AlfalfaGEDB | Msa1291710

M. sativa cultivar zhongmu-4 / Msa1291710

KEGG: K14498
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1291710	BAX08112.1	58.678	121	44	3	8	122	48	168	4.73e-39	145

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1291710	sp\|P43291\|SRK2A_ARATH	58.678	121	16	2	6	122	27	117	6.95e-37	131

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1291710	A0A1V1FM20	58.678	121	44	3	8	122	48	168	2.26e-39	145

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1291710	MtrunA17_Chr8g0385281	59.200	125	17	2	2	122	24	118	1.68e-39	135
Msa1291710	MtrunA17_Chr3g0131061	56.800	125	20	2	2	122	23	117	5.68e-38	131
Msa1291710	MtrunA17_Chr2g0277501	57.025	121	18	2	6	122	27	117	9.65e-37	127
Msa1291710	MtrunA17_Chr4g0055451	57.143	119	17	2	8	122	30	118	3.80e-36	125
Msa1291710	MtrunA17_Chr4g0045371	56.303	119	18	2	8	122	48	136	4.28e-36	126
Msa1291710	MtrunA17_Chr1g0162301	56.303	119	18	2	8	122	49	137	5.60e-36	126
Msa1291710	MtrunA17_Chr8g0374571	54.545	121	21	2	6	122	46	136	1.23e-34	122
Msa1291710	MtrunA17_Chr8g0381821	56.140	114	19	2	9	122	35	117	3.02e-34	121
Msa1291710	MtrunA17_Chr5g0426521	52.459	122	24	2	6	123	27	118	3.90e-34	120
Msa1291710	MtrunA17_Chr5g0402661	51.240	121	25	2	6	122	41	131	2.98e-33	119

Showing 1 to 10 of 15 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1291710	AT1G10940.1	58.678	121	16	2	6	122	27	117	7.07e-38	131
Msa1291710	AT1G10940.2	59.504	121	23	3	6	122	27	125	1.47e-37	130
Msa1291710	AT1G60940.1	57.851	121	17	2	6	122	27	117	2.91e-37	129
Msa1291710	AT1G60940.2	57.851	121	17	2	6	122	27	117	2.91e-37	129
Msa1291710	AT3G50500.1	56.198	121	19	2	6	122	46	136	1.15e-36	128
Msa1291710	AT3G50500.2	56.198	121	19	2	6	122	46	136	1.17e-36	128
Msa1291710	AT4G33950.1	56.303	119	18	2	8	122	46	134	6.73e-36	126
Msa1291710	AT4G33950.2	56.303	119	18	2	8	122	46	134	6.78e-36	125
Msa1291710	AT5G66880.1	52.893	121	23	2	6	122	45	135	4.77e-35	124
Msa1291710	AT5G66880.2	52.893	121	23	2	6	122	45	135	4.77e-35	124

Showing 1 to 10 of 22 entries

Previous1 2 3Next

Find 31 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACACAATATGCAGCTGGAG+GGG	0.600335	8_3:-47180238	Msa1291710:CDS
AAGCTTCACCAGAGGCTTGA+TGG	0.417893	8_3:+47180854	None:intergenic
AGAAAGCCAAGCTTCACCAG+AGG	0.702351	8_3:+47180846	None:intergenic
AGAGGACCTGTAATGCTGGT+CGG	0.592162	8_3:-47180206	Msa1291710:CDS
AGGCTTGATGGTGCAATTCA+TGG	0.410361	8_3:+47180866	None:intergenic
ATAGTAACACAATATGCAGC+TGG	0.566363	8_3:-47180243	Msa1291710:CDS
ATCAAGCCTCTGGTGAAGCT+TGG	0.488088	8_3:-47180852	Msa1291710:CDS
ATGAGGTTAATAACTTGACA+TGG	0.624734	8_3:-47180173	Msa1291710:CDS
CCCGAATATAATTCGTTTCA+AGG	0.408070	8_3:-47180398	Msa1291710:CDS
CCTTGAAACGAATTATATTC+GGG	0.472706	8_3:+47180398	None:intergenic

Showing 1 to 10 of 31 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CCTTGAAACGAATTATATTC+GGG	+	chr8_3:47180510-47180529	None:intergenic	30.0%
GAATATAATTCGTTTCAAGG+AGG	-	chr8_3:47180510-47180529	Msa1291710:intron	30.0%
ATGAGGTTAATAACTTGACA+TGG	-	chr8_3:47180732-47180751	Msa1291710:intron	30.0%
CCTTGAAACGAATTATATTC+GGG	+	chr8_3:47180510-47180529	None:intergenic	30.0%
GAATATAATTCGTTTCAAGG+AGG	-	chr8_3:47180510-47180529	Msa1291710:intron	30.0%
ATGAGGTTAATAACTTGACA+TGG	-	chr8_3:47180732-47180751	Msa1291710:intron	30.0%
TTTGCACAAATGCATTGAAG+CGG	+	chr8_3:47180261-47180280	None:intergenic	35.0%
TTTCCAGATTGATGAGAATG+TGG	-	chr8_3:47180450-47180469	Msa1291710:CDS	35.0%
TTATCAACCACAGATCTCTT+CGG	-	chr8_3:47180482-47180501	Msa1291710:intron	35.0%
CCCGAATATAATTCGTTTCA+AGG	-	chr8_3:47180507-47180526	Msa1291710:intron	35.0%

Showing 1 to 10 of 140 entries

Previous1 2 3 4 5…14Next

Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	47180041	47180886	47180041	ID=Msa1291710;Name=Msa1291710
chr8_3	mRNA	47180041	47180886	47180041	ID=Msa1291710-mRNA-1;Parent=Msa1291710;Name=Msa1291710-mRNA-1;_AED=0.46;_eAED=0.51;_QI=0\|0\|0\|0.66\|1\|1\|3\|0\|123
chr8_3	exon	47180842	47180886	47180842	ID=Msa1291710-mRNA-1:exon:13184;Parent=Msa1291710-mRNA-1
chr8_3	exon	47180396	47180470	47180396	ID=Msa1291710-mRNA-1:exon:13183;Parent=Msa1291710-mRNA-1
chr8_3	exon	47180041	47180292	47180041	ID=Msa1291710-mRNA-1:exon:13182;Parent=Msa1291710-mRNA-1
chr8_3	CDS	47180842	47180886	47180842	ID=Msa1291710-mRNA-1:cds;Parent=Msa1291710-mRNA-1
chr8_3	CDS	47180396	47180470	47180396	ID=Msa1291710-mRNA-1:cds;Parent=Msa1291710-mRNA-1
chr8_3	CDS	47180041	47180292	47180041	ID=Msa1291710-mRNA-1:cds;Parent=Msa1291710-mRNA-1

Gene Sequence	>Msa1291710 ATGAATTGCACCATCAAGCCTCTGGTGAAGCTTGGCTTTCTCGAGATTGATGAGAATGTGGCTAGCGAGATTATCAACCACAGATCTCTTCGGCACCCGAATATAATTCGTTTCAAGGAGGTGGTTTTGACCCCTAATCATTTAGCAATAGTAACACAATATGCAGCTGGAGGGGAACTCTTTGAGAGGACCTGTAATGCTGGTCGGTTCAGCGAAGATGAGGTTAATAACTTGACATGGTTTCAGAATTTTCTGTTTCAGTGTCATTGTTGTTGTATTCATATCTCATTTATTTTTCCTTTGTTTATCCAGGCTAGATATTTCTTTCGGCAGCTGATATATGGTGTCTATTACTGTCATGCTATGGTATAA
Protein sequence	>Msa1291710 MNCTIKPLVKLGFLEIDENVASEIINHRSLRHPNIIRFKEVVLTPNHLAIVTQYAAGGELFERTCNAGRFSEDEVNNLTWFQNFLFQCHCCCIHISFIFPLFIQARYFFRQLIYGVYYCHAMV*