AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1292160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1292160 MtrunA17_Chr8g0366921 87.730 326 34 1 1 326 1 320 2.74e-140 405
Msa1292160 MtrunA17_Chr6g0470151 42.895 380 176 6 1 367 1 352 3.74e-56 191
Msa1292160 MtrunA17_Chr2g0289181 60.000 130 52 0 332 461 1 130 1.28e-49 169
Msa1292160 MtrunA17_Chr8g0368721 50.153 327 147 4 1 326 1 312 1.51e-47 166
Msa1292160 MtrunA17_Chr7g0266621 41.194 335 155 6 1 327 1 301 1.70e-35 133
Msa1292160 MtrunA17_Chr2g0293901 51.630 184 74 3 1 184 1 169 8.81e-33 123
Msa1292160 MtrunA17_Chr1g0202461 48.958 96 48 1 325 420 241 335 3.88e-26 109
Msa1292160 MtrunA17_Chr8g0348311 48.958 96 48 1 323 418 133 227 1.29e-23 101
Msa1292160 MtrunA17_Chr7g0248691 47.917 96 49 1 323 418 132 226 7.86e-23 99.0
Msa1292160 MtrunA17_Chr8g0387501 59.722 72 28 1 346 417 130 200 1.49e-21 94.4
Msa1292160 MtrunA17_Chr7g0270051 43.925 107 55 1 304 405 7 113 2.58e-19 87.4
Msa1292160 MtrunA17_Chr4g0053281 45.263 95 51 1 319 413 241 334 2.03e-18 86.3
Msa1292160 MtrunA17_Chr5g0401821 54.167 72 32 1 331 402 186 256 6.97e-18 83.6
Msa1292160 MtrunA17_Chr4g0071521 49.398 83 41 1 320 402 221 302 8.17e-18 84.3
Msa1292160 MtrunA17_Chr2g0293481 50.000 76 37 1 346 421 268 342 1.21e-17 85.1
Msa1292160 MtrunA17_Chr1g0184691 56.164 73 28 1 339 407 287 359 1.25e-17 84.3
Msa1292160 MtrunA17_Chr2g0319961 58.333 60 25 0 346 405 81 140 3.42e-17 81.3
Msa1292160 MtrunA17_Chr7g0249311 46.739 92 47 2 335 426 169 258 4.44e-17 84.0
Msa1292160 MtrunA17_Chr7g0249311 44.048 84 45 2 334 416 380 462 1.06e-13 73.6
Msa1292160 MtrunA17_Chr2g0284321 56.667 60 26 0 346 405 36 95 7.35e-17 79.3
Msa1292160 MtrunA17_Chr8g0379461 52.381 63 30 0 346 408 77 139 8.91e-17 79.7
Msa1292160 MtrunA17_Chr1g0147881 44.898 98 45 3 325 414 238 334 2.27e-16 80.1
Msa1292160 MtrunA17_Chr7g0249301 43.158 95 52 2 335 429 52 144 2.46e-16 80.5
Msa1292160 MtrunA17_Chr7g0249301 48.438 64 32 1 343 406 290 352 1.22e-12 69.3
Msa1292160 MtrunA17_Chr3g0139021 48.780 82 37 2 325 402 291 371 7.18e-16 79.3
Msa1292160 MtrunA17_Chr7g0263531 51.316 76 35 2 330 405 174 247 8.90e-16 79.3
Msa1292160 MtrunA17_Chr7g0263531 38.384 99 44 3 325 408 327 423 5.20e-14 73.9
Msa1292160 MtrunA17_Chr7g0218081 47.126 87 37 3 341 427 224 301 9.60e-16 79.7
Msa1292160 MtrunA17_Chr7g0218081 53.226 62 28 1 345 406 410 470 1.94e-14 75.5
Msa1292160 MtrunA17_Chr7g0228941 45.070 71 39 0 343 413 50 120 1.68e-15 72.8
Msa1292160 MtrunA17_Chr7g0243891 52.778 72 32 2 337 408 208 277 3.99e-15 77.8
Msa1292160 MtrunA17_Chr7g0243891 46.875 64 33 1 343 406 372 434 8.63e-11 63.9
Msa1292160 MtrunA17_Chr3g0079691 44.118 102 53 4 314 415 251 348 6.40e-15 77.4
Msa1292160 MtrunA17_Chr3g0079691 48.438 64 32 1 343 406 493 555 1.02e-12 70.5
Msa1292160 MtrunA17_Chr4g0042831 39.583 96 52 2 345 440 278 367 9.81e-15 75.9
Msa1292160 MtrunA17_Chr4g0042831 44.286 70 38 1 336 405 136 204 1.87e-12 68.6
Msa1292160 MtrunA17_Chr3g0101131 52.941 68 30 2 338 405 236 301 2.03e-14 75.5
Msa1292160 MtrunA17_Chr3g0101131 44.928 69 37 1 343 411 413 480 2.44e-12 68.9
Msa1292160 MtrunA17_Chr5g0447701 49.275 69 31 3 341 408 88 153 2.58e-14 74.3
Msa1292160 MtrunA17_Chr5g0447701 49.206 63 31 1 343 405 250 311 6.62e-11 63.9
Msa1292160 MtrunA17_Chr5g0443131 51.613 62 29 1 345 406 157 217 6.81e-14 72.4
Msa1292160 MtrunA17_Chr7g0266611 56.923 65 28 0 400 464 2 66 7.54e-14 69.3
Msa1292160 MtrunA17_Chr5g0418191 49.254 67 33 1 345 411 320 385 1.52e-13 72.4
Msa1292160 MtrunA17_Chr5g0418191 48.684 76 37 2 336 411 142 215 1.31e-12 69.3
Msa1292160 MtrunA17_Chr3g0106491 47.436 78 34 3 331 408 189 259 2.52e-13 72.0
Msa1292160 MtrunA17_Chr3g0106491 46.875 64 33 1 343 406 363 425 5.06e-11 64.7
Msa1292160 MtrunA17_Chr4g0074001 49.206 63 31 1 343 405 357 418 2.71e-13 72.0
Msa1292160 MtrunA17_Chr3g0129321 42.647 68 38 1 342 409 115 181 4.32e-13 68.2
Msa1292160 MtrunA17_Chr1g0194481 37.778 90 54 2 325 414 139 226 5.67e-13 69.7
Msa1292160 MtrunA17_Chr5g0432161 51.562 64 29 2 342 405 241 302 6.70e-13 70.9
Msa1292160 MtrunA17_Chr5g0432161 50.000 64 31 1 343 406 419 481 2.24e-12 69.3
Msa1292160 MtrunA17_Chr7g0238921 46.053 76 40 1 327 402 106 180 7.24e-13 69.3
Msa1292160 MtrunA17_Chr4g0051881 42.667 75 41 2 331 405 165 237 7.52e-13 69.7
Msa1292160 MtrunA17_Chr5g0445311 46.875 64 33 1 343 406 362 424 1.32e-12 69.7
Msa1292160 MtrunA17_Chr5g0445311 53.226 62 27 2 344 405 199 258 1.56e-12 69.7
Msa1292160 MtrunA17_Chr4g0068541 41.333 75 42 2 331 405 195 267 2.55e-12 68.6
Msa1292160 MtrunA17_Chr4g0001361 35.652 115 66 2 343 457 160 266 5.03e-12 67.0
Msa1292160 MtrunA17_Chr7g0270191 38.202 89 53 2 325 413 126 212 5.28e-12 66.6
Msa1292160 MtrunA17_Chr4g0004911 41.558 77 44 1 329 405 168 243 5.46e-12 67.8
Msa1292160 MtrunA17_Chr4g0004911 47.619 63 32 1 343 405 334 395 7.51e-12 67.4
Msa1292160 MtrunA17_Chr8g0335811 50.000 62 26 3 343 402 152 210 8.24e-12 65.1
Msa1292160 MtrunA17_Chr3g0099641 28.387 155 92 5 260 405 167 311 9.25e-12 67.0
Msa1292160 MtrunA17_Chr2g0302391 45.000 60 33 0 346 405 212 271 9.84e-12 66.6
Msa1292160 MtrunA17_Chr3g0136961 46.552 58 31 0 345 402 138 195 1.48e-11 65.1
Msa1292160 MtrunA17_Chr2g0294231 46.774 62 32 1 345 406 203 263 1.55e-11 65.9
Msa1292160 MtrunA17_Chr2g0333851 45.312 64 35 0 343 406 167 230 1.76e-11 65.1
Msa1292160 MtrunA17_Chr5g0418781 39.080 87 51 2 316 402 96 180 1.80e-11 64.7
Msa1292160 MtrunA17_Chr8g0387981 36.264 91 53 2 312 400 102 189 2.93e-11 64.7
Msa1292160 MtrunA17_Chr8g0383251 35.955 89 53 3 320 405 80 167 4.15e-11 62.0
Msa1292160 MtrunA17_Chr3g0128671 36.207 116 54 4 314 416 103 211 4.18e-11 63.9
Msa1292160 MtrunA17_Chr8g0383351 42.424 66 36 2 343 408 158 221 6.59e-11 62.4
Msa1292160 MtrunA17_Chr7g0224801 37.662 77 45 2 343 417 91 166 6.74e-11 60.8
Msa1292160 MtrunA17_Chr1g0150271 43.284 67 38 0 343 409 99 165 9.11e-11 62.4
Msa1292160 MtrunA17_Chr1g0188941 41.270 63 36 1 343 405 49 110 9.83e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1292160 AT4G01250.1 37.736 159 82 4 264 422 63 204 1.89e-25 106
Msa1292160 AT5G52830.1 46.875 96 50 1 325 420 145 239 3.08e-23 100
Msa1292160 AT4G23550.1 48.387 93 47 1 329 421 124 215 1.30e-22 98.6
Msa1292160 AT5G45050.1 44.330 97 54 0 309 405 1144 1240 8.79e-20 93.2
Msa1292160 AT5G45050.4 44.330 97 54 0 309 405 1005 1101 9.89e-20 93.2
Msa1292160 AT5G45050.2 44.330 97 54 0 309 405 1116 1212 1.04e-19 93.2
Msa1292160 AT4G31550.2 48.315 89 43 1 325 410 222 310 1.03e-18 87.4
Msa1292160 AT4G31550.1 47.727 88 43 1 326 410 224 311 3.63e-18 85.9
Msa1292160 AT2G24570.1 48.889 90 45 1 313 402 212 300 6.94e-18 84.7
Msa1292160 AT2G23320.1 59.649 57 23 0 346 402 241 297 2.19e-17 83.2
Msa1292160 AT2G34830.1 44.578 83 45 1 332 414 202 283 2.39e-17 84.3
Msa1292160 AT4G24240.1 55.556 72 31 1 331 402 268 338 2.47e-17 83.6
Msa1292160 AT2G34830.2 44.578 83 45 1 332 414 211 292 2.51e-17 84.3
Msa1292160 AT5G28650.1 42.718 103 56 1 305 404 219 321 3.04e-17 83.2
Msa1292160 AT1G30650.1 44.578 83 45 1 332 414 204 285 9.40e-17 82.8
Msa1292160 AT3G04670.1 59.322 59 24 0 346 404 263 321 9.66e-17 81.6
Msa1292160 AT3G01080.3 41.667 96 48 3 341 430 201 294 1.11e-16 81.3
Msa1292160 AT1G29280.1 56.667 60 26 0 346 405 75 134 1.14e-16 80.1
Msa1292160 AT3G58710.1 52.308 65 31 0 346 410 72 136 1.18e-16 80.5
Msa1292160 AT3G58710.2 52.308 65 31 0 346 410 71 135 1.19e-16 80.5
Msa1292160 AT3G01080.1 41.667 96 48 3 341 430 163 256 3.47e-16 80.9
Msa1292160 AT3G01080.1 52.459 61 28 1 345 405 306 365 6.02e-14 73.9
Msa1292160 AT3G01080.2 41.667 96 48 3 341 430 201 294 4.12e-16 80.9
Msa1292160 AT3G01080.2 52.459 61 28 1 345 405 344 403 5.34e-14 74.3
Msa1292160 AT2G30590.1 45.783 83 42 1 325 404 290 372 8.32e-16 79.3
Msa1292160 AT5G07100.1 38.793 116 64 3 338 447 110 224 1.15e-15 78.2
Msa1292160 AT5G07100.1 47.619 63 32 1 343 405 232 293 1.21e-12 68.9
Msa1292160 AT5G07100.2 39.474 114 62 3 340 447 19 131 2.21e-15 75.5
Msa1292160 AT5G07100.2 47.619 63 32 1 343 405 139 200 1.63e-12 67.0
Msa1292160 AT5G07100.4 39.474 114 62 3 340 447 19 131 2.21e-15 75.5
Msa1292160 AT5G07100.4 47.619 63 32 1 343 405 139 200 1.63e-12 67.0
Msa1292160 AT5G07100.5 39.474 114 62 3 340 447 19 131 2.21e-15 75.5
Msa1292160 AT5G07100.5 47.619 63 32 1 343 405 139 200 1.63e-12 67.0
Msa1292160 AT5G07100.3 39.474 114 62 3 340 447 19 131 2.21e-15 75.5
Msa1292160 AT5G07100.3 47.619 63 32 1 343 405 139 200 1.63e-12 67.0
Msa1292160 AT2G30250.1 39.844 128 57 7 295 405 100 224 6.75e-15 76.6
Msa1292160 AT2G30250.1 51.667 60 28 1 346 405 329 387 3.05e-12 68.6
Msa1292160 AT4G26440.1 50.685 73 34 2 344 416 177 247 1.08e-14 77.0
Msa1292160 AT4G26440.1 47.297 74 38 1 343 416 370 442 9.03e-14 73.9
Msa1292160 AT2G38470.1 51.282 78 33 4 329 405 169 242 2.92e-14 75.5
Msa1292160 AT2G38470.1 48.438 64 32 1 343 406 360 422 2.22e-12 69.3
Msa1292160 AT2G03340.1 51.613 62 29 1 345 406 415 475 4.15e-14 74.7
Msa1292160 AT2G03340.1 47.312 93 41 4 340 426 245 335 5.61e-14 74.3
Msa1292160 AT5G56270.1 52.941 68 30 2 344 411 272 337 1.18e-13 73.9
Msa1292160 AT5G56270.1 48.438 64 32 1 343 406 485 547 2.39e-12 69.7
Msa1292160 AT1G13960.1 42.222 90 44 4 323 407 203 289 1.25e-13 73.6
Msa1292160 AT1G13960.1 49.180 61 30 1 345 405 409 468 9.50e-13 70.5
Msa1292160 AT5G41570.1 35.135 111 67 3 319 425 70 179 2.03e-13 68.9
Msa1292160 AT1G13960.2 42.222 90 44 4 323 407 50 136 2.12e-13 72.0
Msa1292160 AT1G13960.2 49.180 61 30 1 345 405 256 315 1.22e-12 69.7
Msa1292160 AT4G26640.7 39.048 105 57 4 343 444 169 269 2.36e-13 72.4
Msa1292160 AT4G26640.7 44.444 63 34 1 343 405 339 400 2.64e-11 66.2
Msa1292160 AT2G37260.1 42.683 82 41 3 325 402 326 405 2.37e-13 72.0
Msa1292160 AT2G37260.1 50.746 67 31 2 340 406 160 224 5.68e-13 70.9
Msa1292160 AT4G26640.2 39.048 105 57 4 343 444 209 309 2.54e-13 72.4
Msa1292160 AT4G26640.2 44.444 63 34 1 343 405 379 440 2.84e-11 66.2
Msa1292160 AT2G37260.3 42.683 82 41 3 325 402 246 325 3.03e-13 71.2
Msa1292160 AT2G37260.3 50.746 67 31 2 340 406 80 144 7.05e-13 70.1
Msa1292160 AT2G37260.2 42.683 82 41 3 325 402 244 323 3.24e-13 71.2
Msa1292160 AT2G37260.2 50.746 67 31 2 340 406 78 142 7.09e-13 70.1
Msa1292160 AT4G26640.1 39.048 105 57 4 343 444 137 237 3.51e-13 72.0
Msa1292160 AT4G26640.1 44.444 63 34 1 343 405 307 368 3.39e-11 65.9
Msa1292160 AT4G26640.5 39.048 105 57 4 343 444 33 133 4.39e-13 71.2
Msa1292160 AT4G26640.5 44.444 63 34 1 343 405 203 264 2.87e-11 65.5
Msa1292160 AT4G26640.6 39.048 105 57 4 343 444 33 133 4.39e-13 71.2
Msa1292160 AT4G26640.6 44.444 63 34 1 343 405 203 264 2.87e-11 65.5
Msa1292160 AT4G26640.4 39.048 105 57 4 343 444 33 133 4.39e-13 71.2
Msa1292160 AT4G26640.4 44.444 63 34 1 343 405 203 264 2.87e-11 65.5
Msa1292160 AT4G26640.3 39.048 105 57 4 343 444 33 133 4.39e-13 71.2
Msa1292160 AT4G26640.3 44.444 63 34 1 343 405 203 264 2.87e-11 65.5
Msa1292160 AT4G18170.1 33.333 126 76 3 282 407 116 233 6.67e-13 70.1
Msa1292160 AT2G21900.1 42.045 88 44 3 325 406 83 169 7.81e-13 67.8
Msa1292160 AT1G64000.1 39.241 79 47 1 324 402 93 170 1.11e-12 67.0
Msa1292160 AT2G47260.1 41.975 81 45 2 325 405 155 233 1.43e-12 68.9
Msa1292160 AT1G55600.1 52.381 63 23 3 346 405 308 366 1.49e-12 70.1
Msa1292160 AT4G30935.1 41.176 85 43 3 322 405 312 390 1.74e-12 69.7
Msa1292160 AT2G04880.1 40.404 99 58 1 307 405 269 366 1.94e-12 69.7
Msa1292160 AT2G04880.1 46.154 65 33 2 341 405 107 169 9.36e-12 67.4
Msa1292160 AT1G80840.1 38.095 84 41 1 343 426 144 216 2.21e-12 68.2
Msa1292160 AT2G04880.2 40.404 99 58 1 307 405 245 342 2.30e-12 69.3
Msa1292160 AT2G04880.2 46.154 65 33 2 341 405 107 169 9.50e-12 67.4
Msa1292160 AT1G69310.4 38.636 88 52 2 316 403 119 204 4.54e-12 67.0
Msa1292160 AT1G69310.2 38.636 88 52 2 316 403 119 204 4.54e-12 67.0
Msa1292160 AT1G69310.1 38.636 88 52 2 316 403 119 204 4.54e-12 67.0
Msa1292160 AT2G44745.1 50.000 62 26 3 343 402 143 201 4.84e-12 65.9
Msa1292160 AT5G45260.1 40.698 86 48 3 323 405 1185 1270 5.99e-12 68.6
Msa1292160 AT2G46130.1 46.667 60 31 1 343 402 28 86 6.88e-12 62.4
Msa1292160 AT5G26170.1 45.902 61 32 1 342 402 110 169 8.58e-12 63.9
Msa1292160 AT5G46350.1 41.558 77 43 2 331 407 170 244 9.70e-12 66.6
Msa1292160 AT1G29860.1 48.387 62 31 1 345 406 136 196 1.82e-11 65.1
Msa1292160 AT5G49520.1 45.902 61 32 1 345 405 221 280 1.98e-11 66.2
Msa1292160 AT5G13080.1 37.037 81 48 2 343 421 65 144 2.18e-11 62.0
Msa1292160 AT3G01970.1 42.466 73 39 2 343 413 63 134 2.35e-11 62.0
Msa1292160 AT5G43290.1 45.205 73 39 1 330 402 99 170 2.40e-11 64.7
Msa1292160 AT3G62340.1 36.145 83 50 2 325 405 96 177 3.65e-11 64.3
Msa1292160 AT1G80590.1 47.619 63 31 1 346 406 86 148 5.66e-11 63.2

Find 121 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAATTTGATGACATATTC+TGG 0.180052 8_3:-48209327 None:intergenic
GATAGTGGTGGTAGTGATTA+AGG 0.209006 8_3:-48207315 None:intergenic
CGAAAACAGACACTCGATTT+TGG 0.221712 8_3:-48207778 None:intergenic
TGGGCTTCTTGTGGTTCTAA+TGG 0.280250 8_3:-48207857 None:intergenic
TCATCAAATTCAGGATTAAA+TGG 0.283905 8_3:+48209337 Msa1292160:CDS
TGGATGTGGAGACCCTTTAA+TGG 0.287579 8_3:-48208198 None:intergenic
TTGGTTTAAGTGGGGATATT+GGG 0.289574 8_3:-48207205 None:intergenic
TGGGGTGTTGATAGTGGTTG+TGG 0.299407 8_3:-48207621 None:intergenic
TTTGGTTTAAGTGGGGATAT+TGG 0.307672 8_3:-48207206 None:intergenic
ATTTGCCTCATAGTTATTCA+TGG 0.314822 8_3:-48207687 None:intergenic
GTAGTTGATTATGATTTCTC+TGG 0.318896 8_3:-48207877 None:intergenic
TGGCAGTGGTAATGGTGGTT+GGG 0.322394 8_3:-48207640 None:intergenic
AAAGGTGGCAGGAGCATTAT+AGG 0.323194 8_3:-48207057 None:intergenic
CAGAATATGTCATCAAATTC+AGG 0.324509 8_3:+48209328 Msa1292160:CDS
TAAAGCTGTAGAACTGGTTT+GGG 0.330914 8_3:-48207912 None:intergenic
GTTGAGTTCAGGATGAAAAT+TGG 0.333089 8_3:-48207831 None:intergenic
ACTCGAGCCTTGCTGCTCTT+TGG 0.335557 8_3:-48209436 None:intergenic
ATGAAGTCATTTGGTTTAAG+TGG 0.343698 8_3:-48207215 None:intergenic
TCATGGAGGTGGAGAAAATA+TGG 0.346074 8_3:+48208167 Msa1292160:CDS
CTCTCATGGAAAATGATGAT+TGG 0.350540 8_3:+48206997 None:intergenic
GTATCAGTGGTGATGTGATT+AGG 0.350550 8_3:-48207392 None:intergenic
GGGGTACTGGTACTGGGGTT+GGG 0.353482 8_3:-48207581 None:intergenic
TAGTTGTGATGGGATTAAAT+TGG 0.355518 8_3:-48207535 None:intergenic
ACGGAATTCCAATTATTTGC+TGG 0.359995 8_3:-48209292 None:intergenic
GGTGGTTGGGGTGTTGATAG+TGG 0.363276 8_3:-48207627 None:intergenic
GGGGTGTTGATAGTGGTTGT+GGG 0.367850 8_3:-48207620 None:intergenic
GTGATTGTGTTGGTGGTGAT+TGG 0.368121 8_3:-48207104 None:intergenic
CATGGTTGTGGTTGTGGTAG+TGG 0.373176 8_3:-48207669 None:intergenic
GGATGTGGAGACCCTTTAAT+GGG 0.385486 8_3:-48208197 None:intergenic
ATAAGATTTCAGAAGATTCA+TGG 0.386059 8_3:+48208150 Msa1292160:CDS
GTAAAGCTGTAGAACTGGTT+TGG 0.393862 8_3:-48207913 None:intergenic
CTCATAGTTATTCATGGTTG+TGG 0.413400 8_3:-48207681 None:intergenic
GGCAGTGGTAATGGTGGTTG+GGG 0.416097 8_3:-48207639 None:intergenic
TTGAGCAACATCCAGCTTCT+CGG 0.416229 8_3:-48209363 None:intergenic
TATCAGTGGTGATGTGATTA+GGG 0.416997 8_3:-48207391 None:intergenic
GTTATTCATGGTTGTGGTTG+TGG 0.422052 8_3:-48207675 None:intergenic
TCTAATGGATGGTTGAGTTC+AGG 0.423106 8_3:-48207842 None:intergenic
GTTGTTGTTCAACGAGCATT+GGG 0.426159 8_3:-48207742 None:intergenic
TTGCTCAAACGTTAGAAACT+TGG 0.430903 8_3:+48209378 Msa1292160:CDS
CTTCTTGTGGTTCTAATGGA+TGG 0.433978 8_3:-48207853 None:intergenic
TCTAGTTCGATGAAGTCATT+TGG 0.435609 8_3:-48207224 None:intergenic
TCTCATGGAAAATGATGATT+GGG 0.436690 8_3:+48206998 None:intergenic
TGCTGCAACATTACCACATT+AGG 0.438405 8_3:-48209406 None:intergenic
ACTTATGAAGTGACATATAT+AGG 0.438664 8_3:+48209250 Msa1292160:CDS
ATGGCAGTGGTAATGGTGGT+TGG 0.442080 8_3:-48207641 None:intergenic
TGAATTTGATGACATATTCT+GGG 0.443651 8_3:-48209326 None:intergenic
ATTCAGTAAAGCTGTAGAAC+TGG 0.445259 8_3:-48207918 None:intergenic
GTTATTTGTGATTGTGTTGG+TGG 0.447385 8_3:-48207111 None:intergenic
TTAAATGGTGTCCGAGAAGC+TGG 0.448705 8_3:+48209352 Msa1292160:CDS
TGTTGTTGTTCAACGAGCAT+TGG 0.450106 8_3:-48207743 None:intergenic
GGTAGGAATGGCAGTGGTAA+TGG 0.458294 8_3:-48207648 None:intergenic
GGTCAACGAGGTGGGGATAG+TGG 0.460565 8_3:-48207330 None:intergenic
GTTGGGATATCGCTTGTAGT+AGG 0.465743 8_3:-48207290 None:intergenic
ATAGTGGTGGTAGTGATTAA+GGG 0.468017 8_3:-48207314 None:intergenic
TGGCGTTGCAGTTTCACAAA+AGG 0.481002 8_3:-48207075 None:intergenic
GGTGGTGATAATTGTGGTAT+TGG 0.482351 8_3:-48207351 None:intergenic
TTGTGTTGGTGGTGATTGGT+AGG 0.483271 8_3:-48207100 None:intergenic
GGAGTAGTGATAGTGGAGAT+CGG 0.486295 8_3:-48207560 None:intergenic
TTGGTGGTGATTGGTAGGAT+TGG 0.489952 8_3:-48207095 None:intergenic
TGAAGTCATTTGGTTTAAGT+GGG 0.492180 8_3:-48207214 None:intergenic
TGCTCAAACGTTAGAAACTT+GGG 0.493239 8_3:+48209379 Msa1292160:CDS
CTGGTTTGGGGTAGTAGAAT+CGG 0.494141 8_3:-48207899 None:intergenic
AATAATTGGAATTCCGTTGT+TGG 0.498386 8_3:+48209298 Msa1292160:CDS
ATATCGCTTGTAGTAGGGAT+AGG 0.499398 8_3:-48207284 None:intergenic
TTAGGGATGGTAATGGTCGA+GGG 0.504767 8_3:-48207374 None:intergenic
ATTAGGGATGGTAATGGTCG+AGG 0.505116 8_3:-48207375 None:intergenic
TAGTTGATTATGATTTCTCT+GGG 0.505368 8_3:-48207876 None:intergenic
AGCAAGGCTCGAGTTCTTGA+TGG 0.505440 8_3:+48209445 Msa1292160:CDS
GGAGATCGGGATAGTTGTGA+TGG 0.506503 8_3:-48207546 None:intergenic
ATCACTAACACTAGTTCTCA+TGG 0.507818 8_3:+48207416 Msa1292160:CDS
GTGGTATTGGTCAACGAGGT+GGG 0.509472 8_3:-48207338 None:intergenic
GAGTAGTGATAGTGGAGATC+GGG 0.510373 8_3:-48207559 None:intergenic
TTTCAGAAGATTCATGGAGG+TGG 0.510992 8_3:+48208156 Msa1292160:CDS
TGATTTCTCTGGGCTTCTTG+TGG 0.511380 8_3:-48207866 None:intergenic
GCAGTTTCACAAAAGGTGGC+AGG 0.519398 8_3:-48207068 None:intergenic
CGTTGCAGTTTCACAAAAGG+TGG 0.520174 8_3:-48207072 None:intergenic
GATGTTATTTGTGATTGTGT+TGG 0.523003 8_3:-48207114 None:intergenic
TATCGCTTGTAGTAGGGATA+GGG 0.527079 8_3:-48207283 None:intergenic
GGTGGTTGAAGTCTTAATGC+AGG 0.527973 8_3:-48207810 None:intergenic
TGTTGTTGTTCAATGAGTGT+TGG 0.532167 8_3:-48207470 None:intergenic
AAATAATAACCAAGTGACAT+TGG 0.536349 8_3:+48208109 Msa1292160:CDS
CATAGCTCACCAATGTCACT+TGG 0.536490 8_3:-48208118 None:intergenic
GGGTGTTGATAGTGGTTGTG+GGG 0.538558 8_3:-48207619 None:intergenic
TCTAACTCAGTGAACTCACT+TGG 0.548044 8_3:-48207500 None:intergenic
GAGCATTGGGAAATTAGAAA+CGG 0.548826 8_3:-48207729 None:intergenic
AGGGATGGTAATGGTCGAGG+GGG 0.552249 8_3:-48207372 None:intergenic
TTGGGATATCGCTTGTAGTA+GGG 0.553531 8_3:-48207289 None:intergenic
AAACTTGGGTTCTCCTAATG+TGG 0.561663 8_3:+48209393 Msa1292160:CDS
CACAACCATGAATAACTATG+AGG 0.567159 8_3:+48207682 Msa1292160:CDS
GGTTGTGGTAGTGGTAGGAA+TGG 0.567738 8_3:-48207660 None:intergenic
GTTGTGGTTGTGGTAGTGGT+AGG 0.570383 8_3:-48207665 None:intergenic
ATTGGGAAATTAGAAACGGT+TGG 0.576290 8_3:-48207725 None:intergenic
AGGAATGGCAGTGGTAATGG+TGG 0.581024 8_3:-48207645 None:intergenic
TTAAAGGGTCTCCACATCCA+AGG 0.584498 8_3:+48208201 Msa1292160:CDS
GGGGTTGGGAGTAGTGATAG+TGG 0.586245 8_3:-48207567 None:intergenic
GAGTTCAGGATGAAAATTGG+TGG 0.596987 8_3:-48207828 None:intergenic
GAGATCGGGATAGTTGTGAT+GGG 0.597238 8_3:-48207545 None:intergenic
GGTGTTGATAGTGGTTGTGG+GGG 0.603398 8_3:-48207618 None:intergenic
CAACGAGGTGGGGATAGTGG+TGG 0.618355 8_3:-48207327 None:intergenic
GAAGTCATTTGGTTTAAGTG+GGG 0.620194 8_3:-48207213 None:intergenic
AATATGACGTGGTGTTGTGA+GGG 0.620814 8_3:-48207142 None:intergenic
CAATATGACGTGGTGTTGTG+AGG 0.624759 8_3:-48207143 None:intergenic
ATGAGAACTAGTGTTAGTGA+TGG 0.631276 8_3:-48207414 None:intergenic
TGTGGTATTGGTCAACGAGG+TGG 0.633309 8_3:-48207339 None:intergenic
TAGGGATGGTAATGGTCGAG+GGG 0.634650 8_3:-48207373 None:intergenic
TGGTATTGGTCAACGAGGTG+GGG 0.652088 8_3:-48207337 None:intergenic
ATTCTGGGAGCTACCAACAA+CGG 0.652456 8_3:-48209311 None:intergenic
GATGTGATTAGGGATGGTAA+TGG 0.654053 8_3:-48207381 None:intergenic
AGTGGTGATGTGATTAGGGA+TGG 0.659025 8_3:-48207387 None:intergenic
TAGTGGTGGTAGTGATTAAG+GGG 0.668339 8_3:-48207313 None:intergenic
AAAGCTGTAGAACTGGTTTG+GGG 0.677184 8_3:-48207911 None:intergenic
TGATCATCCAAAGAGCAGCA+AGG 0.678225 8_3:+48209429 Msa1292160:CDS
ATCATCAAAGCAATATGACG+TGG 0.680013 8_3:-48207153 None:intergenic
AGTGTTAGTGATGGTATCAG+TGG 0.685752 8_3:-48207405 None:intergenic
GGTAGTGGTAGGAATGGCAG+TGG 0.700162 8_3:-48207654 None:intergenic
GACATTGGTGAGCTATGTGA+AGG 0.706817 8_3:+48208124 Msa1292160:CDS
ATATGACGTGGTGTTGTGAG+GGG 0.714347 8_3:-48207141 None:intergenic
GGTGGCAGGAGCATTATAGG+TGG 0.729547 8_3:-48207054 None:intergenic
AGTGGTGGTAGTGATTAAGG+GGG 0.739122 8_3:-48207312 None:intergenic
AGATTTCAGAAGATTCATGG+AGG 0.754498 8_3:+48208153 Msa1292160:CDS
AATTGTGGTATTGGTCAACG+AGG 0.817467 8_3:-48207342 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAAAATTATATATTTTT+AGG + chr8_3:48208884-48208903 Msa1292160:intron 0.0%
!!! TAAAAAATTATATATTTTTA+GGG + chr8_3:48208885-48208904 Msa1292160:intron 0.0%
!!! CAAAATATTTTTTTTTACAA+AGG + chr8_3:48208483-48208502 Msa1292160:intron 10.0%
!! AGGGTTAAAATTAATATTAA+AGG - chr8_3:48208736-48208755 None:intergenic 15.0%
!!! CAATATGAATAAATTTTGTA+GGG + chr8_3:48208784-48208803 Msa1292160:intron 15.0%
!! AAAAAATGATGTAAATGTAA+GGG - chr8_3:48208999-48209018 None:intergenic 15.0%
!! TAAAAAATGATGTAAATGTA+AGG - chr8_3:48209000-48209019 None:intergenic 15.0%
!!! GGTTTAAATTTTTGTTGTTT+CGG - chr8_3:48207950-48207969 None:intergenic 20.0%
!! AAACAACAAAAATTTAAACC+AGG + chr8_3:48207950-48207969 Msa1292160:CDS 20.0%
!! AAAAATTTAAACCAGGAAAA+AGG + chr8_3:48207957-48207976 Msa1292160:CDS 20.0%
!!! TTTTTTCTACAAGAAAAGAA+GGG - chr8_3:48208092-48208111 None:intergenic 20.0%
!!! ATTTTTTCTACAAGAAAAGA+AGG - chr8_3:48208093-48208112 None:intergenic 20.0%
!! TTTGAATGAATAAAAAACCT+TGG - chr8_3:48208221-48208240 None:intergenic 20.0%
!! TTAGTTAAATGTGACAAATA+TGG + chr8_3:48208377-48208396 Msa1292160:intron 20.0%
!! TCAAAAACAAAAAATCAAAG+AGG - chr8_3:48208630-48208649 None:intergenic 20.0%
!!! AATTTTAACCCTTATATTGA+TGG + chr8_3:48208744-48208763 Msa1292160:intron 20.0%
!!! ATTTTAACCCTTATATTGAT+GGG + chr8_3:48208745-48208764 Msa1292160:intron 20.0%
!!! ATTTTAACCCATCAATATAA+GGG - chr8_3:48208755-48208774 None:intergenic 20.0%
!! CCTACAAAATTTATTCATAT+TGG - chr8_3:48208786-48208805 None:intergenic 20.0%
!!! CCAATATGAATAAATTTTGT+AGG + chr8_3:48208783-48208802 Msa1292160:intron 20.0%
!! AAAAATGATGTAAATGTAAG+GGG - chr8_3:48208998-48209017 None:intergenic 20.0%
!! TCATATAGACACATATAAAT+AGG - chr8_3:48209086-48209105 None:intergenic 20.0%
! TAGTTGATTATGATTTCTCT+GGG - chr8_3:48207879-48207898 None:intergenic 25.0%
!! AAGAAGGGTAAGATAATTTT+CGG - chr8_3:48208077-48208096 None:intergenic 25.0%
! AAATAATAACCAAGTGACAT+TGG + chr8_3:48208109-48208128 Msa1292160:CDS 25.0%
! ATAAGATTTCAGAAGATTCA+TGG + chr8_3:48208150-48208169 Msa1292160:CDS 25.0%
!!! CTATTTAAAACCATTGGTTT+GGG - chr8_3:48208318-48208337 None:intergenic 25.0%
!! ACTATTTAAAACCATTGGTT+TGG - chr8_3:48208319-48208338 None:intergenic 25.0%
! CAACAAATGATACATATACA+AGG - chr8_3:48208573-48208592 None:intergenic 25.0%
!!! GATTTTAACCCATCAATATA+AGG - chr8_3:48208756-48208775 None:intergenic 25.0%
! CAAACACTGAAATAAAAATG+TGG + chr8_3:48208821-48208840 Msa1292160:intron 25.0%
! TTGTTTAGCAAAAAAACTAG+TGG + chr8_3:48209204-48209223 Msa1292160:CDS 25.0%
! ACTTATGAAGTGACATATAT+AGG + chr8_3:48209250-48209269 Msa1292160:CDS 25.0%
! ACAAAAAACCAGCAAATAAT+TGG + chr8_3:48209284-48209303 Msa1292160:CDS 25.0%
!! TGAATTTGATGACATATTCT+GGG - chr8_3:48209329-48209348 None:intergenic 25.0%
! TCATCAAATTCAGGATTAAA+TGG + chr8_3:48209337-48209356 Msa1292160:CDS 25.0%
! GATGTTATTTGTGATTGTGT+TGG - chr8_3:48207117-48207136 None:intergenic 30.0%
! TGAAGTCATTTGGTTTAAGT+GGG - chr8_3:48207217-48207236 None:intergenic 30.0%
! ATGAAGTCATTTGGTTTAAG+TGG - chr8_3:48207218-48207237 None:intergenic 30.0%
! TAGTTGTGATGGGATTAAAT+TGG - chr8_3:48207538-48207557 None:intergenic 30.0%
ATTTGCCTCATAGTTATTCA+TGG - chr8_3:48207690-48207709 None:intergenic 30.0%
GTAGTTGATTATGATTTCTC+TGG - chr8_3:48207880-48207899 None:intergenic 30.0%
! TCAATTCTTTACCTTTTTCC+TGG - chr8_3:48207971-48207990 None:intergenic 30.0%
TATGGACAAAAACCCATTAA+AGG + chr8_3:48208185-48208204 Msa1292160:CDS 30.0%
ATGGACAAAAACCCATTAAA+GGG + chr8_3:48208186-48208205 Msa1292160:CDS 30.0%
TGAATAAAAAACCTTGGATG+TGG - chr8_3:48208215-48208234 None:intergenic 30.0%
! TGGTCACTATTTAAAACCAT+TGG - chr8_3:48208324-48208343 None:intergenic 30.0%
AAGAATGATCAAAATGCATG+TGG - chr8_3:48208344-48208363 None:intergenic 30.0%
ACCAAGCATTAAAGAACAAA+GGG - chr8_3:48208669-48208688 None:intergenic 30.0%
TACCAAGCATTAAAGAACAA+AGG - chr8_3:48208670-48208689 None:intergenic 30.0%
TGTAAATGTAAGGGGAAAAT+AGG - chr8_3:48208990-48209009 None:intergenic 30.0%
CTAGTGGAGAAAATAAAAAC+TGG + chr8_3:48209220-48209239 Msa1292160:CDS 30.0%
AATAATTGGAATTCCGTTGT+TGG + chr8_3:48209298-48209317 Msa1292160:CDS 30.0%
! CTGAATTTGATGACATATTC+TGG - chr8_3:48209330-48209349 None:intergenic 30.0%
CAGAATATGTCATCAAATTC+AGG + chr8_3:48209328-48209347 Msa1292160:CDS 30.0%
GTTATTTGTGATTGTGTTGG+TGG - chr8_3:48207114-48207133 None:intergenic 35.0%
ATCATCAAAGCAATATGACG+TGG - chr8_3:48207156-48207175 None:intergenic 35.0%
!!! TGGGATTGTGCTATTTTCTT+GGG - chr8_3:48207189-48207208 None:intergenic 35.0%
!!! TTGGGATTGTGCTATTTTCT+TGG - chr8_3:48207190-48207209 None:intergenic 35.0%
TTGGTTTAAGTGGGGATATT+GGG - chr8_3:48207208-48207227 None:intergenic 35.0%
! TTTGGTTTAAGTGGGGATAT+TGG - chr8_3:48207209-48207228 None:intergenic 35.0%
! GAAGTCATTTGGTTTAAGTG+GGG - chr8_3:48207216-48207235 None:intergenic 35.0%
! TCTAGTTCGATGAAGTCATT+TGG - chr8_3:48207227-48207246 None:intergenic 35.0%
! AGGGATAATTTTTGTGGGAT+TGG - chr8_3:48207267-48207286 None:intergenic 35.0%
! GGGATAGGGATAATTTTTGT+GGG - chr8_3:48207272-48207291 None:intergenic 35.0%
! AGGGATAGGGATAATTTTTG+TGG - chr8_3:48207273-48207292 None:intergenic 35.0%
! ATAGTGGTGGTAGTGATTAA+GGG - chr8_3:48207317-48207336 None:intergenic 35.0%
! TATCAGTGGTGATGTGATTA+GGG - chr8_3:48207394-48207413 None:intergenic 35.0%
ATGAGAACTAGTGTTAGTGA+TGG - chr8_3:48207417-48207436 None:intergenic 35.0%
! ATCACTAACACTAGTTCTCA+TGG + chr8_3:48207416-48207435 Msa1292160:CDS 35.0%
! TGTTGTTGTTCAATGAGTGT+TGG - chr8_3:48207473-48207492 None:intergenic 35.0%
CTCATAGTTATTCATGGTTG+TGG - chr8_3:48207684-48207703 None:intergenic 35.0%
CACAACCATGAATAACTATG+AGG + chr8_3:48207682-48207701 Msa1292160:CDS 35.0%
ATTGGGAAATTAGAAACGGT+TGG - chr8_3:48207728-48207747 None:intergenic 35.0%
!! GAGCATTGGGAAATTAGAAA+CGG - chr8_3:48207732-48207751 None:intergenic 35.0%
GTTGAGTTCAGGATGAAAAT+TGG - chr8_3:48207834-48207853 None:intergenic 35.0%
! TAAAGCTGTAGAACTGGTTT+GGG - chr8_3:48207915-48207934 None:intergenic 35.0%
ATTCAGTAAAGCTGTAGAAC+TGG - chr8_3:48207921-48207940 None:intergenic 35.0%
AGATTTCAGAAGATTCATGG+AGG + chr8_3:48208153-48208172 Msa1292160:CDS 35.0%
! GACAAATATGGTCTTGATAG+TGG + chr8_3:48208389-48208408 Msa1292160:intron 35.0%
ACTCTCATTGAAATGATGAG+AGG - chr8_3:48208455-48208474 None:intergenic 35.0%
CAAGCATTAAAGAACAAAGG+GGG - chr8_3:48208667-48208686 None:intergenic 35.0%
CCAAGCATTAAAGAACAAAG+GGG - chr8_3:48208668-48208687 None:intergenic 35.0%
ATGTATTATTTCACGTGTCG+TGG + chr8_3:48209022-48209041 Msa1292160:intron 35.0%
TGTATTATTTCACGTGTCGT+GGG + chr8_3:48209023-48209042 Msa1292160:intron 35.0%
CAATCAATGAATGACTTTGC+AGG + chr8_3:48209152-48209171 Msa1292160:intron 35.0%
GGAGAAAATAAAAACTGGAG+AGG + chr8_3:48209225-48209244 Msa1292160:CDS 35.0%
ACGGAATTCCAATTATTTGC+TGG - chr8_3:48209295-48209314 None:intergenic 35.0%
TTGCTCAAACGTTAGAAACT+TGG + chr8_3:48209378-48209397 Msa1292160:CDS 35.0%
TGCTCAAACGTTAGAAACTT+GGG + chr8_3:48209379-48209398 Msa1292160:CDS 35.0%
!! AATATGACGTGGTGTTGTGA+GGG - chr8_3:48207145-48207164 None:intergenic 40.0%
TATCGCTTGTAGTAGGGATA+GGG - chr8_3:48207286-48207305 None:intergenic 40.0%
ATATCGCTTGTAGTAGGGAT+AGG - chr8_3:48207287-48207306 None:intergenic 40.0%
TTGGGATATCGCTTGTAGTA+GGG - chr8_3:48207292-48207311 None:intergenic 40.0%
! TAGTGGTGGTAGTGATTAAG+GGG - chr8_3:48207316-48207335 None:intergenic 40.0%
! GATAGTGGTGGTAGTGATTA+AGG - chr8_3:48207318-48207337 None:intergenic 40.0%
!! AATTGTGGTATTGGTCAACG+AGG - chr8_3:48207345-48207364 None:intergenic 40.0%
GGTGGTGATAATTGTGGTAT+TGG - chr8_3:48207354-48207373 None:intergenic 40.0%
GATGTGATTAGGGATGGTAA+TGG - chr8_3:48207384-48207403 None:intergenic 40.0%
! GTATCAGTGGTGATGTGATT+AGG - chr8_3:48207395-48207414 None:intergenic 40.0%
AGTGTTAGTGATGGTATCAG+TGG - chr8_3:48207408-48207427 None:intergenic 40.0%
TCTAACTCAGTGAACTCACT+TGG - chr8_3:48207503-48207522 None:intergenic 40.0%
GTTATTCATGGTTGTGGTTG+TGG - chr8_3:48207678-48207697 None:intergenic 40.0%
! GTTGTTGTTCAACGAGCATT+GGG - chr8_3:48207745-48207764 None:intergenic 40.0%
! TGTTGTTGTTCAACGAGCAT+TGG - chr8_3:48207746-48207765 None:intergenic 40.0%
! CGAAAACAGACACTCGATTT+TGG - chr8_3:48207781-48207800 None:intergenic 40.0%
GAGTTCAGGATGAAAATTGG+TGG - chr8_3:48207831-48207850 None:intergenic 40.0%
! TCTAATGGATGGTTGAGTTC+AGG - chr8_3:48207845-48207864 None:intergenic 40.0%
!! CTTCTTGTGGTTCTAATGGA+TGG - chr8_3:48207856-48207875 None:intergenic 40.0%
!! AAAGCTGTAGAACTGGTTTG+GGG - chr8_3:48207914-48207933 None:intergenic 40.0%
GTAAAGCTGTAGAACTGGTT+TGG - chr8_3:48207916-48207935 None:intergenic 40.0%
TTTCAGAAGATTCATGGAGG+TGG + chr8_3:48208156-48208175 Msa1292160:CDS 40.0%
TCATGGAGGTGGAGAAAATA+TGG + chr8_3:48208167-48208186 Msa1292160:CDS 40.0%
!! AAAACCATTGGTTTGGGTGT+GGG - chr8_3:48208312-48208331 None:intergenic 40.0%
!! TAAAACCATTGGTTTGGGTG+TGG - chr8_3:48208313-48208332 None:intergenic 40.0%
CCCCTTTGTTCTTTAATGCT+TGG + chr8_3:48208665-48208684 Msa1292160:intron 40.0%
AAACTTGGGTTCTCCTAATG+TGG + chr8_3:48209393-48209412 Msa1292160:CDS 40.0%
TGCTGCAACATTACCACATT+AGG - chr8_3:48209409-48209428 None:intergenic 40.0%
!! AAAGGTGGCAGGAGCATTAT+AGG - chr8_3:48207060-48207079 None:intergenic 45.0%
CGTTGCAGTTTCACAAAAGG+TGG - chr8_3:48207075-48207094 None:intergenic 45.0%
TGGCGTTGCAGTTTCACAAA+AGG - chr8_3:48207078-48207097 None:intergenic 45.0%
!! TTGGTGGTGATTGGTAGGAT+TGG - chr8_3:48207098-48207117 None:intergenic 45.0%
!! TTGTGTTGGTGGTGATTGGT+AGG - chr8_3:48207103-48207122 None:intergenic 45.0%
!! GTGATTGTGTTGGTGGTGAT+TGG - chr8_3:48207107-48207126 None:intergenic 45.0%
!! ATATGACGTGGTGTTGTGAG+GGG - chr8_3:48207144-48207163 None:intergenic 45.0%
!! CAATATGACGTGGTGTTGTG+AGG - chr8_3:48207146-48207165 None:intergenic 45.0%
GTTGGGATATCGCTTGTAGT+AGG - chr8_3:48207293-48207312 None:intergenic 45.0%
! TGGTAGTGATTAAGGGGGTT+GGG - chr8_3:48207310-48207329 None:intergenic 45.0%
! AGTGGTGGTAGTGATTAAGG+GGG - chr8_3:48207315-48207334 None:intergenic 45.0%
!! TTAGGGATGGTAATGGTCGA+GGG - chr8_3:48207377-48207396 None:intergenic 45.0%
!! ATTAGGGATGGTAATGGTCG+AGG - chr8_3:48207378-48207397 None:intergenic 45.0%
! AGTGGTGATGTGATTAGGGA+TGG - chr8_3:48207390-48207409 None:intergenic 45.0%
GAGATCGGGATAGTTGTGAT+GGG - chr8_3:48207548-48207567 None:intergenic 45.0%
!! GAGTAGTGATAGTGGAGATC+GGG - chr8_3:48207562-48207581 None:intergenic 45.0%
!! GGAGTAGTGATAGTGGAGAT+CGG - chr8_3:48207563-48207582 None:intergenic 45.0%
GGTGGTTGAAGTCTTAATGC+AGG - chr8_3:48207813-48207832 None:intergenic 45.0%
!! TGGGCTTCTTGTGGTTCTAA+TGG - chr8_3:48207860-48207879 None:intergenic 45.0%
TGATTTCTCTGGGCTTCTTG+TGG - chr8_3:48207869-48207888 None:intergenic 45.0%
!! CTGGTTTGGGGTAGTAGAAT+CGG - chr8_3:48207902-48207921 None:intergenic 45.0%
CATAGCTCACCAATGTCACT+TGG - chr8_3:48208121-48208140 None:intergenic 45.0%
GACATTGGTGAGCTATGTGA+AGG + chr8_3:48208124-48208143 Msa1292160:CDS 45.0%
GGATGTGGAGACCCTTTAAT+GGG - chr8_3:48208200-48208219 None:intergenic 45.0%
TGGATGTGGAGACCCTTTAA+TGG - chr8_3:48208201-48208220 None:intergenic 45.0%
TTAAAGGGTCTCCACATCCA+AGG + chr8_3:48208201-48208220 Msa1292160:CDS 45.0%
TTATTTCACGTGTCGTGGGA+CGG + chr8_3:48209027-48209046 Msa1292160:intron 45.0%
! ATTCTGGGAGCTACCAACAA+CGG - chr8_3:48209314-48209333 None:intergenic 45.0%
TTAAATGGTGTCCGAGAAGC+TGG + chr8_3:48209352-48209371 Msa1292160:CDS 45.0%
TTGAGCAACATCCAGCTTCT+CGG - chr8_3:48209366-48209385 None:intergenic 45.0%
TGATCATCCAAAGAGCAGCA+AGG + chr8_3:48209429-48209448 Msa1292160:CDS 45.0%
!! TATAAAATATATTAAATAGT+AGG - chr8_3:48207996-48208015 None:intergenic 5.0%
!!! ATTTTGTTTTATATTAAAAT+TGG + chr8_3:48208708-48208727 Msa1292160:intron 5.0%
GCAGTTTCACAAAAGGTGGC+AGG - chr8_3:48207071-48207090 None:intergenic 50.0%
! GTGGTAGTGATTAAGGGGGT+TGG - chr8_3:48207311-48207330 None:intergenic 50.0%
!! TGGTATTGGTCAACGAGGTG+GGG - chr8_3:48207340-48207359 None:intergenic 50.0%
!! GTGGTATTGGTCAACGAGGT+GGG - chr8_3:48207341-48207360 None:intergenic 50.0%
!! TGTGGTATTGGTCAACGAGG+TGG - chr8_3:48207342-48207361 None:intergenic 50.0%
!! TAGGGATGGTAATGGTCGAG+GGG - chr8_3:48207376-48207395 None:intergenic 50.0%
GGAGATCGGGATAGTTGTGA+TGG - chr8_3:48207549-48207568 None:intergenic 50.0%
!! GGTGTTGATAGTGGTTGTGG+GGG - chr8_3:48207621-48207640 None:intergenic 50.0%
!! GGGTGTTGATAGTGGTTGTG+GGG - chr8_3:48207622-48207641 None:intergenic 50.0%
!! GGGGTGTTGATAGTGGTTGT+GGG - chr8_3:48207623-48207642 None:intergenic 50.0%
!! TGGGGTGTTGATAGTGGTTG+TGG - chr8_3:48207624-48207643 None:intergenic 50.0%
!! TGGCAGTGGTAATGGTGGTT+GGG - chr8_3:48207643-48207662 None:intergenic 50.0%
!! ATGGCAGTGGTAATGGTGGT+TGG - chr8_3:48207644-48207663 None:intergenic 50.0%
!! AGGAATGGCAGTGGTAATGG+TGG - chr8_3:48207648-48207667 None:intergenic 50.0%
GGTAGGAATGGCAGTGGTAA+TGG - chr8_3:48207651-48207670 None:intergenic 50.0%
!! GGTTGTGGTAGTGGTAGGAA+TGG - chr8_3:48207663-48207682 None:intergenic 50.0%
!! GTTGTGGTTGTGGTAGTGGT+AGG - chr8_3:48207668-48207687 None:intergenic 50.0%
CATGGTTGTGGTTGTGGTAG+TGG - chr8_3:48207672-48207691 None:intergenic 50.0%
TGGGTGTGGGTGTGTGTATT+AGG - chr8_3:48208299-48208318 None:intergenic 50.0%
AGCAAGGCTCGAGTTCTTGA+TGG + chr8_3:48209445-48209464 Msa1292160:CDS 50.0%
!! GGTGGCAGGAGCATTATAGG+TGG - chr8_3:48207057-48207076 None:intergenic 55.0%
CGAGGGGGTGGTGATAATTG+TGG - chr8_3:48207360-48207379 None:intergenic 55.0%
!! AGGGATGGTAATGGTCGAGG+GGG - chr8_3:48207375-48207394 None:intergenic 55.0%
GGGGTTGGGAGTAGTGATAG+TGG - chr8_3:48207570-48207589 None:intergenic 55.0%
!! TGATGGGGGTACTGGTACTG+GGG - chr8_3:48207589-48207608 None:intergenic 55.0%
!! GTGATGGGGGTACTGGTACT+GGG - chr8_3:48207590-48207609 None:intergenic 55.0%
!! AGTGAAGGTGATGGGGGTAC+TGG - chr8_3:48207597-48207616 None:intergenic 55.0%
TGGGGGTAGTGAAGGTGATG+GGG - chr8_3:48207604-48207623 None:intergenic 55.0%
GTGGGGGTAGTGAAGGTGAT+GGG - chr8_3:48207605-48207624 None:intergenic 55.0%
TGTGGGGGTAGTGAAGGTGA+TGG - chr8_3:48207606-48207625 None:intergenic 55.0%
AGTGGTTGTGGGGGTAGTGA+AGG - chr8_3:48207612-48207631 None:intergenic 55.0%
!! GGTGGTTGGGGTGTTGATAG+TGG - chr8_3:48207630-48207649 None:intergenic 55.0%
!! GGCAGTGGTAATGGTGGTTG+GGG - chr8_3:48207642-48207661 None:intergenic 55.0%
! GGTAGTGGTAGGAATGGCAG+TGG - chr8_3:48207657-48207676 None:intergenic 55.0%
CACACCCACACCCAAACCAA+TGG + chr8_3:48208305-48208324 Msa1292160:intron 55.0%
ACTCGAGCCTTGCTGCTCTT+TGG - chr8_3:48209439-48209458 None:intergenic 55.0%
! CAACGAGGTGGGGATAGTGG+TGG - chr8_3:48207330-48207349 None:intergenic 60.0%
GGTCAACGAGGTGGGGATAG+TGG - chr8_3:48207333-48207352 None:intergenic 60.0%
!! GATGGTAATGGTCGAGGGGG+TGG - chr8_3:48207372-48207391 None:intergenic 60.0%
!! GGGGTACTGGTACTGGGGTT+GGG - chr8_3:48207584-48207603 None:intergenic 60.0%
!! GGTGATGGGGGTACTGGTAC+TGG - chr8_3:48207591-48207610 None:intergenic 60.0%
! GGGGGTAGTGAAGGTGATGG+GGG - chr8_3:48207603-48207622 None:intergenic 60.0%
!! GGGGGTACTGGTACTGGGGT+TGG - chr8_3:48207585-48207604 None:intergenic 65.0%
CACGTGTCGTGGGACGGAGT+CGG + chr8_3:48209033-48209052 Msa1292160:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 48207002 48209474 48207002 ID=Msa1292160;Name=Msa1292160
chr8_3 mRNA 48207002 48209474 48207002 ID=Msa1292160-mRNA-1;Parent=Msa1292160;Name=Msa1292160-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|1|1|3|0|464
chr8_3 exon 48207002 48207978 48207002 ID=Msa1292160-mRNA-1:exon:13345;Parent=Msa1292160-mRNA-1
chr8_3 exon 48208106 48208222 48208106 ID=Msa1292160-mRNA-1:exon:13346;Parent=Msa1292160-mRNA-1
chr8_3 exon 48209174 48209474 48209174 ID=Msa1292160-mRNA-1:exon:13347;Parent=Msa1292160-mRNA-1
chr8_3 CDS 48207002 48207978 48207002 ID=Msa1292160-mRNA-1:cds;Parent=Msa1292160-mRNA-1
chr8_3 CDS 48208106 48208222 48208106 ID=Msa1292160-mRNA-1:cds;Parent=Msa1292160-mRNA-1
chr8_3 CDS 48209174 48209474 48209174 ID=Msa1292160-mRNA-1:cds;Parent=Msa1292160-mRNA-1
Gene Sequence

>Msa1292160

ATGGAAAATGATGATTGGGATCTCTTTTCTATTGTGCGTAGCTGCAAAGCTACCACCTATAATGCTCCTGCCACCTTTTGTGAAACTGCAACGCCAATCCTACCAATCACCACCAACACAATCACAAATAACATCACATCCCCTCACAACACCACGTCATATTGCTTTGATGATTTTACACTTACCCAAGAAAATAGCACAATCCCAATATCCCCACTTAAACCAAATGACTTCATCGAACTAGACAAATTGATCATTTGTTCCAATCCCACAAAAATTATCCCTATCCCTACTACAAGCGATATCCCAACCCCCTTAATCACTACCACCACTATCCCCACCTCGTTGACCAATACCACAATTATCACCACCCCCTCGACCATTACCATCCCTAATCACATCACCACTGATACCATCACTAACACTAGTTCTCATGGATCAGATCAAAATTCTACATTTTTTTATTTTCCAACACTCATTGAACAACAACAGATGCAACCAAGTGAGTTCACTGAGTTAGAAAAATGTATACTCCAATTTAATCCCATCACAACTATCCCGATCTCCACTATCACTACTCCCAACCCCAGTACCAGTACCCCCATCACCTTCACTACCCCCACAACCACTATCAACACCCCAACCACCATTACCACTGCCATTCCTACCACTACCACAACCACAACCATGAATAACTATGAGGCAAATAGAATCAATAAATGTCCAACCGTTTCTAATTTCCCAATGCTCGTTGAACAACAACATGTTCAAGCAAACCAAAATCGAGTGTCTGTTTTCGACTCTATTTCCTGCATTAAGACTTCAACCACCAATTTTCATCCTGAACTCAACCATCCATTAGAACCACAAGAAGCCCAGAGAAATCATAATCAACTACCGATTCTACTACCCCAAACCAGTTCTACAGCTTTACTGAATACAAAACCGAAACAACAAAAATTTAAACCAGGAAAAAGAAAAAATAATAACCAAGTGACATTGGTGAGCTATGTGAAGGCAGATAAGATTTCAGAAGATTCATGGAGGTGGAGAAAATATGGACAAAAACCCATTAAAGGGTCTCCACATCCAAGGAGCTACTTCAAATGTAGCAGTTTCAACGATTGTTTAGCAAAAAAACTAGTGGAGAAAATAAAAACTGGAGAGGACACTTATGAAGTGACATATATAGGAGAACACAATCACAAAAAACCAGCAAATAATTGGAATTCCGTTGTTGGTAGCTCCCAGAATATGTCATCAAATTCAGGATTAAATGGTGTCCGAGAAGCTGGATGTTGCTCAAACGTTAGAAACTTGGGTTCTCCTAATGTGGTAATGTTGCAGCATGATCATCCAAAGAGCAGCAAGGCTCGAGTTCTTGATGGTGAATAA
Protein sequence

>Msa1292160

MENDDWDLFSIVRSCKATTYNAPATFCETATPILPITTNTITNNITSPHNTTSYCFDDFTLTQENSTIPISPLKPNDFIELDKLIICSNPTKIIPIPTTSDIPTPLITTTTIPTSLTNTTIITTPSTITIPNHITTDTITNTSSHGSDQNSTFFYFPTLIEQQQMQPSEFTELEKCILQFNPITTIPISTITTPNPSTSTPITFTTPTTTINTPTTITTAIPTTTTTTTMNNYEANRINKCPTVSNFPMLVEQQHVQANQNRVSVFDSISCIKTSTTNFHPELNHPLEPQEAQRNHNQLPILLPQTSSTALLNTKPKQQKFKPGKRKNNNQVTLVSYVKADKISEDSWRWRKYGQKPIKGSPHPRSYFKCSSFNDCLAKKLVEKIKTGEDTYEVTYIGEHNHKKPANNWNSVVGSSQNMSSNSGLNGVREAGCCSNVRNLGSPNVVMLQHDHPKSSKARVLDGE*