AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1292650

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1292650 MtrunA17_Chr2g0289181 43.966 232 117 2 84 302 1 232 6.69e-56 181
Msa1292650 MtrunA17_Chr1g0202461 56.000 100 42 2 74 173 239 336 5.44e-29 114
Msa1292650 MtrunA17_Chr8g0348311 52.830 106 47 2 87 190 145 249 4.75e-27 108
Msa1292650 MtrunA17_Chr7g0248691 46.875 128 51 3 42 169 115 225 3.45e-24 100
Msa1292650 MtrunA17_Chr8g0387501 58.750 80 32 1 90 169 122 200 2.33e-23 97.1
Msa1292650 MtrunA17_Chr6g0470151 42.241 116 66 1 5 120 239 353 1.05e-20 91.3
Msa1292650 MtrunA17_Chr2g0284321 37.143 140 70 2 74 195 12 151 2.70e-20 87.4
Msa1292650 MtrunA17_Chr7g0266611 36.486 148 82 2 152 287 2 149 8.45e-20 84.7
Msa1292650 MtrunA17_Chr2g0293481 53.846 78 35 1 92 169 262 338 1.65e-19 88.6
Msa1292650 MtrunA17_Chr4g0053281 55.263 76 33 1 83 158 253 327 9.76e-19 85.1
Msa1292650 MtrunA17_Chr7g0249311 50.000 86 41 2 87 172 169 252 1.07e-18 86.7
Msa1292650 MtrunA17_Chr7g0249311 47.297 74 38 1 95 168 390 462 5.63e-15 75.5
Msa1292650 MtrunA17_Chr5g0401821 55.556 72 31 1 83 154 186 256 1.10e-18 84.0
Msa1292650 MtrunA17_Chr2g0319961 63.333 60 22 0 98 157 81 140 1.12e-18 84.0
Msa1292650 MtrunA17_Chr3g0139021 51.190 84 36 2 77 156 291 373 2.05e-18 85.1
Msa1292650 MtrunA17_Chr1g0184691 62.121 66 21 1 98 159 294 359 2.10e-18 84.3
Msa1292650 MtrunA17_Chr7g0249301 48.837 86 42 2 87 172 52 135 2.80e-18 84.3
Msa1292650 MtrunA17_Chr7g0249301 51.562 64 30 1 95 158 290 352 1.20e-13 70.9
Msa1292650 MtrunA17_Chr3g0079691 51.724 87 39 3 82 168 266 349 3.72e-18 85.1
Msa1292650 MtrunA17_Chr3g0079691 46.479 71 37 1 95 165 493 562 3.86e-14 72.8
Msa1292650 MtrunA17_Chr7g0228941 48.718 78 39 1 83 160 39 115 7.86e-18 78.2
Msa1292650 MtrunA17_Chr8g0379461 51.471 68 33 0 98 165 77 144 1.46e-17 80.5
Msa1292650 MtrunA17_Chr4g0071521 49.398 83 41 1 72 154 221 302 2.44e-17 80.9
Msa1292650 MtrunA17_Chr7g0263531 43.750 96 52 2 81 176 173 266 2.52e-17 82.0
Msa1292650 MtrunA17_Chr7g0263531 40.196 102 44 3 74 160 324 423 2.60e-14 73.2
Msa1292650 MtrunA17_Chr1g0147881 44.211 95 52 1 72 166 238 331 2.68e-17 81.3
Msa1292650 MtrunA17_Chr5g0447701 33.149 181 90 9 93 269 88 241 3.94e-17 81.3
Msa1292650 MtrunA17_Chr5g0447701 41.892 74 42 1 86 159 241 313 1.78e-12 67.4
Msa1292650 MtrunA17_Chr8g0366951 43.925 107 40 2 182 288 12 98 4.19e-17 75.9
Msa1292650 MtrunA17_Chr7g0218081 40.000 100 58 2 62 161 193 290 5.51e-17 81.3
Msa1292650 MtrunA17_Chr7g0218081 46.914 81 41 2 97 176 410 489 1.20e-15 77.0
Msa1292650 MtrunA17_Chr7g0243891 52.632 76 34 2 89 164 208 281 8.99e-17 80.5
Msa1292650 MtrunA17_Chr7g0243891 46.875 64 33 1 95 158 372 434 8.96e-12 65.5
Msa1292650 MtrunA17_Chr7g0270051 48.611 72 37 0 87 158 43 114 1.31e-16 78.2
Msa1292650 MtrunA17_Chr4g0074001 42.697 89 38 2 69 157 343 418 3.38e-16 79.0
Msa1292650 MtrunA17_Chr3g0106491 47.959 98 37 5 74 164 174 264 9.78e-16 77.4
Msa1292650 MtrunA17_Chr3g0106491 46.875 64 33 1 95 158 363 425 4.75e-12 66.2
Msa1292650 MtrunA17_Chr4g0042831 50.000 68 33 1 97 164 278 344 4.25e-15 75.1
Msa1292650 MtrunA17_Chr4g0042831 44.444 81 44 1 88 168 136 215 2.82e-14 72.8
Msa1292650 MtrunA17_Chr6g0470161 48.235 85 43 1 219 302 35 119 8.04e-15 69.7
Msa1292650 MtrunA17_Chr3g0101131 43.878 98 47 3 75 166 215 310 1.31e-14 74.3
Msa1292650 MtrunA17_Chr3g0101131 44.286 70 38 1 95 164 413 481 1.63e-13 70.9
Msa1292650 MtrunA17_Chr5g0418191 47.826 69 35 1 97 165 320 387 3.42e-14 72.8
Msa1292650 MtrunA17_Chr5g0418191 47.368 76 38 2 88 163 142 215 3.39e-13 69.7
Msa1292650 MtrunA17_Chr2g0294231 47.692 65 33 1 97 161 203 266 7.91e-14 71.2
Msa1292650 MtrunA17_Chr5g0443131 49.231 65 32 1 97 161 157 220 9.18e-14 70.5
Msa1292650 MtrunA17_Chr3g0128671 41.489 94 46 3 61 152 98 184 1.04e-13 70.5
Msa1292650 MtrunA17_Chr7g0270191 35.398 113 63 3 77 189 126 228 1.40e-13 70.1
Msa1292650 MtrunA17_Chr5g0445311 46.875 64 33 1 95 158 362 424 2.16e-13 70.5
Msa1292650 MtrunA17_Chr5g0445311 51.613 62 28 2 96 157 199 258 4.73e-12 66.2
Msa1292650 MtrunA17_Chr4g0004911 48.438 64 32 1 94 157 181 243 3.51e-13 69.7
Msa1292650 MtrunA17_Chr4g0004911 47.619 63 32 1 95 157 334 395 3.32e-12 66.6
Msa1292650 MtrunA17_Chr5g0432161 51.562 64 29 2 94 157 241 302 3.54e-13 69.7
Msa1292650 MtrunA17_Chr5g0432161 48.438 64 32 1 95 158 419 481 7.38e-13 68.9
Msa1292650 MtrunA17_Chr1g0194481 37.778 90 54 2 77 166 139 226 3.78e-13 68.9
Msa1292650 MtrunA17_Chr7g0238921 44.737 76 41 1 79 154 106 180 4.24e-13 68.6
Msa1292650 MtrunA17_Chr4g0051881 47.692 65 33 1 97 161 178 241 4.59e-13 68.9
Msa1292650 MtrunA17_Chr8g0387981 40.230 87 46 2 72 152 103 189 5.46e-13 68.6
Msa1292650 MtrunA17_Chr2g0302391 46.667 60 32 0 98 157 212 271 6.83e-13 68.6
Msa1292650 MtrunA17_Chr8g0347251 40.404 99 49 3 64 152 95 193 7.04e-13 68.2
Msa1292650 MtrunA17_Chr5g0418781 32.759 116 76 2 64 179 92 205 1.03e-12 67.0
Msa1292650 MtrunA17_Chr3g0099641 41.333 75 43 1 83 157 238 311 1.19e-12 68.2
Msa1292650 MtrunA17_Chr8g0335811 44.928 69 36 2 95 163 152 218 2.01e-12 65.5
Msa1292650 MtrunA17_Chr4g0068541 41.429 70 40 1 97 166 208 276 2.49e-12 67.0
Msa1292650 MtrunA17_Chr3g0126391 46.552 58 29 1 97 152 133 190 2.59e-12 66.6
Msa1292650 MtrunA17_Chr2g0333851 40.000 75 40 1 95 164 167 241 3.53e-12 65.9
Msa1292650 MtrunA17_Chr8g0366921 45.977 87 34 2 5 78 234 320 1.17e-11 64.3
Msa1292650 MtrunA17_Chr8g0383351 42.424 66 36 2 95 160 158 221 1.19e-11 63.5
Msa1292650 MtrunA17_Chr7g0270831 45.000 60 33 0 98 157 217 276 1.52e-11 64.7
Msa1292650 MtrunA17_Chr5g0428351 46.377 69 35 1 98 164 184 252 1.62e-11 63.9
Msa1292650 MtrunA17_Chr3g0129321 40.909 66 38 1 94 159 115 179 1.85e-11 62.4
Msa1292650 MtrunA17_Chr7g0216891 47.368 57 30 0 98 154 220 276 1.91e-11 64.7
Msa1292650 MtrunA17_Chr3g0129361 43.077 65 35 2 95 159 142 204 1.96e-11 62.8
Msa1292650 MtrunA17_Chr1g0150271 41.270 63 37 0 95 157 99 161 2.20e-11 63.2
Msa1292650 MtrunA17_Chr2g0288871 41.333 75 43 1 83 157 292 365 2.40e-11 64.3
Msa1292650 MtrunA17_Chr7g0248721 35.556 90 54 3 67 154 109 196 2.58e-11 62.4
Msa1292650 MtrunA17_Chr7g0224801 41.667 60 34 1 95 154 91 149 3.31e-11 61.2
Msa1292650 MtrunA17_Chr6g0485431 44.928 69 35 3 90 157 148 214 3.37e-11 63.5
Msa1292650 MtrunA17_Chr8g0383251 30.827 133 80 6 35 157 37 167 3.45e-11 61.2
Msa1292650 MtrunA17_Chr4g0025061 45.902 61 33 0 98 158 361 421 3.52e-11 63.9
Msa1292650 MtrunA17_Chr4g0001361 41.270 63 37 0 95 157 160 222 4.26e-11 62.8
Msa1292650 MtrunA17_Chr5g0432071 35.354 99 54 4 73 171 87 175 5.79e-11 61.2
Msa1292650 MtrunA17_Chr4g0060271 45.000 60 33 0 98 157 256 315 6.03e-11 63.2
Msa1292650 MtrunA17_Chr4g0051181 45.902 61 33 0 98 158 244 304 6.82e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1292650 AT5G52830.1 54.167 96 42 2 74 169 143 236 7.48e-25 102
Msa1292650 AT4G01250.1 43.846 130 68 4 41 169 74 199 3.12e-24 100
Msa1292650 AT4G23550.1 52.809 89 41 1 81 169 124 211 1.57e-23 98.6
Msa1292650 AT5G45050.4 48.889 90 45 1 77 166 1021 1109 3.18e-20 91.7
Msa1292650 AT5G45050.1 44.762 105 57 1 62 166 1145 1248 3.71e-20 91.7
Msa1292650 AT5G45050.2 44.762 105 57 1 62 166 1117 1220 3.98e-20 91.3
Msa1292650 AT1G29280.1 56.716 67 29 0 98 164 75 141 1.99e-19 86.3
Msa1292650 AT4G24240.1 45.763 118 57 3 41 154 224 338 1.02e-18 85.9
Msa1292650 AT4G31550.1 48.352 91 46 1 72 162 222 311 1.09e-18 85.5
Msa1292650 AT4G31550.2 48.352 91 46 1 72 162 221 310 1.26e-18 85.1
Msa1292650 AT2G34830.2 49.398 83 41 1 84 166 211 292 2.29e-18 85.5
Msa1292650 AT2G34830.1 49.398 83 41 1 84 166 202 283 2.32e-18 85.5
Msa1292650 AT3G58710.2 56.061 66 29 0 98 163 71 136 4.63e-18 82.8
Msa1292650 AT2G23320.1 62.069 58 22 0 98 155 241 298 4.77e-18 83.6
Msa1292650 AT3G58710.1 56.061 66 29 0 98 163 72 137 4.84e-18 82.8
Msa1292650 AT3G04670.1 62.712 59 22 0 98 156 263 321 6.04e-18 83.2
Msa1292650 AT2G24570.1 49.412 85 42 1 72 156 219 302 1.22e-17 82.4
Msa1292650 AT1G30650.1 49.398 83 41 1 84 166 204 285 1.48e-17 83.2
Msa1292650 AT5G28650.1 61.017 59 23 0 98 156 263 321 1.52e-17 82.0
Msa1292650 AT3G01080.3 48.611 72 35 2 93 164 201 270 7.06e-17 80.1
Msa1292650 AT4G26440.1 50.685 73 34 2 96 168 177 247 1.24e-16 80.5
Msa1292650 AT4G26440.1 44.595 74 40 1 95 168 370 442 1.03e-14 74.7
Msa1292650 AT3G01080.2 48.611 72 35 2 93 164 201 270 2.70e-16 79.3
Msa1292650 AT3G01080.2 50.820 61 29 1 97 157 344 403 5.22e-14 72.4
Msa1292650 AT3G01080.1 48.611 72 35 2 93 164 163 232 3.49e-16 79.0
Msa1292650 AT3G01080.1 50.820 61 29 1 97 157 306 365 6.60e-14 72.0
Msa1292650 AT2G30590.1 49.398 83 39 1 77 156 290 372 5.18e-16 78.2
Msa1292650 AT1G13960.1 50.000 72 34 2 93 164 225 294 7.60e-16 78.2
Msa1292650 AT1G13960.1 49.180 61 30 1 97 157 409 468 3.68e-13 70.1
Msa1292650 AT2G03340.1 50.685 73 34 2 92 164 245 315 1.30e-15 77.4
Msa1292650 AT2G03340.1 48.529 68 34 1 97 164 415 481 1.39e-14 74.3
Msa1292650 AT1G13960.2 50.000 72 34 2 93 164 72 141 1.47e-15 76.6
Msa1292650 AT1G13960.2 49.180 61 30 1 97 157 256 315 6.80e-13 68.9
Msa1292650 AT2G37260.1 45.349 86 41 3 74 155 323 406 1.64e-15 77.0
Msa1292650 AT2G37260.1 40.385 104 49 4 55 158 134 224 3.78e-14 72.8
Msa1292650 AT2G37260.3 45.349 86 41 3 74 155 243 326 2.13e-15 76.3
Msa1292650 AT2G37260.3 40.385 104 49 4 55 158 54 144 5.23e-14 72.0
Msa1292650 AT2G37260.2 45.349 86 41 3 74 155 241 324 2.31e-15 75.9
Msa1292650 AT2G37260.2 40.385 104 49 4 55 158 52 142 5.47e-14 72.0
Msa1292650 AT5G56270.1 51.429 70 32 2 96 165 272 339 2.85e-15 76.6
Msa1292650 AT5G56270.1 48.438 64 32 1 95 158 485 547 2.42e-13 70.9
Msa1292650 AT5G07100.1 44.000 75 41 1 90 164 110 183 3.74e-14 72.0
Msa1292650 AT5G07100.1 44.118 68 37 1 95 162 232 298 1.94e-12 67.0
Msa1292650 AT5G07100.2 44.000 75 41 1 90 164 17 90 5.54e-14 70.1
Msa1292650 AT5G07100.2 44.118 68 37 1 95 162 139 205 3.53e-12 65.1
Msa1292650 AT5G07100.4 44.000 75 41 1 90 164 17 90 5.54e-14 70.1
Msa1292650 AT5G07100.4 44.118 68 37 1 95 162 139 205 3.53e-12 65.1
Msa1292650 AT5G07100.5 44.000 75 41 1 90 164 17 90 5.54e-14 70.1
Msa1292650 AT5G07100.5 44.118 68 37 1 95 162 139 205 3.53e-12 65.1
Msa1292650 AT5G07100.3 44.000 75 41 1 90 164 17 90 5.54e-14 70.1
Msa1292650 AT5G07100.3 44.118 68 37 1 95 162 139 205 3.53e-12 65.1
Msa1292650 AT5G41570.1 40.000 85 48 2 72 154 71 154 6.85e-14 69.3
Msa1292650 AT2G47260.1 40.000 90 52 2 77 166 155 242 7.08e-14 71.6
Msa1292650 AT1G64000.1 46.774 62 32 1 93 154 110 170 7.35e-14 69.3
Msa1292650 AT4G30935.1 42.466 73 41 1 86 158 320 391 7.99e-14 72.0
Msa1292650 AT2G38470.1 51.389 72 32 3 87 157 173 242 1.08e-13 71.6
Msa1292650 AT2G38470.1 43.529 85 44 3 95 179 360 440 1.15e-12 68.6
Msa1292650 AT1G66550.2 54.386 57 24 1 98 152 104 160 1.32e-13 69.7
Msa1292650 AT1G66550.1 54.386 57 24 1 98 152 109 165 1.47e-13 69.7
Msa1292650 AT2G46130.1 46.667 60 31 1 95 154 28 86 5.23e-13 64.7
Msa1292650 AT5G43290.1 50.794 63 30 1 92 154 109 170 5.49e-13 68.2
Msa1292650 AT5G46350.1 37.500 112 62 4 83 188 170 279 6.52e-13 68.6
Msa1292650 AT5G45260.1 45.455 66 34 1 98 161 1209 1274 8.60e-13 69.3
Msa1292650 AT2G30250.1 45.455 77 39 3 81 157 151 224 8.61e-13 68.6
Msa1292650 AT2G30250.1 48.485 66 33 1 98 163 329 393 1.24e-12 68.2
Msa1292650 AT4G18170.1 40.698 86 49 2 77 162 153 236 8.85e-13 68.2
Msa1292650 AT4G39410.1 40.506 79 45 2 95 173 221 297 9.03e-13 68.2
Msa1292650 AT2G21900.1 48.387 62 31 1 97 158 109 169 9.43e-13 66.6
Msa1292650 AT5G22570.1 53.226 62 27 1 93 152 106 167 1.03e-12 67.8
Msa1292650 AT1G69310.4 38.298 94 56 2 61 154 112 203 1.19e-12 67.4
Msa1292650 AT1G69310.2 38.298 94 56 2 61 154 112 203 1.19e-12 67.4
Msa1292650 AT1G69310.1 38.298 94 56 2 61 154 112 203 1.19e-12 67.4
Msa1292650 AT4G26640.7 42.857 70 39 1 95 164 339 407 1.46e-12 68.2
Msa1292650 AT4G26640.7 36.893 103 62 3 95 196 169 269 3.02e-12 67.4
Msa1292650 AT2G46400.1 32.414 145 84 4 17 155 28 164 1.48e-12 67.4
Msa1292650 AT4G26640.2 42.857 70 39 1 95 164 379 447 1.72e-12 68.2
Msa1292650 AT4G26640.2 36.893 103 62 3 95 196 209 309 3.45e-12 67.4
Msa1292650 AT4G26640.1 42.857 70 39 1 95 164 307 375 1.86e-12 67.8
Msa1292650 AT4G26640.1 36.893 103 62 3 95 196 137 237 3.32e-12 67.4
Msa1292650 AT4G26640.5 42.857 70 39 1 95 164 203 271 3.10e-12 67.0
Msa1292650 AT4G26640.5 36.893 103 62 3 95 196 33 133 4.88e-12 66.2
Msa1292650 AT4G26640.6 42.857 70 39 1 95 164 203 271 3.10e-12 67.0
Msa1292650 AT4G26640.6 36.893 103 62 3 95 196 33 133 4.88e-12 66.2
Msa1292650 AT4G26640.4 42.857 70 39 1 95 164 203 271 3.10e-12 67.0
Msa1292650 AT4G26640.4 36.893 103 62 3 95 196 33 133 4.88e-12 66.2
Msa1292650 AT4G26640.3 42.857 70 39 1 95 164 203 271 3.10e-12 67.0
Msa1292650 AT4G26640.3 36.893 103 62 3 95 196 33 133 4.88e-12 66.2
Msa1292650 AT2G04880.1 43.590 78 42 2 80 157 291 366 4.03e-12 67.0
Msa1292650 AT2G04880.1 47.692 65 32 2 93 157 107 169 5.31e-12 66.6
Msa1292650 AT2G04880.2 50.000 60 29 1 98 157 284 342 4.34e-12 66.6
Msa1292650 AT2G04880.2 47.692 65 32 2 93 157 107 169 6.09e-12 66.2
Msa1292650 AT5G01900.1 32.090 134 75 4 69 198 81 202 4.96e-12 65.5
Msa1292650 AT2G44745.1 46.667 60 31 1 95 154 143 201 5.15e-12 64.7
Msa1292650 AT1G80840.1 38.462 78 47 1 95 172 144 220 6.33e-12 65.5
Msa1292650 AT1G80590.1 43.678 87 41 3 98 176 86 172 6.85e-12 64.7
Msa1292650 AT2G25000.2 36.145 83 48 1 80 157 81 163 7.16e-12 64.3
Msa1292650 AT2G25000.4 36.145 83 48 1 80 157 81 163 7.16e-12 64.3
Msa1292650 AT4G04450.2 37.500 88 51 1 98 181 199 286 7.53e-12 65.9
Msa1292650 AT4G23810.1 44.318 88 41 4 73 153 130 216 7.88e-12 65.5
Msa1292650 AT1G55600.1 48.333 60 30 1 98 157 308 366 8.13e-12 65.9
Msa1292650 AT2G25000.3 36.145 83 48 1 80 157 103 185 8.18e-12 64.7
Msa1292650 AT1G66560.1 50.000 58 27 1 97 152 103 160 8.25e-12 64.7
Msa1292650 AT5G49520.1 44.615 65 35 1 97 161 221 284 8.33e-12 65.9
Msa1292650 AT2G40740.1 38.636 88 49 2 71 153 144 231 9.50e-12 65.1
Msa1292650 AT2G40740.3 39.080 87 48 2 71 152 153 239 1.03e-11 65.1
Msa1292650 AT5G26170.1 47.541 61 31 1 94 154 110 169 1.20e-11 62.8
Msa1292650 AT2G25000.1 36.145 83 48 1 80 157 124 206 1.53e-11 63.9
Msa1292650 AT1G66600.1 48.276 58 28 1 97 152 103 160 1.82e-11 63.5
Msa1292650 AT4G04450.1 37.500 88 51 1 98 181 293 380 1.90e-11 65.1
Msa1292650 AT4G11070.2 42.105 95 47 4 65 152 73 166 2.03e-11 63.9
Msa1292650 AT1G29860.1 44.776 67 36 1 97 163 136 201 2.13e-11 63.9
Msa1292650 AT4G11070.1 42.105 95 47 4 65 152 105 198 2.20e-11 63.9
Msa1292650 AT3G01970.1 42.647 68 36 2 95 160 63 129 2.61e-11 61.2
Msa1292650 AT4G22070.4 45.000 60 33 0 98 157 298 357 2.64e-11 64.7
Msa1292650 AT4G22070.3 45.000 60 33 0 98 157 298 357 2.64e-11 64.7
Msa1292650 AT4G22070.2 45.000 60 33 0 98 157 298 357 2.64e-11 64.7
Msa1292650 AT4G22070.1 45.000 60 33 0 98 157 298 357 2.64e-11 64.7
Msa1292650 AT1G62300.1 45.000 60 33 0 98 157 313 372 3.28e-11 64.3
Msa1292650 AT5G64810.1 47.761 67 30 3 95 159 108 171 3.58e-11 62.0
Msa1292650 AT3G62340.1 36.145 83 50 2 77 157 96 177 4.22e-11 62.8
Msa1292650 AT5G15130.2 45.000 60 33 0 98 157 186 245 4.87e-11 63.5
Msa1292650 AT4G01720.1 33.333 111 59 2 61 157 190 299 4.99e-11 63.5
Msa1292650 AT5G24110.1 37.975 79 47 1 83 159 99 177 5.06e-11 62.8
Msa1292650 AT5G15130.1 45.000 60 33 0 98 157 228 287 5.84e-11 63.5
Msa1292650 AT4G12020.3 40.741 81 43 3 92 172 463 538 6.25e-11 63.9
Msa1292650 AT4G12020.7 40.741 81 43 3 92 172 463 538 6.50e-11 63.9
Msa1292650 AT4G12020.10 40.741 81 43 3 92 172 463 538 6.54e-11 63.9
Msa1292650 AT4G12020.4 40.741 81 43 3 92 172 463 538 6.72e-11 63.9
Msa1292650 AT4G12020.6 40.741 81 43 3 92 172 463 538 6.79e-11 63.9
Msa1292650 AT4G12020.8 40.741 81 43 3 92 172 463 538 6.79e-11 63.9
Msa1292650 AT4G12020.2 40.741 81 43 3 92 172 463 538 6.85e-11 63.9
Msa1292650 AT4G12020.5 40.741 81 43 3 92 172 396 471 7.13e-11 63.5
Msa1292650 AT4G12020.1 40.741 81 43 3 92 172 463 538 7.19e-11 63.5
Msa1292650 AT4G12020.9 40.741 81 43 3 92 172 463 538 7.19e-11 63.5
Msa1292650 AT1G69810.1 41.667 72 41 1 98 168 204 275 9.61e-11 62.4
Msa1292650 AT1G69810.2 41.667 72 41 1 98 168 146 217 9.96e-11 62.4

Find 61 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCCAATTCTTCAATATTT+TGG 0.050319 8_3:-48996726 None:intergenic
GTCGATTTCACGTCGAAATT+TGG 0.080896 8_3:-48995151 None:intergenic
ATAAATTTCGCTTCTGTATA+CGG 0.189013 8_3:-48996826 None:intergenic
TGGATGTGAGGACCCTTTAA+TGG 0.244920 8_3:-48995524 None:intergenic
TCGATTTCACGTCGAAATTT+GGG 0.247314 8_3:-48995150 None:intergenic
TGGGGATTGTAGTATTATTC+TGG 0.273669 8_3:-48995131 None:intergenic
TCCCCAAAATATTGAAGAAT+TGG 0.278213 8_3:+48996723 Msa1292650:CDS
GTGCTCTCTATTCCATTAGT+TGG 0.318808 8_3:+48996938 Msa1292650:CDS
CTAGTTTGTGGTAGTTGAAT+TGG 0.323626 8_3:-48995219 None:intergenic
CAAAATTTAAATCAGGAAAA+AGG 0.334262 8_3:+48995277 Msa1292650:CDS
TCATGGAGATGGAGAAAATA+TGG 0.338703 8_3:+48995493 Msa1292650:CDS
TGCTCTCTATTCCATTAGTT+GGG 0.343239 8_3:+48996939 Msa1292650:CDS
ACCAACAAGAAGCCCCTTGC+TGG 0.348461 8_3:-48996636 None:intergenic
TTGGAGTTCCGATTATTTGC+TGG 0.372967 8_3:-48996485 None:intergenic
GTAGTTGATTATGACTTCTC+TGG 0.383485 8_3:-48995197 None:intergenic
ATAAGGTTTCAGAGGATTCA+TGG 0.385027 8_3:+48995476 Msa1292650:CDS
GGATGTGAGGACCCTTTAAT+GGG 0.387521 8_3:-48995523 None:intergenic
TTTGGGTCAAACCCAACTAA+TGG 0.398705 8_3:-48996950 None:intergenic
AGCTGCAACATTACCGCATT+AGG 0.400572 8_3:-48996599 None:intergenic
ACAATAAACCAGCAAATAAT+CGG 0.401514 8_3:+48996477 Msa1292650:CDS
AAACATGACACCTATGTTAG+AGG 0.415313 8_3:+48996882 Msa1292650:CDS
AAATGATAATCAAGTATCAT+TGG 0.431401 8_3:+48995435 Msa1292650:CDS
TGAACCTGTTGTTGTTCGGC+AGG 0.436685 8_3:-48995102 None:intergenic
GCCAGCAAGGGGCTTCTTGT+TGG 0.436694 8_3:+48996635 Msa1292650:CDS
TTTCACAAACATCATAAACT+TGG 0.439399 8_3:+48996571 Msa1292650:CDS
ACTTATGAAGTGACATATCT+AGG 0.442305 8_3:+48996443 Msa1292650:CDS
GAGTTTGTATCAACTGTTGA+TGG 0.448255 8_3:+48996536 Msa1292650:CDS
AACTGCAACATCATCATGTT+AGG 0.454150 8_3:-48996751 None:intergenic
TCTAACATAGGTGTCATGTT+TGG 0.456315 8_3:-48996880 None:intergenic
AAACGACCAAAATTTAAATC+AGG 0.456553 8_3:+48995270 Msa1292650:CDS
TTACCCTGCCGAACAACAAC+AGG 0.458001 8_3:+48995098 Msa1292650:CDS
GGCTTGAACCTGTTGTTGTT+CGG 0.469350 8_3:-48995106 None:intergenic
TAAATTTCGCTTCTGTATAC+GGG 0.471681 8_3:-48996825 None:intergenic
GATTGTAGTATTATTCTGGT+TGG 0.480965 8_3:-48995127 None:intergenic
TGATCAGCCAAGAGCCAGCA+AGG 0.485384 8_3:+48996622 Msa1292650:intron
GTATCATTGGTGAGCTATGT+GGG 0.490327 8_3:+48995448 Msa1292650:CDS
GTTGTTGTGGAACTAATTCA+TGG 0.500678 8_3:-48995173 None:intergenic
ACTTAGTCCTTTACCTACAC+TGG 0.501454 8_3:+48996687 Msa1292650:CDS
TGACTTCTCTGGAGTTGTTG+TGG 0.507145 8_3:-48995186 None:intergenic
TTCACAAACATCATAAACTT+GGG 0.528355 8_3:+48996572 Msa1292650:CDS
GCTTTGCCCAGTGTAGGTAA+AGG 0.528650 8_3:-48996694 None:intergenic
ACTCCAATGTCGGTAGCTCT+CGG 0.533519 8_3:+48996501 Msa1292650:CDS
TTTCAGAGGATTCATGGAGA+TGG 0.534538 8_3:+48995482 Msa1292650:CDS
CTTAGTCCTTTACCTACACT+GGG 0.545206 8_3:+48996688 Msa1292650:CDS
CGATTTCACGTCGAAATTTG+GGG 0.547197 8_3:-48995149 None:intergenic
AAAGATCTAAAACTAGTTTG+TGG 0.559260 8_3:-48995231 None:intergenic
AGTATCATTGGTGAGCTATG+TGG 0.560291 8_3:+48995447 Msa1292650:CDS
TTAAAGGGTCCTCACATCCA+AGG 0.572922 8_3:+48995527 Msa1292650:CDS
TTGTTTAGCAAGAAAACAAG+TGG 0.573603 8_3:+48996397 Msa1292650:CDS
GATCAGCCAAGAGCCAGCAA+GGG 0.580335 8_3:+48996623 Msa1292650:intron
GTACCGAGAGCTACCGACAT+TGG 0.603992 8_3:-48996504 None:intergenic
TCAACAGTTGATACAAACTC+TGG 0.605581 8_3:-48996533 None:intergenic
GGGTAATGAGAAATCAGAAA+CGG 0.605841 8_3:-48995081 None:intergenic
GAACCTGTTGTTGTTCGGCA+GGG 0.609171 8_3:-48995101 None:intergenic
AATGAGAAATCAGAAACGGC+GGG 0.616664 8_3:-48995077 None:intergenic
AAACTTGGGTTCTCCTAATG+CGG 0.633652 8_3:+48996586 Msa1292650:CDS
ATCAGCCAAGAGCCAGCAAG+GGG 0.652663 8_3:+48996624 Msa1292650:intron
TATCATTGGTGAGCTATGTG+GGG 0.653483 8_3:+48995449 Msa1292650:CDS
AATAATCGGAACTCCAATGT+CGG 0.657205 8_3:+48996491 Msa1292650:CDS
ATCATTGGTGAGCTATGTGG+GGG 0.659269 8_3:+48995450 Msa1292650:CDS
TAATGAGAAATCAGAAACGG+CGG 0.677566 8_3:-48995078 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAAAAATATATATTTAT+AGG + chr8_3:48996082-48996101 Msa1292650:intron 0.0%
!! TTTAAAAAATATATATTTAT+AGG + chr8_3:48996082-48996101 Msa1292650:intron 0.0%
!! TTAATATTGAATAAATTTGT+GGG - chr8_3:48995895-48995914 None:intergenic 10.0%
!! AATTTATTCAATATTAACAT+TGG + chr8_3:48995898-48995917 Msa1292650:intron 10.0%
!! AAAAATCACTATAAATATAA+GGG - chr8_3:48996158-48996177 None:intergenic 10.0%
!! TAAAAATCACTATAAATATA+AGG - chr8_3:48996159-48996178 None:intergenic 10.0%
!! ATATAAACACATATTTATAT+AGG - chr8_3:48996257-48996276 None:intergenic 10.0%
!! TTAATATTGAATAAATTTGT+GGG - chr8_3:48995895-48995914 None:intergenic 10.0%
!! AATTTATTCAATATTAACAT+TGG + chr8_3:48995898-48995917 Msa1292650:intron 10.0%
!! AAAAATCACTATAAATATAA+GGG - chr8_3:48996158-48996177 None:intergenic 10.0%
!! TAAAAATCACTATAAATATA+AGG - chr8_3:48996159-48996178 None:intergenic 10.0%
!! ATATAAACACATATTTATAT+AGG - chr8_3:48996257-48996276 None:intergenic 10.0%
!!! TTTTTTCTATAAGAAAAGAA+AGG - chr8_3:48995418-48995437 None:intergenic 15.0%
!! GTTAATATTGAATAAATTTG+TGG - chr8_3:48995896-48995915 None:intergenic 15.0%
!!! TTTTTTCTATAAGAAAAGAA+AGG - chr8_3:48995418-48995437 None:intergenic 15.0%
!! GTTAATATTGAATAAATTTG+TGG - chr8_3:48995896-48995915 None:intergenic 15.0%
!!! CTTTTTCCTGATTTAAATTT+TGG - chr8_3:48995279-48995298 None:intergenic 20.0%
!! CAAAATTTAAATCAGGAAAA+AGG + chr8_3:48995277-48995296 Msa1292650:CDS 20.0%
!!! AAGAAAGGTAAAATGATTTT+AGG - chr8_3:48995403-48995422 None:intergenic 20.0%
!! AAATGATAATCAAGTATCAT+TGG + chr8_3:48995435-48995454 Msa1292650:CDS 20.0%
!! TGCATTAAATGAGAAAAATA+TGG + chr8_3:48995644-48995663 Msa1292650:intron 20.0%
!! AACAAAACAAAAAATCAAAG+AGG - chr8_3:48995823-48995842 None:intergenic 20.0%
!! AGGATTATAGAAAAAAGATA+GGG - chr8_3:48995856-48995875 None:intergenic 20.0%
!! ATGTTCCATATGAATAAATT+TGG + chr8_3:48995968-48995987 Msa1292650:intron 20.0%
!! ATATGTGTTTATATGACTTT+AGG + chr8_3:48996263-48996282 Msa1292650:intron 20.0%
!!! ATCCAATTCTTCAATATTTT+GGG - chr8_3:48996728-48996747 None:intergenic 20.0%
!!! AATCCAATTCTTCAATATTT+TGG - chr8_3:48996729-48996748 None:intergenic 20.0%
!! AGATTCATATGAAAAAACAT+TGG - chr8_3:48996800-48996819 None:intergenic 20.0%
!!! CTTTTTCCTGATTTAAATTT+TGG - chr8_3:48995279-48995298 None:intergenic 20.0%
!! CAAAATTTAAATCAGGAAAA+AGG + chr8_3:48995277-48995296 Msa1292650:CDS 20.0%
!!! AAGAAAGGTAAAATGATTTT+AGG - chr8_3:48995403-48995422 None:intergenic 20.0%
!! AAATGATAATCAAGTATCAT+TGG + chr8_3:48995435-48995454 Msa1292650:CDS 20.0%
!! TGCATTAAATGAGAAAAATA+TGG + chr8_3:48995644-48995663 Msa1292650:intron 20.0%
!! AACAAAACAAAAAATCAAAG+AGG - chr8_3:48995823-48995842 None:intergenic 20.0%
!! AGGATTATAGAAAAAAGATA+GGG - chr8_3:48995856-48995875 None:intergenic 20.0%
!! ATGTTCCATATGAATAAATT+TGG + chr8_3:48995968-48995987 Msa1292650:intron 20.0%
!! ATATGTGTTTATATGACTTT+AGG + chr8_3:48996263-48996282 Msa1292650:intron 20.0%
!!! ATCCAATTCTTCAATATTTT+GGG - chr8_3:48996728-48996747 None:intergenic 20.0%
!!! AATCCAATTCTTCAATATTT+TGG - chr8_3:48996729-48996748 None:intergenic 20.0%
!! AGATTCATATGAAAAAACAT+TGG - chr8_3:48996800-48996819 None:intergenic 20.0%
!! AAAGATCTAAAACTAGTTTG+TGG - chr8_3:48995234-48995253 None:intergenic 25.0%
!!! GATTTAAATTTTGGTCGTTT+TGG - chr8_3:48995270-48995289 None:intergenic 25.0%
! AAACGACCAAAATTTAAATC+AGG + chr8_3:48995270-48995289 Msa1292650:CDS 25.0%
!!! TAAAATGATTTTAGGTCACA+AGG - chr8_3:48995395-48995414 None:intergenic 25.0%
! TTTGAATGCTTAAAAAACCT+TGG - chr8_3:48995547-48995566 None:intergenic 25.0%
! CAGGATTATAGAAAAAAGAT+AGG - chr8_3:48995857-48995876 None:intergenic 25.0%
!!! CTATCTTTTTTCTATAATCC+TGG + chr8_3:48995855-48995874 Msa1292650:intron 25.0%
! AACAAATCTTTCACTTATTG+TGG + chr8_3:48996193-48996212 Msa1292650:intron 25.0%
! CAAGTGGAAAAAATAAAAGA+TGG + chr8_3:48996413-48996432 Msa1292650:CDS 25.0%
! ACAATAAACCAGCAAATAAT+CGG + chr8_3:48996477-48996496 Msa1292650:CDS 25.0%
! TTTCACAAACATCATAAACT+TGG + chr8_3:48996571-48996590 Msa1292650:CDS 25.0%
! TTCACAAACATCATAAACTT+GGG + chr8_3:48996572-48996591 Msa1292650:CDS 25.0%
!!! TAAGTTCAGTTTTTAGATCA+GGG - chr8_3:48996672-48996691 None:intergenic 25.0%
!! TCCAATTCTTCAATATTTTG+GGG - chr8_3:48996727-48996746 None:intergenic 25.0%
! ATAAATTTCGCTTCTGTATA+CGG - chr8_3:48996829-48996848 None:intergenic 25.0%
! AAAAAGAATTCCTCTAACAT+AGG - chr8_3:48996895-48996914 None:intergenic 25.0%
!! TATGTTAGAGGAATTCTTTT+TGG + chr8_3:48996894-48996913 Msa1292650:CDS 25.0%
!! AAAGATCTAAAACTAGTTTG+TGG - chr8_3:48995234-48995253 None:intergenic 25.0%
!!! GATTTAAATTTTGGTCGTTT+TGG - chr8_3:48995270-48995289 None:intergenic 25.0%
! AAACGACCAAAATTTAAATC+AGG + chr8_3:48995270-48995289 Msa1292650:CDS 25.0%
!!! TAAAATGATTTTAGGTCACA+AGG - chr8_3:48995395-48995414 None:intergenic 25.0%
! TTTGAATGCTTAAAAAACCT+TGG - chr8_3:48995547-48995566 None:intergenic 25.0%
! CAGGATTATAGAAAAAAGAT+AGG - chr8_3:48995857-48995876 None:intergenic 25.0%
!!! CTATCTTTTTTCTATAATCC+TGG + chr8_3:48995855-48995874 Msa1292650:intron 25.0%
! AACAAATCTTTCACTTATTG+TGG + chr8_3:48996193-48996212 Msa1292650:intron 25.0%
! CAAGTGGAAAAAATAAAAGA+TGG + chr8_3:48996413-48996432 Msa1292650:CDS 25.0%
! ACAATAAACCAGCAAATAAT+CGG + chr8_3:48996477-48996496 Msa1292650:CDS 25.0%
! TTTCACAAACATCATAAACT+TGG + chr8_3:48996571-48996590 Msa1292650:CDS 25.0%
! TTCACAAACATCATAAACTT+GGG + chr8_3:48996572-48996591 Msa1292650:CDS 25.0%
!!! TAAGTTCAGTTTTTAGATCA+GGG - chr8_3:48996672-48996691 None:intergenic 25.0%
!! TCCAATTCTTCAATATTTTG+GGG - chr8_3:48996727-48996746 None:intergenic 25.0%
! ATAAATTTCGCTTCTGTATA+CGG - chr8_3:48996829-48996848 None:intergenic 25.0%
! AAAAAGAATTCCTCTAACAT+AGG - chr8_3:48996895-48996914 None:intergenic 25.0%
!! TATGTTAGAGGAATTCTTTT+TGG + chr8_3:48996894-48996913 Msa1292650:CDS 25.0%
GATTGTAGTATTATTCTGGT+TGG - chr8_3:48995130-48995149 None:intergenic 30.0%
TATGGACAAAAACCCATTAA+AGG + chr8_3:48995511-48995530 Msa1292650:CDS 30.0%
ATGGACAAAAACCCATTAAA+GGG + chr8_3:48995512-48995531 Msa1292650:CDS 30.0%
AACCACTAATTAAAACCCTT+GGG - chr8_3:48995609-48995628 None:intergenic 30.0%
TTAATGCAACTCTTTGCAAT+GGG - chr8_3:48995632-48995651 None:intergenic 30.0%
TTTAATGCAACTCTTTGCAA+TGG - chr8_3:48995633-48995652 None:intergenic 30.0%
TCCATATGAATAAATTTGGC+AGG + chr8_3:48995972-48995991 Msa1292650:intron 30.0%
TCCTGCCAAATTTATTCATA+TGG - chr8_3:48995976-48995995 None:intergenic 30.0%
AACAGAGACCGAAATAAAAA+AGG + chr8_3:48996009-48996028 Msa1292650:intron 30.0%
ACAGAGACCGAAATAAAAAA+GGG + chr8_3:48996010-48996029 Msa1292650:intron 30.0%
!!! TATACCCCCCTTTTTTATTT+CGG - chr8_3:48996020-48996039 None:intergenic 30.0%
ATCTTTCACTTATTGTGGTA+CGG + chr8_3:48996198-48996217 Msa1292650:intron 30.0%
! TTTTCTTGCTAAACAATCAC+TGG - chr8_3:48996393-48996412 None:intergenic 30.0%
TTGTTTAGCAAGAAAACAAG+TGG + chr8_3:48996397-48996416 Msa1292650:CDS 30.0%
ACTTATGAAGTGACATATCT+AGG + chr8_3:48996443-48996462 Msa1292650:CDS 30.0%
!! CTAAGTTCAGTTTTTAGATC+AGG - chr8_3:48996673-48996692 None:intergenic 30.0%
TCCCCAAAATATTGAAGAAT+TGG + chr8_3:48996723-48996742 Msa1292650:CDS 30.0%
TAAATTTCGCTTCTGTATAC+GGG - chr8_3:48996828-48996847 None:intergenic 30.0%
GATTGTAGTATTATTCTGGT+TGG - chr8_3:48995130-48995149 None:intergenic 30.0%
TATGGACAAAAACCCATTAA+AGG + chr8_3:48995511-48995530 Msa1292650:CDS 30.0%
ATGGACAAAAACCCATTAAA+GGG + chr8_3:48995512-48995531 Msa1292650:CDS 30.0%
AACCACTAATTAAAACCCTT+GGG - chr8_3:48995609-48995628 None:intergenic 30.0%
TTAATGCAACTCTTTGCAAT+GGG - chr8_3:48995632-48995651 None:intergenic 30.0%
TTTAATGCAACTCTTTGCAA+TGG - chr8_3:48995633-48995652 None:intergenic 30.0%
TCCATATGAATAAATTTGGC+AGG + chr8_3:48995972-48995991 Msa1292650:intron 30.0%
TCCTGCCAAATTTATTCATA+TGG - chr8_3:48995976-48995995 None:intergenic 30.0%
AACAGAGACCGAAATAAAAA+AGG + chr8_3:48996009-48996028 Msa1292650:intron 30.0%
ACAGAGACCGAAATAAAAAA+GGG + chr8_3:48996010-48996029 Msa1292650:intron 30.0%
!!! TATACCCCCCTTTTTTATTT+CGG - chr8_3:48996020-48996039 None:intergenic 30.0%
ATCTTTCACTTATTGTGGTA+CGG + chr8_3:48996198-48996217 Msa1292650:intron 30.0%
! TTTTCTTGCTAAACAATCAC+TGG - chr8_3:48996393-48996412 None:intergenic 30.0%
TTGTTTAGCAAGAAAACAAG+TGG + chr8_3:48996397-48996416 Msa1292650:CDS 30.0%
ACTTATGAAGTGACATATCT+AGG + chr8_3:48996443-48996462 Msa1292650:CDS 30.0%
!! CTAAGTTCAGTTTTTAGATC+AGG - chr8_3:48996673-48996692 None:intergenic 30.0%
TCCCCAAAATATTGAAGAAT+TGG + chr8_3:48996723-48996742 Msa1292650:CDS 30.0%
TAAATTTCGCTTCTGTATAC+GGG - chr8_3:48996828-48996847 None:intergenic 30.0%
TAATGAGAAATCAGAAACGG+CGG - chr8_3:48995081-48995100 None:intergenic 35.0%
GGGTAATGAGAAATCAGAAA+CGG - chr8_3:48995084-48995103 None:intergenic 35.0%
TGGGGATTGTAGTATTATTC+TGG - chr8_3:48995134-48995153 None:intergenic 35.0%
TCGATTTCACGTCGAAATTT+GGG - chr8_3:48995153-48995172 None:intergenic 35.0%
GTTGTTGTGGAACTAATTCA+TGG - chr8_3:48995176-48995195 None:intergenic 35.0%
GTAGTTGATTATGACTTCTC+TGG - chr8_3:48995200-48995219 None:intergenic 35.0%
! CTAGTTTGTGGTAGTTGAAT+TGG - chr8_3:48995222-48995241 None:intergenic 35.0%
!!! GGTCGTTTTGGTTTTGTATT+TGG - chr8_3:48995258-48995277 None:intergenic 35.0%
ATAAGGTTTCAGAGGATTCA+TGG + chr8_3:48995476-48995495 Msa1292650:CDS 35.0%
TCATGGAGATGGAGAAAATA+TGG + chr8_3:48995493-48995512 Msa1292650:CDS 35.0%
CTTAAAAAACCTTGGATGTG+AGG - chr8_3:48995539-48995558 None:intergenic 35.0%
GAACCACTAATTAAAACCCT+TGG - chr8_3:48995610-48995629 None:intergenic 35.0%
TGGGAACTAAAAGAAATACC+AGG - chr8_3:48995876-48995895 None:intergenic 35.0%
CAGAGACCGAAATAAAAAAG+GGG + chr8_3:48996011-48996030 Msa1292650:intron 35.0%
AGAGACCGAAATAAAAAAGG+GGG + chr8_3:48996012-48996031 Msa1292650:intron 35.0%
AATAATCGGAACTCCAATGT+CGG + chr8_3:48996491-48996510 Msa1292650:CDS 35.0%
! TCAACAGTTGATACAAACTC+TGG - chr8_3:48996536-48996555 None:intergenic 35.0%
GAGTTTGTATCAACTGTTGA+TGG + chr8_3:48996536-48996555 Msa1292650:CDS 35.0%
AACTGCAACATCATCATGTT+AGG - chr8_3:48996754-48996773 None:intergenic 35.0%
! TCTAACATAGGTGTCATGTT+TGG - chr8_3:48996883-48996902 None:intergenic 35.0%
AAACATGACACCTATGTTAG+AGG + chr8_3:48996882-48996901 Msa1292650:CDS 35.0%
TGCTCTCTATTCCATTAGTT+GGG + chr8_3:48996939-48996958 Msa1292650:CDS 35.0%
TAATGAGAAATCAGAAACGG+CGG - chr8_3:48995081-48995100 None:intergenic 35.0%
GGGTAATGAGAAATCAGAAA+CGG - chr8_3:48995084-48995103 None:intergenic 35.0%
TGGGGATTGTAGTATTATTC+TGG - chr8_3:48995134-48995153 None:intergenic 35.0%
TCGATTTCACGTCGAAATTT+GGG - chr8_3:48995153-48995172 None:intergenic 35.0%
GTTGTTGTGGAACTAATTCA+TGG - chr8_3:48995176-48995195 None:intergenic 35.0%
GTAGTTGATTATGACTTCTC+TGG - chr8_3:48995200-48995219 None:intergenic 35.0%
! CTAGTTTGTGGTAGTTGAAT+TGG - chr8_3:48995222-48995241 None:intergenic 35.0%
!!! GGTCGTTTTGGTTTTGTATT+TGG - chr8_3:48995258-48995277 None:intergenic 35.0%
ATAAGGTTTCAGAGGATTCA+TGG + chr8_3:48995476-48995495 Msa1292650:CDS 35.0%
TCATGGAGATGGAGAAAATA+TGG + chr8_3:48995493-48995512 Msa1292650:CDS 35.0%
CTTAAAAAACCTTGGATGTG+AGG - chr8_3:48995539-48995558 None:intergenic 35.0%
GAACCACTAATTAAAACCCT+TGG - chr8_3:48995610-48995629 None:intergenic 35.0%
TGGGAACTAAAAGAAATACC+AGG - chr8_3:48995876-48995895 None:intergenic 35.0%
CAGAGACCGAAATAAAAAAG+GGG + chr8_3:48996011-48996030 Msa1292650:intron 35.0%
AGAGACCGAAATAAAAAAGG+GGG + chr8_3:48996012-48996031 Msa1292650:intron 35.0%
AATAATCGGAACTCCAATGT+CGG + chr8_3:48996491-48996510 Msa1292650:CDS 35.0%
! TCAACAGTTGATACAAACTC+TGG - chr8_3:48996536-48996555 None:intergenic 35.0%
GAGTTTGTATCAACTGTTGA+TGG + chr8_3:48996536-48996555 Msa1292650:CDS 35.0%
AACTGCAACATCATCATGTT+AGG - chr8_3:48996754-48996773 None:intergenic 35.0%
! TCTAACATAGGTGTCATGTT+TGG - chr8_3:48996883-48996902 None:intergenic 35.0%
AAACATGACACCTATGTTAG+AGG + chr8_3:48996882-48996901 Msa1292650:CDS 35.0%
TGCTCTCTATTCCATTAGTT+GGG + chr8_3:48996939-48996958 Msa1292650:CDS 35.0%
AATGAGAAATCAGAAACGGC+GGG - chr8_3:48995080-48995099 None:intergenic 40.0%
CGATTTCACGTCGAAATTTG+GGG - chr8_3:48995152-48995171 None:intergenic 40.0%
! GTCGATTTCACGTCGAAATT+TGG - chr8_3:48995154-48995173 None:intergenic 40.0%
AGTATCATTGGTGAGCTATG+TGG + chr8_3:48995447-48995466 Msa1292650:CDS 40.0%
GTATCATTGGTGAGCTATGT+GGG + chr8_3:48995448-48995467 Msa1292650:CDS 40.0%
TATCATTGGTGAGCTATGTG+GGG + chr8_3:48995449-48995468 Msa1292650:CDS 40.0%
TTTCAGAGGATTCATGGAGA+TGG + chr8_3:48995482-48995501 Msa1292650:CDS 40.0%
CTAATTAAAACCCTTGGGTG+TGG - chr8_3:48995604-48995623 None:intergenic 40.0%
!!! CACCCAAGGGTTTTAATTAG+TGG + chr8_3:48995604-48995623 Msa1292650:intron 40.0%
GAGACCGAAATAAAAAAGGG+GGG + chr8_3:48996013-48996032 Msa1292650:intron 40.0%
TTGGAGTTCCGATTATTTGC+TGG - chr8_3:48996488-48996507 None:intergenic 40.0%
AAACTTGGGTTCTCCTAATG+CGG + chr8_3:48996586-48996605 Msa1292650:CDS 40.0%
ACTTAGTCCTTTACCTACAC+TGG + chr8_3:48996687-48996706 Msa1292650:CDS 40.0%
CTTAGTCCTTTACCTACACT+GGG + chr8_3:48996688-48996707 Msa1292650:CDS 40.0%
GTGCTCTCTATTCCATTAGT+TGG + chr8_3:48996938-48996957 Msa1292650:CDS 40.0%
AATGAGAAATCAGAAACGGC+GGG - chr8_3:48995080-48995099 None:intergenic 40.0%
CGATTTCACGTCGAAATTTG+GGG - chr8_3:48995152-48995171 None:intergenic 40.0%
! GTCGATTTCACGTCGAAATT+TGG - chr8_3:48995154-48995173 None:intergenic 40.0%
AGTATCATTGGTGAGCTATG+TGG + chr8_3:48995447-48995466 Msa1292650:CDS 40.0%
GTATCATTGGTGAGCTATGT+GGG + chr8_3:48995448-48995467 Msa1292650:CDS 40.0%
TATCATTGGTGAGCTATGTG+GGG + chr8_3:48995449-48995468 Msa1292650:CDS 40.0%
TTTCAGAGGATTCATGGAGA+TGG + chr8_3:48995482-48995501 Msa1292650:CDS 40.0%
CTAATTAAAACCCTTGGGTG+TGG - chr8_3:48995604-48995623 None:intergenic 40.0%
!!! CACCCAAGGGTTTTAATTAG+TGG + chr8_3:48995604-48995623 Msa1292650:intron 40.0%
GAGACCGAAATAAAAAAGGG+GGG + chr8_3:48996013-48996032 Msa1292650:intron 40.0%
TTGGAGTTCCGATTATTTGC+TGG - chr8_3:48996488-48996507 None:intergenic 40.0%
AAACTTGGGTTCTCCTAATG+CGG + chr8_3:48996586-48996605 Msa1292650:CDS 40.0%
ACTTAGTCCTTTACCTACAC+TGG + chr8_3:48996687-48996706 Msa1292650:CDS 40.0%
CTTAGTCCTTTACCTACACT+GGG + chr8_3:48996688-48996707 Msa1292650:CDS 40.0%
GTGCTCTCTATTCCATTAGT+TGG + chr8_3:48996938-48996957 Msa1292650:CDS 40.0%
! GGCTTGAACCTGTTGTTGTT+CGG - chr8_3:48995109-48995128 None:intergenic 45.0%
!! TGACTTCTCTGGAGTTGTTG+TGG - chr8_3:48995189-48995208 None:intergenic 45.0%
ATCATTGGTGAGCTATGTGG+GGG + chr8_3:48995450-48995469 Msa1292650:CDS 45.0%
GGATGTGAGGACCCTTTAAT+GGG - chr8_3:48995526-48995545 None:intergenic 45.0%
TGGATGTGAGGACCCTTTAA+TGG - chr8_3:48995527-48995546 None:intergenic 45.0%
TTAAAGGGTCCTCACATCCA+AGG + chr8_3:48995527-48995546 Msa1292650:CDS 45.0%
TAATACACACACCACACCCA+AGG + chr8_3:48995590-48995609 Msa1292650:intron 45.0%
AATACACACACCACACCCAA+GGG + chr8_3:48995591-48995610 Msa1292650:intron 45.0%
CACTTATTGTGGTACGGAGT+TGG + chr8_3:48996204-48996223 Msa1292650:intron 45.0%
AGCTGCAACATTACCGCATT+AGG - chr8_3:48996602-48996621 None:intergenic 45.0%
! GATTTTGCTTTGCCCAGTGT+AGG - chr8_3:48996703-48996722 None:intergenic 45.0%
! GGCTTGAACCTGTTGTTGTT+CGG - chr8_3:48995109-48995128 None:intergenic 45.0%
!! TGACTTCTCTGGAGTTGTTG+TGG - chr8_3:48995189-48995208 None:intergenic 45.0%
ATCATTGGTGAGCTATGTGG+GGG + chr8_3:48995450-48995469 Msa1292650:CDS 45.0%
GGATGTGAGGACCCTTTAAT+GGG - chr8_3:48995526-48995545 None:intergenic 45.0%
TGGATGTGAGGACCCTTTAA+TGG - chr8_3:48995527-48995546 None:intergenic 45.0%
TTAAAGGGTCCTCACATCCA+AGG + chr8_3:48995527-48995546 Msa1292650:CDS 45.0%
TAATACACACACCACACCCA+AGG + chr8_3:48995590-48995609 Msa1292650:intron 45.0%
AATACACACACCACACCCAA+GGG + chr8_3:48995591-48995610 Msa1292650:intron 45.0%
CACTTATTGTGGTACGGAGT+TGG + chr8_3:48996204-48996223 Msa1292650:intron 45.0%
AGCTGCAACATTACCGCATT+AGG - chr8_3:48996602-48996621 None:intergenic 45.0%
! GATTTTGCTTTGCCCAGTGT+AGG - chr8_3:48996703-48996722 None:intergenic 45.0%
!! TGTAAAATATATTAAATAAT+AGG - chr8_3:48995316-48995335 None:intergenic 5.0%
!! TGTAAAATATATTAAATAAT+AGG - chr8_3:48995316-48995335 None:intergenic 5.0%
TTACCCTGCCGAACAACAAC+AGG + chr8_3:48995098-48995117 Msa1292650:CDS 50.0%
! GAACCTGTTGTTGTTCGGCA+GGG - chr8_3:48995104-48995123 None:intergenic 50.0%
! TGAACCTGTTGTTGTTCGGC+AGG - chr8_3:48995105-48995124 None:intergenic 50.0%
ACTCCAATGTCGGTAGCTCT+CGG + chr8_3:48996501-48996520 Msa1292650:CDS 50.0%
GCTTTGCCCAGTGTAGGTAA+AGG - chr8_3:48996697-48996716 None:intergenic 50.0%
TTACCCTGCCGAACAACAAC+AGG + chr8_3:48995098-48995117 Msa1292650:CDS 50.0%
! GAACCTGTTGTTGTTCGGCA+GGG - chr8_3:48995104-48995123 None:intergenic 50.0%
! TGAACCTGTTGTTGTTCGGC+AGG - chr8_3:48995105-48995124 None:intergenic 50.0%
ACTCCAATGTCGGTAGCTCT+CGG + chr8_3:48996501-48996520 Msa1292650:CDS 50.0%
GCTTTGCCCAGTGTAGGTAA+AGG - chr8_3:48996697-48996716 None:intergenic 50.0%
GAGCTATGTGGGGGCAGATA+AGG + chr8_3:48995459-48995478 Msa1292650:CDS 55.0%
GGGGGCAGATAAGGTTTCAG+AGG + chr8_3:48995468-48995487 Msa1292650:CDS 55.0%
GTACCGAGAGCTACCGACAT+TGG - chr8_3:48996507-48996526 None:intergenic 55.0%
TGATCAGCCAAGAGCCAGCA+AGG + chr8_3:48996622-48996641 Msa1292650:intron 55.0%
GATCAGCCAAGAGCCAGCAA+GGG + chr8_3:48996623-48996642 Msa1292650:intron 55.0%
ATCAGCCAAGAGCCAGCAAG+GGG + chr8_3:48996624-48996643 Msa1292650:intron 55.0%
ACCAACAAGAAGCCCCTTGC+TGG - chr8_3:48996639-48996658 None:intergenic 55.0%
GAGCTATGTGGGGGCAGATA+AGG + chr8_3:48995459-48995478 Msa1292650:CDS 55.0%
GGGGGCAGATAAGGTTTCAG+AGG + chr8_3:48995468-48995487 Msa1292650:CDS 55.0%
GTACCGAGAGCTACCGACAT+TGG - chr8_3:48996507-48996526 None:intergenic 55.0%
TGATCAGCCAAGAGCCAGCA+AGG + chr8_3:48996622-48996641 Msa1292650:intron 55.0%
GATCAGCCAAGAGCCAGCAA+GGG + chr8_3:48996623-48996642 Msa1292650:intron 55.0%
ATCAGCCAAGAGCCAGCAAG+GGG + chr8_3:48996624-48996643 Msa1292650:intron 55.0%
ACCAACAAGAAGCCCCTTGC+TGG - chr8_3:48996639-48996658 None:intergenic 55.0%
!! AGAAGCCCCTTGCTGGCTCT+TGG - chr8_3:48996632-48996651 None:intergenic 60.0%
GCCAGCAAGGGGCTTCTTGT+TGG + chr8_3:48996635-48996654 Msa1292650:CDS 60.0%
!! AGAAGCCCCTTGCTGGCTCT+TGG - chr8_3:48996632-48996651 None:intergenic 60.0%
GCCAGCAAGGGGCTTCTTGT+TGG + chr8_3:48996635-48996654 Msa1292650:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 48995059 48996966 48995059 ID=Msa1292650;Name=Msa1292650
chr8_3 mRNA 48995059 48996966 48995059 ID=Msa1292650-mRNA-1;Parent=Msa1292650;Name=Msa1292650-mRNA-1;_AED=0.25;_eAED=0.30;_QI=0|0|0|1|0.5|0.2|5|0|307
chr8_3 exon 48995059 48995119 48995059 ID=Msa1292650-mRNA-1:exon:13624;Parent=Msa1292650-mRNA-1
chr8_3 exon 48995127 48995298 48995127 ID=Msa1292650-mRNA-1:exon:13625;Parent=Msa1292650-mRNA-1
chr8_3 exon 48995432 48995548 48995432 ID=Msa1292650-mRNA-1:exon:13626;Parent=Msa1292650-mRNA-1
chr8_3 exon 48996367 48996607 48996367 ID=Msa1292650-mRNA-1:exon:13627;Parent=Msa1292650-mRNA-1
chr8_3 exon 48996634 48996966 48996634 ID=Msa1292650-mRNA-1:exon:13628;Parent=Msa1292650-mRNA-1
chr8_3 CDS 48995059 48995119 48995059 ID=Msa1292650-mRNA-1:cds;Parent=Msa1292650-mRNA-1
chr8_3 CDS 48995127 48995298 48995127 ID=Msa1292650-mRNA-1:cds;Parent=Msa1292650-mRNA-1
chr8_3 CDS 48995432 48995548 48995432 ID=Msa1292650-mRNA-1:cds;Parent=Msa1292650-mRNA-1
chr8_3 CDS 48996367 48996607 48996367 ID=Msa1292650-mRNA-1:cds;Parent=Msa1292650-mRNA-1
chr8_3 CDS 48996634 48996966 48996634 ID=Msa1292650-mRNA-1:cds;Parent=Msa1292650-mRNA-1
Gene Sequence

>Msa1292650

ATGGACTCAATCAAATATCCCGCCGTTTCTGATTTCTCATTACCCTGCCGAACAACAACAGCCAACCAGAATAATACTACAATCCCCAAATTTCGACGTGAAATCGACCATGAATTAGTTCCACAACAACTCCAGAGAAGTCATAATCAACTACCAATTCAACTACCACAAACTAGTTTTAGATCTTTACCAAATACAAAACCAAAACGACCAAAATTTAAATCAGGAAAAAGAAAAAATGATAATCAAGTATCATTGGTGAGCTATGTGGGGGCAGATAAGGTTTCAGAGGATTCATGGAGATGGAGAAAATATGGACAAAAACCCATTAAAGGGTCCTCACATCCAAGAAGCTACTACAAATGTAGCAGTTCCAGTGATTGTTTAGCAAGAAAACAAGTGGAAAAAATAAAAGATGGAGATGACACTTATGAAGTGACATATCTAGGAGAACACAATCACAATAAACCAGCAAATAATCGGAACTCCAATGTCGGTAGCTCTCGGTACATGTCACCAGAGTTTGTATCAACTGTTGATGGAGAAGCTAGATGTTTCACAAACATCATAAACTTGGGTTCTCCTAATGCGAGCCAGCAAGGGGCTTCTTGTTGGTCAATCAAAATCCCTGATCTAAAAACTGAACTTAGTCCTTTACCTACACTGGGCAAAGCAAAATCTCCCCAAAATATTGAAGAATTGGATTCACCTAACATGATGATGTTGCAGTTTGATCAGCAGAAGAGCGAAAATTCCAATGTTTTTTCATATGAATCTGAAATCCCGTATACAGAAGCGAAATTTATTGAAAGCTTCAAAGAAGATGAAATTTTGATACCAAACATGACACCTATGTTAGAGGAATTCTTTTTGGATTTCAACAATGTCAATAGTTGTGCTCTCTATTCCATTAGTTGGGTTTGA
Protein sequence

>Msa1292650

MDSIKYPAVSDFSLPCRTTTANQNNTTIPKFRREIDHELVPQQLQRSHNQLPIQLPQTSFRSLPNTKPKRPKFKSGKRKNDNQVSLVSYVGADKVSEDSWRWRKYGQKPIKGSSHPRSYYKCSSSSDCLARKQVEKIKDGDDTYEVTYLGEHNHNKPANNRNSNVGSSRYMSPEFVSTVDGEARCFTNIINLGSPNASQQGASCWSIKIPDLKTELSPLPTLGKAKSPQNIEELDSPNMMMLQFDQQKSENSNVFSYESEIPYTEAKFIESFKEDEILIPNMTPMLEEFFLDFNNVNSCALYSISWV*