Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1289240 | XP_024629447.1 | 94.595 | 333 | 5 | 1 | 1 | 320 | 1 | 333 | 0.0 | 666 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1289240 | sp|Q9SZL8|FRS5_ARATH | 36.890 | 328 | 188 | 5 | 18 | 328 | 74 | 399 | 6.42e-60 | 208 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1289240 | A0A396GJD5 | 94.595 | 333 | 5 | 1 | 1 | 320 | 1 | 333 | 0.0 | 666 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1289240 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1289240 | MtrunA17_Chr8g0363841 | 94.595 | 333 | 5 | 1 | 1 | 320 | 1 | 333 | 0.0 | 666 |
| Msa1289240 | MtrunA17_Chr5g0448761 | 36.364 | 330 | 187 | 8 | 20 | 328 | 63 | 390 | 1.04e-56 | 196 |
| Msa1289240 | MtrunA17_Chr2g0287651 | 34.756 | 328 | 191 | 5 | 9 | 319 | 71 | 392 | 2.70e-55 | 193 |
| Msa1289240 | MtrunA17_Chr1g0202341 | 33.333 | 339 | 194 | 8 | 5 | 319 | 35 | 365 | 5.12e-54 | 187 |
| Msa1289240 | MtrunA17_Chr6g0458391 | 33.981 | 309 | 183 | 6 | 19 | 319 | 227 | 522 | 9.89e-54 | 187 |
| Msa1289240 | MtrunA17_Chr3g0082121 | 35.390 | 308 | 178 | 7 | 25 | 319 | 51 | 350 | 1.24e-53 | 186 |
| Msa1289240 | MtrunA17_Chr5g0440451 | 31.692 | 325 | 179 | 6 | 18 | 312 | 44 | 355 | 4.59e-53 | 187 |
| Msa1289240 | MtrunA17_Chr2g0291591 | 33.436 | 326 | 190 | 6 | 7 | 319 | 63 | 374 | 1.41e-52 | 181 |
| Msa1289240 | MtrunA17_Chr2g0324011 | 33.542 | 319 | 188 | 7 | 19 | 319 | 12 | 324 | 2.15e-52 | 181 |
| Msa1289240 | MtrunA17_Chr2g0296781 | 34.277 | 318 | 191 | 4 | 25 | 329 | 5 | 317 | 4.46e-52 | 182 |
| Msa1289240 | MtrunA17_Chr2g0287061 | 33.227 | 313 | 186 | 5 | 7 | 319 | 173 | 462 | 3.59e-50 | 178 |
| Msa1289240 | MtrunA17_Chr3g0080351 | 33.229 | 319 | 177 | 5 | 20 | 319 | 79 | 380 | 3.36e-49 | 176 |
| Msa1289240 | MtrunA17_Chr1g0207551 | 32.808 | 317 | 189 | 6 | 20 | 319 | 37 | 346 | 7.57e-49 | 174 |
| Msa1289240 | MtrunA17_Chr2g0329031 | 33.007 | 306 | 186 | 6 | 25 | 319 | 22 | 319 | 4.76e-48 | 172 |
| Msa1289240 | MtrunA17_Chr1g0198761 | 32.317 | 328 | 195 | 5 | 17 | 319 | 47 | 372 | 7.49e-48 | 171 |
| Msa1289240 | MtrunA17_Chr5g0441581 | 33.660 | 306 | 192 | 5 | 27 | 326 | 42 | 342 | 1.09e-47 | 170 |
| Msa1289240 | MtrunA17_Chr1g0164591 | 39.224 | 232 | 119 | 4 | 101 | 319 | 8 | 230 | 7.05e-47 | 161 |
| Msa1289240 | MtrunA17_Chr1g0203721 | 31.562 | 320 | 196 | 6 | 19 | 319 | 65 | 380 | 4.22e-46 | 167 |
| Msa1289240 | MtrunA17_Chr2g0294841 | 30.488 | 328 | 197 | 5 | 18 | 319 | 46 | 368 | 1.05e-43 | 159 |
| Msa1289240 | MtrunA17_Chr6g0477261 | 44.910 | 167 | 92 | 0 | 160 | 326 | 37 | 203 | 1.39e-43 | 158 |
| Msa1289240 | MtrunA17_Chr1g0203051 | 30.794 | 315 | 200 | 5 | 26 | 324 | 88 | 400 | 2.45e-43 | 157 |
| Msa1289240 | MtrunA17_Chr2g0276841 | 29.819 | 332 | 211 | 4 | 8 | 319 | 61 | 390 | 6.33e-42 | 154 |
| Msa1289240 | MtrunA17_Chr2g0291581 | 31.056 | 322 | 202 | 5 | 5 | 312 | 49 | 364 | 2.90e-40 | 149 |
| Msa1289240 | MtrunA17_Chr7g0258861 | 30.662 | 287 | 176 | 6 | 19 | 286 | 12 | 294 | 4.57e-40 | 142 |
| Msa1289240 | MtrunA17_Chr5g0431001 | 29.358 | 327 | 202 | 5 | 20 | 320 | 64 | 387 | 1.55e-39 | 145 |
| Msa1289240 | MtrunA17_Chr1g0196541 | 29.642 | 307 | 200 | 5 | 25 | 319 | 5 | 307 | 4.64e-39 | 146 |
| Msa1289240 | MtrunA17_Chr3g0118611 | 44.366 | 142 | 79 | 0 | 178 | 319 | 118 | 259 | 3.56e-37 | 141 |
| Msa1289240 | MtrunA17_Chr5g0448511 | 42.361 | 144 | 83 | 0 | 176 | 319 | 10 | 153 | 5.21e-37 | 139 |
| Msa1289240 | MtrunA17_Chr2g0290391 | 28.152 | 341 | 208 | 6 | 14 | 321 | 45 | 381 | 3.08e-33 | 129 |
| Msa1289240 | MtrunA17_Chr2g0329421 | 30.088 | 113 | 75 | 2 | 12 | 124 | 25 | 133 | 1.16e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1289240 | AT4G38180.1 | 36.890 | 328 | 188 | 5 | 18 | 328 | 74 | 399 | 6.53e-61 | 208 |
| Msa1289240 | AT3G06250.2 | 32.595 | 316 | 183 | 7 | 4 | 319 | 181 | 466 | 2.14e-48 | 173 |
| Msa1289240 | AT3G06250.1 | 32.595 | 316 | 183 | 7 | 4 | 319 | 181 | 466 | 2.14e-48 | 173 |
| Msa1289240 | AT3G06250.3 | 32.595 | 316 | 183 | 7 | 4 | 319 | 181 | 466 | 2.14e-48 | 173 |
| Msa1289240 | AT4G15090.1 | 32.515 | 326 | 192 | 7 | 13 | 319 | 50 | 366 | 3.95e-48 | 173 |
| Msa1289240 | AT4G15090.5 | 32.515 | 326 | 192 | 7 | 13 | 319 | 50 | 366 | 3.95e-48 | 173 |
| Msa1289240 | AT4G15090.3 | 32.515 | 326 | 192 | 7 | 13 | 319 | 50 | 366 | 3.95e-48 | 173 |
| Msa1289240 | AT4G15090.2 | 32.515 | 326 | 192 | 7 | 13 | 319 | 50 | 366 | 3.95e-48 | 173 |
| Msa1289240 | AT4G15090.4 | 32.515 | 326 | 192 | 7 | 13 | 319 | 50 | 366 | 3.95e-48 | 173 |
| Msa1289240 | AT2G27110.2 | 32.792 | 308 | 179 | 5 | 19 | 319 | 51 | 337 | 6.42e-47 | 169 |
| Msa1289240 | AT2G27110.1 | 32.792 | 308 | 179 | 5 | 19 | 319 | 51 | 337 | 6.42e-47 | 169 |
| Msa1289240 | AT3G22170.2 | 32.492 | 317 | 183 | 6 | 20 | 319 | 73 | 375 | 6.36e-45 | 164 |
| Msa1289240 | AT3G22170.1 | 32.492 | 317 | 183 | 6 | 20 | 319 | 73 | 375 | 6.36e-45 | 164 |
| Msa1289240 | AT1G76320.3 | 31.803 | 305 | 196 | 6 | 25 | 321 | 5 | 305 | 6.92e-43 | 157 |
| Msa1289240 | AT1G76320.2 | 31.803 | 305 | 196 | 6 | 25 | 321 | 5 | 305 | 9.21e-43 | 157 |
| Msa1289240 | AT1G76320.1 | 31.803 | 305 | 196 | 6 | 25 | 321 | 5 | 305 | 1.06e-42 | 157 |
| Msa1289240 | AT1G76320.4 | 31.803 | 305 | 196 | 6 | 25 | 321 | 5 | 305 | 1.06e-42 | 157 |
| Msa1289240 | AT4G19990.3 | 30.117 | 342 | 184 | 8 | 1 | 317 | 1 | 312 | 1.82e-42 | 156 |
| Msa1289240 | AT4G19990.4 | 30.117 | 342 | 184 | 8 | 1 | 317 | 1 | 312 | 1.82e-42 | 156 |
| Msa1289240 | AT5G28530.1 | 30.240 | 334 | 199 | 4 | 18 | 321 | 56 | 385 | 1.87e-42 | 156 |
| Msa1289240 | AT4G19990.5 | 30.117 | 342 | 184 | 8 | 1 | 317 | 1 | 312 | 2.02e-42 | 156 |
| Msa1289240 | AT4G19990.6 | 30.117 | 342 | 184 | 8 | 1 | 317 | 1 | 312 | 2.25e-42 | 156 |
| Msa1289240 | AT4G19990.2 | 30.117 | 342 | 184 | 8 | 1 | 317 | 1 | 312 | 2.25e-42 | 156 |
| Msa1289240 | AT5G28530.3 | 30.240 | 334 | 199 | 4 | 18 | 321 | 56 | 385 | 2.33e-42 | 155 |
| Msa1289240 | AT5G28530.2 | 30.240 | 334 | 199 | 4 | 18 | 321 | 56 | 385 | 2.33e-42 | 155 |
| Msa1289240 | AT4G19990.7 | 30.178 | 338 | 181 | 8 | 5 | 317 | 19 | 326 | 4.66e-42 | 155 |
| Msa1289240 | AT5G18960.2 | 30.000 | 320 | 194 | 7 | 2 | 319 | 199 | 490 | 8.14e-42 | 155 |
| Msa1289240 | AT5G18960.1 | 30.000 | 320 | 194 | 7 | 2 | 319 | 199 | 490 | 8.14e-42 | 155 |
| Msa1289240 | AT1G10240.2 | 31.288 | 326 | 194 | 7 | 18 | 319 | 49 | 368 | 1.45e-41 | 153 |
| Msa1289240 | AT1G10240.1 | 31.288 | 326 | 194 | 7 | 18 | 319 | 49 | 368 | 1.45e-41 | 153 |
| Msa1289240 | AT1G80010.1 | 30.514 | 331 | 195 | 5 | 20 | 325 | 98 | 418 | 5.60e-41 | 152 |
| Msa1289240 | AT2G27110.3 | 45.775 | 142 | 77 | 0 | 178 | 319 | 51 | 192 | 4.60e-39 | 146 |
| Msa1289240 | AT1G52520.1 | 30.124 | 322 | 212 | 5 | 10 | 326 | 81 | 394 | 5.91e-39 | 146 |
| Msa1289240 | AT4G19990.1 | 34.468 | 235 | 130 | 4 | 84 | 317 | 44 | 255 | 4.20e-37 | 141 |
| Msa1289240 | AT2G32250.5 | 30.000 | 300 | 180 | 5 | 20 | 319 | 41 | 310 | 3.46e-36 | 139 |
| Msa1289240 | AT2G32250.6 | 30.000 | 300 | 180 | 5 | 20 | 319 | 41 | 310 | 3.89e-36 | 139 |
| Msa1289240 | AT2G32250.1 | 30.000 | 300 | 180 | 5 | 20 | 319 | 41 | 310 | 3.89e-36 | 139 |
| Msa1289240 | AT2G32250.3 | 30.000 | 300 | 180 | 5 | 20 | 319 | 41 | 310 | 3.89e-36 | 139 |
| Msa1289240 | AT2G32250.2 | 30.000 | 300 | 180 | 5 | 20 | 319 | 41 | 310 | 4.31e-36 | 138 |
| Msa1289240 | AT2G32250.4 | 30.000 | 300 | 180 | 5 | 20 | 319 | 41 | 310 | 4.31e-36 | 138 |
| Msa1289240 | AT2G32250.7 | 30.169 | 295 | 176 | 5 | 25 | 319 | 5 | 269 | 6.64e-36 | 138 |
| Msa1289240 | AT2G32250.8 | 30.169 | 295 | 176 | 5 | 25 | 319 | 5 | 269 | 7.14e-36 | 137 |
| Msa1289240 | AT4G38170.1 | 40.945 | 127 | 70 | 2 | 182 | 307 | 21 | 143 | 1.16e-25 | 107 |
| Msa1289240 | AT5G28530.5 | 25.243 | 309 | 184 | 6 | 18 | 321 | 56 | 322 | 1.14e-21 | 96.3 |
| Msa1289240 | AT5G28530.4 | 25.243 | 309 | 184 | 6 | 18 | 321 | 56 | 322 | 1.22e-21 | 96.3 |
| Msa1289240 | AT4G12850.4 | 31.579 | 133 | 83 | 4 | 9 | 139 | 6 | 132 | 2.13e-11 | 61.6 |
| Msa1289240 | AT3G59470.2 | 30.631 | 111 | 73 | 2 | 10 | 120 | 78 | 184 | 5.59e-11 | 62.8 |
| Msa1289240 | AT3G59470.3 | 30.631 | 111 | 73 | 2 | 10 | 120 | 66 | 172 | 5.70e-11 | 62.4 |
| Msa1289240 | AT3G59470.1 | 30.631 | 111 | 73 | 2 | 10 | 120 | 66 | 172 | 5.70e-11 | 62.4 |
Find 46 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGTCATCGTTTATGTTTA+TGG | 0.156730 | 8_3:+43100554 | Msa1289240:CDS |
| CTTGTGCTTGTTTACTTTGT+AGG | 0.250825 | 8_3:-43100180 | None:intergenic |
| CACGTTTGACCAATGTCTTT+TGG | 0.263428 | 8_3:+43100242 | Msa1289240:CDS |
| GAAAGTTACCAAGTTGATAT+TGG | 0.311387 | 8_3:+43099940 | Msa1289240:CDS |
| TAGTTGATTATAATTGCTTT+GGG | 0.318625 | 8_3:+43100281 | Msa1289240:CDS |
| CAAGAGCATGCTTTCAAAAC+AGG | 0.323625 | 8_3:+43099725 | Msa1289240:CDS |
| CCAGTCATGGCTAAAGCTAT+TGG | 0.338402 | 8_3:+43100514 | Msa1289240:CDS |
| GTAGTTGATTATAATTGCTT+TGG | 0.349226 | 8_3:+43100280 | Msa1289240:CDS |
| AACTTTCCACACTCCTTCCT+TGG | 0.367826 | 8_3:-43099924 | None:intergenic |
| AGAAGACCGCATAAAGTCTT+TGG | 0.373881 | 8_3:+43100036 | Msa1289240:CDS |
| GCCATTAGAGTTACAAATAG+TGG | 0.377299 | 8_3:+43100067 | Msa1289240:CDS |
| GAGCCTAGAGATATTTATCT+TGG | 0.393295 | 8_3:+43099662 | Msa1289240:CDS |
| CTAGGCTCATCAGTTTCAAT+TGG | 0.394540 | 8_3:-43099647 | None:intergenic |
| TATGCGGTCTTCTTTGAGAT+TGG | 0.397384 | 8_3:-43100026 | None:intergenic |
| CCCACTATTTGTAACTCTAA+TGG | 0.401145 | 8_3:-43100068 | None:intergenic |
| TTATAAGCCACTTCACCATC+AGG | 0.415225 | 8_3:-43099851 | None:intergenic |
| CATAAACGATGACATGCATT+TGG | 0.419056 | 8_3:-43100547 | None:intergenic |
| CATTGGTCAAACGTGATTCA+TGG | 0.448744 | 8_3:-43100234 | None:intergenic |
| CACTGGCAAAATGTCATGTT+CGG | 0.451736 | 8_3:+43100382 | Msa1289240:CDS |
| CAGTAAAGATTGAGCATCTC+CGG | 0.467376 | 8_3:-43100152 | None:intergenic |
| AACAAATATCTTTGCTGAAG+TGG | 0.482406 | 8_3:-43099983 | None:intergenic |
| AAGAACAAATTGCTTAGCTA+TGG | 0.488702 | 8_3:+43099886 | Msa1289240:CDS |
| CCATTAGAGTTACAAATAGT+GGG | 0.491139 | 8_3:+43100068 | Msa1289240:CDS |
| CCAATAGCTTTAGCCATGAC+TGG | 0.491941 | 8_3:-43100514 | None:intergenic |
| ATGCATAATTATGTCTCCAC+TGG | 0.517136 | 8_3:+43100109 | Msa1289240:CDS |
| TGATGATTTACACCAACAAA+GGG | 0.519166 | 8_3:-43100361 | None:intergenic |
| AAGTTGAAATTTATCGAAGC+CGG | 0.519905 | 8_3:+43100133 | Msa1289240:CDS |
| CTGTACACTGTAATAGAACA+TGG | 0.527444 | 8_3:-43100206 | None:intergenic |
| TGACCAAGATAAATATCTCT+AGG | 0.529714 | 8_3:-43099665 | None:intergenic |
| AGATTTAATGTGACCAAGGA+AGG | 0.533919 | 8_3:+43099911 | Msa1289240:CDS |
| TTGTTGGTGTAAATCATCAC+TGG | 0.548421 | 8_3:+43100365 | Msa1289240:CDS |
| GATAAATTTCAACTTTCCAG+TGG | 0.566800 | 8_3:-43100125 | None:intergenic |
| ACCATCTCTCCAAAAGACAT+TGG | 0.577280 | 8_3:-43100251 | None:intergenic |
| TACAGCTCATCATCCAGTCA+TGG | 0.601411 | 8_3:+43100501 | Msa1289240:CDS |
| CATTCACCAAAGACTTTATG+CGG | 0.602476 | 8_3:-43100042 | None:intergenic |
| GTGATGATTTACACCAACAA+AGG | 0.603401 | 8_3:-43100362 | None:intergenic |
| CAATGAACCTGATGGTGAAG+TGG | 0.607386 | 8_3:+43099844 | Msa1289240:CDS |
| ATTGTGATCCAATATCAACT+TGG | 0.629329 | 8_3:-43099948 | None:intergenic |
| CATTAGAGTTACAAATAGTG+GGG | 0.634264 | 8_3:+43100069 | Msa1289240:CDS |
| ATGTGACCAAGGAAGGAGTG+TGG | 0.636883 | 8_3:+43099918 | Msa1289240:CDS |
| GGTCAGATTTAATGTGACCA+AGG | 0.650278 | 8_3:+43099907 | Msa1289240:CDS |
| ATGATTTACACCAACAAAGG+GGG | 0.665077 | 8_3:-43100359 | None:intergenic |
| CATGGCTAAAGCTATTGGAG+AGG | 0.672491 | 8_3:+43100519 | Msa1289240:CDS |
| ATTAGAGTTACAAATAGTGG+GGG | 0.695167 | 8_3:+43100070 | Msa1289240:CDS |
| GATGATTTACACCAACAAAG+GGG | 0.699550 | 8_3:-43100360 | None:intergenic |
| AGTTGATTATAATTGCTTTG+GGG | 0.699964 | 8_3:+43100282 | Msa1289240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGTTTTTAAATCCTTGTT+TGG | - | chr8_3:43099828-43099847 | None:intergenic | 20.0% |
| !! | TAGTTGATTATAATTGCTTT+GGG | + | chr8_3:43100281-43100300 | Msa1289240:CDS | 20.0% |
| !!! | ATTGTTTTTAAATCCTTGTT+TGG | - | chr8_3:43099828-43099847 | None:intergenic | 20.0% |
| !! | TAGTTGATTATAATTGCTTT+GGG | + | chr8_3:43100281-43100300 | Msa1289240:CDS | 20.0% |
| ! | TTTAAAAACAATGAACCTGA+TGG | + | chr8_3:43099836-43099855 | Msa1289240:CDS | 25.0% |
| ! | GTAGTTGATTATAATTGCTT+TGG | + | chr8_3:43100280-43100299 | Msa1289240:CDS | 25.0% |
| ! | AGTTGATTATAATTGCTTTG+GGG | + | chr8_3:43100282-43100301 | Msa1289240:CDS | 25.0% |
| !! | AAAGTGAAATTTCTTTTGCT+TGG | + | chr8_3:43100425-43100444 | Msa1289240:CDS | 25.0% |
| !!! | TAAAGATTGTTTTTGGTTGT+TGG | - | chr8_3:43100483-43100502 | None:intergenic | 25.0% |
| ! | TTTAAAAACAATGAACCTGA+TGG | + | chr8_3:43099836-43099855 | Msa1289240:CDS | 25.0% |
| ! | GTAGTTGATTATAATTGCTT+TGG | + | chr8_3:43100280-43100299 | Msa1289240:CDS | 25.0% |
| ! | AGTTGATTATAATTGCTTTG+GGG | + | chr8_3:43100282-43100301 | Msa1289240:CDS | 25.0% |
| !! | AAAGTGAAATTTCTTTTGCT+TGG | + | chr8_3:43100425-43100444 | Msa1289240:CDS | 25.0% |
| !!! | TAAAGATTGTTTTTGGTTGT+TGG | - | chr8_3:43100483-43100502 | None:intergenic | 25.0% |
| TGACCAAGATAAATATCTCT+AGG | - | chr8_3:43099668-43099687 | None:intergenic | 30.0% | |
| !! | AACAGGTTTTAGTGTAAGAA+AGG | + | chr8_3:43099742-43099761 | Msa1289240:CDS | 30.0% |
| !! | ACAGGTTTTAGTGTAAGAAA+GGG | + | chr8_3:43099743-43099762 | Msa1289240:CDS | 30.0% |
| GAAAAAGAAAACACGTTTGA+AGG | + | chr8_3:43099790-43099809 | Msa1289240:CDS | 30.0% | |
| ! | GATTTTTATTGCTCCAAACA+AGG | + | chr8_3:43099812-43099831 | Msa1289240:CDS | 30.0% |
| AAGAACAAATTGCTTAGCTA+TGG | + | chr8_3:43099886-43099905 | Msa1289240:CDS | 30.0% | |
| !! | GAAAGTTACCAAGTTGATAT+TGG | + | chr8_3:43099940-43099959 | Msa1289240:CDS | 30.0% |
| ATTGTGATCCAATATCAACT+TGG | - | chr8_3:43099951-43099970 | None:intergenic | 30.0% | |
| AACAAATATCTTTGCTGAAG+TGG | - | chr8_3:43099986-43100005 | None:intergenic | 30.0% | |
| CCATTAGAGTTACAAATAGT+GGG | + | chr8_3:43100068-43100087 | Msa1289240:CDS | 30.0% | |
| CATTAGAGTTACAAATAGTG+GGG | + | chr8_3:43100069-43100088 | Msa1289240:CDS | 30.0% | |
| ATTAGAGTTACAAATAGTGG+GGG | + | chr8_3:43100070-43100089 | Msa1289240:CDS | 30.0% | |
| GATAAATTTCAACTTTCCAG+TGG | - | chr8_3:43100128-43100147 | None:intergenic | 30.0% | |
| AAGTTGAAATTTATCGAAGC+CGG | + | chr8_3:43100133-43100152 | Msa1289240:CDS | 30.0% | |
| TGATGATTTACACCAACAAA+GGG | - | chr8_3:43100364-43100383 | None:intergenic | 30.0% | |
| !! | TTGGTTGTTCAAAGCATTTT+TGG | + | chr8_3:43100444-43100463 | Msa1289240:CDS | 30.0% |
| !! | AAAGCATTTTTGGAGAGTAT+GGG | + | chr8_3:43100454-43100473 | Msa1289240:CDS | 30.0% |
| ! | TGAGCTGTAAAGATTGTTTT+TGG | - | chr8_3:43100490-43100509 | None:intergenic | 30.0% |
| CATGTCATCGTTTATGTTTA+TGG | + | chr8_3:43100554-43100573 | Msa1289240:CDS | 30.0% | |
| TGACCAAGATAAATATCTCT+AGG | - | chr8_3:43099668-43099687 | None:intergenic | 30.0% | |
| !! | AACAGGTTTTAGTGTAAGAA+AGG | + | chr8_3:43099742-43099761 | Msa1289240:CDS | 30.0% |
| !! | ACAGGTTTTAGTGTAAGAAA+GGG | + | chr8_3:43099743-43099762 | Msa1289240:CDS | 30.0% |
| GAAAAAGAAAACACGTTTGA+AGG | + | chr8_3:43099790-43099809 | Msa1289240:CDS | 30.0% | |
| ! | GATTTTTATTGCTCCAAACA+AGG | + | chr8_3:43099812-43099831 | Msa1289240:CDS | 30.0% |
| AAGAACAAATTGCTTAGCTA+TGG | + | chr8_3:43099886-43099905 | Msa1289240:CDS | 30.0% | |
| !! | GAAAGTTACCAAGTTGATAT+TGG | + | chr8_3:43099940-43099959 | Msa1289240:CDS | 30.0% |
| ATTGTGATCCAATATCAACT+TGG | - | chr8_3:43099951-43099970 | None:intergenic | 30.0% | |
| AACAAATATCTTTGCTGAAG+TGG | - | chr8_3:43099986-43100005 | None:intergenic | 30.0% | |
| CCATTAGAGTTACAAATAGT+GGG | + | chr8_3:43100068-43100087 | Msa1289240:CDS | 30.0% | |
| CATTAGAGTTACAAATAGTG+GGG | + | chr8_3:43100069-43100088 | Msa1289240:CDS | 30.0% | |
| ATTAGAGTTACAAATAGTGG+GGG | + | chr8_3:43100070-43100089 | Msa1289240:CDS | 30.0% | |
| GATAAATTTCAACTTTCCAG+TGG | - | chr8_3:43100128-43100147 | None:intergenic | 30.0% | |
| AAGTTGAAATTTATCGAAGC+CGG | + | chr8_3:43100133-43100152 | Msa1289240:CDS | 30.0% | |
| TGATGATTTACACCAACAAA+GGG | - | chr8_3:43100364-43100383 | None:intergenic | 30.0% | |
| !! | TTGGTTGTTCAAAGCATTTT+TGG | + | chr8_3:43100444-43100463 | Msa1289240:CDS | 30.0% |
| !! | AAAGCATTTTTGGAGAGTAT+GGG | + | chr8_3:43100454-43100473 | Msa1289240:CDS | 30.0% |
| ! | TGAGCTGTAAAGATTGTTTT+TGG | - | chr8_3:43100490-43100509 | None:intergenic | 30.0% |
| CATGTCATCGTTTATGTTTA+TGG | + | chr8_3:43100554-43100573 | Msa1289240:CDS | 30.0% | |
| GAGCCTAGAGATATTTATCT+TGG | + | chr8_3:43099662-43099681 | Msa1289240:CDS | 35.0% | |
| !! | CAGGTTTTAGTGTAAGAAAG+GGG | + | chr8_3:43099744-43099763 | Msa1289240:CDS | 35.0% |
| ! | TTTTAGTGTAAGAAAGGGGA+AGG | + | chr8_3:43099748-43099767 | Msa1289240:CDS | 35.0% |
| AGATTTAATGTGACCAAGGA+AGG | + | chr8_3:43099911-43099930 | Msa1289240:CDS | 35.0% | |
| CATTCACCAAAGACTTTATG+CGG | - | chr8_3:43100045-43100064 | None:intergenic | 35.0% | |
| GCCATTAGAGTTACAAATAG+TGG | + | chr8_3:43100067-43100086 | Msa1289240:CDS | 35.0% | |
| CCCACTATTTGTAACTCTAA+TGG | - | chr8_3:43100071-43100090 | None:intergenic | 35.0% | |
| ATGCATAATTATGTCTCCAC+TGG | + | chr8_3:43100109-43100128 | Msa1289240:CDS | 35.0% | |
| CTTGTGCTTGTTTACTTTGT+AGG | - | chr8_3:43100183-43100202 | None:intergenic | 35.0% | |
| CTGTACACTGTAATAGAACA+TGG | - | chr8_3:43100209-43100228 | None:intergenic | 35.0% | |
| ATGATTTACACCAACAAAGG+GGG | - | chr8_3:43100362-43100381 | None:intergenic | 35.0% | |
| GATGATTTACACCAACAAAG+GGG | - | chr8_3:43100363-43100382 | None:intergenic | 35.0% | |
| GTGATGATTTACACCAACAA+AGG | - | chr8_3:43100365-43100384 | None:intergenic | 35.0% | |
| TTGTTGGTGTAAATCATCAC+TGG | + | chr8_3:43100365-43100384 | Msa1289240:CDS | 35.0% | |
| !! | CAAAGCATTTTTGGAGAGTA+TGG | + | chr8_3:43100453-43100472 | Msa1289240:CDS | 35.0% |
| CATAAACGATGACATGCATT+TGG | - | chr8_3:43100550-43100569 | None:intergenic | 35.0% | |
| GAGCCTAGAGATATTTATCT+TGG | + | chr8_3:43099662-43099681 | Msa1289240:CDS | 35.0% | |
| !! | CAGGTTTTAGTGTAAGAAAG+GGG | + | chr8_3:43099744-43099763 | Msa1289240:CDS | 35.0% |
| ! | TTTTAGTGTAAGAAAGGGGA+AGG | + | chr8_3:43099748-43099767 | Msa1289240:CDS | 35.0% |
| AGATTTAATGTGACCAAGGA+AGG | + | chr8_3:43099911-43099930 | Msa1289240:CDS | 35.0% | |
| CATTCACCAAAGACTTTATG+CGG | - | chr8_3:43100045-43100064 | None:intergenic | 35.0% | |
| GCCATTAGAGTTACAAATAG+TGG | + | chr8_3:43100067-43100086 | Msa1289240:CDS | 35.0% | |
| CCCACTATTTGTAACTCTAA+TGG | - | chr8_3:43100071-43100090 | None:intergenic | 35.0% | |
| ATGCATAATTATGTCTCCAC+TGG | + | chr8_3:43100109-43100128 | Msa1289240:CDS | 35.0% | |
| CTTGTGCTTGTTTACTTTGT+AGG | - | chr8_3:43100183-43100202 | None:intergenic | 35.0% | |
| CTGTACACTGTAATAGAACA+TGG | - | chr8_3:43100209-43100228 | None:intergenic | 35.0% | |
| ATGATTTACACCAACAAAGG+GGG | - | chr8_3:43100362-43100381 | None:intergenic | 35.0% | |
| GATGATTTACACCAACAAAG+GGG | - | chr8_3:43100363-43100382 | None:intergenic | 35.0% | |
| GTGATGATTTACACCAACAA+AGG | - | chr8_3:43100365-43100384 | None:intergenic | 35.0% | |
| TTGTTGGTGTAAATCATCAC+TGG | + | chr8_3:43100365-43100384 | Msa1289240:CDS | 35.0% | |
| !! | CAAAGCATTTTTGGAGAGTA+TGG | + | chr8_3:43100453-43100472 | Msa1289240:CDS | 35.0% |
| CATAAACGATGACATGCATT+TGG | - | chr8_3:43100550-43100569 | None:intergenic | 35.0% | |
| CTAGGCTCATCAGTTTCAAT+TGG | - | chr8_3:43099650-43099669 | None:intergenic | 40.0% | |
| !!! | CTGTTTTGAAAGCATGCTCT+TGG | - | chr8_3:43099727-43099746 | None:intergenic | 40.0% |
| ! | CAAGAGCATGCTTTCAAAAC+AGG | + | chr8_3:43099725-43099744 | Msa1289240:CDS | 40.0% |
| TTATAAGCCACTTCACCATC+AGG | - | chr8_3:43099854-43099873 | None:intergenic | 40.0% | |
| GGTCAGATTTAATGTGACCA+AGG | + | chr8_3:43099907-43099926 | Msa1289240:CDS | 40.0% | |
| !! | TATGCGGTCTTCTTTGAGAT+TGG | - | chr8_3:43100029-43100048 | None:intergenic | 40.0% |
| AGAAGACCGCATAAAGTCTT+TGG | + | chr8_3:43100036-43100055 | Msa1289240:CDS | 40.0% | |
| CAGTAAAGATTGAGCATCTC+CGG | - | chr8_3:43100155-43100174 | None:intergenic | 40.0% | |
| CATTGGTCAAACGTGATTCA+TGG | - | chr8_3:43100237-43100256 | None:intergenic | 40.0% | |
| ! | CACGTTTGACCAATGTCTTT+TGG | + | chr8_3:43100242-43100261 | Msa1289240:CDS | 40.0% |
| !! | ACCAATGTCTTTTGGAGAGA+TGG | + | chr8_3:43100250-43100269 | Msa1289240:CDS | 40.0% |
| ACCATCTCTCCAAAAGACAT+TGG | - | chr8_3:43100254-43100273 | None:intergenic | 40.0% | |
| CACTGGCAAAATGTCATGTT+CGG | + | chr8_3:43100382-43100401 | Msa1289240:CDS | 40.0% | |
| CTAGGCTCATCAGTTTCAAT+TGG | - | chr8_3:43099650-43099669 | None:intergenic | 40.0% | |
| !!! | CTGTTTTGAAAGCATGCTCT+TGG | - | chr8_3:43099727-43099746 | None:intergenic | 40.0% |
| ! | CAAGAGCATGCTTTCAAAAC+AGG | + | chr8_3:43099725-43099744 | Msa1289240:CDS | 40.0% |
| TTATAAGCCACTTCACCATC+AGG | - | chr8_3:43099854-43099873 | None:intergenic | 40.0% | |
| GGTCAGATTTAATGTGACCA+AGG | + | chr8_3:43099907-43099926 | Msa1289240:CDS | 40.0% | |
| !! | TATGCGGTCTTCTTTGAGAT+TGG | - | chr8_3:43100029-43100048 | None:intergenic | 40.0% |
| AGAAGACCGCATAAAGTCTT+TGG | + | chr8_3:43100036-43100055 | Msa1289240:CDS | 40.0% | |
| CAGTAAAGATTGAGCATCTC+CGG | - | chr8_3:43100155-43100174 | None:intergenic | 40.0% | |
| CATTGGTCAAACGTGATTCA+TGG | - | chr8_3:43100237-43100256 | None:intergenic | 40.0% | |
| ! | CACGTTTGACCAATGTCTTT+TGG | + | chr8_3:43100242-43100261 | Msa1289240:CDS | 40.0% |
| !! | ACCAATGTCTTTTGGAGAGA+TGG | + | chr8_3:43100250-43100269 | Msa1289240:CDS | 40.0% |
| ACCATCTCTCCAAAAGACAT+TGG | - | chr8_3:43100254-43100273 | None:intergenic | 40.0% | |
| CACTGGCAAAATGTCATGTT+CGG | + | chr8_3:43100382-43100401 | Msa1289240:CDS | 40.0% | |
| ! | CAATGAACCTGATGGTGAAG+TGG | + | chr8_3:43099844-43099863 | Msa1289240:CDS | 45.0% |
| AACTTTCCACACTCCTTCCT+TGG | - | chr8_3:43099927-43099946 | None:intergenic | 45.0% | |
| !! | TTGATTTGTGCCCCCTTTGT+TGG | + | chr8_3:43100349-43100368 | Msa1289240:CDS | 45.0% |
| TACAGCTCATCATCCAGTCA+TGG | + | chr8_3:43100501-43100520 | Msa1289240:CDS | 45.0% | |
| !! | CCAATAGCTTTAGCCATGAC+TGG | - | chr8_3:43100517-43100536 | None:intergenic | 45.0% |
| CCAGTCATGGCTAAAGCTAT+TGG | + | chr8_3:43100514-43100533 | Msa1289240:CDS | 45.0% | |
| CATGGCTAAAGCTATTGGAG+AGG | + | chr8_3:43100519-43100538 | Msa1289240:CDS | 45.0% | |
| ! | CAATGAACCTGATGGTGAAG+TGG | + | chr8_3:43099844-43099863 | Msa1289240:CDS | 45.0% |
| AACTTTCCACACTCCTTCCT+TGG | - | chr8_3:43099927-43099946 | None:intergenic | 45.0% | |
| !! | TTGATTTGTGCCCCCTTTGT+TGG | + | chr8_3:43100349-43100368 | Msa1289240:CDS | 45.0% |
| TACAGCTCATCATCCAGTCA+TGG | + | chr8_3:43100501-43100520 | Msa1289240:CDS | 45.0% | |
| !! | CCAATAGCTTTAGCCATGAC+TGG | - | chr8_3:43100517-43100536 | None:intergenic | 45.0% |
| CCAGTCATGGCTAAAGCTAT+TGG | + | chr8_3:43100514-43100533 | Msa1289240:CDS | 45.0% | |
| CATGGCTAAAGCTATTGGAG+AGG | + | chr8_3:43100519-43100538 | Msa1289240:CDS | 45.0% | |
| ATGTGACCAAGGAAGGAGTG+TGG | + | chr8_3:43099918-43099937 | Msa1289240:CDS | 50.0% | |
| ATGTGACCAAGGAAGGAGTG+TGG | + | chr8_3:43099918-43099937 | Msa1289240:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 43099626 | 43100615 | 43099626 | ID=Msa1289240;Name=Msa1289240 |
| chr8_3 | mRNA | 43099626 | 43100615 | 43099626 | ID=Msa1289240-mRNA-1;Parent=Msa1289240;Name=Msa1289240-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|-1|0|1|-1|1|1|0|329 |
| chr8_3 | exon | 43099626 | 43100615 | 43099626 | ID=Msa1289240-mRNA-1:exon:11758;Parent=Msa1289240-mRNA-1 |
| chr8_3 | CDS | 43099626 | 43100615 | 43099626 | ID=Msa1289240-mRNA-1:cds;Parent=Msa1289240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
