Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1291710 | BAX08112.1 | 58.678 | 121 | 44 | 3 | 8 | 122 | 48 | 168 | 4.73e-39 | 145 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1291710 | sp|P43291|SRK2A_ARATH | 58.678 | 121 | 16 | 2 | 6 | 122 | 27 | 117 | 6.95e-37 | 131 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1291710 | A0A1V1FM20 | 58.678 | 121 | 44 | 3 | 8 | 122 | 48 | 168 | 2.26e-39 | 145 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1291710 | MtrunA17_Chr8g0385281 | 59.200 | 125 | 17 | 2 | 2 | 122 | 24 | 118 | 1.68e-39 | 135 |
| Msa1291710 | MtrunA17_Chr3g0131061 | 56.800 | 125 | 20 | 2 | 2 | 122 | 23 | 117 | 5.68e-38 | 131 |
| Msa1291710 | MtrunA17_Chr2g0277501 | 57.025 | 121 | 18 | 2 | 6 | 122 | 27 | 117 | 9.65e-37 | 127 |
| Msa1291710 | MtrunA17_Chr4g0055451 | 57.143 | 119 | 17 | 2 | 8 | 122 | 30 | 118 | 3.80e-36 | 125 |
| Msa1291710 | MtrunA17_Chr4g0045371 | 56.303 | 119 | 18 | 2 | 8 | 122 | 48 | 136 | 4.28e-36 | 126 |
| Msa1291710 | MtrunA17_Chr1g0162301 | 56.303 | 119 | 18 | 2 | 8 | 122 | 49 | 137 | 5.60e-36 | 126 |
| Msa1291710 | MtrunA17_Chr8g0374571 | 54.545 | 121 | 21 | 2 | 6 | 122 | 46 | 136 | 1.23e-34 | 122 |
| Msa1291710 | MtrunA17_Chr8g0381821 | 56.140 | 114 | 19 | 2 | 9 | 122 | 35 | 117 | 3.02e-34 | 121 |
| Msa1291710 | MtrunA17_Chr5g0426521 | 52.459 | 122 | 24 | 2 | 6 | 123 | 27 | 118 | 3.90e-34 | 120 |
| Msa1291710 | MtrunA17_Chr5g0402661 | 51.240 | 121 | 25 | 2 | 6 | 122 | 41 | 131 | 2.98e-33 | 119 |
| Msa1291710 | MtrunA17_Chr3g0123791 | 56.881 | 109 | 17 | 1 | 14 | 122 | 40 | 118 | 1.39e-32 | 117 |
| Msa1291710 | MtrunA17_Chr5g0399911 | 54.206 | 107 | 19 | 1 | 16 | 122 | 56 | 132 | 3.11e-31 | 113 |
| Msa1291710 | MtrunA17_Chr4g0055431 | 50.420 | 119 | 25 | 2 | 8 | 122 | 36 | 124 | 7.80e-29 | 106 |
| Msa1291710 | MtrunA17_Chr8g0380661 | 45.370 | 108 | 29 | 1 | 15 | 122 | 40 | 117 | 1.15e-26 | 100 |
| Msa1291710 | MtrunA17_Chr5g0432491 | 34.951 | 103 | 37 | 1 | 19 | 121 | 67 | 139 | 1.79e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1291710 | AT1G10940.1 | 58.678 | 121 | 16 | 2 | 6 | 122 | 27 | 117 | 7.07e-38 | 131 |
| Msa1291710 | AT1G10940.2 | 59.504 | 121 | 23 | 3 | 6 | 122 | 27 | 125 | 1.47e-37 | 130 |
| Msa1291710 | AT1G60940.1 | 57.851 | 121 | 17 | 2 | 6 | 122 | 27 | 117 | 2.91e-37 | 129 |
| Msa1291710 | AT1G60940.2 | 57.851 | 121 | 17 | 2 | 6 | 122 | 27 | 117 | 2.91e-37 | 129 |
| Msa1291710 | AT3G50500.1 | 56.198 | 121 | 19 | 2 | 6 | 122 | 46 | 136 | 1.15e-36 | 128 |
| Msa1291710 | AT3G50500.2 | 56.198 | 121 | 19 | 2 | 6 | 122 | 46 | 136 | 1.17e-36 | 128 |
| Msa1291710 | AT4G33950.1 | 56.303 | 119 | 18 | 2 | 8 | 122 | 46 | 134 | 6.73e-36 | 126 |
| Msa1291710 | AT4G33950.2 | 56.303 | 119 | 18 | 2 | 8 | 122 | 46 | 134 | 6.78e-36 | 125 |
| Msa1291710 | AT5G66880.1 | 52.893 | 121 | 23 | 2 | 6 | 122 | 45 | 135 | 4.77e-35 | 124 |
| Msa1291710 | AT5G66880.2 | 52.893 | 121 | 23 | 2 | 6 | 122 | 45 | 135 | 4.77e-35 | 124 |
| Msa1291710 | AT5G63650.1 | 56.198 | 121 | 19 | 2 | 6 | 122 | 27 | 117 | 6.58e-35 | 123 |
| Msa1291710 | AT5G08590.1 | 53.719 | 121 | 22 | 2 | 6 | 122 | 27 | 117 | 1.14e-33 | 120 |
| Msa1291710 | AT4G40010.1 | 56.881 | 109 | 17 | 1 | 14 | 122 | 39 | 117 | 2.58e-33 | 119 |
| Msa1291710 | AT2G23030.1 | 50.400 | 125 | 28 | 2 | 2 | 122 | 23 | 117 | 4.51e-30 | 110 |
| Msa1291710 | AT1G78290.3 | 50.413 | 121 | 26 | 2 | 6 | 122 | 27 | 117 | 4.40e-29 | 107 |
| Msa1291710 | AT1G78290.2 | 50.413 | 121 | 26 | 2 | 6 | 122 | 27 | 117 | 4.40e-29 | 107 |
| Msa1291710 | AT4G11373.1 | 78.689 | 61 | 13 | 0 | 15 | 75 | 9 | 69 | 1.93e-27 | 98.2 |
| Msa1291710 | AT3G01090.3 | 34.234 | 111 | 43 | 1 | 10 | 120 | 54 | 134 | 3.88e-13 | 65.1 |
| Msa1291710 | AT3G01090.1 | 34.234 | 111 | 43 | 1 | 10 | 120 | 54 | 134 | 3.88e-13 | 65.1 |
| Msa1291710 | AT3G01090.2 | 34.234 | 111 | 43 | 1 | 10 | 120 | 77 | 157 | 3.91e-13 | 65.1 |
| Msa1291710 | AT5G35410.2 | 35.106 | 94 | 54 | 3 | 2 | 90 | 36 | 127 | 6.44e-12 | 61.2 |
| Msa1291710 | AT5G35410.1 | 35.106 | 94 | 54 | 3 | 2 | 90 | 36 | 127 | 6.81e-12 | 61.2 |
Find 31 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTACTATTGCTAAATGATT+AGG | 0.250308 | 8_3:+47180258 | None:intergenic |
| TTACTATTGCTAAATGATTA+GGG | 0.261994 | 8_3:+47180259 | None:intergenic |
| TTCTTTCGGCAGCTGATATA+TGG | 0.264209 | 8_3:-47180069 | Msa1291710:CDS |
| TCCTTGAAACGAATTATATT+CGG | 0.302255 | 8_3:+47180397 | None:intergenic |
| GCTGAACCGACCAGCATTAC+AGG | 0.337585 | 8_3:+47180200 | None:intergenic |
| TCCAGGCTAGATATTTCTTT+CGG | 0.398144 | 8_3:-47180083 | Msa1291710:CDS |
| CCCGAATATAATTCGTTTCA+AGG | 0.408070 | 8_3:-47180398 | Msa1291710:CDS |
| AGGCTTGATGGTGCAATTCA+TGG | 0.410361 | 8_3:+47180866 | None:intergenic |
| AAGCTTCACCAGAGGCTTGA+TGG | 0.417893 | 8_3:+47180854 | None:intergenic |
| CCTTGAAACGAATTATATTC+GGG | 0.472706 | 8_3:+47180398 | None:intergenic |
| ATCAAGCCTCTGGTGAAGCT+TGG | 0.488088 | 8_3:-47180852 | Msa1291710:CDS |
| GCCGAAAGAAATATCTAGCC+TGG | 0.496102 | 8_3:+47180082 | None:intergenic |
| GAATTGCACCATCAAGCCTC+TGG | 0.521090 | 8_3:-47180862 | Msa1291710:CDS |
| TTATCAACCACAGATCTCTT+CGG | 0.555612 | 8_3:-47180423 | Msa1291710:CDS |
| ATAGTAACACAATATGCAGC+TGG | 0.566363 | 8_3:-47180243 | Msa1291710:CDS |
| TTTCCAGATTGATGAGAATG+TGG | 0.567042 | 8_3:-47180455 | Msa1291710:intron |
| TTTGAGAGGACCTGTAATGC+TGG | 0.569556 | 8_3:-47180210 | Msa1291710:CDS |
| GGTGAAGCTTGGCTTTCTCG+AGG | 0.584023 | 8_3:-47180841 | Msa1291710:intron |
| AGAGGACCTGTAATGCTGGT+CGG | 0.592162 | 8_3:-47180206 | Msa1291710:CDS |
| AACACAATATGCAGCTGGAG+GGG | 0.600335 | 8_3:-47180238 | Msa1291710:CDS |
| TGTCTATTACTGTCATGCTA+TGG | 0.610007 | 8_3:-47180046 | Msa1291710:CDS |
| TATCTAGCCTGGATAAACAA+AGG | 0.613600 | 8_3:+47180093 | None:intergenic |
| TAACACAATATGCAGCTGGA+GGG | 0.615840 | 8_3:-47180239 | Msa1291710:CDS |
| TACTATTGCTAAATGATTAG+GGG | 0.616535 | 8_3:+47180260 | None:intergenic |
| ATGAGGTTAATAACTTGACA+TGG | 0.624734 | 8_3:-47180173 | Msa1291710:CDS |
| TGGTCGGTTCAGCGAAGATG+AGG | 0.629226 | 8_3:-47180190 | Msa1291710:CDS |
| CTGGAGGGGAACTCTTTGAG+AGG | 0.634190 | 8_3:-47180224 | Msa1291710:CDS |
| GTAACACAATATGCAGCTGG+AGG | 0.654060 | 8_3:-47180240 | Msa1291710:CDS |
| TCGGGTGCCGAAGAGATCTG+TGG | 0.687028 | 8_3:+47180416 | None:intergenic |
| AGAAAGCCAAGCTTCACCAG+AGG | 0.702351 | 8_3:+47180846 | None:intergenic |
| GAATATAATTCGTTTCAAGG+AGG | 0.712614 | 8_3:-47180395 | Msa1291710:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATAACTTTTCAAAATCA+GGG | + | chr8_3:47180350-47180369 | None:intergenic | 15.0% |
| !!! | AATAATAACTTTTCAAAATC+AGG | + | chr8_3:47180351-47180370 | None:intergenic | 15.0% |
| !!! | ATAATAACTTTTCAAAATCA+GGG | + | chr8_3:47180350-47180369 | None:intergenic | 15.0% |
| !!! | AATAATAACTTTTCAAAATC+AGG | + | chr8_3:47180351-47180370 | None:intergenic | 15.0% |
| !! | ACCAATGTTTATTAAAATAG+GGG | + | chr8_3:47180196-47180215 | None:intergenic | 20.0% |
| !! | CACCAATGTTTATTAAAATA+GGG | + | chr8_3:47180197-47180216 | None:intergenic | 20.0% |
| !! | CAAATTAAAGAAATTGAACA+GGG | - | chr8_3:47180277-47180296 | Msa1291710:intron | 20.0% |
| !! | AAATTAAAGAAATTGAACAG+GGG | - | chr8_3:47180278-47180297 | Msa1291710:intron | 20.0% |
| !!! | TAATAACTTTTCAAAATCAG+GGG | + | chr8_3:47180349-47180368 | None:intergenic | 20.0% |
| !!! | GTTATTATTTGTTGAAAAGA+AGG | - | chr8_3:47180362-47180381 | Msa1291710:intron | 20.0% |
| !! | TTACTATTGCTAAATGATTA+GGG | + | chr8_3:47180649-47180668 | None:intergenic | 20.0% |
| !! | ACCAATGTTTATTAAAATAG+GGG | + | chr8_3:47180196-47180215 | None:intergenic | 20.0% |
| !! | CACCAATGTTTATTAAAATA+GGG | + | chr8_3:47180197-47180216 | None:intergenic | 20.0% |
| !! | CAAATTAAAGAAATTGAACA+GGG | - | chr8_3:47180277-47180296 | Msa1291710:intron | 20.0% |
| !! | AAATTAAAGAAATTGAACAG+GGG | - | chr8_3:47180278-47180297 | Msa1291710:intron | 20.0% |
| !!! | TAATAACTTTTCAAAATCAG+GGG | + | chr8_3:47180349-47180368 | None:intergenic | 20.0% |
| !!! | GTTATTATTTGTTGAAAAGA+AGG | - | chr8_3:47180362-47180381 | Msa1291710:intron | 20.0% |
| !! | TTACTATTGCTAAATGATTA+GGG | + | chr8_3:47180649-47180668 | None:intergenic | 20.0% |
| !!! | AGACCATTTTTTCTCTTAAA+AGG | - | chr8_3:47180155-47180174 | Msa1291710:CDS | 25.0% |
| !!! | GACCATTTTTTCTCTTAAAA+GGG | - | chr8_3:47180156-47180175 | Msa1291710:CDS | 25.0% |
| !!! | AACCCTTTTAAGAGAAAAAA+TGG | + | chr8_3:47180161-47180180 | None:intergenic | 25.0% |
| !!! | TCCCCTATTTTAATAAACAT+TGG | - | chr8_3:47180192-47180211 | Msa1291710:CDS | 25.0% |
| ! | CCACCAATGTTTATTAAAAT+AGG | + | chr8_3:47180198-47180217 | None:intergenic | 25.0% |
| !!! | CCTATTTTAATAAACATTGG+TGG | - | chr8_3:47180195-47180214 | Msa1291710:CDS | 25.0% |
| ! | GCAAATTAAAGAAATTGAAC+AGG | - | chr8_3:47180276-47180295 | Msa1291710:intron | 25.0% |
| !!! | AAAGCTATTATTTTGACATC+TGG | - | chr8_3:47180389-47180408 | Msa1291710:intron | 25.0% |
| !!! | AAGCTATTATTTTGACATCT+GGG | - | chr8_3:47180390-47180409 | Msa1291710:intron | 25.0% |
| ! | TCCTTGAAACGAATTATATT+CGG | + | chr8_3:47180511-47180530 | None:intergenic | 25.0% |
| !! | TTGTTAACTGTTACTTCAAT+GGG | - | chr8_3:47180597-47180616 | Msa1291710:intron | 25.0% |
| ! | TACTATTGCTAAATGATTAG+GGG | + | chr8_3:47180648-47180667 | None:intergenic | 25.0% |
| ! | GTTACTATTGCTAAATGATT+AGG | + | chr8_3:47180650-47180669 | None:intergenic | 25.0% |
| !!! | TATTTTTCCTTTGTTTATCC+AGG | - | chr8_3:47180805-47180824 | Msa1291710:intron | 25.0% |
| !!! | AGACCATTTTTTCTCTTAAA+AGG | - | chr8_3:47180155-47180174 | Msa1291710:CDS | 25.0% |
| !!! | GACCATTTTTTCTCTTAAAA+GGG | - | chr8_3:47180156-47180175 | Msa1291710:CDS | 25.0% |
| !!! | AACCCTTTTAAGAGAAAAAA+TGG | + | chr8_3:47180161-47180180 | None:intergenic | 25.0% |
| !!! | TCCCCTATTTTAATAAACAT+TGG | - | chr8_3:47180192-47180211 | Msa1291710:CDS | 25.0% |
| ! | CCACCAATGTTTATTAAAAT+AGG | + | chr8_3:47180198-47180217 | None:intergenic | 25.0% |
| !!! | CCTATTTTAATAAACATTGG+TGG | - | chr8_3:47180195-47180214 | Msa1291710:CDS | 25.0% |
| ! | GCAAATTAAAGAAATTGAAC+AGG | - | chr8_3:47180276-47180295 | Msa1291710:intron | 25.0% |
| !!! | AAAGCTATTATTTTGACATC+TGG | - | chr8_3:47180389-47180408 | Msa1291710:intron | 25.0% |
| !!! | AAGCTATTATTTTGACATCT+GGG | - | chr8_3:47180390-47180409 | Msa1291710:intron | 25.0% |
| ! | TCCTTGAAACGAATTATATT+CGG | + | chr8_3:47180511-47180530 | None:intergenic | 25.0% |
| !! | TTGTTAACTGTTACTTCAAT+GGG | - | chr8_3:47180597-47180616 | Msa1291710:intron | 25.0% |
| ! | TACTATTGCTAAATGATTAG+GGG | + | chr8_3:47180648-47180667 | None:intergenic | 25.0% |
| ! | GTTACTATTGCTAAATGATT+AGG | + | chr8_3:47180650-47180669 | None:intergenic | 25.0% |
| !!! | TATTTTTCCTTTGTTTATCC+AGG | - | chr8_3:47180805-47180824 | Msa1291710:intron | 25.0% |
| CCTTGAAACGAATTATATTC+GGG | + | chr8_3:47180510-47180529 | None:intergenic | 30.0% | |
| GAATATAATTCGTTTCAAGG+AGG | - | chr8_3:47180510-47180529 | Msa1291710:intron | 30.0% | |
| ! | GACTTTATTTGTTTACCTGT+TGG | - | chr8_3:47180537-47180556 | Msa1291710:intron | 30.0% |
| ! | GTTGTTAACTGTTACTTCAA+TGG | - | chr8_3:47180596-47180615 | Msa1291710:intron | 30.0% |
| ! | TGTTAACTGTTACTTCAATG+GGG | - | chr8_3:47180598-47180617 | Msa1291710:intron | 30.0% |
| ATGAGGTTAATAACTTGACA+TGG | - | chr8_3:47180732-47180751 | Msa1291710:intron | 30.0% | |
| CCTTGAAACGAATTATATTC+GGG | + | chr8_3:47180510-47180529 | None:intergenic | 30.0% | |
| GAATATAATTCGTTTCAAGG+AGG | - | chr8_3:47180510-47180529 | Msa1291710:intron | 30.0% | |
| ! | GACTTTATTTGTTTACCTGT+TGG | - | chr8_3:47180537-47180556 | Msa1291710:intron | 30.0% |
| ! | GTTGTTAACTGTTACTTCAA+TGG | - | chr8_3:47180596-47180615 | Msa1291710:intron | 30.0% |
| ! | TGTTAACTGTTACTTCAATG+GGG | - | chr8_3:47180598-47180617 | Msa1291710:intron | 30.0% |
| ATGAGGTTAATAACTTGACA+TGG | - | chr8_3:47180732-47180751 | Msa1291710:intron | 30.0% | |
| TTTGCACAAATGCATTGAAG+CGG | + | chr8_3:47180261-47180280 | None:intergenic | 35.0% | |
| TTTCCAGATTGATGAGAATG+TGG | - | chr8_3:47180450-47180469 | Msa1291710:CDS | 35.0% | |
| TTATCAACCACAGATCTCTT+CGG | - | chr8_3:47180482-47180501 | Msa1291710:intron | 35.0% | |
| CCCGAATATAATTCGTTTCA+AGG | - | chr8_3:47180507-47180526 | Msa1291710:intron | 35.0% | |
| TAATTCGTTTCAAGGAGGTA+AGG | - | chr8_3:47180515-47180534 | Msa1291710:intron | 35.0% | |
| ATTTGTTTACCTGTTGGATC+AGG | - | chr8_3:47180543-47180562 | Msa1291710:intron | 35.0% | |
| !! | TACTTCAATGGGGTTTTGAT+TGG | - | chr8_3:47180608-47180627 | Msa1291710:intron | 35.0% |
| ATAGTAACACAATATGCAGC+TGG | - | chr8_3:47180662-47180681 | Msa1291710:intron | 35.0% | |
| TATCTAGCCTGGATAAACAA+AGG | + | chr8_3:47180815-47180834 | None:intergenic | 35.0% | |
| TCCAGGCTAGATATTTCTTT+CGG | - | chr8_3:47180822-47180841 | Msa1291710:intron | 35.0% | |
| TGTCTATTACTGTCATGCTA+TGG | - | chr8_3:47180859-47180878 | Msa1291710:CDS | 35.0% | |
| TTTGCACAAATGCATTGAAG+CGG | + | chr8_3:47180261-47180280 | None:intergenic | 35.0% | |
| TTTCCAGATTGATGAGAATG+TGG | - | chr8_3:47180450-47180469 | Msa1291710:CDS | 35.0% | |
| TTATCAACCACAGATCTCTT+CGG | - | chr8_3:47180482-47180501 | Msa1291710:intron | 35.0% | |
| CCCGAATATAATTCGTTTCA+AGG | - | chr8_3:47180507-47180526 | Msa1291710:intron | 35.0% | |
| TAATTCGTTTCAAGGAGGTA+AGG | - | chr8_3:47180515-47180534 | Msa1291710:intron | 35.0% | |
| ATTTGTTTACCTGTTGGATC+AGG | - | chr8_3:47180543-47180562 | Msa1291710:intron | 35.0% | |
| !! | TACTTCAATGGGGTTTTGAT+TGG | - | chr8_3:47180608-47180627 | Msa1291710:intron | 35.0% |
| ATAGTAACACAATATGCAGC+TGG | - | chr8_3:47180662-47180681 | Msa1291710:intron | 35.0% | |
| TATCTAGCCTGGATAAACAA+AGG | + | chr8_3:47180815-47180834 | None:intergenic | 35.0% | |
| TCCAGGCTAGATATTTCTTT+CGG | - | chr8_3:47180822-47180841 | Msa1291710:intron | 35.0% | |
| TGTCTATTACTGTCATGCTA+TGG | - | chr8_3:47180859-47180878 | Msa1291710:CDS | 35.0% | |
| TTGCCTTGAATACCGATACT+CGG | - | chr8_3:47180088-47180107 | Msa1291710:CDS | 40.0% | |
| !! | ATACCGAGTATCGGTATTCA+AGG | + | chr8_3:47180094-47180113 | None:intergenic | 40.0% |
| AAGCGGCCTAAAAAATTCGA+GGG | + | chr8_3:47180244-47180263 | None:intergenic | 40.0% | |
| TAGCCACATTCTCATCAATC+TGG | + | chr8_3:47180456-47180475 | None:intergenic | 40.0% | |
| TCAATACAACCTGATCCAAC+AGG | + | chr8_3:47180555-47180574 | None:intergenic | 40.0% | |
| TAACACAATATGCAGCTGGA+GGG | - | chr8_3:47180666-47180685 | Msa1291710:intron | 40.0% | |
| TTCTTTCGGCAGCTGATATA+TGG | - | chr8_3:47180836-47180855 | Msa1291710:intron | 40.0% | |
| TTGCCTTGAATACCGATACT+CGG | - | chr8_3:47180088-47180107 | Msa1291710:CDS | 40.0% | |
| !! | ATACCGAGTATCGGTATTCA+AGG | + | chr8_3:47180094-47180113 | None:intergenic | 40.0% |
| AAGCGGCCTAAAAAATTCGA+GGG | + | chr8_3:47180244-47180263 | None:intergenic | 40.0% | |
| TAGCCACATTCTCATCAATC+TGG | + | chr8_3:47180456-47180475 | None:intergenic | 40.0% | |
| TCAATACAACCTGATCCAAC+AGG | + | chr8_3:47180555-47180574 | None:intergenic | 40.0% | |
| TAACACAATATGCAGCTGGA+GGG | - | chr8_3:47180666-47180685 | Msa1291710:intron | 40.0% | |
| TTCTTTCGGCAGCTGATATA+TGG | - | chr8_3:47180836-47180855 | Msa1291710:intron | 40.0% | |
| GGAGCATGAATACCGAGTAT+CGG | + | chr8_3:47180103-47180122 | None:intergenic | 45.0% | |
| TCGAGATTATTCTAGCCAGG+AGG | + | chr8_3:47180124-47180143 | None:intergenic | 45.0% | |
| TCCTGGCTAGAATAATCTCG+AGG | - | chr8_3:47180123-47180142 | Msa1291710:CDS | 45.0% | |
| ACCTCGAGATTATTCTAGCC+AGG | + | chr8_3:47180127-47180146 | None:intergenic | 45.0% | |
| !!! | GAGCAGCCCTCGAATTTTTT+AGG | - | chr8_3:47180235-47180254 | Msa1291710:CDS | 45.0% |
| GAAGCGGCCTAAAAAATTCG+AGG | + | chr8_3:47180245-47180264 | None:intergenic | 45.0% | |
| !!! | CAATGGGGTTTTGATTGGTC+AGG | - | chr8_3:47180613-47180632 | Msa1291710:intron | 45.0% |
| GTAACACAATATGCAGCTGG+AGG | - | chr8_3:47180665-47180684 | Msa1291710:intron | 45.0% | |
| AACACAATATGCAGCTGGAG+GGG | - | chr8_3:47180667-47180686 | Msa1291710:intron | 45.0% | |
| TTTGAGAGGACCTGTAATGC+TGG | - | chr8_3:47180695-47180714 | Msa1291710:intron | 45.0% | |
| GCCGAAAGAAATATCTAGCC+TGG | + | chr8_3:47180826-47180845 | None:intergenic | 45.0% | |
| GGAGCATGAATACCGAGTAT+CGG | + | chr8_3:47180103-47180122 | None:intergenic | 45.0% | |
| TCGAGATTATTCTAGCCAGG+AGG | + | chr8_3:47180124-47180143 | None:intergenic | 45.0% | |
| TCCTGGCTAGAATAATCTCG+AGG | - | chr8_3:47180123-47180142 | Msa1291710:CDS | 45.0% | |
| ACCTCGAGATTATTCTAGCC+AGG | + | chr8_3:47180127-47180146 | None:intergenic | 45.0% | |
| !!! | GAGCAGCCCTCGAATTTTTT+AGG | - | chr8_3:47180235-47180254 | Msa1291710:CDS | 45.0% |
| GAAGCGGCCTAAAAAATTCG+AGG | + | chr8_3:47180245-47180264 | None:intergenic | 45.0% | |
| !!! | CAATGGGGTTTTGATTGGTC+AGG | - | chr8_3:47180613-47180632 | Msa1291710:intron | 45.0% |
| GTAACACAATATGCAGCTGG+AGG | - | chr8_3:47180665-47180684 | Msa1291710:intron | 45.0% | |
| AACACAATATGCAGCTGGAG+GGG | - | chr8_3:47180667-47180686 | Msa1291710:intron | 45.0% | |
| TTTGAGAGGACCTGTAATGC+TGG | - | chr8_3:47180695-47180714 | Msa1291710:intron | 45.0% | |
| GCCGAAAGAAATATCTAGCC+TGG | + | chr8_3:47180826-47180845 | None:intergenic | 45.0% | |
| GAATTGCACCATCAAGCCTC+TGG | - | chr8_3:47180043-47180062 | Msa1291710:CDS | 50.0% | |
| AAGCTTCACCAGAGGCTTGA+TGG | + | chr8_3:47180054-47180073 | None:intergenic | 50.0% | |
| ATCAAGCCTCTGGTGAAGCT+TGG | - | chr8_3:47180053-47180072 | Msa1291710:CDS | 50.0% | |
| AGAAAGCCAAGCTTCACCAG+AGG | + | chr8_3:47180062-47180081 | None:intergenic | 50.0% | |
| !!! | TGGGGTTTTGATTGGTCAGG+TGG | - | chr8_3:47180616-47180635 | Msa1291710:intron | 50.0% |
| AGAGGACCTGTAATGCTGGT+CGG | - | chr8_3:47180699-47180718 | Msa1291710:intron | 50.0% | |
| GAATTGCACCATCAAGCCTC+TGG | - | chr8_3:47180043-47180062 | Msa1291710:CDS | 50.0% | |
| AAGCTTCACCAGAGGCTTGA+TGG | + | chr8_3:47180054-47180073 | None:intergenic | 50.0% | |
| ATCAAGCCTCTGGTGAAGCT+TGG | - | chr8_3:47180053-47180072 | Msa1291710:CDS | 50.0% | |
| AGAAAGCCAAGCTTCACCAG+AGG | + | chr8_3:47180062-47180081 | None:intergenic | 50.0% | |
| !!! | TGGGGTTTTGATTGGTCAGG+TGG | - | chr8_3:47180616-47180635 | Msa1291710:intron | 50.0% |
| AGAGGACCTGTAATGCTGGT+CGG | - | chr8_3:47180699-47180718 | Msa1291710:intron | 50.0% | |
| ! | GGTGAAGCTTGGCTTTCTCG+AGG | - | chr8_3:47180064-47180083 | Msa1291710:CDS | 55.0% |
| CTCGGTATTCATGCTCCTCC+TGG | - | chr8_3:47180106-47180125 | Msa1291710:CDS | 55.0% | |
| CTGGAGGGGAACTCTTTGAG+AGG | - | chr8_3:47180681-47180700 | Msa1291710:intron | 55.0% | |
| GCTGAACCGACCAGCATTAC+AGG | + | chr8_3:47180708-47180727 | None:intergenic | 55.0% | |
| ! | TGGTCGGTTCAGCGAAGATG+AGG | - | chr8_3:47180715-47180734 | Msa1291710:intron | 55.0% |
| ! | GGTGAAGCTTGGCTTTCTCG+AGG | - | chr8_3:47180064-47180083 | Msa1291710:CDS | 55.0% |
| CTCGGTATTCATGCTCCTCC+TGG | - | chr8_3:47180106-47180125 | Msa1291710:CDS | 55.0% | |
| CTGGAGGGGAACTCTTTGAG+AGG | - | chr8_3:47180681-47180700 | Msa1291710:intron | 55.0% | |
| GCTGAACCGACCAGCATTAC+AGG | + | chr8_3:47180708-47180727 | None:intergenic | 55.0% | |
| ! | TGGTCGGTTCAGCGAAGATG+AGG | - | chr8_3:47180715-47180734 | Msa1291710:intron | 55.0% |
| !! | TCGGGTGCCGAAGAGATCTG+TGG | + | chr8_3:47180492-47180511 | None:intergenic | 60.0% |
| !! | TCGGGTGCCGAAGAGATCTG+TGG | + | chr8_3:47180492-47180511 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 47180041 | 47180886 | 47180041 | ID=Msa1291710;Name=Msa1291710 |
| chr8_3 | mRNA | 47180041 | 47180886 | 47180041 | ID=Msa1291710-mRNA-1;Parent=Msa1291710;Name=Msa1291710-mRNA-1;_AED=0.46;_eAED=0.51;_QI=0|0|0|0.66|1|1|3|0|123 |
| chr8_3 | exon | 47180842 | 47180886 | 47180842 | ID=Msa1291710-mRNA-1:exon:13184;Parent=Msa1291710-mRNA-1 |
| chr8_3 | exon | 47180396 | 47180470 | 47180396 | ID=Msa1291710-mRNA-1:exon:13183;Parent=Msa1291710-mRNA-1 |
| chr8_3 | exon | 47180041 | 47180292 | 47180041 | ID=Msa1291710-mRNA-1:exon:13182;Parent=Msa1291710-mRNA-1 |
| chr8_3 | CDS | 47180842 | 47180886 | 47180842 | ID=Msa1291710-mRNA-1:cds;Parent=Msa1291710-mRNA-1 |
| chr8_3 | CDS | 47180396 | 47180470 | 47180396 | ID=Msa1291710-mRNA-1:cds;Parent=Msa1291710-mRNA-1 |
| chr8_3 | CDS | 47180041 | 47180292 | 47180041 | ID=Msa1291710-mRNA-1:cds;Parent=Msa1291710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
