Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1289630 | XP_024629447.1 | 95.407 | 675 | 18 | 1 | 1 | 662 | 1 | 675 | 0.0 | 1346 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1289630 | sp|Q9SZL8|FRS5_ARATH | 34.326 | 571 | 352 | 9 | 18 | 569 | 74 | 640 | 1.80e-105 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1289630 | A0A396GJD5 | 95.407 | 675 | 18 | 1 | 1 | 662 | 1 | 675 | 0.0 | 1346 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1289630 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1289630 | MtrunA17_Chr8g0363841 | 95.407 | 675 | 18 | 1 | 1 | 662 | 1 | 675 | 0.0 | 1346 |
| Msa1289630 | MtrunA17_Chr1g0202341 | 32.897 | 611 | 371 | 12 | 5 | 586 | 35 | 635 | 1.31e-105 | 335 |
| Msa1289630 | MtrunA17_Chr6g0458391 | 34.054 | 555 | 341 | 10 | 19 | 564 | 227 | 765 | 1.48e-102 | 329 |
| Msa1289630 | MtrunA17_Chr5g0448761 | 32.238 | 639 | 400 | 13 | 20 | 636 | 63 | 690 | 3.66e-100 | 323 |
| Msa1289630 | MtrunA17_Chr2g0324011 | 32.925 | 571 | 344 | 11 | 19 | 564 | 12 | 568 | 5.78e-100 | 318 |
| Msa1289630 | MtrunA17_Chr5g0440451 | 30.623 | 578 | 353 | 10 | 18 | 564 | 44 | 604 | 6.13e-92 | 305 |
| Msa1289630 | MtrunA17_Chr3g0082121 | 33.032 | 554 | 343 | 9 | 25 | 564 | 51 | 590 | 6.87e-91 | 297 |
| Msa1289630 | MtrunA17_Chr1g0207551 | 31.261 | 563 | 359 | 9 | 20 | 564 | 37 | 589 | 3.41e-88 | 292 |
| Msa1289630 | MtrunA17_Chr2g0329031 | 29.573 | 656 | 410 | 17 | 25 | 662 | 22 | 643 | 2.37e-86 | 286 |
| Msa1289630 | MtrunA17_Chr1g0203721 | 31.065 | 573 | 354 | 12 | 19 | 564 | 65 | 623 | 6.54e-86 | 288 |
| Msa1289630 | MtrunA17_Chr2g0287651 | 30.981 | 581 | 359 | 11 | 9 | 565 | 71 | 633 | 1.69e-84 | 284 |
| Msa1289630 | MtrunA17_Chr2g0296781 | 31.239 | 573 | 340 | 10 | 25 | 564 | 5 | 556 | 3.84e-82 | 274 |
| Msa1289630 | MtrunA17_Chr2g0287061 | 31.986 | 569 | 344 | 12 | 7 | 568 | 173 | 705 | 4.10e-82 | 276 |
| Msa1289630 | MtrunA17_Chr5g0441581 | 30.783 | 549 | 362 | 9 | 27 | 564 | 42 | 583 | 4.60e-82 | 273 |
| Msa1289630 | MtrunA17_Chr5g0448511 | 32.456 | 456 | 298 | 5 | 176 | 630 | 10 | 456 | 6.61e-82 | 269 |
| Msa1289630 | MtrunA17_Chr3g0080351 | 29.930 | 568 | 352 | 10 | 20 | 564 | 79 | 623 | 3.56e-79 | 269 |
| Msa1289630 | MtrunA17_Chr3g0118611 | 34.961 | 389 | 248 | 4 | 178 | 565 | 118 | 502 | 7.01e-78 | 264 |
| Msa1289630 | MtrunA17_Chr1g0203051 | 28.096 | 541 | 367 | 6 | 26 | 551 | 88 | 621 | 5.49e-75 | 253 |
| Msa1289630 | MtrunA17_Chr6g0477261 | 34.118 | 425 | 244 | 6 | 160 | 564 | 37 | 445 | 5.42e-74 | 251 |
| Msa1289630 | MtrunA17_Chr1g0198761 | 29.310 | 580 | 362 | 12 | 17 | 563 | 47 | 611 | 3.89e-73 | 251 |
| Msa1289630 | MtrunA17_Chr2g0291581 | 28.284 | 647 | 429 | 9 | 5 | 631 | 49 | 680 | 9.73e-72 | 245 |
| Msa1289630 | MtrunA17_Chr2g0291591 | 30.849 | 483 | 306 | 7 | 7 | 476 | 63 | 530 | 2.21e-70 | 239 |
| Msa1289630 | MtrunA17_Chr1g0196541 | 28.159 | 554 | 376 | 8 | 25 | 561 | 5 | 553 | 8.66e-66 | 230 |
| Msa1289630 | MtrunA17_Chr2g0276841 | 25.888 | 676 | 425 | 13 | 8 | 646 | 61 | 697 | 1.20e-63 | 223 |
| Msa1289630 | MtrunA17_Chr2g0294841 | 27.352 | 574 | 369 | 10 | 18 | 559 | 46 | 603 | 1.10e-61 | 219 |
| Msa1289630 | MtrunA17_Chr1g0164591 | 35.922 | 309 | 175 | 5 | 101 | 395 | 8 | 307 | 1.24e-57 | 197 |
| Msa1289630 | MtrunA17_Chr2g0290391 | 27.227 | 595 | 372 | 13 | 14 | 569 | 45 | 617 | 1.75e-57 | 206 |
| Msa1289630 | MtrunA17_Chr5g0431001 | 29.117 | 419 | 261 | 8 | 20 | 408 | 64 | 476 | 1.90e-47 | 174 |
| Msa1289630 | MtrunA17_Chr7g0258861 | 30.662 | 287 | 176 | 6 | 19 | 286 | 12 | 294 | 8.79e-38 | 142 |
| Msa1289630 | MtrunA17_Chr1g0149131 | 32.143 | 112 | 75 | 1 | 283 | 393 | 1 | 112 | 9.84e-16 | 73.9 |
| Msa1289630 | MtrunA17_Chr2g0308841 | 23.111 | 225 | 166 | 2 | 342 | 563 | 6 | 226 | 1.40e-15 | 77.4 |
| Msa1289630 | MtrunA17_Chr2g0329421 | 30.088 | 113 | 75 | 2 | 12 | 124 | 25 | 133 | 3.58e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1289630 | AT4G38180.1 | 34.326 | 571 | 352 | 9 | 18 | 569 | 74 | 640 | 1.83e-106 | 340 |
| Msa1289630 | AT2G27110.2 | 30.222 | 632 | 391 | 12 | 19 | 637 | 51 | 645 | 1.27e-92 | 305 |
| Msa1289630 | AT2G27110.1 | 30.222 | 632 | 391 | 12 | 19 | 637 | 51 | 645 | 1.27e-92 | 305 |
| Msa1289630 | AT4G15090.1 | 30.912 | 592 | 373 | 12 | 13 | 584 | 50 | 625 | 9.28e-86 | 286 |
| Msa1289630 | AT4G15090.5 | 30.912 | 592 | 373 | 12 | 13 | 584 | 50 | 625 | 9.28e-86 | 286 |
| Msa1289630 | AT4G15090.3 | 30.912 | 592 | 373 | 12 | 13 | 584 | 50 | 625 | 9.28e-86 | 286 |
| Msa1289630 | AT4G15090.2 | 30.912 | 592 | 373 | 12 | 13 | 584 | 50 | 625 | 9.28e-86 | 286 |
| Msa1289630 | AT4G15090.4 | 30.912 | 592 | 373 | 12 | 13 | 584 | 50 | 625 | 9.28e-86 | 286 |
| Msa1289630 | AT2G27110.3 | 33.262 | 466 | 289 | 7 | 178 | 637 | 51 | 500 | 1.51e-85 | 283 |
| Msa1289630 | AT3G22170.2 | 31.023 | 577 | 357 | 11 | 20 | 575 | 73 | 629 | 5.85e-84 | 282 |
| Msa1289630 | AT3G22170.1 | 31.023 | 577 | 357 | 11 | 20 | 575 | 73 | 629 | 5.85e-84 | 282 |
| Msa1289630 | AT3G06250.2 | 31.028 | 564 | 344 | 12 | 4 | 563 | 181 | 703 | 1.02e-82 | 277 |
| Msa1289630 | AT3G06250.1 | 31.028 | 564 | 344 | 12 | 4 | 563 | 181 | 703 | 1.02e-82 | 277 |
| Msa1289630 | AT3G06250.3 | 31.028 | 564 | 344 | 12 | 4 | 563 | 181 | 703 | 1.02e-82 | 277 |
| Msa1289630 | AT4G19990.3 | 30.118 | 591 | 356 | 10 | 1 | 565 | 1 | 560 | 7.87e-82 | 274 |
| Msa1289630 | AT4G19990.4 | 30.118 | 591 | 356 | 10 | 1 | 565 | 1 | 560 | 7.87e-82 | 274 |
| Msa1289630 | AT4G19990.5 | 30.118 | 591 | 356 | 10 | 1 | 565 | 1 | 560 | 8.29e-82 | 274 |
| Msa1289630 | AT4G19990.6 | 30.118 | 591 | 356 | 10 | 1 | 565 | 1 | 560 | 2.46e-81 | 273 |
| Msa1289630 | AT4G19990.2 | 30.118 | 591 | 356 | 10 | 1 | 565 | 1 | 560 | 2.46e-81 | 273 |
| Msa1289630 | AT4G19990.7 | 30.153 | 587 | 353 | 10 | 5 | 565 | 19 | 574 | 3.07e-81 | 273 |
| Msa1289630 | AT1G76320.3 | 29.967 | 604 | 391 | 13 | 25 | 618 | 5 | 586 | 9.51e-80 | 267 |
| Msa1289630 | AT1G76320.1 | 29.967 | 604 | 391 | 13 | 25 | 618 | 5 | 586 | 3.06e-79 | 267 |
| Msa1289630 | AT1G76320.4 | 29.967 | 604 | 391 | 13 | 25 | 618 | 5 | 586 | 3.06e-79 | 267 |
| Msa1289630 | AT1G76320.2 | 29.967 | 604 | 391 | 13 | 25 | 618 | 5 | 586 | 3.58e-79 | 266 |
| Msa1289630 | AT4G19990.1 | 32.231 | 484 | 302 | 6 | 84 | 565 | 44 | 503 | 7.17e-77 | 259 |
| Msa1289630 | AT5G18960.2 | 29.983 | 577 | 365 | 12 | 2 | 575 | 199 | 739 | 2.40e-76 | 260 |
| Msa1289630 | AT5G18960.1 | 29.983 | 577 | 365 | 12 | 2 | 575 | 199 | 739 | 2.40e-76 | 260 |
| Msa1289630 | AT4G38170.1 | 30.789 | 393 | 264 | 5 | 182 | 572 | 21 | 407 | 4.67e-67 | 229 |
| Msa1289630 | AT1G52520.1 | 27.817 | 568 | 391 | 6 | 10 | 566 | 81 | 640 | 4.75e-66 | 231 |
| Msa1289630 | AT2G32250.5 | 27.057 | 547 | 361 | 9 | 20 | 563 | 41 | 552 | 8.72e-64 | 225 |
| Msa1289630 | AT5G28530.3 | 26.878 | 599 | 382 | 12 | 18 | 580 | 56 | 634 | 9.82e-64 | 224 |
| Msa1289630 | AT5G28530.2 | 26.878 | 599 | 382 | 12 | 18 | 580 | 56 | 634 | 9.82e-64 | 224 |
| Msa1289630 | AT2G32250.2 | 27.057 | 547 | 361 | 9 | 20 | 563 | 41 | 552 | 1.84e-63 | 225 |
| Msa1289630 | AT2G32250.4 | 27.057 | 547 | 361 | 9 | 20 | 563 | 41 | 552 | 1.84e-63 | 225 |
| Msa1289630 | AT2G32250.6 | 27.057 | 547 | 361 | 9 | 20 | 563 | 41 | 552 | 1.87e-63 | 225 |
| Msa1289630 | AT2G32250.1 | 27.057 | 547 | 361 | 9 | 20 | 563 | 41 | 552 | 1.87e-63 | 225 |
| Msa1289630 | AT2G32250.3 | 27.057 | 547 | 361 | 9 | 20 | 563 | 41 | 552 | 1.87e-63 | 225 |
| Msa1289630 | AT2G32250.8 | 27.122 | 542 | 357 | 9 | 25 | 563 | 5 | 511 | 2.29e-63 | 224 |
| Msa1289630 | AT2G32250.7 | 27.122 | 542 | 357 | 9 | 25 | 563 | 5 | 511 | 2.43e-63 | 224 |
| Msa1289630 | AT5G28530.1 | 27.212 | 599 | 384 | 13 | 18 | 580 | 56 | 638 | 6.32e-63 | 221 |
| Msa1289630 | AT1G80010.1 | 26.923 | 650 | 408 | 17 | 20 | 631 | 98 | 718 | 7.88e-63 | 222 |
| Msa1289630 | AT1G10240.2 | 28.308 | 650 | 394 | 18 | 18 | 632 | 49 | 661 | 1.01e-62 | 221 |
| Msa1289630 | AT1G10240.1 | 28.308 | 650 | 394 | 18 | 18 | 632 | 49 | 661 | 1.01e-62 | 221 |
| Msa1289630 | AT5G28530.5 | 24.042 | 574 | 367 | 14 | 18 | 580 | 56 | 571 | 2.53e-42 | 162 |
| Msa1289630 | AT5G28530.4 | 24.390 | 574 | 369 | 15 | 18 | 580 | 56 | 575 | 1.43e-41 | 160 |
Find 105 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGTCATCGTTTATGTTTA+TGG | 0.156730 | 8_3:+43853431 | Msa1289630:CDS |
| TTCTACATCTGAATTTAAAT+TGG | 0.221172 | 8_3:-43854412 | None:intergenic |
| TTGCGGATTTATAACATTAA+AGG | 0.223732 | 8_3:+43854117 | Msa1289630:CDS |
| CTTGTGCTTGTTTACTTTGT+AGG | 0.250825 | 8_3:-43853057 | None:intergenic |
| TGTGGAAATTACTTGATATT+GGG | 0.256264 | 8_3:+43854358 | Msa1289630:CDS |
| CACGTTTGACCAATGTCTTT+TGG | 0.263428 | 8_3:+43853119 | Msa1289630:CDS |
| ATGTGGAAATTACTTGATAT+TGG | 0.266059 | 8_3:+43854357 | Msa1289630:CDS |
| GAAAGTTACCAAGTTGATAT+TGG | 0.311387 | 8_3:+43852817 | Msa1289630:CDS |
| ACTACAATTAATCTTCATAT+TGG | 0.315911 | 8_3:-43854052 | None:intergenic |
| AAGAATGCTCCTTCACCTTT+GGG | 0.317929 | 8_3:+43853463 | Msa1289630:CDS |
| TAGTTGATTATAATTGCTTT+GGG | 0.318625 | 8_3:+43853158 | Msa1289630:CDS |
| CAAGAGCATGCTTTCAAAAC+AGG | 0.323625 | 8_3:+43852602 | Msa1289630:CDS |
| TAAGAATGCTCCTTCACCTT+TGG | 0.335826 | 8_3:+43853462 | Msa1289630:CDS |
| CCAGTCATGGCTAAAGCTAT+TGG | 0.338402 | 8_3:+43853391 | Msa1289630:CDS |
| GTAGTTGATTATAATTGCTT+TGG | 0.349226 | 8_3:+43853157 | Msa1289630:CDS |
| AACTTTCCACACTCCTTCCT+TGG | 0.367826 | 8_3:-43852801 | None:intergenic |
| TTGCCGCAAGTTTGATTCAA+TGG | 0.373385 | 8_3:+43854074 | Msa1289630:CDS |
| AGAAGACCGCATAAAGTCTT+TGG | 0.373881 | 8_3:+43852913 | Msa1289630:CDS |
| GCCATTAGAGTTACAAATAG+TGG | 0.377299 | 8_3:+43852944 | Msa1289630:CDS |
| TTTCTAAATGAGTATCTTGA+AGG | 0.382168 | 8_3:+43853919 | Msa1289630:CDS |
| TATAAGCAGTGCTCCACTTA+TGG | 0.383579 | 8_3:-43853639 | None:intergenic |
| ATCATCATTGATCACTGAAA+TGG | 0.387294 | 8_3:-43854244 | None:intergenic |
| GTCATTCTACCATCTAGTTT+CGG | 0.391713 | 8_3:+43854302 | Msa1289630:CDS |
| GAGCCTAGAGATATTTATCT+TGG | 0.393295 | 8_3:+43852539 | Msa1289630:CDS |
| CTAGGCTCATCAGTTTCAAT+TGG | 0.394540 | 8_3:-43852524 | None:intergenic |
| TATGCGGTCTTCTTTGAGAT+TGG | 0.397384 | 8_3:-43852903 | None:intergenic |
| CTTGACTTTCCGAAACTAGA+TGG | 0.401068 | 8_3:-43854311 | None:intergenic |
| CCCACTATTTGTAACTCTAA+TGG | 0.401145 | 8_3:-43852945 | None:intergenic |
| AAGAAGAATTTCAAAGAACT+TGG | 0.405034 | 8_3:+43853551 | Msa1289630:CDS |
| TTATAAGCCACTTCACCATC+AGG | 0.415225 | 8_3:-43852728 | None:intergenic |
| CATAAACGATGACATGCATT+TGG | 0.419056 | 8_3:-43853424 | None:intergenic |
| TAAATATTAGTGAAACATTA+CGG | 0.422498 | 8_3:+43853857 | Msa1289630:CDS |
| TGAGCACATGCCTAGGGGTA+TGG | 0.429091 | 8_3:+43854206 | Msa1289630:CDS |
| TGTTTGTACTCTCAATCCTT+TGG | 0.442113 | 8_3:-43853696 | None:intergenic |
| TGCCGCAAGTTTGATTCAAT+GGG | 0.448344 | 8_3:+43854075 | Msa1289630:CDS |
| CATTGGTCAAACGTGATTCA+TGG | 0.448744 | 8_3:-43853111 | None:intergenic |
| TGTACTCTCAATCCTTTGGC+AGG | 0.451258 | 8_3:-43853692 | None:intergenic |
| CACTGGCAAAATGTCATGTT+CGG | 0.451736 | 8_3:+43853259 | Msa1289630:CDS |
| TTCTTTGTAGTCATGCTTTG+CGG | 0.453705 | 8_3:+43854100 | Msa1289630:CDS |
| AATGAGTATCTTGAAGGAAC+AGG | 0.455830 | 8_3:+43853925 | Msa1289630:CDS |
| CAGTAAAGATTGAGCATCTC+CGG | 0.467376 | 8_3:-43853029 | None:intergenic |
| TAACAAGAGGACGTGTACTT+TGG | 0.474697 | 8_3:-43853834 | None:intergenic |
| AACAAATATCTTTGCTGAAG+TGG | 0.482406 | 8_3:-43852860 | None:intergenic |
| TGTATGAAATTCGCCATAAG+TGG | 0.485780 | 8_3:+43853626 | Msa1289630:CDS |
| AAGAACAAATTGCTTAGCTA+TGG | 0.488702 | 8_3:+43852763 | Msa1289630:CDS |
| CCATTAGAGTTACAAATAGT+GGG | 0.491139 | 8_3:+43852945 | Msa1289630:CDS |
| CCAATAGCTTTAGCCATGAC+TGG | 0.491941 | 8_3:-43853391 | None:intergenic |
| AGCAAGAATGTATTCTCTGC+TGG | 0.493952 | 8_3:+43853661 | Msa1289630:CDS |
| AACATTACGGCATGCATCTA+CGG | 0.494329 | 8_3:+43853870 | Msa1289630:CDS |
| GAGCACATGCCTAGGGGTAT+GGG | 0.504100 | 8_3:+43854207 | Msa1289630:CDS |
| AAACTTATTTAGTAAATGCA+TGG | 0.516926 | 8_3:+43853513 | Msa1289630:CDS |
| ATGCATAATTATGTCTCCAC+TGG | 0.517136 | 8_3:+43852986 | Msa1289630:CDS |
| TGATGATTTACACCAACAAA+GGG | 0.519166 | 8_3:-43853238 | None:intergenic |
| AAGTTGAAATTTATCGAAGC+CGG | 0.519905 | 8_3:+43853010 | Msa1289630:CDS |
| TGATTTATGAGCACATGCCT+AGG | 0.520789 | 8_3:+43854199 | Msa1289630:CDS |
| AAGAAGCTCAAAATATTATG+TGG | 0.525327 | 8_3:+43854340 | Msa1289630:CDS |
| CTGTACACTGTAATAGAACA+TGG | 0.527444 | 8_3:-43853083 | None:intergenic |
| GTGGCGCCGCATAGAGGTTG+AGG | 0.528015 | 8_3:+43853795 | Msa1289630:CDS |
| TGACCAAGATAAATATCTCT+AGG | 0.529714 | 8_3:-43852542 | None:intergenic |
| TCACTAATATTTATAACAAG+AGG | 0.530721 | 8_3:-43853847 | None:intergenic |
| AGATTTAATGTGACCAAGGA+AGG | 0.533919 | 8_3:+43852788 | Msa1289630:CDS |
| AGAAGAATTTCAAAGAACTT+GGG | 0.538433 | 8_3:+43853552 | Msa1289630:CDS |
| GGAAACATGCTTCAGACCAT+TGG | 0.541782 | 8_3:+43854464 | Msa1289630:CDS |
| GATTTATGAGCACATGCCTA+GGG | 0.541821 | 8_3:+43854200 | Msa1289630:CDS |
| ATGAGAGAACCCAAAGGTGA+AGG | 0.542618 | 8_3:-43853472 | None:intergenic |
| ACTTGATATTGGGGCTGAGA+GGG | 0.547189 | 8_3:+43854368 | Msa1289630:CDS |
| TTGTTGGTGTAAATCATCAC+TGG | 0.548421 | 8_3:+43853242 | Msa1289630:CDS |
| TTATTTAGTAAATGCATGGA+AGG | 0.550033 | 8_3:+43853517 | Msa1289630:CDS |
| ATAAGCTTCAAGATCATCAA+TGG | 0.550335 | 8_3:+43853593 | Msa1289630:CDS |
| GTGGAAATTACTTGATATTG+GGG | 0.556011 | 8_3:+43854359 | Msa1289630:CDS |
| AGCATTGCGATAAAGAATAC+CGG | 0.559831 | 8_3:-43854271 | None:intergenic |
| AATATATCAATTCAGACCAA+TGG | 0.559963 | 8_3:-43854480 | None:intergenic |
| GATAAATTTCAACTTTCCAG+TGG | 0.566800 | 8_3:-43853002 | None:intergenic |
| GAGAGGGTGCGAAAAGGTGT+TGG | 0.567841 | 8_3:+43854384 | Msa1289630:CDS |
| GACAAATGTCAATGAAAATG+AGG | 0.573327 | 8_3:+43854443 | Msa1289630:CDS |
| ACCATCTCTCCAAAAGACAT+TGG | 0.577280 | 8_3:-43853128 | None:intergenic |
| GGGGCTGAGAGGGTGCGAAA+AGG | 0.580980 | 8_3:+43854378 | Msa1289630:CDS |
| TACTTGATATTGGGGCTGAG+AGG | 0.584455 | 8_3:+43854367 | Msa1289630:CDS |
| GAGTATCTTGAAGGAACAGG+TGG | 0.588038 | 8_3:+43853928 | Msa1289630:CDS |
| GGTGCGAAAAGGTGTTGGCA+AGG | 0.590379 | 8_3:+43854389 | Msa1289630:CDS |
| TGAGAGTACAAACAATGTGT+TGG | 0.597259 | 8_3:+43853705 | Msa1289630:CDS |
| AAATTCAGATGTAGAAACAA+TGG | 0.600557 | 8_3:+43854419 | Msa1289630:CDS |
| ATCATTGATCACTGAAATGG+AGG | 0.600594 | 8_3:-43854241 | None:intergenic |
| TACAGCTCATCATCCAGTCA+TGG | 0.601411 | 8_3:+43853378 | Msa1289630:CDS |
| CATTCACCAAAGACTTTATG+CGG | 0.602476 | 8_3:-43852919 | None:intergenic |
| GTGATGATTTACACCAACAA+AGG | 0.603401 | 8_3:-43853239 | None:intergenic |
| GAATCTTCTCCCATACCCCT+AGG | 0.605803 | 8_3:-43854216 | None:intergenic |
| TGCCCATTGAATCAAACTTG+CGG | 0.606774 | 8_3:-43854077 | None:intergenic |
| CAATGAACCTGATGGTGAAG+TGG | 0.607386 | 8_3:+43852721 | Msa1289630:CDS |
| GTGATCAATGATGATGATGC+CGG | 0.629234 | 8_3:+43854252 | Msa1289630:CDS |
| ATTGTGATCCAATATCAACT+TGG | 0.629329 | 8_3:-43852825 | None:intergenic |
| AGGCATGTGCTCATAAATCA+CGG | 0.631426 | 8_3:-43854196 | None:intergenic |
| CATTAGAGTTACAAATAGTG+GGG | 0.634264 | 8_3:+43852946 | Msa1289630:CDS |
| CTGGTATCAAGTCCTGCCAA+AGG | 0.634306 | 8_3:+43853680 | Msa1289630:CDS |
| ATGTGACCAAGGAAGGAGTG+TGG | 0.636883 | 8_3:+43852795 | Msa1289630:CDS |
| GGTCAGATTTAATGTGACCA+AGG | 0.650278 | 8_3:+43852784 | Msa1289630:CDS |
| ATGATTTACACCAACAAAGG+GGG | 0.665077 | 8_3:-43853236 | None:intergenic |
| GCGCCGCATAGAGGTTGAGG+AGG | 0.668856 | 8_3:+43853798 | Msa1289630:CDS |
| CATGGCTAAAGCTATTGGAG+AGG | 0.672491 | 8_3:+43853396 | Msa1289630:CDS |
| TCAGAAATGAGAGAACCCAA+AGG | 0.693087 | 8_3:-43853478 | None:intergenic |
| ATTAGAGTTACAAATAGTGG+GGG | 0.695167 | 8_3:+43852947 | Msa1289630:CDS |
| GATGATTTACACCAACAAAG+GGG | 0.699550 | 8_3:-43853237 | None:intergenic |
| AGTTGATTATAATTGCTTTG+GGG | 0.699964 | 8_3:+43853159 | Msa1289630:CDS |
| ATTTATGAGCACATGCCTAG+GGG | 0.718468 | 8_3:+43854201 | Msa1289630:CDS |
| ATTCCTCCTCAACCTCTATG+CGG | 0.727553 | 8_3:-43853801 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATATTAGTGAAACATTA+CGG | + | chr8_3:43853857-43853876 | Msa1289630:CDS | 15.0% |
| !! | TAAATATTAGTGAAACATTA+CGG | + | chr8_3:43853857-43853876 | Msa1289630:CDS | 15.0% |
| !!! | ATTGTTTTTAAATCCTTGTT+TGG | - | chr8_3:43852705-43852724 | None:intergenic | 20.0% |
| !! | TAGTTGATTATAATTGCTTT+GGG | + | chr8_3:43853158-43853177 | Msa1289630:CDS | 20.0% |
| !! | AAACTTATTTAGTAAATGCA+TGG | + | chr8_3:43853513-43853532 | Msa1289630:CDS | 20.0% |
| !! | TCACTAATATTTATAACAAG+AGG | - | chr8_3:43853850-43853869 | None:intergenic | 20.0% |
| !!! | CATATTTTTTATTAGGCTTA+TGG | - | chr8_3:43854014-43854033 | None:intergenic | 20.0% |
| !! | TAAGCCTAATAAAAAATATG+TGG | + | chr8_3:43854014-43854033 | Msa1289630:CDS | 20.0% |
| !! | ACTACAATTAATCTTCATAT+TGG | - | chr8_3:43854055-43854074 | None:intergenic | 20.0% |
| !! | TTCTACATCTGAATTTAAAT+TGG | - | chr8_3:43854415-43854434 | None:intergenic | 20.0% |
| !!! | ATTGTTTTTAAATCCTTGTT+TGG | - | chr8_3:43852705-43852724 | None:intergenic | 20.0% |
| !! | TAGTTGATTATAATTGCTTT+GGG | + | chr8_3:43853158-43853177 | Msa1289630:CDS | 20.0% |
| !! | AAACTTATTTAGTAAATGCA+TGG | + | chr8_3:43853513-43853532 | Msa1289630:CDS | 20.0% |
| !! | TCACTAATATTTATAACAAG+AGG | - | chr8_3:43853850-43853869 | None:intergenic | 20.0% |
| !!! | CATATTTTTTATTAGGCTTA+TGG | - | chr8_3:43854014-43854033 | None:intergenic | 20.0% |
| !! | TAAGCCTAATAAAAAATATG+TGG | + | chr8_3:43854014-43854033 | Msa1289630:CDS | 20.0% |
| !! | ACTACAATTAATCTTCATAT+TGG | - | chr8_3:43854055-43854074 | None:intergenic | 20.0% |
| !! | TTCTACATCTGAATTTAAAT+TGG | - | chr8_3:43854415-43854434 | None:intergenic | 20.0% |
| ! | TTTAAAAACAATGAACCTGA+TGG | + | chr8_3:43852713-43852732 | Msa1289630:CDS | 25.0% |
| ! | GTAGTTGATTATAATTGCTT+TGG | + | chr8_3:43853157-43853176 | Msa1289630:CDS | 25.0% |
| ! | AGTTGATTATAATTGCTTTG+GGG | + | chr8_3:43853159-43853178 | Msa1289630:CDS | 25.0% |
| !! | AAAGTGAAATTTCTTTTGCT+TGG | + | chr8_3:43853302-43853321 | Msa1289630:CDS | 25.0% |
| !!! | TAAAGATTGTTTTTGGTTGT+TGG | - | chr8_3:43853360-43853379 | None:intergenic | 25.0% |
| ! | TTATTTAGTAAATGCATGGA+AGG | + | chr8_3:43853517-43853536 | Msa1289630:CDS | 25.0% |
| ! | AAGAAGAATTTCAAAGAACT+TGG | + | chr8_3:43853551-43853570 | Msa1289630:CDS | 25.0% |
| ! | AGAAGAATTTCAAAGAACTT+GGG | + | chr8_3:43853552-43853571 | Msa1289630:CDS | 25.0% |
| ! | TTTCTAAATGAGTATCTTGA+AGG | + | chr8_3:43853919-43853938 | Msa1289630:CDS | 25.0% |
| !!! | GTCACCACATATTTTTTATT+AGG | - | chr8_3:43854021-43854040 | None:intergenic | 25.0% |
| ! | TTGCGGATTTATAACATTAA+AGG | + | chr8_3:43854117-43854136 | Msa1289630:CDS | 25.0% |
| ! | ACCAATACTTCTTAAAAAGA+TGG | + | chr8_3:43854157-43854176 | Msa1289630:CDS | 25.0% |
| !!! | ACCATCTTTTTAAGAAGTAT+TGG | - | chr8_3:43854161-43854180 | None:intergenic | 25.0% |
| ! | AAGAAGCTCAAAATATTATG+TGG | + | chr8_3:43854340-43854359 | Msa1289630:CDS | 25.0% |
| ! | ATGTGGAAATTACTTGATAT+TGG | + | chr8_3:43854357-43854376 | Msa1289630:CDS | 25.0% |
| ! | TGTGGAAATTACTTGATATT+GGG | + | chr8_3:43854358-43854377 | Msa1289630:CDS | 25.0% |
| ! | AAATTCAGATGTAGAAACAA+TGG | + | chr8_3:43854419-43854438 | Msa1289630:CDS | 25.0% |
| ! | TTTAAAAACAATGAACCTGA+TGG | + | chr8_3:43852713-43852732 | Msa1289630:CDS | 25.0% |
| ! | GTAGTTGATTATAATTGCTT+TGG | + | chr8_3:43853157-43853176 | Msa1289630:CDS | 25.0% |
| ! | AGTTGATTATAATTGCTTTG+GGG | + | chr8_3:43853159-43853178 | Msa1289630:CDS | 25.0% |
| !! | AAAGTGAAATTTCTTTTGCT+TGG | + | chr8_3:43853302-43853321 | Msa1289630:CDS | 25.0% |
| !!! | TAAAGATTGTTTTTGGTTGT+TGG | - | chr8_3:43853360-43853379 | None:intergenic | 25.0% |
| ! | TTATTTAGTAAATGCATGGA+AGG | + | chr8_3:43853517-43853536 | Msa1289630:CDS | 25.0% |
| ! | AAGAAGAATTTCAAAGAACT+TGG | + | chr8_3:43853551-43853570 | Msa1289630:CDS | 25.0% |
| ! | AGAAGAATTTCAAAGAACTT+GGG | + | chr8_3:43853552-43853571 | Msa1289630:CDS | 25.0% |
| ! | TTTCTAAATGAGTATCTTGA+AGG | + | chr8_3:43853919-43853938 | Msa1289630:CDS | 25.0% |
| !!! | GTCACCACATATTTTTTATT+AGG | - | chr8_3:43854021-43854040 | None:intergenic | 25.0% |
| ! | TTGCGGATTTATAACATTAA+AGG | + | chr8_3:43854117-43854136 | Msa1289630:CDS | 25.0% |
| ! | ACCAATACTTCTTAAAAAGA+TGG | + | chr8_3:43854157-43854176 | Msa1289630:CDS | 25.0% |
| !!! | ACCATCTTTTTAAGAAGTAT+TGG | - | chr8_3:43854161-43854180 | None:intergenic | 25.0% |
| ! | AAGAAGCTCAAAATATTATG+TGG | + | chr8_3:43854340-43854359 | Msa1289630:CDS | 25.0% |
| ! | ATGTGGAAATTACTTGATAT+TGG | + | chr8_3:43854357-43854376 | Msa1289630:CDS | 25.0% |
| ! | TGTGGAAATTACTTGATATT+GGG | + | chr8_3:43854358-43854377 | Msa1289630:CDS | 25.0% |
| ! | AAATTCAGATGTAGAAACAA+TGG | + | chr8_3:43854419-43854438 | Msa1289630:CDS | 25.0% |
| TGACCAAGATAAATATCTCT+AGG | - | chr8_3:43852545-43852564 | None:intergenic | 30.0% | |
| !! | AACAGGTTTTAGTGTAAGAA+AGG | + | chr8_3:43852619-43852638 | Msa1289630:CDS | 30.0% |
| !! | ACAGGTTTTAGTGTAAGAAA+GGG | + | chr8_3:43852620-43852639 | Msa1289630:CDS | 30.0% |
| GAAAAAGAAAACACGTTTGA+AGG | + | chr8_3:43852667-43852686 | Msa1289630:CDS | 30.0% | |
| ! | GATTTTTATTGCTCCAAACA+AGG | + | chr8_3:43852689-43852708 | Msa1289630:CDS | 30.0% |
| AAGAACAAATTGCTTAGCTA+TGG | + | chr8_3:43852763-43852782 | Msa1289630:CDS | 30.0% | |
| !! | GAAAGTTACCAAGTTGATAT+TGG | + | chr8_3:43852817-43852836 | Msa1289630:CDS | 30.0% |
| ATTGTGATCCAATATCAACT+TGG | - | chr8_3:43852828-43852847 | None:intergenic | 30.0% | |
| AACAAATATCTTTGCTGAAG+TGG | - | chr8_3:43852863-43852882 | None:intergenic | 30.0% | |
| CCATTAGAGTTACAAATAGT+GGG | + | chr8_3:43852945-43852964 | Msa1289630:CDS | 30.0% | |
| CATTAGAGTTACAAATAGTG+GGG | + | chr8_3:43852946-43852965 | Msa1289630:CDS | 30.0% | |
| ATTAGAGTTACAAATAGTGG+GGG | + | chr8_3:43852947-43852966 | Msa1289630:CDS | 30.0% | |
| GATAAATTTCAACTTTCCAG+TGG | - | chr8_3:43853005-43853024 | None:intergenic | 30.0% | |
| AAGTTGAAATTTATCGAAGC+CGG | + | chr8_3:43853010-43853029 | Msa1289630:CDS | 30.0% | |
| TGATGATTTACACCAACAAA+GGG | - | chr8_3:43853241-43853260 | None:intergenic | 30.0% | |
| !! | TTGGTTGTTCAAAGCATTTT+TGG | + | chr8_3:43853321-43853340 | Msa1289630:CDS | 30.0% |
| !! | AAAGCATTTTTGGAGAGTAT+GGG | + | chr8_3:43853331-43853350 | Msa1289630:CDS | 30.0% |
| ! | TGAGCTGTAAAGATTGTTTT+TGG | - | chr8_3:43853367-43853386 | None:intergenic | 30.0% |
| CATGTCATCGTTTATGTTTA+TGG | + | chr8_3:43853431-43853450 | Msa1289630:CDS | 30.0% | |
| ATAAGCTTCAAGATCATCAA+TGG | + | chr8_3:43853593-43853612 | Msa1289630:CDS | 30.0% | |
| TTGAGAAGATGTTGAAAAAG+TGG | + | chr8_3:43853776-43853795 | Msa1289630:CDS | 30.0% | |
| !!! | CTTTTTAAGAAGTATTGGTC+AGG | - | chr8_3:43854156-43854175 | None:intergenic | 30.0% |
| AAAGATGGTCAAAAAATGCA+AGG | + | chr8_3:43854172-43854191 | Msa1289630:CDS | 30.0% | |
| ATCATCATTGATCACTGAAA+TGG | - | chr8_3:43854247-43854266 | None:intergenic | 30.0% | |
| GTGGAAATTACTTGATATTG+GGG | + | chr8_3:43854359-43854378 | Msa1289630:CDS | 30.0% | |
| GACAAATGTCAATGAAAATG+AGG | + | chr8_3:43854443-43854462 | Msa1289630:CDS | 30.0% | |
| TGACCAAGATAAATATCTCT+AGG | - | chr8_3:43852545-43852564 | None:intergenic | 30.0% | |
| !! | AACAGGTTTTAGTGTAAGAA+AGG | + | chr8_3:43852619-43852638 | Msa1289630:CDS | 30.0% |
| !! | ACAGGTTTTAGTGTAAGAAA+GGG | + | chr8_3:43852620-43852639 | Msa1289630:CDS | 30.0% |
| GAAAAAGAAAACACGTTTGA+AGG | + | chr8_3:43852667-43852686 | Msa1289630:CDS | 30.0% | |
| ! | GATTTTTATTGCTCCAAACA+AGG | + | chr8_3:43852689-43852708 | Msa1289630:CDS | 30.0% |
| AAGAACAAATTGCTTAGCTA+TGG | + | chr8_3:43852763-43852782 | Msa1289630:CDS | 30.0% | |
| !! | GAAAGTTACCAAGTTGATAT+TGG | + | chr8_3:43852817-43852836 | Msa1289630:CDS | 30.0% |
| ATTGTGATCCAATATCAACT+TGG | - | chr8_3:43852828-43852847 | None:intergenic | 30.0% | |
| AACAAATATCTTTGCTGAAG+TGG | - | chr8_3:43852863-43852882 | None:intergenic | 30.0% | |
| CCATTAGAGTTACAAATAGT+GGG | + | chr8_3:43852945-43852964 | Msa1289630:CDS | 30.0% | |
| CATTAGAGTTACAAATAGTG+GGG | + | chr8_3:43852946-43852965 | Msa1289630:CDS | 30.0% | |
| ATTAGAGTTACAAATAGTGG+GGG | + | chr8_3:43852947-43852966 | Msa1289630:CDS | 30.0% | |
| GATAAATTTCAACTTTCCAG+TGG | - | chr8_3:43853005-43853024 | None:intergenic | 30.0% | |
| AAGTTGAAATTTATCGAAGC+CGG | + | chr8_3:43853010-43853029 | Msa1289630:CDS | 30.0% | |
| TGATGATTTACACCAACAAA+GGG | - | chr8_3:43853241-43853260 | None:intergenic | 30.0% | |
| !! | TTGGTTGTTCAAAGCATTTT+TGG | + | chr8_3:43853321-43853340 | Msa1289630:CDS | 30.0% |
| !! | AAAGCATTTTTGGAGAGTAT+GGG | + | chr8_3:43853331-43853350 | Msa1289630:CDS | 30.0% |
| ! | TGAGCTGTAAAGATTGTTTT+TGG | - | chr8_3:43853367-43853386 | None:intergenic | 30.0% |
| CATGTCATCGTTTATGTTTA+TGG | + | chr8_3:43853431-43853450 | Msa1289630:CDS | 30.0% | |
| ATAAGCTTCAAGATCATCAA+TGG | + | chr8_3:43853593-43853612 | Msa1289630:CDS | 30.0% | |
| TTGAGAAGATGTTGAAAAAG+TGG | + | chr8_3:43853776-43853795 | Msa1289630:CDS | 30.0% | |
| !!! | CTTTTTAAGAAGTATTGGTC+AGG | - | chr8_3:43854156-43854175 | None:intergenic | 30.0% |
| AAAGATGGTCAAAAAATGCA+AGG | + | chr8_3:43854172-43854191 | Msa1289630:CDS | 30.0% | |
| ATCATCATTGATCACTGAAA+TGG | - | chr8_3:43854247-43854266 | None:intergenic | 30.0% | |
| GTGGAAATTACTTGATATTG+GGG | + | chr8_3:43854359-43854378 | Msa1289630:CDS | 30.0% | |
| GACAAATGTCAATGAAAATG+AGG | + | chr8_3:43854443-43854462 | Msa1289630:CDS | 30.0% | |
| GAGCCTAGAGATATTTATCT+TGG | + | chr8_3:43852539-43852558 | Msa1289630:CDS | 35.0% | |
| !! | CAGGTTTTAGTGTAAGAAAG+GGG | + | chr8_3:43852621-43852640 | Msa1289630:CDS | 35.0% |
| ! | TTTTAGTGTAAGAAAGGGGA+AGG | + | chr8_3:43852625-43852644 | Msa1289630:CDS | 35.0% |
| AGATTTAATGTGACCAAGGA+AGG | + | chr8_3:43852788-43852807 | Msa1289630:CDS | 35.0% | |
| CATTCACCAAAGACTTTATG+CGG | - | chr8_3:43852922-43852941 | None:intergenic | 35.0% | |
| GCCATTAGAGTTACAAATAG+TGG | + | chr8_3:43852944-43852963 | Msa1289630:CDS | 35.0% | |
| CCCACTATTTGTAACTCTAA+TGG | - | chr8_3:43852948-43852967 | None:intergenic | 35.0% | |
| ATGCATAATTATGTCTCCAC+TGG | + | chr8_3:43852986-43853005 | Msa1289630:CDS | 35.0% | |
| CTTGTGCTTGTTTACTTTGT+AGG | - | chr8_3:43853060-43853079 | None:intergenic | 35.0% | |
| CTGTACACTGTAATAGAACA+TGG | - | chr8_3:43853086-43853105 | None:intergenic | 35.0% | |
| ATGATTTACACCAACAAAGG+GGG | - | chr8_3:43853239-43853258 | None:intergenic | 35.0% | |
| GATGATTTACACCAACAAAG+GGG | - | chr8_3:43853240-43853259 | None:intergenic | 35.0% | |
| GTGATGATTTACACCAACAA+AGG | - | chr8_3:43853242-43853261 | None:intergenic | 35.0% | |
| TTGTTGGTGTAAATCATCAC+TGG | + | chr8_3:43853242-43853261 | Msa1289630:CDS | 35.0% | |
| !! | CAAAGCATTTTTGGAGAGTA+TGG | + | chr8_3:43853330-43853349 | Msa1289630:CDS | 35.0% |
| CATAAACGATGACATGCATT+TGG | - | chr8_3:43853427-43853446 | None:intergenic | 35.0% | |
| TGTATGAAATTCGCCATAAG+TGG | + | chr8_3:43853626-43853645 | Msa1289630:CDS | 35.0% | |
| TGTTTGTACTCTCAATCCTT+TGG | - | chr8_3:43853699-43853718 | None:intergenic | 35.0% | |
| ! | TGAGAGTACAAACAATGTGT+TGG | + | chr8_3:43853705-43853724 | Msa1289630:CDS | 35.0% |
| AATGAGTATCTTGAAGGAAC+AGG | + | chr8_3:43853925-43853944 | Msa1289630:CDS | 35.0% | |
| TTCTTTGTAGTCATGCTTTG+CGG | + | chr8_3:43854100-43854119 | Msa1289630:CDS | 35.0% | |
| ATCATTGATCACTGAAATGG+AGG | - | chr8_3:43854244-43854263 | None:intergenic | 35.0% | |
| AGCATTGCGATAAAGAATAC+CGG | - | chr8_3:43854274-43854293 | None:intergenic | 35.0% | |
| ! | GTCATTCTACCATCTAGTTT+CGG | + | chr8_3:43854302-43854321 | Msa1289630:CDS | 35.0% |
| GAGCCTAGAGATATTTATCT+TGG | + | chr8_3:43852539-43852558 | Msa1289630:CDS | 35.0% | |
| !! | CAGGTTTTAGTGTAAGAAAG+GGG | + | chr8_3:43852621-43852640 | Msa1289630:CDS | 35.0% |
| ! | TTTTAGTGTAAGAAAGGGGA+AGG | + | chr8_3:43852625-43852644 | Msa1289630:CDS | 35.0% |
| AGATTTAATGTGACCAAGGA+AGG | + | chr8_3:43852788-43852807 | Msa1289630:CDS | 35.0% | |
| CATTCACCAAAGACTTTATG+CGG | - | chr8_3:43852922-43852941 | None:intergenic | 35.0% | |
| GCCATTAGAGTTACAAATAG+TGG | + | chr8_3:43852944-43852963 | Msa1289630:CDS | 35.0% | |
| CCCACTATTTGTAACTCTAA+TGG | - | chr8_3:43852948-43852967 | None:intergenic | 35.0% | |
| ATGCATAATTATGTCTCCAC+TGG | + | chr8_3:43852986-43853005 | Msa1289630:CDS | 35.0% | |
| CTTGTGCTTGTTTACTTTGT+AGG | - | chr8_3:43853060-43853079 | None:intergenic | 35.0% | |
| CTGTACACTGTAATAGAACA+TGG | - | chr8_3:43853086-43853105 | None:intergenic | 35.0% | |
| ATGATTTACACCAACAAAGG+GGG | - | chr8_3:43853239-43853258 | None:intergenic | 35.0% | |
| GATGATTTACACCAACAAAG+GGG | - | chr8_3:43853240-43853259 | None:intergenic | 35.0% | |
| GTGATGATTTACACCAACAA+AGG | - | chr8_3:43853242-43853261 | None:intergenic | 35.0% | |
| TTGTTGGTGTAAATCATCAC+TGG | + | chr8_3:43853242-43853261 | Msa1289630:CDS | 35.0% | |
| !! | CAAAGCATTTTTGGAGAGTA+TGG | + | chr8_3:43853330-43853349 | Msa1289630:CDS | 35.0% |
| CATAAACGATGACATGCATT+TGG | - | chr8_3:43853427-43853446 | None:intergenic | 35.0% | |
| TGTATGAAATTCGCCATAAG+TGG | + | chr8_3:43853626-43853645 | Msa1289630:CDS | 35.0% | |
| TGTTTGTACTCTCAATCCTT+TGG | - | chr8_3:43853699-43853718 | None:intergenic | 35.0% | |
| ! | TGAGAGTACAAACAATGTGT+TGG | + | chr8_3:43853705-43853724 | Msa1289630:CDS | 35.0% |
| AATGAGTATCTTGAAGGAAC+AGG | + | chr8_3:43853925-43853944 | Msa1289630:CDS | 35.0% | |
| TTCTTTGTAGTCATGCTTTG+CGG | + | chr8_3:43854100-43854119 | Msa1289630:CDS | 35.0% | |
| ATCATTGATCACTGAAATGG+AGG | - | chr8_3:43854244-43854263 | None:intergenic | 35.0% | |
| AGCATTGCGATAAAGAATAC+CGG | - | chr8_3:43854274-43854293 | None:intergenic | 35.0% | |
| ! | GTCATTCTACCATCTAGTTT+CGG | + | chr8_3:43854302-43854321 | Msa1289630:CDS | 35.0% |
| CTAGGCTCATCAGTTTCAAT+TGG | - | chr8_3:43852527-43852546 | None:intergenic | 40.0% | |
| !!! | CTGTTTTGAAAGCATGCTCT+TGG | - | chr8_3:43852604-43852623 | None:intergenic | 40.0% |
| ! | CAAGAGCATGCTTTCAAAAC+AGG | + | chr8_3:43852602-43852621 | Msa1289630:CDS | 40.0% |
| TTATAAGCCACTTCACCATC+AGG | - | chr8_3:43852731-43852750 | None:intergenic | 40.0% | |
| GGTCAGATTTAATGTGACCA+AGG | + | chr8_3:43852784-43852803 | Msa1289630:CDS | 40.0% | |
| !! | TATGCGGTCTTCTTTGAGAT+TGG | - | chr8_3:43852906-43852925 | None:intergenic | 40.0% |
| AGAAGACCGCATAAAGTCTT+TGG | + | chr8_3:43852913-43852932 | Msa1289630:CDS | 40.0% | |
| CAGTAAAGATTGAGCATCTC+CGG | - | chr8_3:43853032-43853051 | None:intergenic | 40.0% | |
| CATTGGTCAAACGTGATTCA+TGG | - | chr8_3:43853114-43853133 | None:intergenic | 40.0% | |
| ! | CACGTTTGACCAATGTCTTT+TGG | + | chr8_3:43853119-43853138 | Msa1289630:CDS | 40.0% |
| !! | ACCAATGTCTTTTGGAGAGA+TGG | + | chr8_3:43853127-43853146 | Msa1289630:CDS | 40.0% |
| ACCATCTCTCCAAAAGACAT+TGG | - | chr8_3:43853131-43853150 | None:intergenic | 40.0% | |
| CACTGGCAAAATGTCATGTT+CGG | + | chr8_3:43853259-43853278 | Msa1289630:CDS | 40.0% | |
| TAAGAATGCTCCTTCACCTT+TGG | + | chr8_3:43853462-43853481 | Msa1289630:CDS | 40.0% | |
| AAGAATGCTCCTTCACCTTT+GGG | + | chr8_3:43853463-43853482 | Msa1289630:CDS | 40.0% | |
| TCAGAAATGAGAGAACCCAA+AGG | - | chr8_3:43853481-43853500 | None:intergenic | 40.0% | |
| TATAAGCAGTGCTCCACTTA+TGG | - | chr8_3:43853642-43853661 | None:intergenic | 40.0% | |
| AGCAAGAATGTATTCTCTGC+TGG | + | chr8_3:43853661-43853680 | Msa1289630:CDS | 40.0% | |
| TAACAAGAGGACGTGTACTT+TGG | - | chr8_3:43853837-43853856 | None:intergenic | 40.0% | |
| AACATTACGGCATGCATCTA+CGG | + | chr8_3:43853870-43853889 | Msa1289630:CDS | 40.0% | |
| TTGCCGCAAGTTTGATTCAA+TGG | + | chr8_3:43854074-43854093 | Msa1289630:CDS | 40.0% | |
| TGCCGCAAGTTTGATTCAAT+GGG | + | chr8_3:43854075-43854094 | Msa1289630:CDS | 40.0% | |
| TGCCCATTGAATCAAACTTG+CGG | - | chr8_3:43854080-43854099 | None:intergenic | 40.0% | |
| AGGCATGTGCTCATAAATCA+CGG | - | chr8_3:43854199-43854218 | None:intergenic | 40.0% | |
| TGATTTATGAGCACATGCCT+AGG | + | chr8_3:43854199-43854218 | Msa1289630:CDS | 40.0% | |
| GATTTATGAGCACATGCCTA+GGG | + | chr8_3:43854200-43854219 | Msa1289630:CDS | 40.0% | |
| ATTTATGAGCACATGCCTAG+GGG | + | chr8_3:43854201-43854220 | Msa1289630:CDS | 40.0% | |
| ! | GTGATCAATGATGATGATGC+CGG | + | chr8_3:43854252-43854271 | Msa1289630:CDS | 40.0% |
| CTTGACTTTCCGAAACTAGA+TGG | - | chr8_3:43854314-43854333 | None:intergenic | 40.0% | |
| CTAGGCTCATCAGTTTCAAT+TGG | - | chr8_3:43852527-43852546 | None:intergenic | 40.0% | |
| !!! | CTGTTTTGAAAGCATGCTCT+TGG | - | chr8_3:43852604-43852623 | None:intergenic | 40.0% |
| ! | CAAGAGCATGCTTTCAAAAC+AGG | + | chr8_3:43852602-43852621 | Msa1289630:CDS | 40.0% |
| TTATAAGCCACTTCACCATC+AGG | - | chr8_3:43852731-43852750 | None:intergenic | 40.0% | |
| GGTCAGATTTAATGTGACCA+AGG | + | chr8_3:43852784-43852803 | Msa1289630:CDS | 40.0% | |
| !! | TATGCGGTCTTCTTTGAGAT+TGG | - | chr8_3:43852906-43852925 | None:intergenic | 40.0% |
| AGAAGACCGCATAAAGTCTT+TGG | + | chr8_3:43852913-43852932 | Msa1289630:CDS | 40.0% | |
| CAGTAAAGATTGAGCATCTC+CGG | - | chr8_3:43853032-43853051 | None:intergenic | 40.0% | |
| CATTGGTCAAACGTGATTCA+TGG | - | chr8_3:43853114-43853133 | None:intergenic | 40.0% | |
| ! | CACGTTTGACCAATGTCTTT+TGG | + | chr8_3:43853119-43853138 | Msa1289630:CDS | 40.0% |
| !! | ACCAATGTCTTTTGGAGAGA+TGG | + | chr8_3:43853127-43853146 | Msa1289630:CDS | 40.0% |
| ACCATCTCTCCAAAAGACAT+TGG | - | chr8_3:43853131-43853150 | None:intergenic | 40.0% | |
| CACTGGCAAAATGTCATGTT+CGG | + | chr8_3:43853259-43853278 | Msa1289630:CDS | 40.0% | |
| TAAGAATGCTCCTTCACCTT+TGG | + | chr8_3:43853462-43853481 | Msa1289630:CDS | 40.0% | |
| AAGAATGCTCCTTCACCTTT+GGG | + | chr8_3:43853463-43853482 | Msa1289630:CDS | 40.0% | |
| TCAGAAATGAGAGAACCCAA+AGG | - | chr8_3:43853481-43853500 | None:intergenic | 40.0% | |
| TATAAGCAGTGCTCCACTTA+TGG | - | chr8_3:43853642-43853661 | None:intergenic | 40.0% | |
| AGCAAGAATGTATTCTCTGC+TGG | + | chr8_3:43853661-43853680 | Msa1289630:CDS | 40.0% | |
| TAACAAGAGGACGTGTACTT+TGG | - | chr8_3:43853837-43853856 | None:intergenic | 40.0% | |
| AACATTACGGCATGCATCTA+CGG | + | chr8_3:43853870-43853889 | Msa1289630:CDS | 40.0% | |
| TTGCCGCAAGTTTGATTCAA+TGG | + | chr8_3:43854074-43854093 | Msa1289630:CDS | 40.0% | |
| TGCCGCAAGTTTGATTCAAT+GGG | + | chr8_3:43854075-43854094 | Msa1289630:CDS | 40.0% | |
| TGCCCATTGAATCAAACTTG+CGG | - | chr8_3:43854080-43854099 | None:intergenic | 40.0% | |
| AGGCATGTGCTCATAAATCA+CGG | - | chr8_3:43854199-43854218 | None:intergenic | 40.0% | |
| TGATTTATGAGCACATGCCT+AGG | + | chr8_3:43854199-43854218 | Msa1289630:CDS | 40.0% | |
| GATTTATGAGCACATGCCTA+GGG | + | chr8_3:43854200-43854219 | Msa1289630:CDS | 40.0% | |
| ATTTATGAGCACATGCCTAG+GGG | + | chr8_3:43854201-43854220 | Msa1289630:CDS | 40.0% | |
| ! | GTGATCAATGATGATGATGC+CGG | + | chr8_3:43854252-43854271 | Msa1289630:CDS | 40.0% |
| CTTGACTTTCCGAAACTAGA+TGG | - | chr8_3:43854314-43854333 | None:intergenic | 40.0% | |
| ! | CAATGAACCTGATGGTGAAG+TGG | + | chr8_3:43852721-43852740 | Msa1289630:CDS | 45.0% |
| AACTTTCCACACTCCTTCCT+TGG | - | chr8_3:43852804-43852823 | None:intergenic | 45.0% | |
| !! | TTGATTTGTGCCCCCTTTGT+TGG | + | chr8_3:43853226-43853245 | Msa1289630:CDS | 45.0% |
| TACAGCTCATCATCCAGTCA+TGG | + | chr8_3:43853378-43853397 | Msa1289630:CDS | 45.0% | |
| !! | CCAATAGCTTTAGCCATGAC+TGG | - | chr8_3:43853394-43853413 | None:intergenic | 45.0% |
| CCAGTCATGGCTAAAGCTAT+TGG | + | chr8_3:43853391-43853410 | Msa1289630:CDS | 45.0% | |
| CATGGCTAAAGCTATTGGAG+AGG | + | chr8_3:43853396-43853415 | Msa1289630:CDS | 45.0% | |
| ATGAGAGAACCCAAAGGTGA+AGG | - | chr8_3:43853475-43853494 | None:intergenic | 45.0% | |
| TGTACTCTCAATCCTTTGGC+AGG | - | chr8_3:43853695-43853714 | None:intergenic | 45.0% | |
| ATTCCTCCTCAACCTCTATG+CGG | - | chr8_3:43853804-43853823 | None:intergenic | 45.0% | |
| GAGTATCTTGAAGGAACAGG+TGG | + | chr8_3:43853928-43853947 | Msa1289630:CDS | 45.0% | |
| TACTTGATATTGGGGCTGAG+AGG | + | chr8_3:43854367-43854386 | Msa1289630:CDS | 45.0% | |
| ACTTGATATTGGGGCTGAGA+GGG | + | chr8_3:43854368-43854387 | Msa1289630:CDS | 45.0% | |
| GGAAACATGCTTCAGACCAT+TGG | + | chr8_3:43854464-43854483 | Msa1289630:CDS | 45.0% | |
| ! | CAATGAACCTGATGGTGAAG+TGG | + | chr8_3:43852721-43852740 | Msa1289630:CDS | 45.0% |
| AACTTTCCACACTCCTTCCT+TGG | - | chr8_3:43852804-43852823 | None:intergenic | 45.0% | |
| !! | TTGATTTGTGCCCCCTTTGT+TGG | + | chr8_3:43853226-43853245 | Msa1289630:CDS | 45.0% |
| TACAGCTCATCATCCAGTCA+TGG | + | chr8_3:43853378-43853397 | Msa1289630:CDS | 45.0% | |
| !! | CCAATAGCTTTAGCCATGAC+TGG | - | chr8_3:43853394-43853413 | None:intergenic | 45.0% |
| CCAGTCATGGCTAAAGCTAT+TGG | + | chr8_3:43853391-43853410 | Msa1289630:CDS | 45.0% | |
| CATGGCTAAAGCTATTGGAG+AGG | + | chr8_3:43853396-43853415 | Msa1289630:CDS | 45.0% | |
| ATGAGAGAACCCAAAGGTGA+AGG | - | chr8_3:43853475-43853494 | None:intergenic | 45.0% | |
| TGTACTCTCAATCCTTTGGC+AGG | - | chr8_3:43853695-43853714 | None:intergenic | 45.0% | |
| ATTCCTCCTCAACCTCTATG+CGG | - | chr8_3:43853804-43853823 | None:intergenic | 45.0% | |
| GAGTATCTTGAAGGAACAGG+TGG | + | chr8_3:43853928-43853947 | Msa1289630:CDS | 45.0% | |
| TACTTGATATTGGGGCTGAG+AGG | + | chr8_3:43854367-43854386 | Msa1289630:CDS | 45.0% | |
| ACTTGATATTGGGGCTGAGA+GGG | + | chr8_3:43854368-43854387 | Msa1289630:CDS | 45.0% | |
| GGAAACATGCTTCAGACCAT+TGG | + | chr8_3:43854464-43854483 | Msa1289630:CDS | 45.0% | |
| ATGTGACCAAGGAAGGAGTG+TGG | + | chr8_3:43852795-43852814 | Msa1289630:CDS | 50.0% | |
| CTGGTATCAAGTCCTGCCAA+AGG | + | chr8_3:43853680-43853699 | Msa1289630:CDS | 50.0% | |
| GAATCTTCTCCCATACCCCT+AGG | - | chr8_3:43854219-43854238 | None:intergenic | 50.0% | |
| ATGTGACCAAGGAAGGAGTG+TGG | + | chr8_3:43852795-43852814 | Msa1289630:CDS | 50.0% | |
| CTGGTATCAAGTCCTGCCAA+AGG | + | chr8_3:43853680-43853699 | Msa1289630:CDS | 50.0% | |
| GAATCTTCTCCCATACCCCT+AGG | - | chr8_3:43854219-43854238 | None:intergenic | 50.0% | |
| GAAAAAGTGGCGCCGCATAG+AGG | + | chr8_3:43853789-43853808 | Msa1289630:CDS | 55.0% | |
| TGAGCACATGCCTAGGGGTA+TGG | + | chr8_3:43854206-43854225 | Msa1289630:CDS | 55.0% | |
| ! | GAGCACATGCCTAGGGGTAT+GGG | + | chr8_3:43854207-43854226 | Msa1289630:CDS | 55.0% |
| ! | GAGAGGGTGCGAAAAGGTGT+TGG | + | chr8_3:43854384-43854403 | Msa1289630:CDS | 55.0% |
| !! | GGTGCGAAAAGGTGTTGGCA+AGG | + | chr8_3:43854389-43854408 | Msa1289630:CDS | 55.0% |
| GAAAAAGTGGCGCCGCATAG+AGG | + | chr8_3:43853789-43853808 | Msa1289630:CDS | 55.0% | |
| TGAGCACATGCCTAGGGGTA+TGG | + | chr8_3:43854206-43854225 | Msa1289630:CDS | 55.0% | |
| ! | GAGCACATGCCTAGGGGTAT+GGG | + | chr8_3:43854207-43854226 | Msa1289630:CDS | 55.0% |
| ! | GAGAGGGTGCGAAAAGGTGT+TGG | + | chr8_3:43854384-43854403 | Msa1289630:CDS | 55.0% |
| !! | GGTGCGAAAAGGTGTTGGCA+AGG | + | chr8_3:43854389-43854408 | Msa1289630:CDS | 55.0% |
| GTGGCGCCGCATAGAGGTTG+AGG | + | chr8_3:43853795-43853814 | Msa1289630:CDS | 65.0% | |
| GCGCCGCATAGAGGTTGAGG+AGG | + | chr8_3:43853798-43853817 | Msa1289630:CDS | 65.0% | |
| ! | GGGGCTGAGAGGGTGCGAAA+AGG | + | chr8_3:43854378-43854397 | Msa1289630:CDS | 65.0% |
| GTGGCGCCGCATAGAGGTTG+AGG | + | chr8_3:43853795-43853814 | Msa1289630:CDS | 65.0% | |
| GCGCCGCATAGAGGTTGAGG+AGG | + | chr8_3:43853798-43853817 | Msa1289630:CDS | 65.0% | |
| ! | GGGGCTGAGAGGGTGCGAAA+AGG | + | chr8_3:43854378-43854397 | Msa1289630:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 43852503 | 43854491 | 43852503 | ID=Msa1289630;Name=Msa1289630 |
| chr8_3 | mRNA | 43852503 | 43854491 | 43852503 | ID=Msa1289630-mRNA-1;Parent=Msa1289630;Name=Msa1289630-mRNA-1;_AED=0.12;_eAED=0.14;_QI=0|-1|0|1|-1|1|1|0|662 |
| chr8_3 | exon | 43852503 | 43854491 | 43852503 | ID=Msa1289630-mRNA-1:exon:11960;Parent=Msa1289630-mRNA-1 |
| chr8_3 | CDS | 43852503 | 43854491 | 43852503 | ID=Msa1289630-mRNA-1:cds;Parent=Msa1289630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
