 | Msa1288930:intron | 35.0% | |
GGGAAAATATACCGATCTTA+TGG | - | chr8_3:42388903-42388922 | Msa1288930:intron | 35.0% | |
CTTCAACGCTTTAACAAGTA+TGG | + | chr8_3:42388971-42388990 | None:intergenic | 35.0% | |
!! | CATACTTGTTAAAGCGTTGA+AGG | - | chr8_3:42388969-42388988 | Msa1288930:CDS | 35.0% |
ATTAAATCCCTCCACAAGAT+CGG | + | chr8_3:42387019-42387038 | None:intergenic | 35.0% | |
!! | TTTTGCGTCGCTTTATCTTT+AGG | - | chr8_3:42387212-42387231 | Msa1288930:intron | 35.0% |
!!! | TTTTTTGCCACACATCAGTT+AGG | - | chr8_3:42387440-42387459 | Msa1288930:intron | 35.0% |
CCATATTAGAAATCGTGGTT+CGG | + | chr8_3:42387540-42387559 | None:intergenic | 35.0% | |
AGAGAAGATAAAGAGAGAGT+CGG | - | chr8_3:42387874-42387893 | Msa1288930:intron | 35.0% | |
AGAACCTATCACGGAAAATA+TGG | - | chr8_3:42387900-42387919 | Msa1288930:intron | 35.0% | |
! | TAGAGATTAACAGGTTGGAT+AGG | - | chr8_3:42388069-42388088 | Msa1288930:intron | 35.0% |
! | AGAGATTAACAGGTTGGATA+GGG | - | chr8_3:42388070-42388089 | Msa1288930:intron | 35.0% |
AAGCGATCCTGAAAATTATC+AGG | - | chr8_3:42388364-42388383 | Msa1288930:intron | 35.0% | |
ATTCTCTGGCATAGATATGA+AGG | + | chr8_3:42388403-42388422 | None:intergenic | 35.0% | |
CAATAATTGTAATTCCCCTC+GGG | + | chr8_3:42388432-42388451 | None:intergenic | 35.0% | |
CCAATAATTGTAATTCCCCT+CGG | + | chr8_3:42388433-42388452 | None:intergenic | 35.0% | |
! | ACCTGAAGAAAAAGAAGTGT+TGG | - | chr8_3:42388689-42388708 | Msa1288930:intron | 35.0% |
! | TCCAACACTTCTTTTTCTTC+AGG | + | chr8_3:42388693-42388712 | None:intergenic | 35.0% |
GTTTACACTCCATTCAGTTT+AGG | - | chr8_3:42388763-42388782 | Msa1288930:intron | 35.0% | |
CAATCAGATCCTAAACTGAA+TGG | + | chr8_3:42388775-42388794 | None:intergenic | 35.0% | |
CCAATAAATCATACACCTGT+TGG | + | chr8_3:42388885-42388904 | None:intergenic | 35.0% | |
CCAACAGGTGTATGATTTAT+TGG | - | chr8_3:42388882-42388901 | Msa1288930:intron | 35.0% | |
GGGAAAATATACCGATCTTA+TGG | - | chr8_3:42388903-42388922 | Msa1288930:intron | 35.0% | |
CTTCAACGCTTTAACAAGTA+TGG | + | chr8_3:42388971-42388990 | None:intergenic | 35.0% | |
!! | CATACTTGTTAAAGCGTTGA+AGG | - | chr8_3:42388969-42388988 | Msa1288930:CDS | 35.0% |
AAAACATTCCGATCTTGTGG+AGG | - | chr8_3:42387008-42387027 | Msa1288930:CDS | 40.0% | |
AAACATTCCGATCTTGTGGA+GGG | - | chr8_3:42387009-42387028 | Msa1288930:CDS | 40.0% | |
CCGAACCACGATTTCTAATA+TGG | - | chr8_3:42387537-42387556 | Msa1288930:intron | 40.0% | |
TGTTGTCAGGTTTCCGTTAT+CGG | - | chr8_3:42387591-42387610 | Msa1288930:CDS | 40.0% | |
TGAAGCGTGAACGTAAATGA+CGG | + | chr8_3:42387622-42387641 | None:intergenic | 40.0% | |
TTAAGAGTCCCACATCGTTT+AGG | - | chr8_3:42387672-42387691 | Msa1288930:CDS | 40.0% | |
GAGGCCTTTATTAGAAATCG+TGG | + | chr8_3:42387777-42387796 | None:intergenic | 40.0% | |
GCCTCTCTATTGAGAAATGT+TGG | - | chr8_3:42387792-42387811 | Msa1288930:intron | 40.0% | |
GCCAACATTTCTCAATAGAG+AGG | + | chr8_3:42387796-42387815 | None:intergenic | 40.0% | |
TATTGAGAAATGTTGGCGCT+AGG | - | chr8_3:42387799-42387818 | Msa1288930:intron | 40.0% | |
GAGAAGATAAAGAGAGAGTC+GGG | - | chr8_3:42387875-42387894 | Msa1288930:intron | 40.0% | |
AGAAGATAAAGAGAGAGTCG+GGG | - | chr8_3:42387876-42387895 | Msa1288930:intron | 40.0% | |
ACCTATCACGGAAAATATGG+TGG | - | chr8_3:42387903-42387922 | Msa1288930:intron | 40.0% | |
! | ACCACCATATTTTCCGTGAT+AGG | + | chr8_3:42387907-42387926 | None:intergenic | 40.0% |
ATATGGTGGTAACTCGACAT+AGG | - | chr8_3:42387917-42387936 | Msa1288930:intron | 40.0% | |
AGCCCTACTACATAATCTAC+AGG | + | chr8_3:42387967-42387986 | None:intergenic | 40.0% | |
CCAGAGAATTAATTACCCGA+GGG | - | chr8_3:42388414-42388433 | Msa1288930:intron | 40.0% | |
CAGAGAATTAATTACCCGAG+GGG | - | chr8_3:42388415-42388434 | Msa1288930:intron | 40.0% | |
CCGAGGGGAATTACAATTAT+TGG | - | chr8_3:42388430-42388449 | Msa1288930:intron | 40.0% | |
!! | TCTTCAGGTTTTCCTCATGA+AGG | + | chr8_3:42388678-42388697 | None:intergenic | 40.0% |
AAAACATTCCGATCTTGTGG+AGG | - | chr8_3:42387008-42387027 | Msa1288930:CDS | 40.0% | |
AAACATTCCGATCTTGTGGA+GGG | - | chr8_3:42387009-42387028 | Msa1288930:CDS | 40.0% | |
CCGAACCACGATTTCTAATA+TGG | - | chr8_3:42387537-42387556 | Msa1288930:intron | 40.0% | |
TGTTGTCAGGTTTCCGTTAT+CGG | - | chr8_3:42387591-42387610 | Msa1288930:CDS | 40.0% | |
TGAAGCGTGAACGTAAATGA+CGG | + | chr8_3:42387622-42387641 | None:intergenic | 40.0% | |
TTAAGAGTCCCACATCGTTT+AGG | - | chr8_3:42387672-42387691 | Msa1288930:CDS | 40.0% | |
GAGGCCTTTATTAGAAATCG+TGG | + | chr8_3:42387777-42387796 | None:intergenic | 40.0% | |
GCCTCTCTATTGAGAAATGT+TGG | - | chr8_3:42387792-42387811 | Msa1288930:intron | 40.0% | |
GCCAACATTTCTCAATAGAG+AGG | + | chr8_3:42387796-42387815 | None:intergenic | 40.0% | |
TATTGAGAAATGTTGGCGCT+AGG | - | chr8_3:42387799-42387818 | Msa1288930:intron | 40.0% | |
GAGAAGATAAAGAGAGAGTC+GGG | - | chr8_3:42387875-42387894 | Msa1288930:intron | 40.0% | |
AGAAGATAAAGAGAGAGTCG+GGG | - | chr8_3:42387876-42387895 | Msa1288930:intron | 40.0% | |
ACCTATCACGGAAAATATGG+TGG | - | chr8_3:42387903-42387922 | Msa1288930:intron | 40.0% | |
! | ACCACCATATTTTCCGTGAT+AGG | + | chr8_3:42387907-42387926 | None:intergenic | 40.0% |
ATATGGTGGTAACTCGACAT+AGG | - | chr8_3:42387917-42387936 | Msa1288930:intron | 40.0% | |
AGCCCTACTACATAATCTAC+AGG | + | chr8_3:42387967-42387986 | None:intergenic | 40.0% | |
CCAGAGAATTAATTACCCGA+GGG | - | chr8_3:42388414-42388433 | Msa1288930:intron | 40.0% | |
CAGAGAATTAATTACCCGAG+GGG | - | chr8_3:42388415-42388434 | Msa1288930:intron | 40.0% | |
CCGAGGGGAATTACAATTAT+TGG | - | chr8_3:42388430-42388449 | Msa1288930:intron | 40.0% | |
!! | TCTTCAGGTTTTCCTCATGA+AGG | + | chr8_3:42388678-42388697 | None:intergenic | 40.0% |
GGGAAAACATTCCGATCTTG+TGG | - | chr8_3:42387005-42387024 | Msa1288930:CDS | 45.0% | |
CTAACACAACCCCACAAAAC+CGG | + | chr8_3:42387516-42387535 | None:intergenic | 45.0% | |
! | TCAGAGCCTCTTCACGATTT+TGG | - | chr8_3:42387562-42387581 | Msa1288930:CDS | 45.0% |
! | CAGAGCCTCTTCACGATTTT+GGG | - | chr8_3:42387563-42387582 | Msa1288930:CDS | 45.0% |
!! | GATAACGGAAACCTGACAAC+AGG | + | chr8_3:42387592-42387611 | None:intergenic | 45.0% |
GAAGCGTGAACGTAAATGAC+GGG | + | chr8_3:42387621-42387640 | None:intergenic | 45.0% | |
ATGTCTAATCCTGAGCGTGA+GGG | - | chr8_3:42387643-42387662 | Msa1288930:CDS | 45.0% | |
!! | ACCTAACAAGCCGGTTTTGT+GGG | - | chr8_3:42387735-42387754 | Msa1288930:intron | 45.0% |
CTAACACAACCCCACAAAAC+CGG | + | chr8_3:42387516-42387535 | None:intergenic | 45.0% | |
GTAACTCGACATAGGTGGTT+TGG | - | chr8_3:42387925-42387944 | Msa1288930:intron | 45.0% | |
ACTAAGTGGAGTCTGCAACA+TGG | + | chr8_3:42388133-42388152 | None:intergenic | 45.0% | |
ATGTTGCAGACTCCACTTAG+TGG | - | chr8_3:42388132-42388151 | Msa1288930:intron | 45.0% | |
TGTTGCAGACTCCACTTAGT+GGG | - | chr8_3:42388133-42388152 | Msa1288930:intron | 45.0% | |
GCCAGAGAATTAATTACCCG+AGG | - | chr8_3:42388413-42388432 | Msa1288930:intron | 45.0% | |
CCCTCGGGTAATTAATTCTC+TGG | + | chr8_3:42388417-42388436 | None:intergenic | 45.0% | |
GGGAAAACATTCCGATCTTG+TGG | - | chr8_3:42387005-42387024 | Msa1288930:CDS | 45.0% | |
CTAACACAACCCCACAAAAC+CGG | + | chr8_3:42387516-42387535 | None:intergenic | 45.0% | |
! | TCAGAGCCTCTTCACGATTT+TGG | - | chr8_3:42387562-42387581 | Msa1288930:CDS | 45.0% |
! | CAGAGCCTCTTCACGATTTT+GGG | - | chr8_3:42387563-42387582 | Msa1288930:CDS | 45.0% |
!! | GATAACGGAAACCTGACAAC+AGG | + | chr8_3:42387592-42387611 | None:intergenic | 45.0% |
GAAGCGTGAACGTAAATGAC+GGG | + | chr8_3:42387621-42387640 | None:intergenic | 45.0% | |
ATGTCTAATCCTGAGCGTGA+GGG | - | chr8_3:42387643-42387662 | Msa1288930:CDS | 45.0% | |
!! | ACCTAACAAGCCGGTTTTGT+GGG | - | chr8_3:42387735-42387754 | Msa1288930:intron | 45.0% |
CTAACACAACCCCACAAAAC+CGG | + | chr8_3:42387516-42387535 | None:intergenic | 45.0% | |
GTAACTCGACATAGGTGGTT+TGG | - | chr8_3:42387925-42387944 | Msa1288930:intron | 45.0% | |
ACTAAGTGGAGTCTGCAACA+TGG | + | chr8_3:42388133-42388152 | None:intergenic | 45.0% | |
ATGTTGCAGACTCCACTTAG+TGG | - | chr8_3:42388132-42388151 | Msa1288930:intron | 45.0% | |
TGTTGCAGACTCCACTTAGT+GGG | - | chr8_3:42388133-42388152 | Msa1288930:intron | 45.0% | |
GCCAGAGAATTAATTACCCG+AGG | - | chr8_3:42388413-42388432 | Msa1288930:intron | 45.0% | |
CCCTCGGGTAATTAATTCTC+TGG | + | chr8_3:42388417-42388436 | None:intergenic | 45.0% | |
!! | TTATTAGAAATAATAATAAA+GGG | + | chr8_3:42387118-42387137 | None:intergenic | 5.0% |
!! | TTTATTAGAAATAATAATAA+AGG | + | chr8_3:42387119-42387138 | None:intergenic | 5.0% |
!! | TTATTAGAAATAATAATAAA+GGG | + | chr8_3:42387118-42387137 | None:intergenic | 5.0% |
!! | TTTATTAGAAATAATAATAA+AGG | + | chr8_3:42387119-42387138 | None:intergenic | 5.0% |
GCCACACATCAGTTAGGAGT+TGG | - | chr8_3:42387446-42387465 | Msa1288930:intron | 50.0% | |
GCCAACTCCTAACTGATGTG+TGG | + | chr8_3:42387450-42387469 | None:intergenic | 50.0% | |
!! | ACCTCACAAGCCGGTTTTGT+GGG | - | chr8_3:42387503-42387522 | Msa1288930:intron | 50.0% |
!! | CGGTTTTGTGGGGTTGTGTT+AGG | - | chr8_3:42387514-42387533 | Msa1288930:intron | 50.0% |
! | ATTTTGGGCCACCTGTTGTC+AGG | - | chr8_3:42387578-42387597 | Msa1288930:CDS | 50.0% |
AACGGAAACCTGACAACAGG+TGG | + | chr8_3:42387589-42387608 | None:intergenic | 50.0% | |
!! | AATGACGGGTGGTCCGATAA+CGG | + | chr8_3:42387607-42387626 | None:intergenic | 50.0% |
GATGTCTAATCCTGAGCGTG+AGG | - | chr8_3:42387642-42387661 | Msa1288930:CDS | 50.0% | |
TGTCTAATCCTGAGCGTGAG+GGG | - | chr8_3:42387644-42387663 | Msa1288930:CDS | 50.0% | |
GTCCCACATCGTTTAGGAGT+TGG | - | chr8_3:42387678-42387697 | Msa1288930:intron | 50.0% | |
GGCCAACTCCTAAACGATGT+GGG | + | chr8_3:42387683-42387702 | None:intergenic | 50.0% | |
AGGCCAACTCCTAAACGATG+TGG | + | chr8_3:42387684-42387703 | None:intergenic | 50.0% | |
GCAATCCTCACCTAACAAGC+CGG | - | chr8_3:42387726-42387745 | Msa1288930:intron | 50.0% | |
!! | CAAAACCGGCTTGTTAGGTG+AGG | + | chr8_3:42387734-42387753 | None:intergenic | 50.0% |
!! | CACCTAACAAGCCGGTTTTG+TGG | - | chr8_3:42387734-42387753 | Msa1288930:intron | 50.0% |
!! | CCTAACAAGCCGGTTTTGTG+GGG | - | chr8_3:42387736-42387755 | Msa1288930:intron | 50.0% |
!! | CGGTTTTGTGGGGTTGTGTT+AGG | - | chr8_3:42387514-42387533 | Msa1288930:intron | 50.0% |
AGTCGGGGTAGAACCTATCA+CGG | - | chr8_3:42387891-42387910 | Msa1288930:intron | 50.0% | |
TGGTGGTAACTCGACATAGG+TGG | - | chr8_3:42387920-42387939 | Msa1288930:intron | 50.0% | |
GCCACACATCAGTTAGGAGT+TGG | - | chr8_3:42387446-42387465 | Msa1288930:intron | 50.0% | |
GCCAACTCCTAACTGATGTG+TGG | + | chr8_3:42387450-42387469 | None:intergenic | 50.0% | |
!! | ACCTCACAAGCCGGTTTTGT+GGG | - | chr8_3:42387503-42387522 | Msa1288930:intron | 50.0% |
!! | CGGTTTTGTGGGGTTGTGTT+AGG | - | chr8_3:42387514-42387533 | Msa1288930:intron | 50.0% |
! | ATTTTGGGCCACCTGTTGTC+AGG | - | chr8_3:42387578-42387597 | Msa1288930:CDS | 50.0% |
AACGGAAACCTGACAACAGG+TGG | + | chr8_3:42387589-42387608 | None:intergenic | 50.0% | |
!! | AATGACGGGTGGTCCGATAA+CGG | + | chr8_3:42387607-42387626 | None:intergenic | 50.0% |
GATGTCTAATCCTGAGCGTG+AGG | - | chr8_3:42387642-42387661 | Msa1288930:CDS | 50.0% | |
TGTCTAATCCTGAGCGTGAG+GGG | - | chr8_3:42387644-42387663 | Msa1288930:CDS | 50.0% | |
GTCCCACATCGTTTAGGAGT+TGG | - | chr8_3:42387678-42387697 | Msa1288930:intron | 50.0% | |
GGCCAACTCCTAAACGATGT+GGG | + | chr8_3:42387683-42387702 | None:intergenic | 50.0% | |
AGGCCAACTCCTAAACGATG+TGG | + | chr8_3:42387684-42387703 | None:intergenic | 50.0% | |
GCAATCCTCACCTAACAAGC+CGG | - | chr8_3:42387726-42387745 | Msa1288930:intron | 50.0% | |
!! | CAAAACCGGCTTGTTAGGTG+AGG | + | chr8_3:42387734-42387753 | None:intergenic | 50.0% |
!! | CACCTAACAAGCCGGTTTTG+TGG | - | chr8_3:42387734-42387753 | Msa1288930:intron | 50.0% |
!! | CCTAACAAGCCGGTTTTGTG+GGG | - | chr8_3:42387736-42387755 | Msa1288930:intron | 50.0% |
!! | CGGTTTTGTGGGGTTGTGTT+AGG | - | chr8_3:42387514-42387533 | Msa1288930:intron | 50.0% |
AGTCGGGGTAGAACCTATCA+CGG | - | chr8_3:42387891-42387910 | Msa1288930:intron | 50.0% | |
TGGTGGTAACTCGACATAGG+TGG | - | chr8_3:42387920-42387939 | Msa1288930:intron | 50.0% | |
GCAATCCTCACCTCACAAGC+CGG | - | chr8_3:42387494-42387513 | Msa1288930:intron | 55.0% | |
!! | CAAAACCGGCTTGTGAGGTG+AGG | + | chr8_3:42387502-42387521 | None:intergenic | 55.0% |
!! | CACCTCACAAGCCGGTTTTG+TGG | - | chr8_3:42387502-42387521 | Msa1288930:intron | 55.0% |
!! | CCTCACAAGCCGGTTTTGTG+GGG | - | chr8_3:42387504-42387523 | Msa1288930:intron | 55.0% |
GGTGGCCCAAAATCGTGAAG+AGG | + | chr8_3:42387571-42387590 | None:intergenic | 55.0% | |
! | GCGTGAACGTAAATGACGGG+TGG | + | chr8_3:42387618-42387637 | None:intergenic | 55.0% |
GTCTAATCCTGAGCGTGAGG+GGG | - | chr8_3:42387645-42387664 | Msa1288930:CDS | 55.0% | |
!! | CCCCACAAAACCGGCTTGTT+AGG | + | chr8_3:42387739-42387758 | None:intergenic | 55.0% |
AGACTCCACTTAGTGGGACG+AGG | - | chr8_3:42388139-42388158 | Msa1288930:intron | 55.0% | |
GCAATCCTCACCTCACAAGC+CGG | - | chr8_3:42387494-42387513 | Msa1288930:intron | 55.0% | |
!! | CAAAACCGGCTTGTGAGGTG+AGG | + | chr8_3:42387502-42387521 | None:intergenic | 55.0% |
!! | CACCTCACAAGCCGGTTTTG+TGG | - | chr8_3:42387502-42387521 | Msa1288930:intron | 55.0% |
!! | CCTCACAAGCCGGTTTTGTG+GGG | - | chr8_3:42387504-42387523 | Msa1288930:intron | 55.0% |
GGTGGCCCAAAATCGTGAAG+AGG | + | chr8_3:42387571-42387590 | None:intergenic | 55.0% | |
! | GCGTGAACGTAAATGACGGG+TGG | + | chr8_3:42387618-42387637 | None:intergenic | 55.0% |
GTCTAATCCTGAGCGTGAGG+GGG | - | chr8_3:42387645-42387664 | Msa1288930:CDS | 55.0% | |
!! | CCCCACAAAACCGGCTTGTT+AGG | + | chr8_3:42387739-42387758 | None:intergenic | 55.0% |
AGACTCCACTTAGTGGGACG+AGG | - | chr8_3:42388139-42388158 | Msa1288930:intron | 55.0% | |
!! | CCCCACAAAACCGGCTTGTG+AGG | + | chr8_3:42387507-42387526 | None:intergenic | 60.0% |
TAACACACCCCCTCACGCTC+AGG | + | chr8_3:42387655-42387674 | None:intergenic | 60.0% | |
GCAAGCCTCGTCCCACTAAG+TGG | + | chr8_3:42388147-42388166 | None:intergenic | 60.0% | |
!! | CCCCACAAAACCGGCTTGTG+AGG | + | chr8_3:42387507-42387526 | None:intergenic | 60.0% |
TAACACACCCCCTCACGCTC+AGG | + | chr8_3:42387655-42387674 | None:intergenic | 60.0% | |
GCAAGCCTCGTCCCACTAAG+TGG | + | chr8_3:42388147-42388166 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_3 | gene | 42386991 | 42389017 | 42386991 | ID=Msa1288930;Name=Msa1288930 |
chr8_3 | mRNA | 42386991 | 42389017 | 42386991 | ID=Msa1288930-mRNA-1;Parent=Msa1288930;Name=Msa1288930-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0|0|0|1|0|0.33|3|0|113 |
chr8_3 | exon | 42388942 | 42389017 | 42388942 | ID=Msa1288930-mRNA-1:exon:11630;Parent=Msa1288930-mRNA-1 |
chr8_3 | exon | 42387557 | 42387693 | 42387557 | ID=Msa1288930-mRNA-1:exon:11629;Parent=Msa1288930-mRNA-1 |
chr8_3 | exon | 42386991 | 42387119 | 42386991 | ID=Msa1288930-mRNA-1:exon:11628;Parent=Msa1288930-mRNA-1 |
chr8_3 | CDS | 42388942 | 42389017 | 42388942 | ID=Msa1288930-mRNA-1:cds;Parent=Msa1288930-mRNA-1 |
chr8_3 | CDS | 42387557 | 42387693 | 42387557 | ID=Msa1288930-mRNA-1:cds;Parent=Msa1288930-mRNA-1 |
chr8_3 | CDS | 42386991 | 42387119 | 42386991 | ID=Msa1288930-mRNA-1:cds;Parent=Msa1288930-mRNA-1 |
Gene Sequence |
Protein sequence |