AlfalfaGEDB | Msa1288930

M. sativa cultivar zhongmu-4 / Msa1288930

KEGG: K07560|K11644
GO: GO:0000003 GO:0001708 GO:0002119 GO:0002164 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0007275 GO:0007423 GO:0007548 GO:0008150 GO:0009653 GO:0009791 GO:0009887 GO:0009987 GO:0022414 GO:0030154 GO:0030539 GO:0032501 GO:0032502 GO:0035112 GO:0040011 GO:0040025 GO:0045165 GO:0046661 GO:0048513 GO:0048569 GO:0048608 GO:0048731 GO:0048806 GO:0048808 GO:0048856 GO:0048869 GO:0061458 GO:0090596 GO:0090597 GO:0090598
PFAM: PF02671.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1288930	XP_013445809.1	47.436	78	41	0	27	104	113	190	4.04e-11	69.3
Msa1288930	XP_013445809.1	80.672	119	13	1	1	109	158	276	4.69e-57	188

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1288930	sp\|Q9SRH9\|SNL1_ARATH	42.391	92	50	1	6	94	310	401	5.51e-17	78.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1288930	A0A072U246	47.436	78	41	0	27	104	113	190	1.93e-11	69.3
Msa1288930	A0A072U246	80.672	119	13	1	1	109	158	276	2.24e-57	188

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TFs/TRs:

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Gene ID	Type	Classification
Msa1288930	TR	Others

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1288930	MtrunA17_Chr8g0362641	80.672	119	13	1	1	109	158	276	4.31e-61	188
Msa1288930	MtrunA17_Chr8g0362641	47.436	78	41	0	27	104	113	190	3.72e-15	69.3
Msa1288930	MtrunA17_Chr8g0364231	59.259	81	33	0	32	112	341	421	2.04e-26	102
Msa1288930	MtrunA17_Chr6g0452001	47.619	84	44	0	27	110	342	425	4.15e-21	87.0
Msa1288930	MtrunA17_Chr6g0452021	50.667	75	37	0	27	101	275	349	1.16e-19	82.8
Msa1288930	MtrunA17_Chr5g0415031	50.617	81	38	1	30	108	325	405	6.74e-19	80.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1288930	AT3G01320.1	42.391	92	50	1	6	94	310	401	5.60e-18	78.6
Msa1288930	AT5G15020.2	45.745	94	45	2	7	94	304	397	7.79e-18	78.2
Msa1288930	AT5G15020.1	45.745	94	45	2	7	94	304	397	8.18e-18	77.8
Msa1288930	AT1G70060.2	38.532	109	61	2	9	112	279	386	2.81e-17	76.6
Msa1288930	AT1G70060.1	38.532	109	61	2	9	112	279	386	2.81e-17	76.6
Msa1288930	AT3G01320.2	51.429	70	34	0	25	94	320	389	3.13e-17	76.3
Msa1288930	AT1G24190.3	43.529	85	47	1	28	112	287	370	4.35e-17	75.9
Msa1288930	AT1G24190.2	43.529	85	47	1	28	112	287	370	4.39e-17	75.9
Msa1288930	AT1G24190.1	47.945	73	37	1	28	100	287	358	1.49e-16	74.3

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Find 23 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATTCCGATCTTGTGG+AGG	0.609107	8_3:-42388978	Msa1288930:CDS
AAACATTCCGATCTTGTGGA+GGG	0.601247	8_3:-42388977	Msa1288930:CDS
AAGCGATCCTGAAAATTATC+AGG	0.326328	8_3:-42387622	Msa1288930:CDS
ATACTTGTTAAAGCGTTGAA+GGG	0.606596	8_3:-42387016	Msa1288930:CDS
ATTAAATCCCTCCACAAGAT+CGG	0.550656	8_3:+42388970	None:intergenic
ATTAAATTCGCCCATAAGAT+CGG	0.555210	8_3:+42387072	None:intergenic
ATTCTCTGGCATAGATATGA+AGG	0.508252	8_3:+42387586	None:intergenic
CAACAGGTGTATGATTTATT+GGG	0.288556	8_3:-42387103	Msa1288930:intron
CAATAATTGTAATTCCCCTC+GGG	0.543875	8_3:+42387557	None:intergenic
CAGAGAATTAATTACCCGAG+GGG	0.717534	8_3:-42387571	Msa1288930:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATCTCATATATTGTTCACC+TGG	-	chr8_3:42387290-42387309	Msa1288930:intron	30.0%
ATCTCATATATTGTTCACCT+GGG	-	chr8_3:42387291-42387310	Msa1288930:intron	30.0%
CCACTTATAAACAAATTGTC+AGG	+	chr8_3:42387472-42387491	None:intergenic	30.0%
TGATACCATATTAGAAATCG+TGG	+	chr8_3:42387545-42387564	None:intergenic	30.0%
CCACTTATAAACAAATTGTC+AGG	+	chr8_3:42387472-42387491	None:intergenic	30.0%
ACAACCACGATTTCTAATAA+AGG	-	chr8_3:42387770-42387789	Msa1288930:intron	30.0%
ATACCTGTAGATTATGTAGT+AGG	-	chr8_3:42387961-42387980	Msa1288930:intron	30.0%
TACCTGTAGATTATGTAGTA+GGG	-	chr8_3:42387962-42387981	Msa1288930:intron	30.0%
GAGTGTAGTAAAATCAATAG+AGG	-	chr8_3:42388000-42388019	Msa1288930:intron	30.0%
ATATCTAGAGATTAACAGGT+TGG	-	chr8_3:42388064-42388083	Msa1288930:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	42386991	42389017	42386991	ID=Msa1288930;Name=Msa1288930
chr8_3	mRNA	42386991	42389017	42386991	ID=Msa1288930-mRNA-1;Parent=Msa1288930;Name=Msa1288930-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0\|0\|0\|1\|0\|0.33\|3\|0\|113
chr8_3	exon	42388942	42389017	42388942	ID=Msa1288930-mRNA-1:exon:11630;Parent=Msa1288930-mRNA-1
chr8_3	exon	42387557	42387693	42387557	ID=Msa1288930-mRNA-1:exon:11629;Parent=Msa1288930-mRNA-1
chr8_3	exon	42386991	42387119	42386991	ID=Msa1288930-mRNA-1:exon:11628;Parent=Msa1288930-mRNA-1
chr8_3	CDS	42388942	42389017	42388942	ID=Msa1288930-mRNA-1:cds;Parent=Msa1288930-mRNA-1
chr8_3	CDS	42387557	42387693	42387557	ID=Msa1288930-mRNA-1:cds;Parent=Msa1288930-mRNA-1
chr8_3	CDS	42386991	42387119	42386991	ID=Msa1288930-mRNA-1:cds;Parent=Msa1288930-mRNA-1

Gene Sequence	>Msa1288930 ATAGGCGATTTGTTGGGAAAACATTCCGATCTTGTGGAGGGATTTAATGAGTTTTTGACACAATGTGAATCCAATAGTATGTACAGAGAAGAGCTTCCTTTCCTTGAAAAAGTCAAAGAGAAATTAAGCGATCCTGAAAATTATCAGGATTTTTTGAAGTGCCTTCATATCTATGCCAGAGAATTAATTACCCGAGGGGAATTACAATTATTGGTGTATGATTTATTGGGAAAATATACCGATCTTATGGGCGAATTTAATGACTTCATGACACAATGTGAAAAGAAGAATGCCATACTTGTTAAAGCGTTGAAGGGTCGTCAAATATGTCATGAGTTTTAA
Protein sequence	>Msa1288930 IGDLLGKHSDLVEGFNEFLTQCESNSMYREELPFLEKVKEKLSDPENYQDFLKCLHIYARELITRGELQLLVYDLLGKYTDLMGEFNDFMTQCEKKNAILVKALKGRQICHEF*