Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1289790 | RHN41244.1 | 88.591 | 149 | 13 | 3 | 1 | 146 | 31 | 178 | 3.79e-86 | 262 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1289790 | sp|O48686|SNL3_ARATH | 52.941 | 85 | 40 | 0 | 6 | 90 | 6 | 90 | 2.82e-23 | 98.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1289790 | A0A396GNU9 | 88.591 | 149 | 13 | 3 | 1 | 146 | 31 | 178 | 1.81e-86 | 262 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1289790 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1289790 | MtrunA17_Chr8g0364021 | 88.591 | 149 | 13 | 3 | 1 | 146 | 31 | 178 | 3.48e-90 | 262 |
| Msa1289790 | MtrunA17_Chr5g0415031 | 55.172 | 87 | 39 | 0 | 4 | 90 | 33 | 119 | 5.54e-28 | 108 |
| Msa1289790 | MtrunA17_Chr8g0364231 | 55.172 | 87 | 39 | 0 | 6 | 92 | 34 | 120 | 6.05e-27 | 105 |
| Msa1289790 | MtrunA17_Chr6g0452001 | 49.515 | 103 | 48 | 2 | 2 | 103 | 54 | 153 | 3.29e-23 | 94.7 |
| Msa1289790 | MtrunA17_Chr6g0452021 | 47.917 | 96 | 49 | 1 | 8 | 103 | 37 | 131 | 7.24e-22 | 90.5 |
| Msa1289790 | MtrunA17_Chr1g0206781 | 47.191 | 89 | 46 | 1 | 8 | 96 | 5 | 92 | 2.79e-20 | 80.5 |
| Msa1289790 | MtrunA17_Chr1g0206771 | 51.389 | 72 | 35 | 0 | 7 | 78 | 9 | 80 | 1.46e-18 | 77.8 |
| Msa1289790 | MtrunA17_Chr1g0206771 | 45.000 | 80 | 44 | 0 | 13 | 92 | 94 | 173 | 4.87e-13 | 63.2 |
| Msa1289790 | MtrunA17_Chr3g0077891 | 49.383 | 81 | 40 | 1 | 5 | 84 | 90 | 170 | 1.42e-17 | 75.1 |
| Msa1289790 | MtrunA17_Chr3g0077891 | 50.649 | 77 | 37 | 1 | 8 | 83 | 2 | 78 | 4.77e-16 | 71.2 |
| Msa1289790 | MtrunA17_Chr3g0077881 | 43.119 | 109 | 55 | 3 | 8 | 109 | 2 | 110 | 3.18e-17 | 74.3 |
| Msa1289790 | MtrunA17_Chr3g0077881 | 42.391 | 92 | 45 | 2 | 5 | 95 | 90 | 174 | 9.33e-13 | 62.4 |
| Msa1289790 | MtrunA17_Chr3g0077941 | 50.649 | 77 | 37 | 1 | 8 | 83 | 2 | 78 | 3.23e-16 | 71.6 |
| Msa1289790 | MtrunA17_Chr3g0077941 | 48.684 | 76 | 38 | 1 | 7 | 81 | 91 | 166 | 2.73e-15 | 69.3 |
| Msa1289790 | MtrunA17_Chr3g0077911 | 50.000 | 74 | 36 | 1 | 7 | 79 | 83 | 156 | 3.52e-16 | 71.2 |
| Msa1289790 | MtrunA17_Chr3g0077911 | 41.379 | 87 | 46 | 2 | 8 | 92 | 2 | 85 | 6.20e-12 | 60.1 |
| Msa1289790 | MtrunA17_Chr1g0205811 | 41.573 | 89 | 52 | 0 | 1 | 89 | 1 | 89 | 7.04e-16 | 69.3 |
| Msa1289790 | MtrunA17_Chr1g0205821 | 38.636 | 88 | 54 | 0 | 5 | 92 | 90 | 177 | 1.15e-15 | 70.1 |
| Msa1289790 | MtrunA17_Chr1g0205821 | 38.372 | 86 | 53 | 0 | 13 | 98 | 12 | 97 | 2.40e-12 | 61.2 |
| Msa1289790 | MtrunA17_Chr3g0077861 | 48.649 | 74 | 37 | 1 | 7 | 79 | 83 | 156 | 1.58e-15 | 69.7 |
| Msa1289790 | MtrunA17_Chr3g0077861 | 41.573 | 89 | 48 | 2 | 8 | 95 | 2 | 87 | 2.61e-11 | 58.5 |
| Msa1289790 | MtrunA17_Chr4g0075861 | 43.373 | 83 | 45 | 1 | 9 | 89 | 84 | 166 | 5.72e-14 | 67.8 |
| Msa1289790 | MtrunA17_Chr4g0075861 | 45.455 | 77 | 40 | 1 | 7 | 83 | 167 | 241 | 2.80e-12 | 63.2 |
| Msa1289790 | MtrunA17_Chr4g0075861 | 45.000 | 80 | 41 | 1 | 13 | 92 | 11 | 87 | 1.46e-11 | 60.8 |
| Msa1289790 | MtrunA17_Chr1g0205861 | 36.364 | 110 | 67 | 2 | 6 | 113 | 8 | 116 | 6.48e-14 | 64.3 |
| Msa1289790 | MtrunA17_Chr7g0218911 | 39.394 | 66 | 40 | 0 | 18 | 83 | 2 | 67 | 4.65e-13 | 62.0 |
| Msa1289790 | MtrunA17_Chr4g0075971 | 40.964 | 83 | 47 | 1 | 9 | 89 | 84 | 166 | 3.14e-12 | 63.2 |
| Msa1289790 | MtrunA17_Chr4g0075971 | 45.000 | 80 | 41 | 1 | 13 | 92 | 11 | 87 | 1.90e-11 | 60.8 |
| Msa1289790 | MtrunA17_Chr4g0075971 | 43.750 | 80 | 43 | 1 | 7 | 86 | 167 | 244 | 2.63e-11 | 60.5 |
| Msa1289790 | MtrunA17_Chr2g0328701 | 38.947 | 95 | 51 | 2 | 13 | 107 | 28 | 115 | 9.38e-12 | 58.9 |
| Msa1289790 | MtrunA17_Chr1g0205801 | 38.158 | 76 | 47 | 0 | 14 | 89 | 12 | 87 | 3.21e-11 | 57.0 |
| Msa1289790 | MtrunA17_Chr7g0218891 | 39.744 | 78 | 45 | 1 | 14 | 89 | 185 | 262 | 9.89e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1289790 | AT1G24190.3 | 52.941 | 85 | 40 | 0 | 6 | 90 | 6 | 90 | 2.68e-24 | 98.2 |
| Msa1289790 | AT1G24190.2 | 52.941 | 85 | 40 | 0 | 6 | 90 | 6 | 90 | 2.87e-24 | 98.2 |
| Msa1289790 | AT1G24190.1 | 52.941 | 85 | 40 | 0 | 6 | 90 | 6 | 90 | 2.87e-24 | 98.2 |
| Msa1289790 | AT3G01320.1 | 52.439 | 82 | 39 | 0 | 7 | 88 | 50 | 131 | 1.88e-23 | 95.9 |
| Msa1289790 | AT3G01320.2 | 52.439 | 82 | 39 | 0 | 7 | 88 | 50 | 131 | 1.90e-23 | 95.9 |
| Msa1289790 | AT1G70060.2 | 48.889 | 90 | 46 | 0 | 1 | 90 | 1 | 90 | 1.91e-23 | 95.9 |
| Msa1289790 | AT1G70060.1 | 48.889 | 90 | 46 | 0 | 1 | 90 | 1 | 90 | 1.91e-23 | 95.9 |
| Msa1289790 | AT1G59890.3 | 50.000 | 82 | 41 | 0 | 14 | 95 | 45 | 126 | 1.65e-22 | 93.2 |
| Msa1289790 | AT1G59890.2 | 50.000 | 82 | 41 | 0 | 14 | 95 | 45 | 126 | 1.65e-22 | 93.2 |
| Msa1289790 | AT1G59890.1 | 50.000 | 82 | 41 | 0 | 14 | 95 | 45 | 126 | 1.68e-22 | 93.2 |
| Msa1289790 | AT1G59890.4 | 50.000 | 82 | 41 | 0 | 14 | 95 | 45 | 126 | 1.75e-22 | 93.2 |
| Msa1289790 | AT5G15025.1 | 51.899 | 79 | 38 | 0 | 10 | 88 | 43 | 121 | 9.33e-22 | 84.7 |
| Msa1289790 | AT5G15020.1 | 45.833 | 96 | 51 | 1 | 8 | 103 | 46 | 140 | 2.13e-21 | 90.1 |
| Msa1289790 | AT5G15020.2 | 45.833 | 96 | 51 | 1 | 8 | 103 | 46 | 140 | 2.25e-21 | 89.7 |
| Msa1289790 | AT1G10450.3 | 46.341 | 82 | 44 | 0 | 14 | 95 | 84 | 165 | 5.60e-19 | 82.8 |
| Msa1289790 | AT1G10450.2 | 46.341 | 82 | 44 | 0 | 14 | 95 | 33 | 114 | 6.33e-19 | 82.8 |
| Msa1289790 | AT1G10450.1 | 46.341 | 82 | 44 | 0 | 14 | 95 | 33 | 114 | 6.33e-19 | 82.8 |
| Msa1289790 | AT1G70030.3 | 43.529 | 85 | 48 | 0 | 3 | 87 | 11 | 95 | 7.32e-19 | 77.4 |
| Msa1289790 | AT1G70030.2 | 43.529 | 85 | 48 | 0 | 3 | 87 | 11 | 95 | 1.34e-18 | 77.4 |
| Msa1289790 | AT1G70030.1 | 43.902 | 82 | 46 | 0 | 6 | 87 | 3 | 84 | 4.34e-18 | 76.6 |
| Msa1289790 | AT5G15040.1 | 45.333 | 75 | 41 | 0 | 17 | 91 | 6 | 80 | 1.63e-17 | 72.8 |
| Msa1289790 | AT5G15040.3 | 45.333 | 75 | 41 | 0 | 17 | 91 | 6 | 80 | 1.63e-17 | 72.8 |
| Msa1289790 | AT5G15040.2 | 45.333 | 75 | 41 | 0 | 17 | 91 | 6 | 80 | 1.63e-17 | 72.8 |
| Msa1289790 | AT1G27220.1 | 42.553 | 94 | 47 | 2 | 5 | 91 | 4 | 97 | 3.10e-17 | 74.7 |
| Msa1289790 | AT4G12020.6 | 44.944 | 89 | 48 | 1 | 10 | 98 | 304 | 391 | 5.56e-17 | 77.4 |
| Msa1289790 | AT4G12020.8 | 44.944 | 89 | 48 | 1 | 10 | 98 | 304 | 391 | 5.56e-17 | 77.4 |
| Msa1289790 | AT4G12020.4 | 44.944 | 89 | 48 | 1 | 10 | 98 | 304 | 391 | 5.57e-17 | 77.4 |
| Msa1289790 | AT4G12020.7 | 44.944 | 89 | 48 | 1 | 10 | 98 | 304 | 391 | 5.61e-17 | 77.4 |
| Msa1289790 | AT4G12020.2 | 44.944 | 89 | 48 | 1 | 10 | 98 | 304 | 391 | 5.68e-17 | 77.4 |
| Msa1289790 | AT4G12020.5 | 44.944 | 89 | 48 | 1 | 10 | 98 | 237 | 324 | 5.73e-17 | 77.4 |
| Msa1289790 | AT4G12020.3 | 44.944 | 89 | 48 | 1 | 10 | 98 | 304 | 391 | 5.74e-17 | 77.4 |
| Msa1289790 | AT4G12020.1 | 44.944 | 89 | 48 | 1 | 10 | 98 | 304 | 391 | 5.84e-17 | 77.4 |
| Msa1289790 | AT4G12020.9 | 44.944 | 89 | 48 | 1 | 10 | 98 | 304 | 391 | 5.84e-17 | 77.4 |
| Msa1289790 | AT4G12020.10 | 44.944 | 89 | 48 | 1 | 10 | 98 | 304 | 391 | 6.14e-17 | 77.0 |
| Msa1289790 | AT4G12020.11 | 44.944 | 89 | 48 | 1 | 10 | 98 | 304 | 391 | 6.16e-17 | 77.0 |
| Msa1289790 | AT1G24200.1 | 44.944 | 89 | 49 | 0 | 1 | 89 | 1 | 89 | 8.09e-17 | 73.9 |
| Msa1289790 | AT1G27250.1 | 42.466 | 73 | 42 | 0 | 9 | 81 | 16 | 88 | 1.20e-15 | 69.7 |
| Msa1289790 | AT1G24210.1 | 39.744 | 78 | 42 | 1 | 10 | 87 | 10 | 82 | 7.45e-14 | 65.5 |
| Msa1289790 | AT1G27260.1 | 41.429 | 70 | 41 | 0 | 15 | 84 | 4 | 73 | 7.35e-13 | 63.9 |
| Msa1289790 | AT5G35610.1 | 38.144 | 97 | 59 | 1 | 6 | 102 | 2 | 97 | 2.36e-12 | 61.2 |
| Msa1289790 | AT1G23810.1 | 42.188 | 64 | 37 | 0 | 11 | 74 | 106 | 169 | 2.13e-11 | 60.1 |
| Msa1289790 | AT1G24250.1 | 42.188 | 64 | 37 | 0 | 11 | 74 | 117 | 180 | 5.61e-11 | 59.3 |
Find 36 sgRNAs with CRISPR-Local
Find 49 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTCATCTTCTTCTGAAAT+TGG | 0.145375 | 8_3:+44238918 | None:intergenic |
| GTTCATCTTCTTCTGAAATT+GGG | 0.296314 | 8_3:+44238919 | None:intergenic |
| TGATGCCTTTGCATATCTTA+AGG | 0.401654 | 8_3:-44239401 | Msa1289790:CDS |
| ACAAACTCATTAGCGTGTTC+AGG | 0.404504 | 8_3:+44238759 | None:intergenic |
| TGAAGGATTACAAAGATAAC+AGG | 0.410405 | 8_3:-44239321 | Msa1289790:intron |
| AGGACATAATGATCTGATTA+CGG | 0.410966 | 8_3:-44238976 | Msa1289790:CDS |
| CCAAATGGTTCATTCCTTGA+TGG | 0.420352 | 8_3:+44238786 | None:intergenic |
| GGATGTCTTCAGAGAACAAA+TGG | 0.428268 | 8_3:-44239371 | Msa1289790:CDS |
| CACATTCATCAAGATTCCTA+AGG | 0.446532 | 8_3:+44238892 | None:intergenic |
| GGACATAATGATCTGATTAC+GGG | 0.453739 | 8_3:-44238975 | Msa1289790:CDS |
| AACACGCTAATGAGTTTGTC+AGG | 0.476933 | 8_3:-44238755 | Msa1289790:CDS |
| CCATCAAGGAATGAACCATT+TGG | 0.482429 | 8_3:-44238786 | Msa1289790:CDS |
| TGAGTTTGTCAGGAAAGTTA+AGG | 0.495626 | 8_3:-44238745 | Msa1289790:CDS |
| GCGTGTTCAGGTCCACCAAA+TGG | 0.497913 | 8_3:+44238771 | None:intergenic |
| AAGAAGATGAACAACCCCTT+AGG | 0.498111 | 8_3:-44238908 | Msa1289790:CDS |
| ATATGCAAAGGCATCATCTT+CGG | 0.504699 | 8_3:+44239408 | None:intergenic |
| CAATCTCCTCAGATGATGCT+TGG | 0.528479 | 8_3:-44238828 | Msa1289790:CDS |
| ACATTCATCAAGATTCCTAA+GGG | 0.529673 | 8_3:+44238893 | None:intergenic |
| TCTCCTCAGATGATGCTTGG+TGG | 0.532260 | 8_3:-44238825 | Msa1289790:CDS |
| TGCATATCTTAAGGCAGTCA+AGG | 0.543106 | 8_3:-44239392 | Msa1289790:CDS |
| TAATTACCATGATGTTGTAA+CGG | 0.566432 | 8_3:-44239018 | Msa1289790:CDS |
| ATGTGAAATGACAATTCCAT+TGG | 0.573688 | 8_3:-44238874 | Msa1289790:CDS |
| TCAAGGAATGAACCATTTGG+TGG | 0.574249 | 8_3:-44238783 | Msa1289790:CDS |
| TGATGTTGTAACGGAGGTGA+AGG | 0.575535 | 8_3:-44239009 | Msa1289790:CDS |
| AGCATATCACAACTCCATCA+AGG | 0.575744 | 8_3:-44238800 | Msa1289790:CDS |
| TGAGGAGATTGTGCATTGAG+AGG | 0.583914 | 8_3:+44238840 | None:intergenic |
| TCACCTCCGTTACAACATCA+TGG | 0.592553 | 8_3:+44239012 | None:intergenic |
| TTCAACATCTTTGCACCAAG+TGG | 0.595995 | 8_3:-44238951 | Msa1289790:CDS |
| GAGGTGAAGGAGTTGTTCAA+AGG | 0.606819 | 8_3:-44238996 | Msa1289790:CDS |
| ACAAAGATGAGTACGAGTCA+AGG | 0.614659 | 8_3:-44239445 | None:intergenic |
| GACTGCCTTAAGATATGCAA+AGG | 0.619589 | 8_3:+44239396 | None:intergenic |
| ATTGGGATTTGATAACCACT+TGG | 0.631213 | 8_3:+44238936 | None:intergenic |
| TTACCATGATGTTGTAACGG+AGG | 0.669596 | 8_3:-44239015 | Msa1289790:CDS |
| TCTCCACCAAGCATCATCTG+AGG | 0.679479 | 8_3:+44238822 | None:intergenic |
| CATTCATCAAGATTCCTAAG+GGG | 0.686349 | 8_3:+44238894 | None:intergenic |
| AAGATGAGTACGAGTCAAGG+TGG | 0.711763 | 8_3:-44239442 | Msa1289790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTACTTTTTGAAAATAATGA+AGG | - | chr8_3:44238826-44238845 | Msa1289790:CDS | 15.0% |
| !! | TGGTAAACTATAAATAATAT+AGG | + | chr8_3:44239056-44239075 | None:intergenic | 15.0% |
| !! | TAATTAGAGACGAAAAAAAT+TGG | + | chr8_3:44238997-44239016 | None:intergenic | 20.0% |
| !! | AATAGAAAAATGTAAATTGC+CGG | + | chr8_3:44239023-44239042 | None:intergenic | 20.0% |
| ! | TATTTATAGTTTACCATGAG+AGG | - | chr8_3:44239060-44239079 | Msa1289790:intron | 25.0% |
| ! | TCGCAAATAAAATTAAGATC+CGG | + | chr8_3:44239086-44239105 | None:intergenic | 25.0% |
| ! | TAATTACCATGATGTTGTAA+CGG | - | chr8_3:44239146-44239165 | Msa1289790:intron | 25.0% |
| TGAAGGATTACAAAGATAAC+AGG | - | chr8_3:44238843-44238862 | Msa1289790:CDS | 30.0% | |
| GATTACAAAGATAACAGGTT+AGG | - | chr8_3:44238848-44238867 | Msa1289790:CDS | 30.0% | |
| CAATAGTGATTGAAAGAATG+TGG | + | chr8_3:44238891-44238910 | None:intergenic | 30.0% | |
| !!! | CATTTTTTCGTCCGAAATAT+TGG | + | chr8_3:44238951-44238970 | None:intergenic | 30.0% |
| ! | TTTTCGTCTCTAATTAATGC+CGG | - | chr8_3:44239001-44239020 | Msa1289790:CDS | 30.0% |
| AGGACATAATGATCTGATTA+CGG | - | chr8_3:44239188-44239207 | Msa1289790:intron | 30.0% | |
| !! | GTTCATCTTCTTCTGAAATT+GGG | + | chr8_3:44239248-44239267 | None:intergenic | 30.0% |
| !! | TGTTCATCTTCTTCTGAAAT+TGG | + | chr8_3:44239249-44239268 | None:intergenic | 30.0% |
| ACATTCATCAAGATTCCTAA+GGG | + | chr8_3:44239274-44239293 | None:intergenic | 30.0% | |
| ATGTGAAATGACAATTCCAT+TGG | - | chr8_3:44239290-44239309 | Msa1289790:intron | 30.0% | |
| !!! | AGAGGTTTTAATTCTTCCAA+TGG | + | chr8_3:44239309-44239328 | None:intergenic | 30.0% |
| !! | ATATGCAAAGGCATCATCTT+CGG | + | chr8_3:44238759-44238778 | None:intergenic | 35.0% |
| TGATGCCTTTGCATATCTTA+AGG | - | chr8_3:44238763-44238782 | Msa1289790:CDS | 35.0% | |
| CCAATCACTGACCAATATTT+CGG | - | chr8_3:44238937-44238956 | Msa1289790:CDS | 35.0% | |
| GGACATAATGATCTGATTAC+GGG | - | chr8_3:44239189-44239208 | Msa1289790:intron | 35.0% | |
| ! | ATTGGGATTTGATAACCACT+TGG | + | chr8_3:44239231-44239250 | None:intergenic | 35.0% |
| CATTCATCAAGATTCCTAAG+GGG | + | chr8_3:44239273-44239292 | None:intergenic | 35.0% | |
| CACATTCATCAAGATTCCTA+AGG | + | chr8_3:44239275-44239294 | None:intergenic | 35.0% | |
| TGAGTTTGTCAGGAAAGTTA+AGG | - | chr8_3:44239419-44239438 | Msa1289790:CDS | 35.0% | |
| GACTGCCTTAAGATATGCAA+AGG | + | chr8_3:44238771-44238790 | None:intergenic | 40.0% | |
| TGCATATCTTAAGGCAGTCA+AGG | - | chr8_3:44238772-44238791 | Msa1289790:CDS | 40.0% | |
| GGATGTCTTCAGAGAACAAA+TGG | - | chr8_3:44238793-44238812 | Msa1289790:CDS | 40.0% | |
| CCGAAATATTGGTCAGTGAT+TGG | + | chr8_3:44238940-44238959 | None:intergenic | 40.0% | |
| TATAGTTTACCATGAGAGGC+CGG | - | chr8_3:44239064-44239083 | Msa1289790:intron | 40.0% | |
| TTACCATGATGTTGTAACGG+AGG | - | chr8_3:44239149-44239168 | Msa1289790:intron | 40.0% | |
| TTCAACATCTTTGCACCAAG+TGG | - | chr8_3:44239213-44239232 | Msa1289790:intron | 40.0% | |
| AAGAAGATGAACAACCCCTT+AGG | - | chr8_3:44239256-44239275 | Msa1289790:intron | 40.0% | |
| AGCATATCACAACTCCATCA+AGG | - | chr8_3:44239364-44239383 | Msa1289790:CDS | 40.0% | |
| CCAAATGGTTCATTCCTTGA+TGG | + | chr8_3:44239381-44239400 | None:intergenic | 40.0% | |
| CCATCAAGGAATGAACCATT+TGG | - | chr8_3:44239378-44239397 | Msa1289790:CDS | 40.0% | |
| TCAAGGAATGAACCATTTGG+TGG | - | chr8_3:44239381-44239400 | Msa1289790:CDS | 40.0% | |
| ACAAACTCATTAGCGTGTTC+AGG | + | chr8_3:44239408-44239427 | None:intergenic | 40.0% | |
| AACACGCTAATGAGTTTGTC+AGG | - | chr8_3:44239409-44239428 | Msa1289790:CDS | 40.0% | |
| AATTAAGATCCGGCCTCTCA+TGG | + | chr8_3:44239076-44239095 | None:intergenic | 45.0% | |
| TCACCTCCGTTACAACATCA+TGG | + | chr8_3:44239155-44239174 | None:intergenic | 45.0% | |
| ! | TGATGTTGTAACGGAGGTGA+AGG | - | chr8_3:44239155-44239174 | Msa1289790:intron | 45.0% |
| GAGGTGAAGGAGTTGTTCAA+AGG | - | chr8_3:44239168-44239187 | Msa1289790:intron | 45.0% | |
| TGAGGAGATTGTGCATTGAG+AGG | + | chr8_3:44239327-44239346 | None:intergenic | 45.0% | |
| CAATCTCCTCAGATGATGCT+TGG | - | chr8_3:44239336-44239355 | Msa1289790:CDS | 45.0% | |
| TCTCCTCAGATGATGCTTGG+TGG | - | chr8_3:44239339-44239358 | Msa1289790:CDS | 50.0% | |
| TCTCCACCAAGCATCATCTG+AGG | + | chr8_3:44239345-44239364 | None:intergenic | 50.0% | |
| GCGTGTTCAGGTCCACCAAA+TGG | + | chr8_3:44239396-44239415 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 44238725 | 44239461 | 44238725 | ID=Msa1289790;Name=Msa1289790 |
| chr8_3 | mRNA | 44238725 | 44239461 | 44238725 | ID=Msa1289790-mRNA-1;Parent=Msa1289790;Name=Msa1289790-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|153 |
| chr8_3 | exon | 44239322 | 44239461 | 44239322 | ID=Msa1289790-mRNA-1:exon:12117;Parent=Msa1289790-mRNA-1 |
| chr8_3 | exon | 44238725 | 44239043 | 44238725 | ID=Msa1289790-mRNA-1:exon:12116;Parent=Msa1289790-mRNA-1 |
| chr8_3 | CDS | 44239322 | 44239461 | 44239322 | ID=Msa1289790-mRNA-1:cds;Parent=Msa1289790-mRNA-1 |
| chr8_3 | CDS | 44238725 | 44239043 | 44238725 | ID=Msa1289790-mRNA-1:cds;Parent=Msa1289790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
